BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17734
(626 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GQB|A Chain A, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 637
Score = 538 bits (1387), Expect = e-153, Method: Compositional matrix adjust.
Identities = 281/626 (44%), Positives = 398/626 (63%), Gaps = 15/626 (2%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLS 67
VS G + I + ++A + FD+ +P+ HPRF R + + P+ + L
Sbjct: 14 VSSGRDLNCVPEIADTLGAVAKQGFDFLCMPVFHPRFKREFIQEPAKNRPGPQTRSDLLL 73
Query: 68 SICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDF 127
S W LIV + ++ +SK + R +++ + QEL + YLG+P ++ L+Q D
Sbjct: 74 S-GRDWNTLIVGKLSPWIRP-DSKVEKIRRNSEAAMLQELNFGAYLGLPAFLLPLNQEDN 131
Query: 128 CNFARTLYAH-SEKNMSYTAWIKVPIRP--------VDTSMLRQQEEEPSSQDTWRWWNM 178
N AR L H + S W++VP+ ++ + EE + TW WW+
Sbjct: 132 TNLARVLTNHIHTGHHSSMFWMRVPLVAPEDLRDDIIENAPTTHTEEYSGEEKTWMWWHN 191
Query: 179 FRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLA 238
FR++ +Y + +ALEI D+ +H + RWLGEP++ +PT +F TNK G+PVL+
Sbjct: 192 FRTLCDYSKRIAVALEIGADLPSNHVIDRWLGEPIKAAILPTSIFLTNKKGFPVLSKMHQ 251
Query: 239 NFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP 296
I ++L+ +Q +I G N H + + Y+QY++YL ++ + + A+ +EDYLQ P
Sbjct: 252 RLIFRLLKLEVQFIITGTNHHSEKEFCSYLQYLEYLSQNRPPPNAYELFAKGYEDYLQSP 311
Query: 297 LQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPL 356
LQPL ++L S TYEVFEKDPIKY +YQ+A+ + LLDRV E+ DT V +MV+GAGRGPL
Sbjct: 312 LQPLMDNLESQTYEVFEKDPIKYSQYQQAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPL 371
Query: 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD 416
V ASL AAK+A+R++++YAVEKN +AVV L+ + E+W S VT+VS DMR W APEKAD
Sbjct: 372 VNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEWG-SQVTVVSSDMREWVAPEKAD 430
Query: 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476
I+VSELLGSF DNELSPECL AQ +LK+DG+SIP YTS++API S KL+ +V++ K
Sbjct: 431 IIVSELLGSFADNELSPECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEVRACREK 490
Query: 477 EHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLH 536
+ + P +FE PYVV N + ++ PQPCFTF HP+ D DN+RY F E ++VLH
Sbjct: 491 D-RDPEAQFEMPYVVRLHNFHQLSAPQPCFTFSHPNRDPMIDNNRYCTLEFPVEVNTVLH 549
Query: 537 GIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNV 596
G AGYF+T LY+DI LSI P+T SPG+ SWFP+LFPI +PI ++ I V FWR ++
Sbjct: 550 GFAGYFETVLYQDITLSIRPETHSPGMFSWFPILFPIKQPITVREGQTICVRFWRCSNSK 609
Query: 597 KVWYEWLVTKPTPSPIYNLDGRSYKM 622
KVWYEW VT P S I+N GRSY +
Sbjct: 610 KVWYEWAVTAPVCSAIHNPTGRSYTI 635
>pdb|4G56|A Chain A, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|C Chain C, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 657
Score = 522 bits (1345), Expect = e-148, Method: Compositional matrix adjust.
