Query psy17733
Match_columns 388
No_of_seqs 91 out of 93
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 21:34:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17733.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17733hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06469 DUF1088: Domain of Un 100.0 3.4E-72 7.3E-77 504.8 13.3 161 26-220 1-161 (169)
2 KOG1787|consensus 100.0 1E-36 2.2E-41 332.6 5.7 267 1-330 113-385 (1126)
3 PF06469 DUF1088: Domain of Un 99.6 3.3E-16 7.2E-21 142.4 5.7 118 60-199 1-134 (169)
4 cd01201 Neurobeachin Neurobeac 99.2 5.8E-12 1.2E-16 108.0 4.1 45 343-387 1-45 (108)
5 cd01201 Neurobeachin Neurobeac 98.9 4.2E-10 9.1E-15 96.6 1.5 51 279-329 1-51 (108)
6 KOG1787|consensus 98.1 1.2E-06 2.6E-11 98.3 1.7 53 335-388 326-379 (1126)
7 PF14844 PH_BEACH: PH domain a 96.4 0.0018 4E-08 53.3 2.0 32 345-376 2-33 (106)
8 PF14844 PH_BEACH: PH domain a 91.8 0.043 9.3E-07 45.2 -0.3 32 281-312 2-33 (106)
9 PF08159 NUC153: NUC153 domain 59.1 2.5 5.5E-05 29.3 -0.4 15 373-387 13-27 (30)
10 PF15516 BpuSI_N: BpuSI N-term 35.4 9.5 0.00021 35.3 -0.7 25 348-372 114-138 (159)
11 PF08247 ENOD40: ENOD40 protei 35.3 5.5 0.00012 22.8 -1.4 9 1-12 1-9 (12)
12 smart00568 GRAM domain in gluc 28.8 55 0.0012 24.2 2.5 33 343-376 6-38 (61)
13 KOG3083|consensus 23.7 1.4E+02 0.0031 30.0 4.9 86 49-138 131-228 (271)
14 PF03213 Pox_P35: Poxvirus P35 22.3 57 0.0012 33.7 2.0 17 2-18 89-105 (325)
15 PF10635 DisA-linker: DisA bac 21.3 82 0.0018 28.8 2.6 28 19-46 66-93 (145)
No 1
>PF06469 DUF1088: Domain of Unknown Function (DUF1088); InterPro: IPR010508 This domain is found in the neurobeachins. The function of this region is not known.
Probab=100.00 E-value=3.4e-72 Score=504.76 Aligned_cols=161 Identities=63% Similarity=1.025 Sum_probs=149.5
Q ss_pred hhhhhhhhhhhhHHhhhhhhHHHHhhhhhHHHhhHHHHhhhhhhhhHHHhcchhhHHHhhhchhHHhhhhhhhHHHHHHh
Q psy17733 26 EGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTL 105 (388)
Q Consensus 26 EGrll~ha~rdhivRvaNEAe~~~~~~~a~el~~~~~l~~~~~~dh~~~~a~eaeFILNR~RAeDV~Kha~fe~~~a~~~ 105 (388)
||||||||||||||||||||| |||||||||||+|||+||++|||++
T Consensus 1 EGRLlsha~rDHivRVAnEAe----------------------------------fILnr~raedv~kha~FE~~~aq~~ 46 (169)
T PF06469_consen 1 EGRLLSHAMRDHIVRVANEAE----------------------------------FILNRQRAEDVHKHAEFESLCAQTS 46 (169)
T ss_pred CchhhhhHHHHHHHHHhHHHH----------------------------------HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666 9999999999999999999999999
Q ss_pred hhhHHHHHhhHHHHHHhhhhhhhhHHHHHHHHHHHhhcCCCCccchhhhhhhhhhccccchhhHHHhhhhcCCCCCCCCC
Q psy17733 106 QERRDEERLCDHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPRGTSHP 185 (388)
Q Consensus 106 ~~~reEE~~Cd~LI~AaRrRD~~tAarl~dkv~~iLtn~~gaWg~~~~~~~~~fwKLD~WEDDsRRRrRfVrNp~Gs~Hp 185 (388)
++++|||+||||||+|+|+||+++|.||++||+|||||++||||.+..+++++|||||+||||+|||+|||||||||+||
