Query psy17733
Match_columns 388
No_of_seqs 91 out of 93
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 21:35:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t77_A Lipopolysaccharide-resp 97.9 9.4E-07 3.2E-11 89.0 -1.2 51 279-329 1-51 (414)
2 3hhm_B NISH2 P85alpha; PI3KCA, 29.8 3.3E+02 0.011 26.8 10.4 41 4-46 152-199 (373)
3 1h6g_A Alpha-1 catenin; adhesi 23.8 2.2E+02 0.0075 26.3 7.6 69 6-77 113-181 (256)
4 3d19_A Conserved metalloprotei 17.8 6.5E+02 0.022 24.1 9.8 90 16-123 92-192 (283)
5 2a07_F Forkhead box protein P2 13.8 91 0.0031 25.4 2.2 14 4-17 43-56 (93)
6 3gxq_A Putative regulator of t 13.2 73 0.0025 23.6 1.3 31 31-61 19-49 (54)
7 2spc_A Spectrin; cytoskeleton; 13.0 4.5E+02 0.015 19.8 6.4 47 91-141 42-88 (107)
8 3s1s_A Restriction endonucleas 11.0 44 0.0015 37.0 -0.7 25 348-372 128-152 (878)
9 2c6y_A Forkhead box protein K2 10.8 1.2E+02 0.0041 25.4 2.1 14 4-17 56-69 (111)
10 2kxc_B ESPF-like protein; IRTK 10.1 95 0.0032 23.0 1.1 19 64-82 5-28 (48)
No 1
>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A
Probab=97.92 E-value=9.4e-07 Score=89.03 Aligned_cols=51 Identities=53% Similarity=0.918 Sum_probs=48.5
Q ss_pred CCceeecccccccCcccccCcccccccccccccCCCCCcccCCCCcccccc
Q psy17733 279 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPERSVIS 329 (388)
Q Consensus 279 gpv~~ST~A~liAPGvva~GTLSITssELyFEvDEddp~f~k~Dp~vl~~~ 329 (388)
|||.+|++|++|.|.++.+|++.||.+.|||+.++++|.|++++++++.|.
T Consensus 1 g~v~~~~~~~~i~p~~~~~G~l~it~~~iyF~~~~~~~~~~~~~~~~~~~~ 51 (414)
T 1t77_A 1 GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYT 51 (414)
T ss_dssp CCCSEEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHC
T ss_pred CCEEEEEEEEEEeeecceeeEEEEeCCEEEEEeCCCcccccccccchhccc
Confidence 799999999999999999999999999999999999999999999987654
No 2
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=29.78 E-value=3.3e+02 Score=26.80 Aligned_cols=41 Identities=37% Similarity=0.323 Sum_probs=27.2
Q ss_pred chHHHHHHHHHhHHHHHHHHHh----hhhhhhhhhhhhHH---hhhhhhH
Q psy17733 4 CSQEWQTSLQKHAGLAFIELIN----EGRLLSHAMKDHIV---RVANEAE 46 (388)
Q Consensus 4 cSQEWQ~slQK~AGlAFIELin----EGrll~ha~rdhiv---RvaNEAe 46 (388)
||||-| +.+.|.-||+|.|. ..++..--+||++. |.||+.|
T Consensus 152 ~~~e~~--~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e 199 (373)
T 3hhm_B 152 TSQEIQ--MKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKE 199 (373)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSH
T ss_pred chHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHH
Confidence 789999 66789999999664 23333333467665 4555555
No 3
>1h6g_A Alpha-1 catenin; adhesion modulation, cytoskeleton; 2.2A {Homo sapiens} SCOP: a.24.9.1 a.24.9.1 PDB: 1l7c_A
Probab=23.81 E-value=2.2e+02 Score=26.27 Aligned_cols=69 Identities=13% Similarity=0.292 Sum_probs=51.7
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhhHHhhhhhhHHHHhhhhhHHHhhHHHHhhhhhhhhHHHhcc
Q psy17733 6 QEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVAN 77 (388)
Q Consensus 6 QEWQ~slQK~AGlAFIELinEGrll~ha~rdhivRvaNEAe~~~~~~~a~el~~~~~l~~~~~~dh~~~~a~ 77 (388)
++|+.++..-..+ +=|.++-+.+|. +-.+||.+-.+.-+-+|....+.++.+.+..+...+. ||+-|++
T Consensus 113 ~~w~~~v~~L~~~-vd~~~~~~~fl~-ase~~i~~~~~~c~~al~~~d~~~~~~~a~~i~~~a~-rv~~v~k 181 (256)
T 1h6g_A 113 EQWEKQVRVLTDA-VDDITSIDDFLA-VSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAA-RVIHVVT 181 (256)
T ss_dssp HHHHHHHHHHHHH-HHHHHCSHHHHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHhcChHHHHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 5788887766543 336666666774 4478999888888888888889999999998887666 6666665
No 4
>3d19_A Conserved metalloprotein; structural genomics, unknown function, PSI-2, protein struct initiative, nysgxrc; 2.30A {Bacillus cereus} SCOP: a.29.13.1 a.29.13.1
Probab=17.85 E-value=6.5e+02 Score=24.07 Aligned_cols=90 Identities=22% Similarity=0.236 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhhhh----hhhhhhhhHHhhhhhhHHHHhhhhh-------HHHhhHHHHhhhhhhhhHHHhcchhhHHHh
Q psy17733 16 AGLAFIELINEGRL----LSHAMKDHIVRVANEAEFILNRMRA-------DDVLKHAELLSHAMKDHIVRVANEAEFILN 84 (388)