Identities = 282/630 (44%), Positives = 390/630 (61%), Gaps = 22/630 (3%)
Query: 8 VSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFAR--HKDVDRYRVFGLPEAQVQS 65
VS G + + + + A + FD+ P+ HPRF R +K+ + R P Q +S
Sbjct: 33 VSSGRDVACVTEVADTLGAXANQGFDFLCXPIFHPRFKREFYKEPAKSR----PGPQTRS 88
Query: 66 -LSSICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQ 124
L W LIV + +K +S+ R ++ QEL + YLG+P ++ L Q
Sbjct: 89 DLLLSGRDWNTLIVGKLSDWIKT-DSEVSRIRKTSEAAXQQELNFSAYLGLPAFLIPLKQ 147
Query: 125 PDFCNFARTLYAHSEKNMSYTA-WIKVPIRP--------VDTSMLRQQEEEPSSQD-TWR 174
D N +R L H T W +VP+ ++ + EE+ S ++ TW
Sbjct: 148 EDNSNLSRLLINHIHVGHHSTXFWXRVPLXAPNDLRDDLIENEPISLSEEDNSGEERTWI 207
Query: 175 WWNMFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLN 234
WW+ FRS+ +Y+ K LA+EI D+ H + RWLGEP++ F+PT +F TNK G+PVL
Sbjct: 208 WWHNFRSLCDYNKKIALAIEIGADLPSGHVIDRWLGEPIKAAFLPTSIFLTNKKGFPVLT 267
Query: 235 ASLANFIKKILEKNLQVVIQGVNRH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDY 292
I K+ + +Q VI G + H + Y+QY++YL ++S + A+ +EDY
Sbjct: 268 KVHQRLIFKLFKLEVQFVISGSHHHSEKDLCSYLQYLEYLSQNSPPPNAYEXFAKGYEDY 327
Query: 293 LQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAG 352
LQ PLQPL ++L S TYEVFEKDP+KY +YQ+AV + LLDRV E+ +T + + V+GAG
Sbjct: 328 LQSPLQPLXDNLESQTYEVFEKDPVKYSQYQQAVYKCLLDRVPEEEKETNIQILXVLGAG 387
Query: 353 RGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP 412
RGPLV ASL AAK+A RK++VYAVEKN +AV+ L+ + E+W S VT+VS D R W AP
Sbjct: 388 RGPLVNASLRAAKQAERKIKVYAVEKNPNAVITLEGWRYEEWG-SQVTVVSGDXREWKAP 446
Query: 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKS 472
EKADI+VSELLGSFGDNELSPECL AQ +LK+DG+SIP YTSY+API S KL+ +V++
Sbjct: 447 EKADIIVSELLGSFGDNELSPECLDGAQHFLKDDGVSIPGEYTSYLAPISSSKLYNEVRA 506
Query: 473 SMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQD 532
K+ + P +FE PYVV N + ++ P PCFTF HP++D DN+RY + + +
Sbjct: 507 CREKD-RDPEAQFEXPYVVRLHNFHQLSDPLPCFTFHHPNKDDVIDNNRYCCLQYRVDLN 565
Query: 533 SVLHGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRL 592
+VLHG AGYF+T LYKD+ LSI P++ SPG SWFP+LFPI +PI + D + V FWR
Sbjct: 566 TVLHGFAGYFNTVLYKDVTLSICPESHSPGXFSWFPILFPIKQPIPXREGDTVCVRFWRC 625
Query: 593 CDNVKVWYEWLVTKPTPSPIYNLDGRSYKM 622
+ KVWYEW VT P S I+N GRSY +
Sbjct: 626 NNGKKVWYEWAVTSPVCSAIHNPTGRSYTI 655
>pdb|3UA4|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
pdb|3UA4|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
Length = 745
Score = 267 bits (682), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 198/601 (32%), Positives = 293/601 (48%), Gaps = 89/601 (14%)
Query: 99 AKDLLHQELEYITYLGIPFIVVSLDQPDFCNFARTLYAHS-EKNMSYTAWIKVPIRPVDT 157
+++ L +EL YI YLG+ + + L + A L +N +T W+++P +
Sbjct: 147 SEEHLLKELSYICYLGLQTMAIELTRISSPRTAAILKKWIWTRNSRFTVWVQLP-----S 201
Query: 158 SMLRQQEEEPSS---QDTWRWWNMFRSVTNYHSK--FELALEINGDICDDHELT------ 206
++ + ++ + + D W W FR S F++AL I+ ++ D ELT
Sbjct: 202 AIEKCKDYDAFTIEHVDLWTIWADFRKNCGNFSGVYFQVALTISSELPD--ELTELKLVD 259
Query: 207 RWLGEPLRCVFIPTHVFQTNKAGYPVLNASLANFIKKILEKN-LQVVIQGVNR------- 258
RW EPL I + +F + + G + ++ N +K + + L++V++
