Query psy17732
Match_columns 186
No_of_seqs 21 out of 23
Neff 2.5
Searched_HMMs 29240
Date Fri Aug 16 21:34:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zch_A Hypothetical oxidoreduc 33.3 44 0.0015 26.4 4.0 35 99-139 200-234 (255)
2 3ez0_A Uncharacterized protein 27.4 42 0.0014 28.4 3.1 19 121-139 94-112 (225)
3 2l6p_A PHAC1, PHAC2 and PHAD g 26.1 29 0.00098 25.9 1.7 36 87-123 83-119 (124)
4 2l9d_A Uncharacterized protein 25.7 23 0.0008 27.1 1.1 18 118-135 23-40 (108)
5 1f5v_A Oxygen-insensitive NADP 20.2 80 0.0027 24.6 3.3 35 99-139 192-226 (240)
6 2l6n_A Uncharacterized protein 17.2 42 0.0014 25.5 1.0 36 86-122 89-125 (132)
7 2l4v_A Cystatin; protease inhi 17.1 59 0.002 24.6 1.8 18 122-139 59-76 (135)
8 1bkj_A NADPH-flavin oxidoreduc 16.6 71 0.0024 24.9 2.2 35 99-139 192-226 (240)
9 1z6o_A Ferritin light chain; m 13.7 1.2E+02 0.0041 24.2 2.8 27 101-127 88-116 (212)
10 1urf_A Protein kinase C-like 1 12.9 1.2E+02 0.0042 22.1 2.4 20 126-154 27-46 (81)
No 1
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase; HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1
Probab=33.29 E-value=44 Score=26.38 Aligned_cols=35 Identities=17% Similarity=0.530 Sum_probs=28.5
Q ss_pred chhhHHHhhhhccCCCCCCCCCCcccHHHHHHhhhhcCCcc
Q psy17732 99 YYDDVIHYLNSKSQGGHVTELPRPQTWAERALRTYTKDWPD 139 (186)
Q Consensus 99 YYDDvIdYLDrR~kG~~~~eiPrPQtWAERaLRTy~~~~~~ 139 (186)
|-+.|-+|.+.|..|- +.++|.+++.+.+.+..+.
T Consensus 200 y~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 234 (255)
T 1zch_A 200 YDEQMSEYMNKRTNGK------ETRNWSQSIASYYERLYYP 234 (255)
T ss_dssp HHHHHHHHHHHHHTTS------CCCCHHHHHHHHHTSCSCT
T ss_pred HHHHHHHHHHhccCCC------ccccHHHHHHHHHhhhccH
Confidence 5566789999999887 7789999999998776444
No 2
>3ez0_A Uncharacterized protein with ferritin-like fold; YP_832262.1, protein of unknown function with ferritin-like structural genomics; HET: UNL TLA; 2.33A {Arthrobacter SP}
Probab=27.39 E-value=42 Score=28.37 Aligned_cols=19 Identities=32% Similarity=0.667 Sum_probs=15.9
Q ss_pred CcccHHHHHHhhhhcCCcc
Q psy17732 121 RPQTWAERALRTYTKDWPD 139 (186)
Q Consensus 121 rPQtWAERaLRTy~~~~~~ 139 (186)
+|.+|.|+++++|--.+..
T Consensus 94 ~P~dW~E~LvKaYVgdgla 112 (225)
T 3ez0_A 94 RPADWYESLMKAYVIDTVS 112 (225)
T ss_dssp CCSSHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhhHH
Confidence 5779999999999876654
No 3
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=26.09 E-value=29 Score=25.95 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=30.5
Q ss_pred ccchhhhcccccchhhHHHhhhh-ccCCCCCCCCCCcc
Q psy17732 87 LQYRYNYDYAHNYYDDVIHYLNS-KSQGGHVTELPRPQ 123 (186)
Q Consensus 87 LqY~YlYDYr~NYYDDvIdYLDr-R~kG~~~~eiPrPQ 123 (186)
..++||++...|+..-.-+||++ +.+|. .||+|+.+
T Consensus 83 Y~~~~L~~l~~~~~~~~~~y~~~l~~~g~-~r~~~~~~ 119 (124)
T 2l6p_A 83 FTWDYLYELATRKDQLWADYLAELASAGK-SRDPDESV 119 (124)
T ss_dssp CTTHHHHHHHTTHHHHHHHHHHHHHHTTC-CSSTTCCC
T ss_pred ECHHHHHHhhhhHHHHHHHHHHHHHHcCC-CCCCcccc
Confidence 56788889999999999999998 56788 99988654
No 4
>2l9d_A Uncharacterized protein; PG9854E, structural genomics, PSI-biology, protein structure initiative, unknown function; NMR {Methylobacillus flagellatus}
Probab=25.66 E-value=23 Score=27.10 Aligned_cols=18 Identities=33% Similarity=0.702 Sum_probs=12.9
Q ss_pred CCCCcccHHHHHHhhhhc
Q psy17732 118 ELPRPQTWAERALRTYTK 135 (186)
Q Consensus 118 eiPrPQtWAERaLRTy~~ 135 (186)
..=||-.||||+--...+
T Consensus 23 k~FRPSDWAERL~Gvma~ 40 (108)
T 2l9d_A 23 KPFRPSDWVDRMCSTYAS 40 (108)
T ss_dssp CBCSCTTHHHHHHHTTCE
T ss_pred CCcCCchHHHHHhhHHHh
Confidence 345899999998754433
No 5
>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein, oxidoreduction, nitrocompound, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1
Probab=20.22 E-value=80 Score=24.57 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=27.7
Q ss_pred chhhHHHhhhhccCCCCCCCCCCcccHHHHHHhhhhcCCcc
Q psy17732 99 YYDDVIHYLNSKSQGGHVTELPRPQTWAERALRTYTKDWPD 139 (186)
Q Consensus 99 YYDDvIdYLDrR~kG~~~~eiPrPQtWAERaLRTy~~~~~~ 139 (186)
|-+-|-+|-+.|+.|- +.++|.+++.+.+.+..+.