T Consensus 47 ~~~~eEe~~cdhli~AarrRD~~~a~~L~~Ki~~iLtn~~GaWg~~~~~~~~~fWkLD~WEDD~RRRrR~V~NP~GS~H~ 126 (169)
T PF06469_consen 47 ADRREEERMCDHLIRAARRRDHVTASRLLRKILNILTNKHGAWGDSSSSRPSEFWKLDYWEDDSRRRRRFVPNPYGSTHP 126 (169)
T ss_pred HhhHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCCCCccccCccceeeccccccchHHHHhcCCCCCCCcch
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred ccchhhhhhcCCchHHHHhhhHhhhhhHhhhhccc
Q psy17733 186 NATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSS 220 (388)
Q Consensus 186 ~AtL~~~~~~~~~e~a~~~~~~~~~~~~~~~~~ss 220 (388)
+|||++..+++++++++.++++++++|++++++++
T Consensus 127 ~Atlk~~~e~~~~e~~~~~~~~~~~~q~~~~~~~~ 161 (169)
T PF06469_consen 127 EATLKAAEEHGAEEDEVEKAKEEFRSQIAPSQNQE 161 (169)
T ss_pred HhHHhhHHhccCchHHHHHHHHHHHHHhccccCCC
Confidence 99999999999999999999999999987766644
No 2
>KOG1787|consensus
Probab=100.00 E-value=1e-36 Score=332.64 Aligned_cols=267 Identities=19% Similarity=0.192 Sum_probs=224.7
Q ss_pred CccchHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhHHHHhhhhhHHHhhHHHHhhhhhhhhHHHhcchhh
Q psy17733 1 MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVANEAE 80 (388)
Q Consensus 1 MlLcSQEWQ~slQK~AGlAFIELinEGrll~ha~rdhivRvaNEAe~~~~~~~a~el~~~~~l~~~~~~dh~~~~a~eae 80 (388)
|++|+|+||+++|||+|++||+++|||++++|.|++|++||+||+|
T Consensus 113 ~~~~~~~~q~~~~~~~~~~~i~~v~e~~~~~~~~~~~~~~~~~~~e---------------------------------- 158 (1126)
T KOG1787|consen 113 SELHLRDQQKFCQKHSAVACVPSVNEPFLSTNDGAVYALRSGLESE---------------------------------- 158 (1126)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhcccccccccccceeeccccchhh----------------------------------
Confidence 7899999999999999999999999999999999999999999999
Q ss_pred HHHhhhchhHHhhhhhhhHHHHHHhhhhHHHHHhhHHHHHHhhhhhhhhHHHHHHHHHHHhhcCCCCccchhhh----hh
Q psy17733 81 FILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAA----RT 156 (388)
Q Consensus 81 FILNR~RAeDV~Kha~fe~~~a~~~~~~reEE~~Cd~LI~AaRrRD~~tAarl~dkv~~iLtn~~gaWg~~~~~----~~ 156 (388)
||+||.|++++++|+.|++.|+++++.+.+++.+|++++.++|.|+..++.++..++.+++++.+++|++.... +.
T Consensus 159 ~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~r~~~~v~~~~~~~~~~~~d~~~~w~~~~~~~~~s~~ 238 (1126)
T KOG1787|consen 159 FSSSRASASSVSGGVMLDILALMALASGQISAEVAERLTAAARLRTYASVTQLFTKIGMLLTDLGAQWRDLSHSLSRSKK 238 (1126)
T ss_pred hhhccchhhhccCCchhhhhhhhhhcccchhHHHHHHHHHHhhcccccchHHhhhhHHHHHHHHHHHHHhhccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987766 88
Q ss_pred hhhhccccchhhHHHhhhhcCCCCCCCCCccchhhhhhcCCchHHHHhhhHhhhhhHhhhhcccccCCCCccccccchhh
Q psy17733 157 QEFWKLDSWEDDARRRKRFVRNPRGTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSE 236 (388)
Q Consensus 157 ~~fwKLD~WEDDsRRRrRfVrNp~Gs~Hp~AtL~~~~~~~~~e~a~~~~~~~~~~~~~~~~~ss~~~~a~~~~~~~~~~e 236 (388)
..||++++|+|+.+|++++++|.+|..|+++.+.....+...-+...+.-..+ +.-+.+..+.+..