Sbjct: 260 RWKAEPLAAFVIESGLFISGRNGEASIPSAHINLLKHLWTTDALRIVLRATTDTFKYNTS 319
Query: 259 -----HQSYLHYVQYMQYLKK----SSHSDDPLSMAAQDFEDYLQFPLQPLANDLSSFTY 309
Q+ H V+ + Y + +D + +++D LQ PLQPL+ +L S Y
Sbjct: 320 IKSEYSQALRHAVRNVNYRSRPDVGEGSNDSTHYLNVIEYKDVLQAPLQPLSENLDSGVY 379
Query: 310 EVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANR 369
FE+D IKY Y EAV AL D + + TVV I ++G GRGP+ T L + +E N
Sbjct: 380 NTFEQDQIKYDVYGEAVVGALKD-LGADGRKTVV--IYLLGGGRGPIGTKILKSEREYNN 436
Query: 370 ---------KVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW------NAPEK 414
KV++Y VEKN +A+V LKY W + VTI+ DMR+ E+
Sbjct: 437 TFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRR-VTIIESDMRSLPGIAKDRGFEQ 495
Query: 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVK--- 471
DI+VSELLGSFGDNELSPECL +LK ISIP YTSY+ PIMS + +K
Sbjct: 496 PDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIHQTIKAQS 555
Query: 472 ----SSMIKEHQ-------------------HPLYRFEQPYVVYQRNKYNIA-PPQPCFT 507
S I H H +Q YVVY +A +P FT
Sbjct: 556 IPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQIYVVYLSKYIPLAETTKPVFT 615
Query: 508 FVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTFLYKDINLSIHPDTLSPGLISWF 567
F HP+ + N R F+ ++++ L G AGYFD LYK + LSI P T +PG++SWF
Sbjct: 616 FEHPNF-MNSSNERSDSIEFVMDRNADLMGFAGYFDLQLYKTVMLSIEPSTHTPGMVSWF 674
Query: 568 PVLFPIHEPIQLKTNDEIEVHFWRLCDNVKVWYEWLVTK------PTPSPIYNLDGRSYK 621
P + P+ + +++ D I + R DN VWYEW V K +PI N +G SY
Sbjct: 675 PAVIPLRDQLRVGEGDRISLKIDRKVDNTGVWYEWHVEKKKTNGESVSTPIQNPNGESYY 734
Query: 622 M 622
M
Sbjct: 735 M 735
>pdb|3UA3|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
pdb|3UA3|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
Length = 745
Score = 258 bits (660), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 195/599 (32%), Positives = 288/599 (48%), Gaps = 89/599 (14%)
Query: 99 AKDLLHQELEYITYLGIPFIVVSLDQPDFCNFARTLYAHS-EKNMSYTAWIKVPIRPVDT 157
+++ L +EL YI YLG+ + L + A L +N +T W+++P +
Sbjct: 147 SEEHLLKELSYICYLGLQTXAIELTRISSPRTAAILKKWIWTRNSRFTVWVQLP-----S 201
Query: 158 SMLRQQEEEPSS---QDTWRWWNMFRSVTNYHSK--FELALEINGDICDDHELT------ 206
++ + ++ + + D W W FR S F++AL I+ ++ D ELT
Sbjct: 202 AIEKCKDYDAFTIEHVDLWTIWADFRKNCGNFSGVYFQVALTISSELPD--ELTELKLVD 259
Query: 207 RWLGEPLRCVFIPTHVFQTNKAGYPVLNASLANFIKKILEKN-LQVVIQGVNR------- 258
RW EPL I + +F + + G + ++ N +K + + L++V++
Sbjct: 260 RWKAEPLAAFVIESGLFISGRNGEASIPSAHINLLKHLWTTDALRIVLRATTDTFKYNTS 319
Query: 259 -----HQSYLHYVQYMQYLKK----SSHSDDPLSMAAQDFEDYLQFPLQPLANDLSSFTY 309
Q+ H V+ + Y + +D + +++D LQ PLQPL+ +L S Y
Sbjct: 320 IKSEYSQALRHAVRNVNYRSRPDVGEGSNDSTHYLNVIEYKDVLQAPLQPLSENLDSGVY 379
Query: 310 EVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANR 369
FE+D IKY Y EAV AL D + + TVV I ++G GRGP+ T L + +E N
Sbjct: 380 NTFEQDQIKYDVYGEAVVGALKD-LGADGRKTVV--IYLLGGGRGPIGTKILKSEREYNN 436
Query: 370 ---------KVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW------NAPEK 414
KV++Y VEKN +A+V LKY W + VTI+ D R+ E+
Sbjct: 437 TFRQGQESLKVKLYIVEKNPNAIVTLKYXNVRTWKRR-VTIIESDXRSLPGIAKDRGFEQ 495
