RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17730
         (101 letters)



>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
           2.44A {Escherichia coli} SCOP: a.127.1.1
          Length = 457

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 16/65 (24%)

Query: 1   MPQKKNPDIPRTLSEAKPESCLRQ--RLFNMLTH----PMEISASSVHDKDMQECKQPRA 54
           MPQKKNPD    L   K   C R    L  M+      P+       ++KDMQE K+   
Sbjct: 280 MPQKKNPDALE-LIRGK---CGRVQGALTGMMMTLKGLPL------AYNKDMQEDKEGLF 329

Query: 55  TAIDN 59
            A+D 
Sbjct: 330 DALDT 334


>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
           {Thermus thermophilus}
          Length = 462

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 16/65 (24%)

Query: 1   MPQKKNPDIPRTLSEAKPESCLRQ--RLFNMLTH----PMEISASSVHDKDMQECKQPRA 54
           MPQKKNPDI   L  AK     R       +       P+       ++KD+QE K+P  
Sbjct: 283 MPQKKNPDILE-LIRAK---AGRVLGAFVGLSAVVKGLPL------AYNKDLQEDKEPLL 332

Query: 55  TAIDN 59
            A+  
Sbjct: 333 DALAT 337


>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
           enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
           SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
           1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
           1k62_A
          Length = 468

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 16/65 (24%)

Query: 1   MPQKKNPDIPRTLSEAKPESCLRQ--RLFNMLTH----PMEISASSVHDKDMQECKQPRA 54
           MPQKKNPD    L  +K     R   RL ++L      P      S ++KD+QE K+   
Sbjct: 286 MPQKKNPDSLE-LIRSK---AGRVFGRLASILMVLKGLP------STYNKDLQEDKEAVF 335

Query: 55  TAIDN 59
             +D 
Sbjct: 336 DVVDT 340


>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich,
           flavoprotein, structural genomics protein structure
           initiative; 1.83A {Streptococcus pneumoniae}
          Length = 232

 Score = 25.3 bits (56), Expect = 3.5
 Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 6/34 (17%)

Query: 4   KKNPDIPRTLSEAKPESCLRQRL--FNMLTHPME 35
           KK P I   + E  P       L  F +L    E
Sbjct: 139 KKTPKIISLVKEWNP----TIHLIGFKLLVDVTE 168


>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
           degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
           a.127.1.1
          Length = 454

 Score = 24.6 bits (54), Expect = 8.0
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   MPQKKNP 7
           MP K+NP
Sbjct: 283 MPHKRNP 289


>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
           class II cycloisomerase, molecular EV isomerase; HET:
           CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
          Length = 450

 Score = 24.2 bits (53), Expect = 8.9
 Identities = 5/7 (71%), Positives = 6/7 (85%)

Query: 1   MPQKKNP 7
           MP K+NP
Sbjct: 279 MPHKRNP 285


>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding,
          RNA methylase, RSMD, SAM-fold, RNA methyltransferase;
          1.90A {Mycobacterium tuberculosis}
          Length = 189

 Score = 24.0 bits (53), Expect = 8.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 23 RQRLFNMLTHPMEISASSVHD 43
          R+ LFN++T   +++  +V D
Sbjct: 30 RESLFNIVTARRDLTGLAVLD 50


>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
           initiat YORK SGX research center for structural
           genomics, nysgxrc; 2.20A {Mesorhizobium SP}
          Length = 451

 Score = 24.2 bits (53), Expect = 9.5
 Identities = 6/7 (85%), Positives = 7/7 (100%)

Query: 1   MPQKKNP 7
           MPQK+NP
Sbjct: 277 MPQKQNP 283


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.130    0.397 

Gapped
Lambda     K      H
   0.267   0.0727    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,405,851
Number of extensions: 63192
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 18
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)