RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17732
         (186 letters)



>d1n67a2 b.2.3.4 (A:370-560) Clumping factor A {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 191

 Score = 26.0 bits (57), Expect = 2.2
 Identities = 7/32 (21%), Positives = 13/32 (40%)

Query: 82  VRPTRLQYRYNYDYAHNYYDDVIHYLNSKSQG 113
           +R T   Y  N  +    +D+ + + N    G
Sbjct: 136 LRSTLYGYNSNIIWRSMSWDNEVAFNNGSGSG 167


>d1hx6a2 b.121.2.1 (A:245-384) Coat protein p3 {Bacteriophage prd1
           [TaxId: 10658]}
          Length = 140

 Score = 25.5 bits (55), Expect = 3.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 104 IHYLNSKSQGGHVTELPRPQTWAERALRTYTKDWPDTATY 143
           I+YL+ ++     T    P+TWA +  R    D+P    Y
Sbjct: 59  INYLSQRTANFSDTRKLDPKTWAAQTRRRIATDFPKGVYY 98


>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts),
          dimerisation domain {Cow (Bos taurus), mitochondrial
          [TaxId: 9913]}
          Length = 109

 Score = 24.8 bits (54), Expect = 3.5
 Identities = 7/32 (21%), Positives = 11/32 (34%)

Query: 44 KPEETQARDIGAQKDSEIQALHFPKKRDIKKT 75
           P    + D     ++E + L  P   D   T
Sbjct: 55 APLSVGSLDDEPGGEAETKMLSQPYLLDPSIT 86


>d2guda1 b.77.3.1 (A:1-121) Griffithsin {Red alga (Griffithsia)
          [TaxId: 35158]}
          Length = 121

 Score = 24.0 bits (52), Expect = 9.7
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 3  RKWADDGGFSWDDVEAI 19
          RK+   GG  +  + +I
Sbjct: 5  RKFGGSGGSPFSGLSSI 21


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.419 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 780,784
Number of extensions: 36899
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 6
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)