Your job contains 1 sequence.
>psy17733
MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH
AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLIS
AARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPR
GTSHPNATLEKVAQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELIEG
EVAVVSQSSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQGTL
SITSTELYFEVDEDCPDFRNTDPERSVISGVVVSRTPDLEFGGPVNISTRARLISPGVSA
QGTLSITSTELYFEVDEDCPDFRNTDPE
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy17733
(388 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0086911 - symbol:rg "rugose" species:7227 "Drosoph... 554 4.6e-71 2
MGI|MGI:1933162 - symbol:Lrba "LPS-responsive beige-like ... 463 3.7e-57 2
UNIPROTKB|F1RSR3 - symbol:NBEA "Uncharacterized protein" ... 432 1.3e-55 2
UNIPROTKB|F1P3D0 - symbol:NBEA "Neurobeachin" species:903... 458 1.8e-55 2
UNIPROTKB|E1C6E6 - symbol:LRBA "Uncharacterized protein" ... 456 3.7e-55 2
UNIPROTKB|P50851 - symbol:LRBA "Lipopolysaccharide-respon... 443 3.8e-55 2
UNIPROTKB|F1MF64 - symbol:NBEA "Uncharacterized protein" ... 456 1.5e-54 2
UNIPROTKB|E1BND6 - symbol:Bt.111067 "Uncharacterized prot... 454 5.0e-54 2
MGI|MGI:1347075 - symbol:Nbea "neurobeachin" species:1009... 458 5.7e-54 2
UNIPROTKB|Q8NFP9 - symbol:NBEA "Neurobeachin" species:960... 456 1.2e-53 2
RGD|1311428 - symbol:Lrba "LPS-responsive vesicle traffic... 446 4.2e-53 2
WB|WBGene00004760 - symbol:sel-2 species:6239 "Caenorhabd... 343 2.6e-36 2
>FB|FBgn0086911 [details] [associations]
symbol:rg "rugose" species:7227 "Drosophila melanogaster"
[GO:0016021 "integral to membrane" evidence=IDA] [GO:0008104
"protein localization" evidence=NAS;IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051018 "protein kinase A binding"
evidence=NAS;IDA] [GO:0042675 "compound eye cone cell
differentiation" evidence=IMP] [GO:0007528 "neuromuscular junction
development" evidence=IMP] [GO:0008355 "olfactory learning"
evidence=IMP] [GO:0043025 "neuronal cell body" evidence=IDA]
[GO:0016319 "mushroom body development" evidence=IMP]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
EMBL:Y18278 GO:GO:0016021 GO:GO:0005737 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 EMBL:AE014298 eggNOG:COG2319
Gene3D:2.60.120.200 InterPro:IPR008985 InterPro:IPR013320
SUPFAM:SSF49899 GO:GO:0051018 GO:GO:0042675 Gene3D:1.10.1540.10
Gene3D:2.30.29.40 InterPro:IPR000409 InterPro:IPR023362
Pfam:PF02138 SMART:SM01026 SUPFAM:SSF81837 PROSITE:PS50197
GO:GO:0042462 InterPro:IPR010508 Pfam:PF06469
GeneTree:ENSGT00670000097722 EMBL:AF003622 EMBL:AY051596 PIR:T03094
RefSeq:NP_001138158.1 RefSeq:NP_726978.1 UniGene:Dm.4552
ProteinModelPortal:Q9W4E2 SMR:Q9W4E2 DIP:DIP-17945N IntAct:Q9W4E2
MINT:MINT-343823 STRING:Q9W4E2 PaxDb:Q9W4E2
EnsemblMetazoa:FBtr0299588 GeneID:44531 KEGG:dme:Dmel_CG6775
CTD:44531 FlyBase:FBgn0086911 InParanoid:Q9W4E2 OrthoDB:EOG42RBP3
GenomeRNAi:44531 NextBio:837376 Bgee:Q9W4E2 GermOnline:CG6775
Uniprot:Q9W4E2
Length = 3578
Score = 554 (200.1 bits), Expect = 4.6e-71, Sum P(2) = 4.6e-71
Identities = 111/193 (57%), Positives = 135/193 (69%)
Query: 56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
+++ LLSHAMKDHIVRVANEAEFILNRMRADDVLKHA+FES CAQTL ERR+EER+C
Sbjct: 2580 ELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHADFESQCAQTLLERREEERMC 2639
Query: 116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNE----------AARTQEFWKLDSW 165
DHLI+AARRRD A R+L+KV NI+ N+HGAW + A + +WKLD+W
Sbjct: 2640 DHLITAARRRDNVIASRLLEKVRNIMCNRHGAWGDSSSTSSGGAIVGAVQKSPYWKLDAW 2699
Query: 166 EDDARRRKRFVRNPRGTSHPNATLEKVAQKEVPEDAIAHANQEFHXXXXXXXXXXXXNGA 225
EDDARRRKR V+NPRG+SHP ATL+ + PEDAI EFH +G
Sbjct: 2700 EDDARRRKRMVQNPRGSSHPQATLKAALENGGPEDAILQTRDEFHTQIAVSRTHP--SGQ 2757
Query: 226 NTCSELMDDSELI 238
+ EL+DD+EL+
Sbjct: 2758 HN-GELLDDAELL 2769
Score = 313 (115.2 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 67/95 (70%), Positives = 72/95 (75%)
Query: 1 MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
MLLCSQEWQ SLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH
Sbjct: 2559 MLLCSQEWQNSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 2618
Query: 61 AELLSHAMKDHIVRVANEA---EFILNRMRADDVL 92
A+ S + + R E I R D+V+
Sbjct: 2619 ADFESQCAQTLLERREEERMCDHLITAARRRDNVI 2653
Score = 220 (82.5 bits), Expect = 4.6e-71, Sum P(2) = 4.6e-71
Identities = 45/77 (58%), Positives = 60/77 (77%)
Query: 248 SSQANGANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLISPGVSAQGTLSITSTEL 307
S Q NG EL+DD+EL+ ++D+DLTGPVNIST+ARLI+PG+ A GT+SITSTE+
Sbjct: 2755 SGQHNG-----ELLDDAELLIEDRELDLDLTGPVNISTKARLIAPGLVAPGTVSITSTEM 2809
Query: 308 YFEVDEDCPDFRNTDPE 324
+FEVDE+ P+F+ D E
Sbjct: 2810 FFEVDEEHPEFQKIDGE 2826
Score = 177 (67.4 bits), Expect = 1.6e-66, Sum P(2) = 1.6e-66
Identities = 34/58 (58%), Positives = 46/58 (79%)
Query: 331 VVVSRTPDLEFGGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 388
++ R DL+ GPVNIST+ARLI+PG+ A GT+SITSTE++FEVDE+ P+F+ D E
Sbjct: 2769 LIEDRELDLDLTGPVNISTKARLIAPGLVAPGTVSITSTEMFFEVDEEHPEFQKIDGE 2826
Score = 44 (20.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 120 SAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQ 157
+A + G ++D N++S+KH +N+ + Q
Sbjct: 2378 AAVQAASAGIVVGLVDNRGNVISDKHDPSHHNQQQQQQ 2415
