RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17733
(388 letters)
>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and
beige-like anchor protein LRBA {Human (Homo sapiens)
[TaxId: 9606]}
Length = 110
Score = 52.6 bits (126), Expect = 2e-09
Identities = 27/45 (60%), Positives = 38/45 (84%)
Query: 279 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDP 323
GPV++ST A+L++P V +GTLS+TS+ELYFEVDE+ P+F+ DP
Sbjct: 1 GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDP 45
Score = 52.6 bits (126), Expect = 2e-09
Identities = 27/45 (60%), Positives = 38/45 (84%)
Query: 343 GPVNISTRARLISPGVSAQGTLSITSTELYFEVDEDCPDFRNTDP 387
GPV++ST A+L++P V +GTLS+TS+ELYFEVDE+ P+F+ DP
Sbjct: 1 GPVSLSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDP 45
>d1n1fa_ a.26.1.3 (A:) Interleukin-19 {Human (Homo sapiens) [TaxId:
9606]}
Length = 156
Score = 27.9 bits (62), Expect = 1.2
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 2/85 (2%)
Query: 28 RLLSHAMKDHIVRVANEAEFILNRMRA--DDVLKHAELLSHAMKDHIVRVANEAEFILNR 85
+LS I++ + N + D V K + + + I +AN ++
Sbjct: 37 TILSTLETLQIIKPLDVCCVTKNLLAFYVDRVFKDHQEPNPKILRKISSIANSFLYMQKT 96
Query: 86 MRADDVLKHAEFESHCAQTLQERRD 110
+R + + D
Sbjct: 97 LRQCQEQRQCHCRQEATNATRVIHD 121
>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 179
Score = 27.3 bits (60), Expect = 2.6
Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 11/129 (8%)
Query: 13 QKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADD----VLKHAELLSHAM 68
AG+A + + A+ EF+L L HA +L H
Sbjct: 56 SISAGMAIYDTMVLAPCDIATYAMG--MAASMGEFLL--AAGTKGKRYALPHARILMHQP 111
Query: 69 KDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQE-RRDEERLCDHLISAARRRDQ 127
+ A + + Q ++ D +R D +AA +
Sbjct: 112 LGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDR--DRWFTAAEALEY 169
Query: 128 GTAGRILDK 136
G I+ +
Sbjct: 170 GFVDHIITR 178
>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus
(Bacillus anthracis) [TaxId: 1392]}
Length = 722
Score = 27.6 bits (61), Expect = 2.9
Identities = 31/206 (15%), Positives = 58/206 (28%), Gaps = 35/206 (16%)
Query: 193 AQKEVPEDAIAHANQEFHAQVAVVSQSSQANGANTCSELMDDSELIEGEVAVVSQSSQAN 252
++ + D + E S +S+ + + + + + + S +
Sbjct: 129 KKEVISSDNLQ--LPEL----KQKSSNSRKKRSTS-----AGPTVPDRDNDGIPDSLEVE 177
Query: 253 G-----ANTCSELMDDSELIEGGGDIDIDLTGPVNISTRARLIS---------------- 291
G N + L I + + P ST + S
Sbjct: 178 GYTVDVKNKRTFLSPWISNIHEKKGLTKYKSSPEKWSTASDPYSDFEKVTGRIDKNVSPE 237
Query: 292 ---PGVSAQGTLSITSTELYFEVDEDCPDFRNTDPERSVISGVVVSRTPDLEFGGPVNIS 348
P V+A + + + +ED R++ SRT E G +
Sbjct: 238 ARHPLVAAYPIVHVDMENIILSKNEDQSTQNTDSETRTISKNTSTSRTHTSEVHGNAEVH 297
Query: 349 TRARLISPGVSAQGTLSITSTELYFE 374
I VSA + S +ST
Sbjct: 298 ASFFDIGGSVSAGFSNSNSSTVAIDH 323
>d2ilka_ a.26.1.3 (A:) Interleukin-10 (cytokine synthesis inhibitory
factor, CSIF) {Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 26.6 bits (59), Expect = 3.7
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 55 DDVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFESHCAQTLQER 108
++V+ AE +K H+ + L +R H E+
Sbjct: 69 EEVMPQAENQDPDIKAHVNSLGE----NLKTLRLRLRRCHRFLPCENKSKAVEQ 118
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured
thermotogales bacterium [TaxId: 221214]}
Length = 217
Score = 27.0 bits (59), Expect = 3.9
Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 10/105 (9%)