T Consensus 239 ~~f~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~t~~~~~~~~~ 304 (1126)
T KOG1787|consen 239 ALFGEGENFSDIVSRLNENLRNANGLEHPEAKLNVGEKQLLLLDEGGKLTIGI--------------GSQTGKSLLSQAT 304 (1126)
T ss_pred hhccCccchHHHHHhhhhccccccccchhhhhhhhhhhhcccccccccccccc--------------ccccccchhhhhh
Confidence 89999999999999999999999999999999976655543222111111111 1112222222222
Q ss_pred hhhhhhhhhhccccCCCCCccCccCCchhhhc--CCCCCCccCCCCceeecccccccCcccccCcccccccccccccCCC
Q psy17733 237 LIEGEVAVVSQSSQANGANTCSELMDDSELIE--GGGDIDIDLTGPVNISTRARLISPGVSAQGTLSITSTELYFEVDED 314 (388)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~el~~dsd~~~--~~~e~d~d~~gpv~~ST~A~liAPGvva~GTLSITssELyFEvDEd 314 (388)
.++. ++.+ .+++++.+.+. ++++.++ ...+.++|++|.+++ +.|..|+++++.++.+|+++++
T Consensus 305 ~~~~-----------s~~~--~~~~~~~~~l~~~~ek~~~~-~~~~~~lss~~~~~~-~~~t~~~~~~~~~~s~~~~~es 369 (1126)
T KOG1787|consen 305 QNQN-----------SDQE--LLLLLRMDLLSLRQEKDIEN-SSLSEVLSSPANTIA-LEVTLGNLSSVDSESELSMRES 369 (1126)
T ss_pred cCCC-----------ccch--hhhhhhhhhhhccccccccc-cccceeeeccCCccc-eeeeccceeeecchhhhhhhcC
Confidence 2211 1111 35566666666 5555554 689999999999999 9999999999999999999999
Q ss_pred CCcccCCCCccccccc
Q psy17733 315 CPDFRNTDPERSVISG 330 (388)
Q Consensus 315 dp~f~k~Dp~vl~~~~ 330 (388)
++.++|.+.++++|..
T Consensus 370 ~~a~~~~~l~~l~~~~ 385 (1126)
T KOG1787|consen 370 PSASKKSLLKPLAYLE 385 (1126)
T ss_pred chHHHHHhhhHHhcCc
Confidence 9999999999999874
No 3
>PF06469 DUF1088: Domain of Unknown Function (DUF1088); InterPro: IPR010508 This domain is found in the neurobeachins. The function of this region is not known.
Probab=99.62 E-value=3.3e-16 Score=142.39 Aligned_cols=118 Identities=30% Similarity=0.366 Sum_probs=98.7
Q ss_pred HHHHhhhhhhhhHHHhcchhhHHHhhhchhHHhhhhhhhHHHHHHhhhhHHHHHhhHHHHHHhhhhhhh-----hHHHHH
Q psy17733 60 HAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISAARRRDQG-----TAGRIL 134 (388)
Q Consensus 60 ~~~l~~~~~~dh~~~~a~eaeFILNR~RAeDV~Kha~fe~~~a~~~~~~reEE~~Cd~LI~AaRrRD~~-----tAarl~ 134 (388)
|||||||+|||||||||| -||-|+. -+.|+.+..|++||+.|.+.....|.++.+ +|++++
T Consensus 1 EGRLlsha~rDHivRVAn---------EAefILn-----r~raedv~kha~FE~~~aq~~~~~~eEe~~cdhli~AarrR 66 (169)
T PF06469_consen 1 EGRLLSHAMRDHIVRVAN---------EAEFILN-----RQRAEDVHKHAEFESLCAQTSADRREEERMCDHLIRAARRR 66 (169)
T ss_pred CchhhhhHHHHHHHHHhH---------HHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Confidence 799999999999999999 9999998 568999999999999998777777777666 999999
Q ss_pred HHHHHHhhcCCCCccchhhhhhhhhhccccchhhHHHhhh-----------hcCCCCCCCCCccchhhhhhcCCch
Q psy17733 135 DKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKR-----------FVRNPRGTSHPNATLEKVAQKEVPE 199 (388)
Q Consensus 135 dkv~~iLtn~~gaWg~~~~~~~~~fwKLD~WEDDsRRRrR-----------fVrNp~Gs~Hp~AtL~~~~~~~~~e 199 (388)
|.++ |-....+..++...++++|++.+.-+.. ..|..+++.+|.++.|+.+++.+..