>MGI|MGI:1933162 [details] [associations]
symbol:Lrba "LPS-responsive beige-like anchor" species:10090
"Mus musculus" [GO:0005764 "lysosome" evidence=IDA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IEA] [GO:0005802 "trans-Golgi network" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0007165 "signal
transduction" evidence=TAS] [GO:0008104 "protein localization"
evidence=ISA] [GO:0016020 "membrane" evidence=IEA] [GO:0016021
"integral to membrane" evidence=IEA] [GO:0016023 "cytoplasmic
membrane-bounded vesicle" evidence=IDA] [GO:0016197 "endosomal
transport" evidence=TAS] [GO:0051018 "protein kinase A binding"
evidence=ISA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 InterPro:IPR016024 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 MGI:MGI:1933162 GO:GO:0005783
GO:GO:0016021 GO:GO:0005886 GO:GO:0005794 GO:GO:0007165
GO:GO:0008104 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0005764
GO:GO:0016197 GO:GO:0016023 Gene3D:2.60.120.200 InterPro:IPR008985
InterPro:IPR013320 SUPFAM:SSF49899 GO:GO:0005802 GO:GO:0051018
eggNOG:NOG236271 Gene3D:1.10.1540.10 Gene3D:2.30.29.40
InterPro:IPR000409 InterPro:IPR023362 Pfam:PF02138 SMART:SM01026
SUPFAM:SSF81837 PROSITE:PS50197 CTD:987 HOGENOM:HOG000082375
ChiTaRS:LRBA InterPro:IPR010508 Pfam:PF06469 EMBL:AF187731
EMBL:AF188506 EMBL:AF188507 IPI:IPI00227851 IPI:IPI00816903
IPI:IPI01008129 RefSeq:NP_001071155.1 RefSeq:NP_001071156.1
RefSeq:NP_109620.2 UniGene:Mm.439825 HSSP:P50851
ProteinModelPortal:Q9ESE1 SMR:Q9ESE1 IntAct:Q9ESE1 STRING:Q9ESE1
PhosphoSite:Q9ESE1 PaxDb:Q9ESE1 PRIDE:Q9ESE1 GeneID:80877
KEGG:mmu:80877 UCSC:uc008prg.1 UCSC:uc008pri.1 OrthoDB:EOG4TXBQZ
NextBio:350175 Genevestigator:Q9ESE1 Uniprot:Q9ESE1
Length = 2856
Score = 463 (168.0 bits), Expect = 3.7e-57, Sum P(2) = 3.7e-57
Identities = 82/152 (53%), Positives = 113/152 (74%)
Query: 56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
+++ LLS MKDH+VRVANEAEFIL+R RA+D+ +HAEFES CAQ ++R+EE++C
Sbjct: 1880 ELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREEEKMC 1939
Query: 116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
DHLI AA+ RD TA +++ K+ N+L++KHGAW + +R +EFW+LD WEDD RRR+RF
Sbjct: 1940 DHLIRAAKYRDHVTATQLIQKIINLLTDKHGAWGSSAVSRPREFWRLDYWEDDLRRRRRF 1999
Query: 176 VRNPRGTSHPNATLEKVAQKEVPEDAIAHANQ 207
VRNP G++HP ATL+ + ED +A Q
Sbjct: 2000 VRNPLGSTHPEATLKTAVEHAADEDILAKGKQ 2031
Score = 263 (97.6 bits), Expect = 1.7e-33, Sum P(2) = 1.7e-33
Identities = 50/65 (76%), Positives = 58/65 (89%)
Query: 1 MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
MLLCSQEWQ S+QK+AGLAFIEL+NEGRLLS MKDH+VRVANEAEFIL+R RA+D+ +H
Sbjct: 1859 MLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRH 1918
Query: 61 AELLS 65
AE S
Sbjct: 1919 AEFES 1923
Score = 177 (67.4 bits), Expect = 3.7e-57, Sum P(2) = 3.7e-57
Identities = 36/93 (38%), Positives = 61/93 (65%)
Query: 233 DDSELIEGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDID-LTGPVNISTRARLIS 291
D+ L +G+ ++ SQ+ + + L D + + + D++ L GPV++ST A+L++
Sbjct: 2022 DEDILAKGKQSIKSQALGNQNSENEALLEGDDDTLSSVDEKDLENLAGPVSLSTPAQLVA 2081
Query: 292 PGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 324
P V +GTLS+TS+ELYFEVDE+ P+F+ DP+
Sbjct: 2082 PSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPK 2114
Score = 158 (60.7 bits), Expect = 3.7e-55, Sum P(2) = 3.7e-55
Identities = 30/52 (57%), Positives = 42/52 (80%)
Query: 338 DLE-FGGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 388
DLE GPV++ST A+L++P V +GTLS+TS+ELYFEVDE+ P+F+ DP+
Sbjct: 2063 DLENLAGPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPK 2114
Score = 43 (20.2 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 37 HIVRVANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVANEAEFILNRMRADD 90
H R ++E I R + D + EL +H M +V E + +L++ ++
Sbjct: 984 HFTRNSDENSSI-GRASSIDSASNTELQTHDMSSDEKKVERENQELLDQATVEE 1036
Score = 39 (18.8 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 141 LSNKHGAWAYNEAARTQEFWKLDSWEDD 168
LS GA AA E + +SWEDD
Sbjct: 2262 LSKPIGALNPKRAAFFAE--RFESWEDD 2287
Score = 38 (18.4 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 299 TLSITSTELYFEVDED 314
TLSIT +++ FE+ ++
Sbjct: 915 TLSITHSKVTFEIHKE 930
>UNIPROTKB|F1RSR3 [details] [associations]
symbol:NBEA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0012505 "endomembrane system" evidence=IEA] [GO:0008104
"protein localization" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005802
"trans-Golgi network" evidence=IEA] Gene3D:1.10.1540.10
Gene3D:2.30.29.40 InterPro:IPR000409 InterPro:IPR023362
Pfam:PF02138 SUPFAM:SSF81837 PROSITE:PS50197 InterPro:IPR010508
Pfam:PF06469 GeneTree:ENSGT00670000097722 EMBL:AEMK01168515
EMBL:CU633425 EMBL:CU928064 Ensembl:ENSSSCT00000010247
Uniprot:F1RSR3
Length = 378
Score = 432 (157.1 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 80/135 (59%), Positives = 100/135 (74%)
Query: 68 MKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISAARRRDQ 127
MKDHIVRVANEAEFILNR RA+DV KHAEFES CAQ +RR+EE++CDHLISAA+ RD
Sbjct: 1 MKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAADRREEEKMCDHLISAAKHRDH 60
Query: 128 GTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRFVRNPRGTSHPNA 187
TA ++ K+ NIL+NKHGAW ++ +FW+LD WEDD RRR+RFVRN G++H A
Sbjct: 61 VTANQLKQKILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRFVRNAFGSTHAEA 120
Query: 188 TLEKVAQKEVPEDAI 202
L+ + ED +
Sbjct: 121 LLKAAIEYGTEEDVV 135
Score = 159 (61.0 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 38/90 (42%), Positives = 56/90 (62%)
Query: 234 DSELIEGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDID-LTGPVNISTRARLISP 292
+ ++++ + SQ+ A T L D + + + +ID L GPV +ST A+LI+P
Sbjct: 131 EEDVVKSKKTFRSQAVVNQNAETELMLEGDDDAVSLLQEKEIDNLAGPVVLSTPAQLIAP 190
Query: 293 GVSAQGTLSITSTELYFEVDEDCPDFRNTD 322
V A+GTLSIT+TE+YFEVDED P F+ D
Sbjct: 191 VVVAKGTLSITTTEIYFEVDEDDPAFKKID 220
Score = 143 (55.4 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
Identities = 29/44 (65%), Positives = 36/44 (81%)
Query: 343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTD 386
GPV +ST A+LI+P V A+GTLSIT+TE+YFEVDED P F+ D
Sbjct: 177 GPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDPAFKKID 220
Score = 131 (51.2 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 27/32 (84%), Positives = 28/32 (87%)
Query: 34 MKDHIVRVANEAEFILNRMRADDVLKHAELLS 65
MKDHIVRVANEAEFILNR RA+DV KHAE S
Sbjct: 1 MKDHIVRVANEAEFILNRQRAEDVHKHAEFES 32
>UNIPROTKB|F1P3D0 [details] [associations]
symbol:NBEA "Neurobeachin" species:9031 "Gallus gallus"
[GO:0005802 "trans-Golgi network" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] [GO:0012505
"endomembrane system" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 InterPro:IPR016024 Pfam:PF00400 PROSITE:PS50294
SMART:SM00320 GO:GO:0005829 GO:GO:0005886 GO:GO:0008104
SUPFAM:SSF48371 Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0012505
Gene3D:2.60.120.200 InterPro:IPR008985 InterPro:IPR013320
SUPFAM:SSF49899 GO:GO:0005802 Gene3D:1.10.1540.10 Gene3D:2.30.29.40
InterPro:IPR000409 InterPro:IPR023362 Pfam:PF02138 SMART:SM01026
SUPFAM:SSF81837 PROSITE:PS50197 InterPro:IPR010508 Pfam:PF06469
GeneTree:ENSGT00670000097722 OMA:VDLTCTS EMBL:AADN02005290
EMBL:AADN02005287 EMBL:AADN02005273 EMBL:AADN02005274
EMBL:AADN02005275 EMBL:AADN02005276 EMBL:AADN02005277
EMBL:AADN02005278 EMBL:AADN02005279 EMBL:AADN02005280
EMBL:AADN02005281 EMBL:AADN02005282 EMBL:AADN02005283
EMBL:AADN02005284 EMBL:AADN02005285 EMBL:AADN02005286
EMBL:AADN02005288 EMBL:AADN02005289 IPI:IPI00578509
Ensembl:ENSGALT00000027557 ArrayExpress:F1P3D0 Uniprot:F1P3D0
Length = 2855
Score = 458 (166.3 bits), Expect = 1.8e-55, Sum P(2) = 1.8e-55
Identities = 84/147 (57%), Positives = 108/147 (73%)
Query: 56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
+++ LL HAMKDHIVRVANEAEFILNR RA+DV KHAEFES CAQ +RR+EE++C
Sbjct: 1867 ELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAADRREEEKMC 1926
Query: 116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
DHLISAA+ RD TA ++ K+ NIL+NKHGAW ++ +FW+LD WEDD RRR+RF
Sbjct: 1927 DHLISAAKHRDHVTANQLKQKILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRF 1986
Query: 176 VRNPRGTSHPNATLEKVAQKEVPEDAI 202
VRN G++H +A L+ + ED +
Sbjct: 1987 VRNAFGSTHADALLKAAVEYGTEEDVV 2013
Score = 282 (104.3 bits), Expect = 6.9e-37, Sum P(2) = 6.9e-37
Identities = 56/65 (86%), Positives = 59/65 (90%)
Query: 1 MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
MLLCSQEWQ S+QK+AGLAFIELINEGRLL HAMKDHIVRVANEAEFILNR RA+DV KH
Sbjct: 1846 MLLCSQEWQNSIQKNAGLAFIELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKH 1905
Query: 61 AELLS 65
AE S
Sbjct: 1906 AEFES 1910
Score = 166 (63.5 bits), Expect = 1.8e-55, Sum P(2) = 1.8e-55
Identities = 38/92 (41%), Positives = 58/92 (63%)
Query: 234 DSELIEGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDID-LTGPVNISTRARLISP 292
+ ++++ + SQ+ A T L D + + + +ID L GPV +ST A+L++P
Sbjct: 2009 EEDVVKSKKTFRSQAVVNQNAETELMLEGDDDAVSLLQEKEIDNLAGPVVLSTPAQLVAP 2068
Query: 293 GVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 324
V A+GTLSIT+TE+YFEVDED P F+ DP+
Sbjct: 2069 VVVAKGTLSITTTEIYFEVDEDDPAFKKIDPK 2100
Score = 150 (57.9 bits), Expect = 8.7e-54, Sum P(2) = 8.7e-54
Identities = 29/46 (63%), Positives = 38/46 (82%)
Query: 343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 388
GPV +ST A+L++P V A+GTLSIT+TE+YFEVDED P F+ DP+
Sbjct: 2055 GPVVLSTPAQLVAPVVVAKGTLSITTTEIYFEVDEDDPAFKKIDPK 2100
>UNIPROTKB|E1C6E6 [details] [associations]
symbol:LRBA "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0016023 "cytoplasmic membrane-bounded vesicle"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 InterPro:IPR016024 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0016023
Gene3D:2.60.120.200 InterPro:IPR008985 InterPro:IPR013320
SUPFAM:SSF49899 Gene3D:1.10.1540.10 Gene3D:2.30.29.40
InterPro:IPR000409 InterPro:IPR023362 Pfam:PF02138 SMART:SM01026
SUPFAM:SSF81837 PROSITE:PS50197 OMA:EEDPNFK InterPro:IPR010508
Pfam:PF06469 GeneTree:ENSGT00670000097722 EMBL:AADN02016188
EMBL:AADN02016179 EMBL:AADN02016180 EMBL:AADN02016181
EMBL:AADN02016182 EMBL:AADN02016183 EMBL:AADN02016184
EMBL:AADN02016185 EMBL:AADN02016186 EMBL:AADN02016187
IPI:IPI00580943 ProteinModelPortal:E1C6E6
Ensembl:ENSGALT00000016356 Uniprot:E1C6E6
Length = 2850
Score = 456 (165.6 bits), Expect = 3.7e-55, Sum P(2) = 3.7e-55
Identities = 82/152 (53%), Positives = 113/152 (74%)