T Consensus 192 y~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 226 (240)
T 1f5v_A 192 YDEQLAEYYLTRGSNN------RRDTWSDHIRRTIIKESRP 226 (240)
T ss_dssp HHHHHHHHHHTTCSSC------CCCCHHHHHHHHHTSCCCT
T ss_pred HHHHHHHHHHhccCCC------ccccHHHHHHHHHhhhccH
Confidence 5556789999998886 6689999999988765444
No 6
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=17.16 E-value=42 Score=25.49 Aligned_cols=36 Identities=22% Similarity=0.205 Sum_probs=30.4
Q ss_pred cccchhhhcccccchhhHHHhhhh-ccCCCCCCCCCCc
Q psy17732 86 RLQYRYNYDYAHNYYDDVIHYLNS-KSQGGHVTELPRP 122 (186)
Q Consensus 86 fLqY~YlYDYr~NYYDDvIdYLDr-R~kG~~~~eiPrP 122 (186)
...++||++...|+..-.-+||++ +.+|. .||+|+.
T Consensus 89 iYs~~~L~~l~~~~~~~w~~yl~~l~~~g~-~r~~~~~ 125 (132)
T 2l6n_A 89 LYSWKVLYDLASNQVDLWENYLARLRAAKA-SREPLID 125 (132)
T ss_dssp CEEHHHHHHHHTTTTHHHHHHHHHHHHHTC-CCCCCCC
T ss_pred EECHHHHHHHhhhHHHHHHHHHHHHHHcCC-CCCCccc
Confidence 356788999999999999999998 66788 8998854
No 7
>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus}
Probab=17.10 E-value=59 Score=24.60 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=14.7
Q ss_pred cccHHHHHHhhhhcCCcc
Q psy17732 122 PQTWAERALRTYTKDWPD 139 (186)
Q Consensus 122 PQtWAERaLRTy~~~~~~ 139 (186)
-|.-++-|+..|+++.++
T Consensus 59 vqe~a~fAv~e~N~~sn~ 76 (135)
T 2l4v_A 59 KEDLARFAVREYNNKNNA 76 (135)
T ss_dssp HHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 488888999888887766
No 8
>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN; 1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A*
Probab=16.63 E-value=71 Score=24.87 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=20.4
Q ss_pred chhhHHHhhhhccCCCCCCCCCCcccHHHHHHhhhhcCCcc
Q psy17732 99 YYDDVIHYLNSKSQGGHVTELPRPQTWAERALRTYTKDWPD 139 (186)
Q Consensus 99 YYDDvIdYLDrR~kG~~~~eiPrPQtWAERaLRTy~~~~~~ 139 (186)
|-+.|-+|.+.|..|- +.++|.+++.+.+.+..+.
T Consensus 192 y~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 226 (240)
T 1bkj_A 192 YDQTMQAYYASRTSNQ------KLSTWSQEVTGKLAGESRP 226 (240)
T ss_dssp HHHHHHHHC---------------CCHHHHHHHHHTSCCCT
T ss_pred HHHHHHHHHHHccCCC------ccccHHHHHHHHHhhhccH
Confidence 5556778999998876 6789999999998766444
No 9
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1
Probab=13.75 E-value=1.2e+02 Score=24.17 Aligned_cols=27 Identities=7% Similarity=0.028 Sum_probs=19.8
Q ss_pred hhHHHhhhhccCCCCCCCCCCc--ccHHH
Q psy17732 101 DDVIHYLNSKSQGGHVTELPRP--QTWAE 127 (186)
Q Consensus 101 DDvIdYLDrR~kG~~~~eiPrP--QtWAE 127 (186)
+.+|+||..|.--+...+|+.| +.|++
T Consensus 88 ~kli~yi~~rGg~~~l~~i~~p~~~~~~~ 116 (212)
T 1z6o_A 88 IDIIKHVTKRGDKMNFDQHSTMKTERKNY 116 (212)
T ss_dssp HHHHHHHHHTTCCCCTTCCCCSCCCCCCC
T ss_pred HHHHHHHHHCCCCccccccccccccccCc
Confidence 4689999999876666677777 45643
No 10
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=12.89 E-value=1.2e+02 Score=22.13 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=13.8
Q ss_pred HHHHHhhhhcCCccccccccchhhHHHHH
Q psy17732 126 AERALRTYTKDWPDTATYEKTKADEELLQ 154 (186)
Q Consensus 126 AERaLRTy~~~~~~~~~~~~k~~D~kLl~ 154 (186)
||.++++|...... |.+||.
T Consensus 27 AENmi~~y~~g~~~---------drKlLa 46 (81)
T 1urf_A 27 AENMIQTYSNGSTK---------DRKLLL 46 (81)
T ss_dssp HHHHHHHHHHSSSC---------CHHHHH
T ss_pred HHHHHHHHHcCCch---------hHHHHH
Confidence 68899999655433 666663
Done!