T Consensus 67 D~~~--------a~~L~~Ki~~iLtn~~GaWg~~~~~~~~~fWkLD~WEDD~RRRrR~V~NP~GS~H~~Atlk~~~ 134 (169)
T PF06469_consen 67 DHVT--------ASRLLRKILNILTNKHGAWGDSSSSRPSEFWKLDYWEDDSRRRRRFVPNPYGSTHPEATLKAAE 134 (169)
T ss_pred hHHH--------HHHHHHHHHHHHcCCCCCCCCccccCccceeeccccccchHHHHhcCCCCCCCcchHhHHhhHH
Confidence 9998 4344456788999999999976533333 6788888999999998888877644
No 4
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=99.23 E-value=5.8e-12 Score=107.98 Aligned_cols=45 Identities=58% Similarity=0.903 Sum_probs=43.7
Q ss_pred CceeeccccccccceeeeccceeeeceeeEEeecCCCCcccCCCC
Q psy17733 343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDP 387 (388)
Q Consensus 343 gpv~~st~a~liapgvv~~Gtlsit~~elyFevded~p~fkk~d~ 387 (388)
||+.+|++|+||+|++|+||+|+||+..|||++|+++|+|+++|+
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~ 45 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDD 45 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCc
Confidence 799999999999999999999999999999999999999999886
No 5
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=98.90 E-value=4.2e-10 Score=96.63 Aligned_cols=51 Identities=53% Similarity=0.784 Sum_probs=48.9
Q ss_pred CCceeecccccccCcccccCcccccccccccccCCCCCcccCCCCcccccc
Q psy17733 279 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPERSVIS 329 (388)
Q Consensus 279 gpv~~ST~A~liAPGvva~GTLSITssELyFEvDEddp~f~k~Dp~vl~~~ 329 (388)
||+.+|++|.||.|++|.||+++||+..|||++|+++|+++++|++++.|.
T Consensus 1 ~~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~ 51 (108)
T cd01201 1 GPVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYC 51 (108)
T ss_pred CCeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceecc
Confidence 689999999999999999999999999999999999999999999999774
No 6
>KOG1787|consensus
Probab=98.07 E-value=1.2e-06 Score=98.31 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=47.3
Q ss_pred CCCCc-CCCCceeeccccccccceeeeccceeeeceeeEEeecCCCCcccCCCCC
Q psy17733 335 RTPDL-EFGGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 388 (388)
Q Consensus 335 ~~~~~-~~~gpv~~st~a~liapgvv~~Gtlsit~~elyFevded~p~fkk~d~~ 388 (388)
++.+. +..++.++|+++++++ ++|.+||++++.++.||+++|+++.||+.+.+
T Consensus 326 ~ek~~~~~~~~~~lss~~~~~~-~~~t~~~~~~~~~~s~~~~~es~~a~~~~~l~ 379 (1126)
T KOG1787|consen 326 QEKDIENSSLSEVLSSPANTIA-LEVTLGNLSSVDSESELSMRESPSASKKSLLK 379 (1126)
T ss_pred ccccccccccceeeeccCCccc-eeeeccceeeecchhhhhhhcCchHHHHHhhh
Confidence 44444 5789999999999999 99999999999999999999999999998653
No 7
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=96.40 E-value=0.0018 Score=53.29 Aligned_cols=32 Identities=38% Similarity=0.532 Sum_probs=28.4
Q ss_pred eeeccccccccceeeeccceeeeceeeEEeec
Q psy17733 345 VNISTRARLISPGVSAQGTLSITSTELYFEVD 376 (388)
Q Consensus 345 v~~st~a~liapgvv~~Gtlsit~~elyFevd 376 (388)
|.+|++|+||.|-.+.||+|.||.+.+||..+
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~ 33 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPN 33 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE-
