BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17732
         (186 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1JB9|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
           Maize Root At 1.7 Angstroms
          Length = 316

 Score = 26.9 bits (58), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 132 TYTKDWPDTATYEKTKADEELLQKLRFSGKFYAQHSKEFYN 172
           +Y K +PD   Y+K  + E   QK R  GK Y Q   E Y+
Sbjct: 221 SYLKQYPDNFRYDKALSRE---QKNRSGGKMYVQDKIEEYS 258


>pdb|3LO8|A Chain A, Crystal Structure Of The Oxidized Form Of Ferredoxin:nadp+
           Reductase From Maize Root At 1.05 Angstroms
          Length = 311

 Score = 26.9 bits (58), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 132 TYTKDWPDTATYEKTKADEELLQKLRFSGKFYAQHSKEFYN 172
           +Y K +PD   Y+K  + E   QK R  GK Y Q   E Y+
Sbjct: 216 SYLKQYPDNFRYDKALSRE---QKNRSGGKMYVQDKIEEYS 253


>pdb|3LVB|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
           Maize Root At 1.7 Angstroms - Test Set Withheld
          Length = 311

 Score = 26.9 bits (58), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 132 TYTKDWPDTATYEKTKADEELLQKLRFSGKFYAQHSKEFYN 172
           +Y K +PD   Y+K  + E   QK R  GK Y Q   E Y+
Sbjct: 216 SYLKQYPDNFRYDKALSRE---QKNRSGGKMYVQDKIEEYS 253


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,778,292
Number of Sequences: 62578
Number of extensions: 215060
Number of successful extensions: 431
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 8
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)