Query: 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVK--- 471
DI+VSELLGSFGDNELSPECL +LK ISIP YTSY+ PI S + +K
Sbjct: 496 PDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIPQKYTSYVKPIXSTHIHQTIKAQS 555
Query: 472 ----SSMIKEHQ-------------------HPLYRFEQPYVVYQRNKYNIA-PPQPCFT 507
S I H H +Q YVVY +A +P FT
Sbjct: 556 IPYLSRAIPSHGRGEPELDEDEXWIQKYPQGHVRNNXDQIYVVYLSKYIPLAETTKPVFT 615
Query: 508 FVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTFLYKDINLSIHPDTLSPGLISWF 567
F HP+ + N R F+ ++++ L G AGYFD LYK + LSI P T +PG +SWF
Sbjct: 616 FEHPNF-XNSSNERSDSIEFVXDRNADLXGFAGYFDLQLYKTVXLSIEPSTHTPGXVSWF 674
Query: 568 PVLFPIHEPIQLKTNDEIEVHFWRLCDNVKVWYEWLVTK------PTPSPIYNLDGRSY 620
P + P+ + +++ D I + R DN VWYEW V K +PI N +G SY
Sbjct: 675 PAVIPLRDQLRVGEGDRISLKIDRKVDNTGVWYEWHVEKKKTNGESVSTPIQNPNGESY 733
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 24/161 (14%)
Query: 314 KDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRV 373
+D ++ YQ A+ Q D ++ VG G G L S AA+ RK+
Sbjct: 21 QDYVRTGTYQRAILQ--------NHTDFKDKIVLDVGCGSGIL---SFFAAQAGARKI-- 67
Query: 374 YAVEKNMSAVVGLKYKKEEQWAQSD-----VTIVSEDMRTWNAPEKADIMVSELLGSFGD 428
YAVE + A + E +S+ + ++ + + PE+ DI++SE +G
Sbjct: 68 YAVEASTMA------QHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLF 121
Query: 429 NELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQ 469
NE E A+KYLK G P ++AP +L+ +
Sbjct: 122 NERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYME 162
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 14/156 (8%)
Query: 314 KDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRV 373
+D ++ YQ A+ Q D ++ VG G G L S AA+ RK+
Sbjct: 138 QDYVRTGTYQRAILQ--------NHTDFKDKIVLDVGCGSGIL---SFFAAQAGARKI-- 184
Query: 374 YAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSP 433
YAVE + A K + ++ + + PE+ DI++SE +G NE
Sbjct: 185 YAVEASTMAQHAEVLVKSNNLTDR-IVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERML 243
Query: 434 ECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQ 469
E A+KYLK G P ++AP +L+ +
Sbjct: 244 ESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYME 279
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 24/161 (14%)
Query: 314 KDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRV 373
+D ++ YQ A+ Q D ++ VG G G L S AA+ RK+
Sbjct: 26 QDYVRTGTYQRAILQ--------NHTDFKDKIVLDVGCGSGIL---SFFAAQAGARKI-- 72
Query: 374 YAVEKNMSAVVGLKYKKEEQWAQSD-----VTIVSEDMRTWNAPEKADIMVSELLGSFGD 428
YAVE + A + E +S+ + ++ + + PE+ DI++SE +G
Sbjct: 73 YAVEASTMA------QHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLF 126
Query: 429 NELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQ 469
NE E A+KYLK G P ++AP +L+ +
Sbjct: 127 NERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYME 167
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 24/161 (14%)
Query: 314 KDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRV 373
+D ++ YQ A+ Q D ++ VG G G L S AA+ RK+
Sbjct: 25 QDYVRTGTYQRAILQ--------NHTDFKDKIVLDVGCGSGIL---SFFAAQAGARKI-- 71
Query: 374 YAVEKNMSAVVGLKYKKEEQWAQSD-----VTIVSEDMRTWNAPEKADIMVSELLGSFGD 428
YAVE + A + E +S+ + ++ + + PE+ DI++SE +G