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEEC
Confidence 67899999999999999999999999999988
No 8
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=91.83 E-value=0.043 Score=45.20 Aligned_cols=32 Identities=38% Similarity=0.532 Sum_probs=28.1
Q ss_pred ceeecccccccCcccccCcccccccccccccC
Q psy17733 281 VNISTRARLISPGVSAQGTLSITSTELYFEVD 312 (388)
Q Consensus 281 v~~ST~A~liAPGvva~GTLSITssELyFEvD 312 (388)
|.+|++|.+|.|-.+.+|+++||.+.+||..+
T Consensus 2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~ 33 (106)
T PF14844_consen 2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPN 33 (106)
T ss_dssp -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE-
T ss_pred EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEEC
Confidence 67899999999999999999999999999977
No 9
>PF08159 NUC153: NUC153 domain; InterPro: IPR012580 This small domain is found in a novel nucleolar family [].; GO: 0005634 nucleus
Probab=59.05 E-value=2.5 Score=29.33 Aligned_cols=15 Identities=33% Similarity=1.012 Sum_probs=13.5
Q ss_pred EeecCCCCcccCCCC
Q psy17733 373 FEVDEDCPDFRNTDP 387 (388)
Q Consensus 373 Fevded~p~fkk~d~ 387 (388)
|+||+.+|+||+.-|
T Consensus 13 F~ID~t~~~yk~~~~ 27 (30)
T PF08159_consen 13 FAIDPTSPEYKKTNP 27 (30)
T ss_pred cccCCCCHHHHhhCc
Confidence 899999999998765
No 10
>PF15516 BpuSI_N: BpuSI N-terminal domain
Probab=35.44 E-value=9.5 Score=35.32 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.7
Q ss_pred ccccccccceeeeccceeeeceeeE
Q psy17733 348 STRARLISPGVSAQGTLSITSTELY 372 (388)
Q Consensus 348 st~a~liapgvv~~Gtlsit~~ely 372 (388)
|..+|||+||.+.-|++|=|-+|||
T Consensus 114 ~v~~qi~~psp~~~G~F~~~~sE~~ 138 (159)
T PF15516_consen 114 SVEQQIIEPSPFESGDFSRTMSEFF 138 (159)
T ss_pred CeeeeeccCCceeecccccCHHHHH
Confidence 3469999999999999999999987
No 11
>PF08247 ENOD40: ENOD40 protein; InterPro: IPR013186 The soybean early nodulin 40 (ENOD40) mRNA contains two short overlapping ORFs; in vitro translation yields two peptides of 12 and 24 amino acids []. The putative role of the ENOD40 genes has been in favour of organogenesis, such as induction of the cortical cell divisions that lead to initiation of nodule primordia, in developing lateral roots and embryonic tissues. This supports the hypothesis for a role of ENOD40 in lateral organ development [].
Probab=35.29 E-value=5.5 Score=22.82 Aligned_cols=9 Identities=67% Similarity=1.442 Sum_probs=6.4
Q ss_pred CccchHHHHHHH
Q psy17733 1 MLLCSQEWQTSL 12 (388)
Q Consensus 1 MlLcSQEWQ~sl 12 (388)
|=|| ||+||
T Consensus 1 m~l~---wqksi 9 (12)
T PF08247_consen 1 MELC---WQKSI 9 (12)
T ss_pred Ccee---Eeeee
Confidence 5667 88776
No 12
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins.
Probab=28.80 E-value=55 Score=24.19 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=26.4
Q ss_pred CceeeccccccccceeeeccceeeeceeeEEeec
Q psy17733 343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVD 376 (388)
Q Consensus 343 gpv~~st~a~liapgvv~~Gtlsit~~elyFevd 376 (388)
..+.-+..|.|. ..+.++|+|=||..-|||--.