Q Consensus 16 AGlAFIELinEGrl----l~ha~rdhivRvaNEAe~~~~~~~a-------~el~~~~~l~~~~~~dh~~~~a~eaeFILN 84 (388)
.-+..++.|.+|++ +.=.+=||++|=||+=--+|....- ..++-|-.|=.+-|+|| |-||.+
T Consensus 92 FK~~il~~iL~cki~~s~~~PllidH~lrEA~~Yl~~L~~l~~g~~~~~~~~~~~e~~FWl~im~dH-------A~FI~~ 164 (283)
T 3d19_A 92 FKRKILGLILTCKLPGQNNFPLLVDHTSREADYFRKRLIQLNEGKLDALPDAIIKENVFFLRIMADH-------AKFIGH 164 (283)
T ss_dssp HHHHHHHHHHTTCSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHcCccccccCcchHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHH-------HHHHHh
Confidence 34556777888888 4445589999877777666665432 33445555556677776 458877
Q ss_pred hhchhHHhhhhhhhHHHHHHhhhhHHHHHhhHHHHHHhh
Q psy17733 85 RMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISAAR 123 (388)
Q Consensus 85 R~RAeDV~Kha~fe~~~a~~~~~~reEE~~Cd~LI~AaR 123 (388)
-+.-.+. +.+..-.+|.+.+|.|+..++
T Consensus 165 ~LDp~Ek-----------~lI~~A~~F~~~Fd~L~~ka~ 192 (283)
T 3d19_A 165 LLDPSER-----------KLVDTARNFSNDFDELMYQAI 192 (283)
T ss_dssp HBCTTCH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 6654321 122224466666777666655
No 5
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=13.83 E-value=91 Score=25.35 Aligned_cols=14 Identities=7% Similarity=0.491 Sum_probs=7.5
Q ss_pred chHHHHHHHHHhHH
Q psy17733 4 CSQEWQTSLQKHAG 17 (388)
Q Consensus 4 cSQEWQ~slQK~AG 17 (388)
|++-|||||+-|.-
T Consensus 43 ~~~gWkNSIRHNLS 56 (93)
T 2a07_F 43 NAATWKNAVRHNLS 56 (93)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CCCccccccceeee
Confidence 34556666665543
No 6
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=13.25 E-value=73 Score=23.57 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=23.7
Q ss_pred hhhhhhhHHhhhhhhHHHHhhhhhHHHhhHH
Q psy17733 31 SHAMKDHIVRVANEAEFILNRMRADDVLKHA 61 (388)
Q Consensus 31 ~ha~rdhivRvaNEAe~~~~~~~a~el~~~~ 61 (388)
---|||.|.+.|.|-+|=---|...|+++.|
T Consensus 19 dpdmkdeiikyaqekdfdnvsqagreilkkg 49 (54)
T 3gxq_A 19 DPDMKDEIIKYAQEKDFDNVSQAGREILKKG 49 (54)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 3468999999999998766667777777665
No 7
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=12.98 E-value=4.5e+02 Score=19.85 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=26.6
Q ss_pred HhhhhhhhHHHHHHhhhhHHHHHhhHHHHHHhhhhhhhhHHHHHHHHHHHh
Q psy17733 91 VLKHAEFESHCAQTLQERRDEERLCDHLISAARRRDQGTAGRILDKVSNIL 141 (388)
Q Consensus 91 V~Kha~fe~~~a~~~~~~reEE~~Cd~LI~AaRrRD~~tAarl~dkv~~iL 141 (388)
+.||..||.....+-..-..-....+.||.. ++--+..+..+...|.
T Consensus 42 lkkh~~fe~~~~~~~~~i~~l~~~a~~L~~~----~h~~~~~I~~r~~~l~ 88 (107)
T 2spc_A 42 IKKHEDFDKAINGHEQKIAALQTVADQLIAQ----NHYASNLVDEKRKQVL 88 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHH
Confidence 4678888887766555444555556566654 2333444444444433
No 8
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Probab=10.95 E-value=44 Score=36.97 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.6
Q ss_pred ccccccccceeeeccceeeeceeeE
Q psy17733 348 STRARLISPGVSAQGTLSITSTELY 372 (388)
Q Consensus 348 st~a~liapgvv~~Gtlsit~~ely 372 (388)
|..+|||+||.+.-|++|=|-+|+|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (878)
T 3s1s_A 128 VVSQQIIEPSPIVVGNFSDTVSEFY 152 (878)
T ss_dssp CGGGCBBTTCSEECCCTTSCHHHHH
T ss_pred CeeeeecCCCceeecccccCHHHHH
Confidence 4579999999999999999999966
No 9
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=10.77 E-value=1.2e+02 Score=25.37 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=8.7
Q ss_pred chHHHHHHHHHhHH
Q psy17733 4 CSQEWQTSLQKHAG 17 (388)
Q Consensus 4 cSQEWQ~slQK~AG 17 (388)
|.+-|||||+-|.-
T Consensus 56 ~~~gWqNSIRHNLS 69 (111)
T 2c6y_A 56 ADKGWQNSIRHNLS 69 (111)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCCeeecchhHHhh
Confidence 45667777776543
No 10
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=10.14 E-value=95 Score=23.01 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHhc-----chhhHH
Q psy17733 64 LSHAMKDHIVRVA-----NEAEFI 82 (388)
Q Consensus 64 ~~~~~~dh~~~~a-----~eaeFI 82 (388)
++|++|||+.-.. +-++||
T Consensus 5 iaQaLk~HLAAye~ska~~~s~~~ 28 (48)
T 2kxc_B 5 VAQRLMQHLAEHGIQPARNMAEHI 28 (48)
T ss_pred HHHHHHHHHHHHhhccchhhhccC
Done!