Sbjct: 72 YAVEASTMA------QHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLF 125
Query: 429 NELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQ 469
NE E A+KYLK G P ++AP +L+ +
Sbjct: 126 NERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYME 166
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 24/161 (14%)
Query: 314 KDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRV 373
+D ++ YQ A+ Q D ++ VG G G L S AA+ RK+
Sbjct: 30 QDYVRTGTYQRAILQ--------NHTDFKDKIVLDVGCGSGIL---SFFAAQAGARKI-- 76
Query: 374 YAVEKNMSAVVGLKYKKEEQWAQSD-----VTIVSEDMRTWNAPEKADIMVSELLGSFGD 428
YAVE + A + E +S+ + ++ + + PE+ DI++SE +G
Sbjct: 77 YAVEASTMA------QHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLF 130
Query: 429 NELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQ 469
NE E A+KYLK G P ++AP +L+ +
Sbjct: 131 NERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYME 171
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
Query: 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN---MSAVVGLKYKKEEQWAQSDVTI 401
T++ VGAG G L S+ A+ R RVYAVE + A +++ E V +
Sbjct: 86 TVLDVGAGTGIL---SIFCAQAGAR--RVYAVEASAIWQQAREVVRFNGLE----DRVHV 136
Query: 402 VSEDMRTWNAPEKADIMVSELLG-SFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAP 460
+ + T PE+ D +VSE +G + L+A K+LKE G+ +P + +I P
Sbjct: 137 LPGPVETVELPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVP 196
Query: 461 IMSHKLFTQVKS-SMIKEH 478
I L ++ S +K+H
Sbjct: 197 ISDQMLEWRLGFWSQVKQH 215
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE 404
T++ VG G G L S A +VYAVE A K V ++
Sbjct: 66 TVLDVGTGSGILAIWSAQAGAR-----KVYAVEATKMADHARALVKANNLDHI-VEVIEG 119
Query: 405 DMRTWNAPEKADIMVSELLGSFGDNE-LSPECLYAAQKYLKEDGISIPYNYTSYIAPIMS 463
+ + PEK D+++SE +G F E + + A ++LK G+ P + ++API S
Sbjct: 120 SVEDISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKS 179
Query: 464 H 464
+
Sbjct: 180 N 180
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 140/338 (41%), Gaps = 69/338 (20%)
Query: 274 KSSHSDDPLSMAAQD--FEDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAV---QQ 328
+SS + M ++D F+ Y F + +E KD ++ + Y+ ++ +
Sbjct: 15 ESSEKPNAEDMTSKDYYFDSYAHFGI-----------HEELLKDEVRTLTYRNSMFHNRH 63
Query: 329 ALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKY 388
D+V ++ VG+G G L + AAK RKV +E + + +K
Sbjct: 64 LFKDKV-----------VLDVGSGTGILC---MFAAKAGARKV--IGIECSSISDYAVKI 107
Query: 389 KKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGS--FGDNELSPECLYAAQKYLKE 445
K + VTI+ + P EK DI++SE +G F ++ L+ L+A K+L
Sbjct: 108 VKANKLDHV-VTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNT-VLHARDKWLAP 165
Query: 446 DGISIPYNYTSYIAPIMSHKLFTQVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPC 505
DG+ P T Y+ T ++ K+++ ++ +E Y ++A +P
Sbjct: 166 DGLIFPDRATLYV---------TAIEDRQYKDYK--IHWWENVYGFDMSCIKDVAIKEPL 214
Query: 506 FTFVHPSE---------DKDPDNSRYTKATFIA------EQDSVLHGIAGYFD---TFLY 547
V P + + D + TF + +++ +H + YF+ T +
Sbjct: 215 VDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCH 274
Query: 548 KDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEI 585