Query: 56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
+++ LLS MKDH+VRVANEAEFIL+R RA+D+ +HAEFES CAQ ++R+EE++C
Sbjct: 1867 ELVNEGRLLSQNMKDHLVRVANEAEFILSRQRAEDINRHAEFESLCAQYSADKREEEKMC 1926
Query: 116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
HLI+AA+ RDQ TA +++ K+ NIL++KHGAW + +R +EFW+LD WEDD RRR+RF
Sbjct: 1927 HHLITAAKYRDQVTATQLIQKIVNILTDKHGAWGSSAPSRPREFWRLDYWEDDLRRRRRF 1986
Query: 176 VRNPRGTSHPNATLEKVAQKEVPEDAIAHANQ 207
VRNP G++HP ATL+ + ED + Q
Sbjct: 1987 VRNPLGSTHPEATLKAAGEHAPDEDILVKGKQ 2018
Score = 261 (96.9 bits), Expect = 6.5e-32, Sum P(2) = 6.5e-32
Identities = 50/65 (76%), Positives = 58/65 (89%)
Query: 1 MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
MLLCSQEWQ S+QK+AGLAFIEL+NEGRLLS MKDH+VRVANEAEFIL+R RA+D+ +H
Sbjct: 1846 MLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQNMKDHLVRVANEAEFILSRQRAEDINRH 1905
Query: 61 AELLS 65
AE S
Sbjct: 1906 AEFES 1910
Score = 165 (63.1 bits), Expect = 3.7e-55, Sum P(2) = 3.7e-55
Identities = 37/95 (38%), Positives = 62/95 (65%)
Query: 233 DDSELIEGEVAVVSQSSQANGANTCSELM--DDSELIEGGGDIDID-LTGPVNISTRARL 289
D+ L++G+ ++ SQ+ N+ SE++ D ++ + +++ LTGPV +S A+L
Sbjct: 2009 DEDILVKGKQSIKSQA--LGNQNSESEILLEGDDDITSFIEEREVENLTGPVALSAPAQL 2066
Query: 290 ISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 324
++P V +GTLSIT +ELYFEVDE+ P F+ DP+
Sbjct: 2067 VAPSVVVKGTLSITLSELYFEVDEEDPSFKKIDPK 2101
Score = 138 (53.6 bits), Expect = 2.6e-52, Sum P(2) = 2.6e-52
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 388
GPV +S A+L++P V +GTLSIT +ELYFEVDE+ P F+ DP+
Sbjct: 2056 GPVALSAPAQLVAPSVVVKGTLSITLSELYFEVDEEDPSFKKIDPK 2101
Score = 40 (19.1 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 228 CSELMDDSELIEGEVAVVSQS-SQA--NGANTCSELMDDS 264
CSEL + E I+ V+ +S ++A + + EL++++
Sbjct: 1032 CSELSTEPEAIKPSVSEISSGIAEAIEDSLSKAQELVEET 1071
Score = 38 (18.4 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 141 LSNKHGAWAYNEAARTQEFWKLDSWEDD 168
LS GA AA E + +SWEDD
Sbjct: 2249 LSKPIGALNPKRAAFFAE--RYESWEDD 2274
>UNIPROTKB|P50851 [details] [associations]
symbol:LRBA "Lipopolysaccharide-responsive and beige-like
anchor protein" species:9606 "Homo sapiens" [GO:0016021 "integral
to membrane" evidence=IEA] [GO:0016023 "cytoplasmic
membrane-bounded vesicle" evidence=IEA] [GO:0005764 "lysosome"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 InterPro:IPR016024
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005783 GO:GO:0016021 GO:GO:0005886 GO:GO:0005794
SUPFAM:SSF48371 Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678
GO:GO:0005764 GO:GO:0016023 Gene3D:2.60.120.200 InterPro:IPR008985
InterPro:IPR013320 SUPFAM:SSF49899 eggNOG:NOG236271
Gene3D:1.10.1540.10 Gene3D:2.30.29.40 InterPro:IPR000409
InterPro:IPR023362 Pfam:PF02138 SMART:SM01026 SUPFAM:SSF81837
PROSITE:PS50197 Orphanet:77303 EMBL:AC093748 EMBL:AF216648
EMBL:AF217149 EMBL:AF467287 EMBL:AC092544 EMBL:AC092612
EMBL:AC097373 EMBL:AC104796 EMBL:AC110813 EMBL:M83822
IPI:IPI00002255 IPI:IPI00945818 RefSeq:NP_001186211.2
RefSeq:NP_006717.2 UniGene:Hs.480938 PDB:1T77 PDBsum:1T77
ProteinModelPortal:P50851 SMR:P50851 IntAct:P50851
MINT:MINT-7004641 STRING:P50851 PhosphoSite:P50851 DMDM:259016388
PaxDb:P50851 PRIDE:P50851 DNASU:987 Ensembl:ENST00000357115
Ensembl:ENST00000510413 GeneID:987 KEGG:hsa:987 UCSC:uc003ilu.4
UCSC:uc010ipj.3 CTD:987 GeneCards:GC04M151185 HGNC:HGNC:1742
HPA:HPA019366 HPA:HPA023597 MIM:606453 MIM:614700
neXtProt:NX_P50851 PharmGKB:PA30444 HOGENOM:HOG000082375
HOVERGEN:HBG012582 InParanoid:P50851 OMA:EEDPNFK ChiTaRS:LRBA
EvolutionaryTrace:P50851 GenomeRNAi:987 NextBio:4142
ArrayExpress:P50851 Bgee:P50851 CleanEx:HS_LRBA
Genevestigator:P50851 GermOnline:ENSG00000198589 InterPro:IPR010508
Pfam:PF06469 Uniprot:P50851
Length = 2863
Score = 443 (161.0 bits), Expect = 3.8e-55, Sum P(2) = 3.8e-55
Identities = 81/142 (57%), Positives = 109/142 (76%)
Query: 56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
+++ LLS MKDH+VRVANEAEFIL+R RA+D+ +HAEFES CAQ ++R++E++C
Sbjct: 1876 ELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREDEKMC 1935
Query: 116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
DHLI AA+ RD TA +++ K+ NIL++KHGAW + +R EFW+LD WEDD RRR+RF
Sbjct: 1936 DHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGNSAVSRPLEFWRLDYWEDDLRRRRRF 1995
Query: 176 VRNPRGTSHPNATLEKVAQKEV 197
VRNP G++HP ATL K A + V
Sbjct: 1996 VRNPLGSTHPEATL-KTAVEHV 2016
Score = 264 (98.0 bits), Expect = 9.2e-34, Sum P(2) = 9.2e-34
Identities = 56/104 (53%), Positives = 73/104 (70%)
Query: 1 MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
MLLCSQEWQ S+QK+AGLAFIEL+NEGRLLS MKDH+VRVANEAEFIL+R RA+D+ +H
Sbjct: 1855 MLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRH 1914
Query: 61 AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQT 104
AE S + A++ E + D +++ A++ H T
Sbjct: 1915 AEFESLCAQYS----ADKRE---DEKMCDHLIRAAKYRDHVTAT 1951
Score = 178 (67.7 bits), Expect = 3.8e-55, Sum P(2) = 3.8e-55
Identities = 39/98 (39%), Positives = 63/98 (64%)
Query: 229 SELMDDSELIEGEVAVVSQS-SQANGANTCSELMDDSELIEGGGDIDID-LTGPVNISTR 286
S+ D+ L +G+ ++ SQ+ N N L D + + + D++ L GPV++ST
Sbjct: 2025 SKATDEDILAKGKQSIRSQALGNQNSENEIL-LEGDDDTLSSVDEKDLENLAGPVSLSTP 2083