T Consensus 6 E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~ 38 (61)
T smart00568 6 EKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSD 38 (61)
T ss_pred cEEEEEEEeEEC-CCccccEEEEEECCEEEEEcc
Confidence 344556677777 778999999999999999873
No 13
>KOG3083|consensus
Probab=23.65 E-value=1.4e+02 Score=29.96 Aligned_cols=86 Identities=20% Similarity=0.331 Sum_probs=56.8
Q ss_pred HhhhhhHHHhhHHHHhhhhhhhhHHHhcchhhHHHhhh------------chhHHhhhhhhhHHHHHHhhhhHHHHHhhH
Q psy17733 49 LNRMRADDVLKHAELLSHAMKDHIVRVANEAEFILNRM------------RADDVLKHAEFESHCAQTLQERRDEERLCD 116 (388)
Q Consensus 49 ~~~~~a~el~~~~~l~~~~~~dh~~~~a~eaeFILNR~------------RAeDV~Kha~fe~~~a~~~~~~reEE~~Cd 116 (388)
..+--|.|+|-+-++.|.-..+-+..-|++-.+||.-. +|=.-+.-||=|...|.++-+++|-++..
T Consensus 131 Va~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~AvE~KQVAQQEAErarFvVeKAeQqk~a- 209 (271)
T KOG3083|consen 131 VARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEAVEAKQVAQQEAERARFVVEKAEQQKKA- 209 (271)
T ss_pred HHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-
Confidence 45677899999999999877666666666666776422 22233334555666677777777778876
Q ss_pred HHHHHhhhhhhhhHHHHHHHHH
Q psy17733 117 HLISAARRRDQGTAGRILDKVS 138 (388)
Q Consensus 117 ~LI~AaRrRD~~tAarl~dkv~ 138 (388)
..|+| +....|+.|.-|-.
T Consensus 210 avIsA---EGds~aA~li~~sl 228 (271)
T KOG3083|consen 210 AVISA---EGDSKAAELIANSL 228 (271)
T ss_pred heeec---ccchHHHHHHHHHH
Confidence 56655 44556666665544
No 14
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=22.27 E-value=57 Score=33.65 Aligned_cols=17 Identities=35% Similarity=0.644 Sum_probs=15.9
Q ss_pred ccchHHHHHHHHHhHHH
Q psy17733 2 LLCSQEWQTSLQKHAGL 18 (388)
Q Consensus 2 lLcSQEWQ~slQK~AGl 18 (388)
++|++|=|+|+-+|.+|
T Consensus 89 ~~Ct~E~K~sia~HlsL 105 (325)
T PF03213_consen 89 SLCTEETKRSIANHLSL 105 (325)
T ss_pred hhccHHHHHHHHHHHHH
Confidence 58999999999999887
No 15
>PF10635 DisA-linker: DisA bacterial checkpoint controller linker region ; InterPro: IPR018906 The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. the first, N-terminal region, from 1-145 is globular and is represented by IPR003390 from INTERPRO; the next 146-289 residues is this domain that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), thus forming a spine like-linker between domains 1 and 3. The C-terminal residues of domain 3 (IPR000445 from INTERPRO), represent the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branched DNA, but not to duplex or single-stranded DNA, suggesting a role for DisA as a monitor of the presence of stalled replication forks or recombination intermediates via DNA structure-modulated c-di-AMP synthesis []. ; PDB: 3C1Z_A 3C23_A 3C1Y_A 3C21_A.
Probab=21.31 E-value=82 Score=28.85 Aligned_cols=28 Identities=36% Similarity=0.495 Sum_probs=19.6
Q ss_pred HHHHHHhhhhhhhhhhhhhHHhhhhhhH
Q psy17733 19 AFIELINEGRLLSHAMKDHIVRVANEAE 46 (388)
Q Consensus 19 AFIELinEGrll~ha~rdhivRvaNEAe 46 (388)
-.+||-+||||++==+.+-+.-|-+|..
T Consensus 66 yi~ELG~eGRLi~lQleEL~~~v~~~~~ 93 (145)
T PF10635_consen 66 YIVELGTEGRLISLQLEELLGGVEEERE 93 (145)
T ss_dssp HHHHCGGGGHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHhccHHHHH
Confidence 4577777777777777777766666666
Done!