Query psy17732
Match_columns 186
No_of_seqs 21 out of 23
Neff 2.5
Searched_HMMs 13730
Date Fri Aug 16 21:34:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17732.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17732hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1c20a_ a.4.3.1 (A:) DNA-bindi 12.0 38 0.0028 23.3 1.3 24 96-121 23-46 (128)
2 d1juqa_ a.118.9.2 (A:) ADP-rib 9.1 66 0.0048 22.5 1.7 25 97-123 122-146 (151)
3 d2q4oa1 c.129.1.1 (A:8-190) Hy 8.8 55 0.004 23.6 1.2 13 97-109 141-153 (183)
4 d1nkta2 a.172.1.1 (A:616-835) 8.2 39 0.0028 24.4 0.1 15 91-105 18-34 (220)
5 d1t95a3 d.58.11.3 (A:162-234) 8.0 59 0.0043 21.3 1.0 15 100-114 55-69 (73)
6 d1n0ua5 d.58.11.1 (A:726-842) 8.0 55 0.004 21.9 0.9 22 102-125 92-113 (117)
7 d1v54g_ f.23.2.1 (G:) Mitochon 7.9 64 0.0046 21.8 1.1 17 78-94 39-55 (84)
8 d1ql3a_ a.3.1.1 (A:) Cytochrom 7.5 70 0.0051 20.9 1.2 12 100-111 88-99 (99)
9 d1rcda_ a.25.1.1 (A:) (Apo)fer 7.2 70 0.0051 22.3 1.1 15 95-109 3-17 (171)
10 d1bkja_ d.90.1.1 (A:) Flavin r 7.1 1.1E+02 0.0077 22.3 2.2 35 99-139 191-225 (239)
No 1
>d1c20a_ a.4.3.1 (A:) DNA-binding domain from the dead ringer protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=11.97 E-value=38 Score=23.31 Aligned_cols=24 Identities=21% Similarity=0.653 Sum_probs=17.5
Q ss_pred cccchhhHHHhhhhccCCCCCCCCCC
Q psy17732 96 AHNYYDDVIHYLNSKSQGGHVTELPR 121 (186)
Q Consensus 96 r~NYYDDvIdYLDrR~kG~~~~eiPr 121 (186)
|.+|.++++.|+.+| |....-+|.
T Consensus 23 r~~F~~~L~~f~~~r--g~~~~~~P~ 46 (128)
T d1c20a_ 23 RKEFLDDLFSFMQKR--GTPINRLPI 46 (128)
T ss_dssp HHHHHHHHHHHHTTT--SSCSSCCCE
T ss_pred HHHHHHHHHHHHHHc--CCccCcCCe
Confidence 568999999999887 552344564
No 2
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.06 E-value=66 Score=22.55 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=17.8
Q ss_pred ccchhhHHHhhhhccCCCCCCCCCCcc
Q psy17732 97 HNYYDDVIHYLNSKSQGGHVTELPRPQ 123 (186)
Q Consensus 97 ~NYYDDvIdYLDrR~kG~~~~eiPrPQ 123 (186)
..+|.|+-+=| |++|+.+.++|.|+
T Consensus 122 ~~~~~~~Y~~L--k~~Gv~fp~p~~p~ 146 (151)
T d1juqa_ 122 EAKIKDAYHML--KRQGIVQSDPPIPV 146 (151)
T ss_dssp CHHHHHHHHHH--HHTTSCSSCCCBCC
T ss_pred cHHHHHHHHHH--HHcCCCCCCCCCCc
Confidence 34566774444 88999888888875
No 3
>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=8.83 E-value=55 Score=23.55 Aligned_cols=13 Identities=15% Similarity=0.864 Sum_probs=11.3
Q ss_pred ccchhhHHHhhhh
Q psy17732 97 HNYYDDVIHYLNS 109 (186)
Q Consensus 97 ~NYYDDvIdYLDr 109 (186)
.+|||++|++||.