Query: 287 ARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 324
A+L++P V +GTLS+TS+ELYFEVDE+ P+F+ DP+
Sbjct: 2084 AQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPK 2121
Score = 158 (60.7 bits), Expect = 4.9e-53, Sum P(2) = 4.9e-53
Identities = 30/52 (57%), Positives = 42/52 (80%)
Query: 338 DLE-FGGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 388
DLE GPV++ST A+L++P V +GTLS+TS+ELYFEVDE+ P+F+ DP+
Sbjct: 2070 DLENLAGPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPK 2121
Score = 38 (18.4 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 141 LSNKHGAWAYNEAARTQEFWKLDSWEDD 168
LS GA AA E + +SWEDD
Sbjct: 2269 LSKPIGALNPKRAAFFAE--RYESWEDD 2294
Score = 38 (18.4 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 299 TLSITSTELYFEVDED 314
TLSIT +++ FE+ ++
Sbjct: 915 TLSITHSKVTFEIHKE 930
>UNIPROTKB|F1MF64 [details] [associations]
symbol:NBEA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0012505 "endomembrane system" evidence=IEA] [GO:0008104
"protein localization" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005802
"trans-Golgi network" evidence=IEA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 InterPro:IPR016024
Pfam:PF00400 PROSITE:PS50294 SMART:SM00320 GO:GO:0005829
GO:GO:0005886 GO:GO:0008104 SUPFAM:SSF48371 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0012505 Gene3D:2.60.120.200
InterPro:IPR008985 InterPro:IPR013320 SUPFAM:SSF49899 GO:GO:0005802
Gene3D:1.10.1540.10 Gene3D:2.30.29.40 InterPro:IPR000409
InterPro:IPR023362 Pfam:PF02138 SMART:SM01026 SUPFAM:SSF81837
PROSITE:PS50197 InterPro:IPR010508 Pfam:PF06469
GeneTree:ENSGT00670000097722 OMA:VDLTCTS EMBL:DAAA02033042
EMBL:DAAA02033043 EMBL:DAAA02033044 EMBL:DAAA02033045
EMBL:DAAA02033046 EMBL:DAAA02033047 IPI:IPI00708545
Ensembl:ENSBTAT00000061623 Uniprot:F1MF64
Length = 2809
Score = 456 (165.6 bits), Expect = 1.5e-54, Sum P(2) = 1.5e-54
Identities = 84/147 (57%), Positives = 107/147 (72%)
Query: 56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
+++ LL HAMKDHIVRVANEAEFILNR RA+DV KHAEFES CAQ +RR+EE++C
Sbjct: 1825 ELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAADRREEEKMC 1884
Query: 116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
DHLISAA+ RD TA ++ K+ NIL+NKHGAW ++ +FW+LD WEDD RRR+RF
Sbjct: 1885 DHLISAAKHRDHVTANQLKQKILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRF 1944
Query: 176 VRNPRGTSHPNATLEKVAQKEVPEDAI 202
VRN G++H A L+ + ED +
Sbjct: 1945 VRNAFGSTHAEALLKAAIEYGTEEDVV 1971
Score = 282 (104.3 bits), Expect = 3.6e-36, Sum P(2) = 3.6e-36
Identities = 56/65 (86%), Positives = 59/65 (90%)
Query: 1 MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
MLLCSQEWQ S+QK+AGLAFIELINEGRLL HAMKDHIVRVANEAEFILNR RA+DV KH
Sbjct: 1804 MLLCSQEWQNSIQKNAGLAFIELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKH 1863
Query: 61 AELLS 65
AE S
Sbjct: 1864 AEFES 1868
Score = 159 (61.0 bits), Expect = 1.5e-54, Sum P(2) = 1.5e-54
Identities = 38/90 (42%), Positives = 56/90 (62%)
Query: 234 DSELIEGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDID-LTGPVNISTRARLISP 292
+ ++++ + SQ+ A T L D + + + +ID L GPV +ST A+LI+P
Sbjct: 1967 EEDVVKSKKTFRSQAIVNQNAETELMLEGDDDAVSLLQEKEIDNLAGPVVLSTPAQLIAP 2026
Query: 293 GVSAQGTLSITSTELYFEVDEDCPDFRNTD 322
V A+GTLSIT+TE+YFEVDED P F+ D
Sbjct: 2027 VVVAKGTLSITTTEIYFEVDEDDPAFKKID 2056
Score = 143 (55.4 bits), Expect = 7.4e-53, Sum P(2) = 7.4e-53
Identities = 29/44 (65%), Positives = 36/44 (81%)
Query: 343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTD 386
GPV +ST A+LI+P V A+GTLSIT+TE+YFEVDED P F+ D
Sbjct: 2013 GPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDPAFKKID 2056
Score = 38 (18.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 11/46 (23%), Positives = 17/46 (36%)
Query: 100 HCAQTLQERRDEERLCDHLISAARRRDQGTAGRILDK--VSNILSN 143
+C + Q +RD H S + QG K + N+ N
Sbjct: 1345 NCLECRQRQRDRGNKSSHGSSKPQEAPQGVTATAASKTPLENVPGN 1390
>UNIPROTKB|E1BND6 [details] [associations]
symbol:Bt.111067 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0016023 "cytoplasmic membrane-bounded vesicle"
evidence=IEA] InterPro:IPR017986 InterPro:IPR001680
InterPro:IPR015943 InterPro:IPR016024 Pfam:PF00400 PROSITE:PS50082
PROSITE:PS50294 SMART:SM00320 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0016023
Gene3D:2.60.120.200 InterPro:IPR008985 InterPro:IPR013320
SUPFAM:SSF49899 Gene3D:1.10.1540.10 Gene3D:2.30.29.40
InterPro:IPR000409 InterPro:IPR023362 Pfam:PF02138 SMART:SM01026
SUPFAM:SSF81837 PROSITE:PS50197 OMA:EEDPNFK InterPro:IPR010508
Pfam:PF06469 GeneTree:ENSGT00670000097722 EMBL:DAAA02044210
EMBL:DAAA02044211 EMBL:DAAA02044212 EMBL:DAAA02044213
EMBL:DAAA02044214 EMBL:DAAA02044215 EMBL:DAAA02044216
EMBL:DAAA02044217 EMBL:DAAA02044218 IPI:IPI00924100
Ensembl:ENSBTAT00000061161 Uniprot:E1BND6
Length = 2786
Score = 454 (164.9 bits), Expect = 5.0e-54, Sum P(2) = 5.0e-54
Identities = 91/201 (45%), Positives = 126/201 (62%)
Query: 56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESH--CAQTLQERRDEER 113
+++ LLS MKDH+VRVANEAEFIL+R RA+D+ +HAEFES CAQ ++R++E+
Sbjct: 1807 ELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESKSLCAQYSADKREDEK 1866
Query: 114 LCDHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRK 173