Query: 31 SHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAM---------KDHIVRVANEAEF 81
+H + H RV A I +R + D L H + DH A A
Sbjct: 31 AHDI-SHTFRVMENASEIASREKCDLQKAIIAALLHDIKRPHEALTGVDHAESGAEYASG 89
Query: 82 ILNRMRADDVLKHAEFESHCAQTLQERRDEERLCDHLISAARRRD 126
+L M D ++ + L ++ A R D
Sbjct: 90 LLPTMGFDISFVAEVSKAIRSHRYSGGLTPTSLTGKILQDADRLD 134
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688
{Staphylococcus epidermidis [TaxId: 1282]}
Length = 216
Score = 26.6 bits (58), Expect = 4.6
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 19 AFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLK-HAELLSHAMKDHIVRV-- 75
+++ ++ H + H+ RV N A +I R D L L H D +
Sbjct: 12 EYMKSFHQHDTTGHDI-AHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDSKLTDEI 70
Query: 76 --ANEAEFILNRMRADD 90
++ + L+ +
Sbjct: 71 LAYDQLKQFLSTLDLSS 87
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus
subtilis [TaxId: 1423]}
Length = 157
Score = 26.2 bits (57), Expect = 5.4
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 6 QEWQTSLQKHAGLAFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLK 59
+E+ L +A + IEL +E + + +D + E + IL+++ D +
Sbjct: 21 EEYTKRLSAYAKIDIIELPDEKAPENLSDQDMKIIKDKEGDRILSKISPDAHVI 74
>d3dbya1 a.29.13.1 (A:5-125) Uncharacterized protein BCE_G9241_0798
{Bacillus cereus [TaxId: 1396]}
Length = 121
Score = 25.5 bits (56), Expect = 5.8
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 21 IELINEGRLLSH---AMKDHIVRVANEAEFILNRM 52
I+ EG++ H +H+V E +L +
Sbjct: 80 IQKQLEGKITIHFTPTFINHMVNEVEEYIAVLEFL 114
>d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981
{Bacillus thuringiensis [TaxId: 1428]}
Length = 213
Score = 26.1 bits (57), Expect = 6.1
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 19 AFIELINEGRLLSHAMKDHIVRVANEAEFILNRMRADDVLKHAELLSHAMKD-----HIV 73
F++ I E H HI RV A + + + + L H + D
Sbjct: 11 TFVKHILEKDASGHDW-YHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADEKLNESEE 69
Query: 74 RVANEAEFILNRMRADD 90
+ L + ++
Sbjct: 70 AGMKKVSDWLEELHVEE 86
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 25.6 bits (56), Expect = 6.1
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 281 VNISTRARLISPGV-SAQGTLSITSTELYFEVDEDCPDFRNTDPERSVIS 329
+++ I P + +GTL++T+ LYF+ E P F +
Sbjct: 12 KDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINR 61
>d1y9wa1 d.108.1.1 (A:1-140) Probable acetyltransferase BC2806
{Bacillus cereus [TaxId: 1396]}
Length = 140
Score = 25.6 bits (55), Expect = 7.6
Identities = 12/86 (13%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 41 VANEAEFILNRMRADDVLKHAELLSHAMKDHIVRVANEAEFILNRMRADDVLKHAEFES- 99
E E+I N++ ++ + + M++ + V NE I + H +
Sbjct: 10 TRIEGEYIKNKVIQYNMSILTDEVKQPMEEVSLVVKNEEGKIFGGVTGTMYFYHLHIDFL 69
Query: 100 HCAQTLQERRDEERLCDHLISAARRR 125
++++ +L + A+ +
Sbjct: 70 WVDESVRHDGYGSQLLHEIEGIAKEK 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.372
Gapped
Lambda K H
0.267 0.0521 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,404,313
Number of extensions: 62174
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 23
Length of query: 388
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 301
Effective length of database: 1,213,086
Effective search space: 365138886
Effective search space used: 365138886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.1 bits)