T Consensus 141 ~gfw~~l~~~l~~ 153 (183)
T d2q4oa1 141 DGYYNSLLSFIDK 153 (183)
T ss_dssp GGTTHHHHHHHHH
T ss_pred CccHHHHHHHHHH
Confidence 3799999999975
No 4
>d1nkta2 a.172.1.1 (A:616-835) Helical scaffold and wing domains of SecA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=8.19 E-value=39 Score=24.43 Aligned_cols=15 Identities=33% Similarity=0.751 Sum_probs=8.2
Q ss_pred hhhcccccc--hhhHHH
Q psy17732 91 YNYDYAHNY--YDDVIH 105 (186)
Q Consensus 91 YlYDYr~NY--YDDvId 105 (186)
++||.|+|= |||||+
T Consensus 18 ~nfdiRK~lleYDdVmn 34 (220)
T d1nkta2 18 QNFEVRKNVLKYDEVMN 34 (220)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhHHHHHHHHH
Confidence 455555553 566654
No 5
>d1t95a3 d.58.11.3 (A:162-234) Hypothetical protein AF0491, C-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.03 E-value=59 Score=21.30 Aligned_cols=15 Identities=27% Similarity=0.634 Sum_probs=12.7
Q ss_pred hhhHHHhhhhccCCC
Q psy17732 100 YDDVIHYLNSKSQGG 114 (186)
Q Consensus 100 YDDvIdYLDrR~kG~ 114 (186)
.+|+||-|++..+|-
T Consensus 55 q~e~~~~ln~~t~G~ 69 (73)
T d1t95a3 55 YGDLMDLLGKVAKGE 69 (73)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhhhcCCc
Confidence 578999999998885
No 6
>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.02 E-value=55 Score=21.85 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=15.9
Q ss_pred hHHHhhhhccCCCCCCCCCCcccH
Q psy17732 102 DVIHYLNSKSQGGHVTELPRPQTW 125 (186)
Q Consensus 102 DvIdYLDrR~kG~~~~eiPrPQtW 125 (186)
.+|+-.- |.||+ ..++|.++.|
T Consensus 92 ~~i~~~R-~rKgL-~~~~p~~~~~ 113 (117)
T d1n0ua5 92 EIVLAAR-KRHGM-KEEVPGWQEY 113 (117)
T ss_dssp HHHHHHH-HHTTC-CSSCCCGGGG
T ss_pred HHHHHHH-HhCCC-CCCCCCHHHh
Confidence 3455443 45999 9999998865
No 7
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.89 E-value=64 Score=21.77 Aligned_cols=17 Identities=24% Similarity=0.163 Sum_probs=13.4
Q ss_pred cccccCCccccchhhhc
Q psy17732 78 FHHWVRPTRLQYRYNYD 94 (186)
Q Consensus 78 ~kHWvRP~fLqY~YlYD 94 (186)
..|+-||.|..|.||+=
T Consensus 39 ~~h~e~pe~~~Y~yl~I 55 (84)
T d1v54g_ 39 SGHRERPAFIPYHHLRI 55 (84)
T ss_dssp CSCCCCCCCCCCTTSSC
T ss_pred cccccCCCCCCCchhhh
Confidence 57889999999866643
No 8
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}
Probab=7.48 E-value=70 Score=20.87 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=8.8
Q ss_pred hhhHHHhhhhcc
Q psy17732 100 YDDVIHYLNSKS 111 (186)
Q Consensus 100 YDDvIdYLDrR~ 111 (186)
=+|||.||...|
T Consensus 88 ~~dliaYLks~~ 99 (99)
T d1ql3a_ 88 RANLIAYLEGQQ 99 (99)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHhhcC
Confidence 468999997643
No 9
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]}
Probab=7.19 E-value=70 Score=22.32 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=9.0
Q ss_pred ccccchhhHHHhhhh
Q psy17732 95 YAHNYYDDVIHYLNS 109 (186)
Q Consensus 95 Yr~NYYDDvIdYLDr 109 (186)
.|+||-.+|++.||+
T Consensus 3 ~r~n~~~e~~~aLN~ 17 (171)
T d1rcda_ 3 VRQNFHQDCEAGLNR 17 (171)
T ss_dssp TCCSCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 356666666665554
No 10
>d1bkja_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase) {Vibrio harveyi [TaxId: 669]}
Probab=7.12 E-value=1.1e+02 Score=22.32 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=18.8
Q ss_pred chhhHHHhhhhccCCCCCCCCCCcccHHHHHHhhhhcCCcc
Q psy17732 99 YYDDVIHYLNSKSQGGHVTELPRPQTWAERALRTYTKDWPD 139 (186)
Q Consensus 99 YYDDvIdYLDrR~kG~~~~eiPrPQtWAERaLRTy~~~~~~ 139 (186)
|-..|-+|.+.|..|. +..+|.+.+.+++....+.
T Consensus 191 yd~~~~~~~~~r~~~~------~~~~ws~~~~~~~~~~~r~ 225 (239)
T d1bkja_ 191 YDQTMQAYYASRTSNQ------KLSTWSQEVTGKLAGESRP 225 (239)
T ss_dssp HHHHHHHHC---------------CCHHHHHHHHHTSCCCT
T ss_pred HHHHHHHHHHHhcCCC------CCCCHHHHHHHHhhhcchH
Confidence 3445677888888876 3458999999988765443
Done!