+CDHLI AA+ RD TA +++ K+ NIL++KHGAW + +R +EFW+LD WEDD RRR+
Sbjct: 1867 MCDHLIRAAKYRDHVTATQLIQKIINILTDKHGAWGNSAVSRPREFWRLDYWEDDLRRRR 1926
Query: 174 RFVRNPRGTSHPNATLEKVAQKEVPEDAIAHANQEFHXXXXXXXXX---XXXNGANTCSE 230
RFVRNP G++HP ATL+ + ED +A Q G +
Sbjct: 1927 RFVRNPLGSTHPEATLKTAVEHAADEDILAKGKQSIKSQALGNQNSENETLLEGDDDTLS 1986
Query: 231 LMDDSELIEGEVAVVSQSSQA 251
MD+ +L E VS S+ A
Sbjct: 1987 SMDEKDL-ENLTGPVSLSTPA 2006
Score = 270 (100.1 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 57/104 (54%), Positives = 73/104 (70%)
Query: 1 MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
MLLCSQEWQ S+QK+AGLAFIEL+NEGRLLS MKDH+VRVANEAEFIL+R RA+D+ +H
Sbjct: 1786 MLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRH 1845
Query: 61 AELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQT 104
AE S ++ E E +M D +++ A++ H T
Sbjct: 1846 AEFESKSLCAQYSADKREDE----KM-CDHLIRAAKYRDHVTAT 1884
Score = 182 (69.1 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 37/93 (39%), Positives = 62/93 (66%)
Query: 233 DDSELIEGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDID-LTGPVNISTRARLIS 291
D+ L +G+ ++ SQ+ + + L D + + + D++ LTGPV++ST A+L++
Sbjct: 1951 DEDILAKGKQSIKSQALGNQNSENETLLEGDDDTLSSMDEKDLENLTGPVSLSTPAQLVA 2010
Query: 292 PGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 324
P V +GTLS+TS+ELYFEVDE+ P+F+ DP+
Sbjct: 2011 PSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPK 2043
Score = 156 (60.0 bits), Expect = 5.0e-54, Sum P(2) = 5.0e-54
Identities = 30/52 (57%), Positives = 42/52 (80%)
Query: 338 DLE-FGGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 388
DLE GPV++ST A+L++P V +GTLS+TS+ELYFEVDE+ P+F+ DP+
Sbjct: 1992 DLENLTGPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPK 2043
Score = 38 (18.4 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 141 LSNKHGAWAYNEAARTQEFWKLDSWEDD 168
LS GA AA E + +SWEDD
Sbjct: 2191 LSKPIGALNPKRAAFFAE--RYESWEDD 2216
Score = 38 (18.4 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 299 TLSITSTELYFEVDED 314
TLSIT +++ FE+ ++
Sbjct: 844 TLSITHSKVTFEIHKE 859
>MGI|MGI:1347075 [details] [associations]
symbol:Nbea "neurobeachin" species:10090 "Mus musculus"
[GO:0005802 "trans-Golgi network" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0006605 "protein targeting" evidence=ISS] [GO:0006892
"post-Golgi vesicle-mediated transport" evidence=NAS] [GO:0008104
"protein localization" evidence=IDA] [GO:0012505 "endomembrane
system" evidence=IDA] [GO:0016020 "membrane" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IDA] [GO:0030054
"cell junction" evidence=IEA] [GO:0045202 "synapse" evidence=IEA]
[GO:0045211 "postsynaptic membrane" evidence=NAS] [GO:0051018
"protein kinase A binding" evidence=NAS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 InterPro:IPR016024
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
MGI:MGI:1347075 GO:GO:0005829 GO:GO:0005886 GO:GO:0006605
GO:GO:0019901 SUPFAM:SSF48371 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0030054 GO:GO:0045211 GO:GO:0012505
Gene3D:2.60.120.200 InterPro:IPR008985 InterPro:IPR013320
SUPFAM:SSF49899 GO:GO:0005802 GO:GO:0051018 GO:GO:0006892
eggNOG:NOG236271 Gene3D:1.10.1540.10 Gene3D:2.30.29.40
InterPro:IPR000409 InterPro:IPR023362 Pfam:PF02138 SMART:SM01026
SUPFAM:SSF81837 PROSITE:PS50197 HOVERGEN:HBG012582
InterPro:IPR010508 Pfam:PF06469 OrthoDB:EOG4TXBQZ
GeneTree:ENSGT00670000097722 CTD:26960 ChiTaRS:NBEA EMBL:Y18276
EMBL:AK043125 EMBL:AF072372 IPI:IPI00320831 IPI:IPI00320836
IPI:IPI00421047 IPI:IPI00469204 RefSeq:NP_085098.1
UniGene:Mm.384353 ProteinModelPortal:Q9EPN1 SMR:Q9EPN1
IntAct:Q9EPN1 STRING:Q9EPN1 PhosphoSite:Q9EPN1 PaxDb:Q9EPN1
PRIDE:Q9EPN1 Ensembl:ENSMUST00000029374 GeneID:26422 KEGG:mmu:26422
UCSC:uc008pgt.2 UCSC:uc008pgu.2 HOGENOM:HOG000007936
InParanoid:Q9EPN1 OMA:VDLTCTS NextBio:304447 Bgee:Q9EPN1
CleanEx:MM_NBEA Genevestigator:Q9EPN1 GermOnline:ENSMUSG00000027799
Uniprot:Q9EPN1
Length = 2936
Score = 458 (166.3 bits), Expect = 5.7e-54, Sum P(2) = 5.7e-54
Identities = 84/147 (57%), Positives = 107/147 (72%)
Query: 56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
+++ LL HAMKDHIVRVANEAEFILNR RA+DV KHAEFES CAQ +RR+EE++C
Sbjct: 1952 ELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAADRREEEKMC 2011
Query: 116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
DHLISAA+ RD TA ++ K+ NIL+NKHGAW ++ +FW+LD WEDD RRR+RF
Sbjct: 2012 DHLISAAKHRDHVTANQLKQKILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRF 2071
Query: 176 VRNPRGTSHPNATLEKVAQKEVPEDAI 202
VRN G++H A L+ + ED +
Sbjct: 2072 VRNAFGSTHAEALLKSAVEYGTEEDVV 2098
Score = 282 (104.3 bits), Expect = 2.2e-35, Sum P(2) = 2.2e-35
Identities = 56/65 (86%), Positives = 59/65 (90%)
Query: 1 MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
MLLCSQEWQ S+QK+AGLAFIELINEGRLL HAMKDHIVRVANEAEFILNR RA+DV KH
Sbjct: 1931 MLLCSQEWQNSIQKNAGLAFIELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKH 1990
Query: 61 AELLS 65
AE S
Sbjct: 1991 AEFES 1995
Score = 152 (58.6 bits), Expect = 5.7e-54, Sum P(2) = 5.7e-54
Identities = 37/90 (41%), Positives = 56/90 (62%)
Query: 234 DSELIEGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDID-LTGPVNISTRARLISP 292
+ ++++ + A SQ+ + T L D + + + +ID L GPV +ST A+LI+P
