RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17732
         (186 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 55.2 bits (132), Expect = 2e-09
 Identities = 35/197 (17%), Positives = 60/197 (30%), Gaps = 46/197 (23%)

Query: 5   WADDGGFSWDDVEAIEEPKAQRSLPPKQLRVLAGAPAEKKPEETQAR--DI---GAQKDS 59
           W D       DV  +     + SL             EK+P+E+      I      K  
Sbjct: 396 WFDV---IKSDVMVVVNKLHKYSL------------VEKQPKESTISIPSIYLELKVKLE 440

Query: 60  EIQALH--FPKKRDIKKTREFHHWVRPTRLQYRYNYDYAHNYYDDVIHYLNSKSQGGHVT 117
              ALH       +I KT +    + P   QY Y++         + H+L +      +T
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH---------IGHHLKNIEHPERMT 491

Query: 118 ELPRPQT---WAERALRTYTKDWP----------DTATYEK--TKADEELLQKLRFSGKF 162
                     + E+ +R  +  W               Y+      D +  + +     F
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 163 YAQHSKEFYNRKYRDVL 179
             +  +     KY D+L
Sbjct: 552 LPKIEENLICSKYTDLL 568


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.4 bits (62), Expect = 0.84
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 5/24 (20%)

Query: 144 EKTKADEELLQKLRFSGKFYAQHS 167
           EK       L+KL+ S K YA  S
Sbjct: 18  EKQA-----LKKLQASLKLYADDS 36



 Score = 27.2 bits (59), Expect = 2.4
 Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 3/25 (12%)

Query: 127 ERALRTYTKDWPDTATYEKTKADEE 151
           + +L+ Y     D+A     KA  E
Sbjct: 26  QASLKLYA---DDSAPALAIKATME 47


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.133    0.419 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,117,822
Number of extensions: 178839
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 13
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.1 bits)