Sbjct: 2094 EEDVVKSKKAFRSQAIVNQNSETELMLEGDDDAVSLLQEKEIDNLAGPVVLSTPAQLIAP 2153
Query: 293 GVSAQGTLSITSTELYFEVDEDCPDFRNTD 322
V A+GTLSIT+TE+YFEVDED F+ D
Sbjct: 2154 VVVAKGTLSITTTEIYFEVDEDDAAFKKID 2183
Score = 135 (52.6 bits), Expect = 3.5e-52, Sum P(2) = 3.5e-52
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTD 386
GPV +ST A+LI+P V A+GTLSIT+TE+YFEVDED F+ D
Sbjct: 2140 GPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDAAFKKID 2183
>UNIPROTKB|Q8NFP9 [details] [associations]
symbol:NBEA "Neurobeachin" species:9606 "Homo sapiens"
[GO:0008104 "protein localization" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISS] [GO:0012505 "endomembrane system" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=ISS] [GO:0005802
"trans-Golgi network" evidence=ISS] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 InterPro:IPR016024
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005829 GO:GO:0005886 GO:GO:0008104 SUPFAM:SSF48371
Gene3D:2.130.10.10 SUPFAM:SSF50978 PROSITE:PS00678 GO:GO:0012505
Gene3D:2.60.120.200 InterPro:IPR008985 InterPro:IPR013320
SUPFAM:SSF49899 GO:GO:0005802 Gene3D:1.10.1540.10 Gene3D:2.30.29.40
InterPro:IPR000409 InterPro:IPR023362 Pfam:PF02138 SMART:SM01026
SUPFAM:SSF81837 PROSITE:PS50197 HOGENOM:HOG000082375
HOVERGEN:HBG012582 InterPro:IPR010508 Pfam:PF06469 EMBL:AL390071
EMBL:AF467288 EMBL:AL138690 EMBL:AL139083 EMBL:AL159160
EMBL:AL161718 EMBL:AL161902 EMBL:AL356430 EMBL:AL357083
EMBL:AK001059 EMBL:AB046764 EMBL:AL137748 EMBL:AF072371
IPI:IPI00328195 IPI:IPI01012624 PIR:T46310 RefSeq:NP_001191126.1
RefSeq:NP_056493.3 UniGene:Hs.491172 PDB:1MI1 PDBsum:1MI1
ProteinModelPortal:Q8NFP9 SMR:Q8NFP9 IntAct:Q8NFP9
MINT:MINT-1380608 STRING:Q8NFP9 PhosphoSite:Q8NFP9 DMDM:296439289
PRIDE:Q8NFP9 Ensembl:ENST00000379922 Ensembl:ENST00000400445
GeneID:26960 KEGG:hsa:26960 UCSC:uc001uvd.3 UCSC:uc021ric.1
CTD:26960 GeneCards:GC13P035516 H-InvDB:HIX0029795 HGNC:HGNC:7648
HPA:HPA039730 HPA:HPA040385 MIM:604889 neXtProt:NX_Q8NFP9
PharmGKB:PA31454 InParanoid:Q8NFP9 ChiTaRS:NBEA
EvolutionaryTrace:Q8NFP9 GenomeRNAi:26960 NextBio:49420
ArrayExpress:Q8NFP9 Bgee:Q8NFP9 CleanEx:HS_NBEA
Genevestigator:Q8NFP9 GermOnline:ENSG00000172915 Uniprot:Q8NFP9
Length = 2946
Score = 456 (165.6 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
Identities = 84/147 (57%), Positives = 107/147 (72%)
Query: 56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
+++ LL HAMKDHIVRVANEAEFILNR RA+DV KHAEFES CAQ +RR+EE++C
Sbjct: 1962 ELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKHAEFESQCAQYAADRREEEKMC 2021
Query: 116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
DHLISAA+ RD TA ++ K+ NIL+NKHGAW ++ +FW+LD WEDD RRR+RF
Sbjct: 2022 DHLISAAKHRDHVTANQLKQKILNILTNKHGAWGAVSHSQLHDFWRLDYWEDDLRRRRRF 2081
Query: 176 VRNPRGTSHPNATLEKVAQKEVPEDAI 202
VRN G++H A L+ + ED +
Sbjct: 2082 VRNAFGSTHAEALLKAAIEYGTEEDVV 2108
Score = 282 (104.3 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
Identities = 56/65 (86%), Positives = 59/65 (90%)
Query: 1 MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
MLLCSQEWQ S+QK+AGLAFIELINEGRLL HAMKDHIVRVANEAEFILNR RA+DV KH
Sbjct: 1941 MLLCSQEWQNSIQKNAGLAFIELINEGRLLCHAMKDHIVRVANEAEFILNRQRAEDVHKH 2000
Query: 61 AELLS 65
AE S
Sbjct: 2001 AEFES 2005
Score = 151 (58.2 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
Identities = 37/90 (41%), Positives = 55/90 (61%)
Query: 234 DSELIEGEVAVVSQSSQANGANTCSELMDDSELIEGGGDIDID-LTGPVNISTRARLISP 292
+ ++++ + SQ+ A T L D + + + +ID L GPV +ST A+LI+P
Sbjct: 2104 EEDVVKSKKTFRSQAIVNQNAETELMLEGDDDAVSLLQEKEIDNLAGPVVLSTPAQLIAP 2163
Query: 293 GVSAQGTLSITSTELYFEVDEDCPDFRNTD 322
V A+GTLSIT+TE+YFEVDED F+ D
Sbjct: 2164 VVVAKGTLSITTTEIYFEVDEDDSAFKKID 2193
Score = 135 (52.6 bits), Expect = 5.8e-52, Sum P(2) = 5.8e-52
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTD 386
GPV +ST A+LI+P V A+GTLSIT+TE+YFEVDED F+ D
Sbjct: 2150 GPVVLSTPAQLIAPVVVAKGTLSITTTEIYFEVDEDDSAFKKID 2193
>RGD|1311428 [details] [associations]
symbol:Lrba "LPS-responsive vesicle trafficking, beach and
anchor containing" species:10116 "Rattus norvegicus" [GO:0005764
"lysosome" evidence=ISO] [GO:0005783 "endoplasmic reticulum"
evidence=ISO] [GO:0005802 "trans-Golgi network" evidence=ISO]
[GO:0005886 "plasma membrane" evidence=ISO] [GO:0016023
"cytoplasmic membrane-bounded vesicle" evidence=ISO]
InterPro:IPR017986 InterPro:IPR001680 InterPro:IPR015943
InterPro:IPR016024 Pfam:PF00400 SMART:SM00320 RGD:1311428
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0016023
Gene3D:2.60.120.200 InterPro:IPR008985 InterPro:IPR013320
SUPFAM:SSF49899 Gene3D:1.10.1540.10 Gene3D:2.30.29.40
InterPro:IPR000409 InterPro:IPR023362 Pfam:PF02138 SMART:SM01026
SUPFAM:SSF81837 PROSITE:PS50197 InterPro:IPR010508 Pfam:PF06469
IPI:IPI00952093 Ensembl:ENSRNOT00000023418 ArrayExpress:F1M3T7
Uniprot:F1M3T7
Length = 2709
Score = 446 (162.1 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 83/147 (56%), Positives = 111/147 (75%)
Query: 56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
+++ LLS MKDH+VRVANEAEFIL+R RA+D+ +HAEFES CAQ ++R+EE++C
Sbjct: 1733 ELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRHAEFESLCAQYSADKREEEKMC 1792
Query: 116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
DHLI AA+ RD TA +++ KV N+L +KHGAW +R +EFW+LD WEDD RRR+RF
Sbjct: 1793 DHLIRAAKYRDHVTATQLIQKVINLLRDKHGAWGSCAVSRPREFWRLDYWEDDLRRRRRF 1852
Query: 176 VRNPRGTSHPNATLEKVAQKEVPEDAI 202
VRNP G++HP ATL K A + V ++ I
Sbjct: 1853 VRNPLGSTHPEATL-KTAVEHVCDEII 1878
Score = 263 (97.6 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
Identities = 50/65 (76%), Positives = 58/65 (89%)
Query: 1 MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
MLLCSQEWQ S+QK+AGLAFIEL+NEGRLLS MKDH+VRVANEAEFIL+R RA+D+ +H
Sbjct: 1712 MLLCSQEWQNSIQKNAGLAFIELVNEGRLLSQTMKDHLVRVANEAEFILSRQRAEDIHRH 1771
Query: 61 AELLS 65
AE S
Sbjct: 1772 AEFES 1776
Score = 155 (59.6 bits), Expect = 4.2e-53, Sum P(2) = 4.2e-53
Identities = 29/55 (52%), Positives = 43/55 (78%)
Query: 270 GGDIDIDLTGPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 324
G D+ + GPV++ST A+L++P V +GTLS+TS+ELYFEVDE+ P+F+ DP+
Sbjct: 1914 GSDL-YNKAGPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPK 1967
Score = 152 (58.6 bits), Expect = 8.7e-53, Sum P(2) = 8.7e-53
Identities = 27/46 (58%), Positives = 39/46 (84%)
Query: 343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDPE 388
GPV++ST A+L++P V +GTLS+TS+ELYFEVDE+ P+F+ DP+
Sbjct: 1922 GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPK 1967
Score = 39 (18.8 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 141 LSNKHGAWAYNEAARTQEFWKLDSWEDD 168
LS GA AA E + +SWEDD
Sbjct: 2115 LSKPIGALNPKRAAFFAE--RFESWEDD 2140
>WB|WBGene00004760 [details] [associations]
symbol:sel-2 species:6239 "Caenorhabditis elegans"
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0040028 "regulation of vulval development"
evidence=IGI] [GO:0045746 "negative regulation of Notch signaling
pathway" evidence=IGI] [GO:0045176 "apical protein localization"
evidence=IMP] [GO:0045807 "positive regulation of endocytosis"
evidence=IMP] [GO:0016197 "endosomal transport" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IDA] InterPro:IPR017986
InterPro:IPR001680 InterPro:IPR015943 InterPro:IPR016024
Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00320
GO:GO:0005634 GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0016020 Gene3D:2.130.10.10 SUPFAM:SSF50978
PROSITE:PS00678 GO:GO:0016197 Gene3D:2.60.120.200
InterPro:IPR008985 InterPro:IPR013320 SUPFAM:SSF49899 GO:GO:0045807
GO:GO:0040027 GO:GO:0045746 eggNOG:NOG236271 Gene3D:1.10.1540.10
Gene3D:2.30.29.40 InterPro:IPR000409 InterPro:IPR023362
Pfam:PF02138 SMART:SM01026 SUPFAM:SSF81837 PROSITE:PS50197
GO:GO:0045176 HOGENOM:HOG000082375 InterPro:IPR010508 Pfam:PF06469
EMBL:Z46242 EMBL:Z35598 PIR:T20719 RefSeq:NP_497939.2
ProteinModelPortal:Q19317 SMR:Q19317 PaxDb:Q19317
EnsemblMetazoa:F10F2.1 GeneID:175606 KEGG:cel:CELE_F10F2.1
CTD:175606 WormBase:F10F2.1 GeneTree:ENSGT00670000097722
InParanoid:Q19317 OMA:EEAKMEP NextBio:888880 Uniprot:Q19317
Length = 2507
Score = 343 (125.8 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 83/215 (38%), Positives = 127/215 (59%)
Query: 56 DVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQERRDEERLC 115
+++ L++HA +DH++RVANEA+FILNR+RA+DV KHA+FE+ + L R +E C
Sbjct: 1509 ELVNEGRLMAHATRDHVLRVANEADFILNRLRAEDVSKHAQFEAESREQLAARHEEYGRC 1568
Query: 116 DHLISAARRRDQGTAGRILDKVSNILSNKHGAWAYNEAARTQEFWKLDSWEDDARRRKRF 175
D LI++ R RD A R+L+K+S ILS++ + + TQ FWKLD WEDD+RRRKRF
Sbjct: 1569 DLLIASGRLRDSINATRLLEKMSAILSDQD-----DSKSGTQ-FWKLDVWEDDSRRRKRF 1622
Query: 176 VRNPRGTSHPNATLEKVAQKEVPEDAIAHANQEFHXXXXXXXXXXXXNGANTCSELMDDS 235
V N G+ H A L + + E PE + QE N + + EL+D+S
Sbjct: 1623 VPNAYGSRHEEANLPEGEKNEEPEIS----EQEKIRKVLKGLFSKRQNSSGS-HELVDES 1677
Query: 236 ELIEGEVAV-VSQSSQANGANTCSELMDDSELIEG 269
++ + V + SSQ+ +T ++L+ ++ G
Sbjct: 1678 DIDKWAQEVDPTPSSQSACFSTTAKLIAPGVVVPG 1712
Score = 278 (102.9 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31
Identities = 50/62 (80%), Positives = 60/62 (96%)
Query: 1 MLLCSQEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKH 60
MLLCSQEWQTSLQKHAGLAFIEL+NEGRL++HA +DH++RVANEA+FILNR+RA+DV KH
Sbjct: 1488 MLLCSQEWQTSLQKHAGLAFIELVNEGRLMAHATRDHVLRVANEADFILNRLRAEDVSKH 1547
Query: 61 AE 62
A+
Sbjct: 1548 AQ 1549
Score = 113 (44.8 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 249 SQANGANTCSELMDDSELIEGGGDID-IDLTGPVNISTRARLISPGVSAQGTLSITSTEL 307
S+ ++ EL+D+S++ + ++D + ST A+LI+PGV GTLS+T+ +L
Sbjct: 1662 SKRQNSSGSHELVDESDIDKWAQEVDPTPSSQSACFSTTAKLIAPGVVVPGTLSVTANDL 1721
Query: 308 YFEVDEDCPDFR 319
+F+ +E P+++
Sbjct: 1722 FFDANESDPNYK 1733
Score = 98 (39.6 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 17/36 (47%), Positives = 28/36 (77%)
Query: 348 STRARLISPGVSAQGTLSITSTELYFEVDEDCPDFR 383
ST A+LI+PGV GTLS+T+ +L+F+ +E P+++
Sbjct: 1698 STTAKLIAPGVVVPGTLSVTANDLFFDANESDPNYK 1733
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.131 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 388 376 0.00088 117 3 11 22 0.42 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 607 (65 KB)
Total size of DFA: 237 KB (2126 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 31.03u 0.07s 31.10t Elapsed: 00:00:19
Total cpu time: 31.03u 0.07s 31.10t Elapsed: 00:00:20
Start: Thu Aug 15 11:32:57 2013 End: Thu Aug 15 11:33:17 2013