K S P+ SP W +F + + + +KT +EI
Sbjct: 275 KRTGFSTSPE--SP-YTHWKQTVFYMEDYLTVKTGEEI 309
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 75/338 (22%), Positives = 140/338 (41%), Gaps = 69/338 (20%)
Query: 274 KSSHSDDPLSMAAQD--FEDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAV---QQ 328
+SS + M ++D F+ Y F + +E KD ++ + Y+ ++ +
Sbjct: 6 ESSEKPNAEDMTSKDYYFDSYAHFGI-----------HEEMLKDEVRTLTYRNSMFHNRH 54
Query: 329 ALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKY 388
D+V ++ VG+G G L + AAK RKV +E + + +K
Sbjct: 55 LFKDKV-----------VLDVGSGTGIL---CMFAAKAGARKV--IGIECSSISDYAVKI 98
Query: 389 KKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGS--FGDNELSPECLYAAQKYLKE 445
K + VTI+ + P EK DI++SE +G F ++ L+ L+A K+L
Sbjct: 99 VKANKLDHV-VTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNT-VLHARDKWLAP 156
Query: 446 DGISIPYNYTSYIAPIMSHKLFTQVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPC 505
DG+ P T Y+ T ++ K+++ ++ +E Y ++A +P
Sbjct: 157 DGLIFPDRATLYV---------TAIEDRQYKDYK--IHWWENVYGFDMSCIKDVAIKEPL 205
Query: 506 FTFVHPSE---------DKDPDNSRYTKATFIA------EQDSVLHGIAGYFD---TFLY 547
V P + + D + TF + +++ +H + YF+ T +
Sbjct: 206 VDVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCH 265
Query: 548 KDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEI 585
K S P+ SP W +F + + + +KT +EI
Sbjct: 266 KRTGFSTSPE--SP-YTHWKQTVFYMEDYLTVKTGEEI 300
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 112/261 (42%), Gaps = 42/261 (16%)
Query: 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED 405
++ VG+G G L + AAK RKV +E + + +K K + VTI+
Sbjct: 64 VLDVGSGTGIL---CMFAAKAGARKV--IGIECSSISDYAVKIVKANKLDHV-VTIIKGK 117
Query: 406 MRTWNAP-EKADIMVSELLGS--FGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIM 462
+ P EK DI++SE +G F ++ L+ L+A K+L DG+ P T Y+
Sbjct: 118 VEEVELPVEKVDIIISEWMGYCLFYESMLNT-VLHARDKWLAPDGLIFPDRATLYV---- 172
Query: 463 SHKLFTQVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSE--------- 513
T ++ K+++ ++ +E Y ++A +P V P +
Sbjct: 173 -----TAIEDRQYKDYK--IHWWENVYGFDMSCIKDVAIKEPLVDVVDPKQLVTNACLIK 225
Query: 514 DKDPDNSRYTKATFIA------EQDSVLHGIAGYFD---TFLYKDINLSIHPDTLSPGLI 564
+ D + TF + +++ +H + YF+ T +K S P+ SP
Sbjct: 226 EVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHKRTGFSTSPE--SP-YT 282
Query: 565 SWFPVLFPIHEPIQLKTNDEI 585
W +F + + + +KT +EI
Sbjct: 283 HWKQTVFYMEDYLTVKTGEEI 303
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 73/337 (21%), Positives = 136/337 (40%), Gaps = 67/337 (19%)
Query: 274 KSSHSDDPLSMAAQD--FEDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAV---QQ 328
+SS + M ++D F+ Y F + +E KD ++ + Y+ ++ +
Sbjct: 19 ESSEKPNAEDMTSKDYYFDSYAHFGI-----------HEEMLKDEVRTLTYRNSMFHNRH 67
Query: 329 ALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKY 388
D+V ++ VG+G G L + AAK RKV +E + + +K
Sbjct: 68 LFKDKV-----------VLDVGSGTGIL---CMFAAKAGARKV--IGIECSSISDYAVKI 111
Query: 389 KKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLG-SFGDNELSPECLYAAQKYLKED 446
K + VTI+ + P EK DI++SE +G + L+A K+L D
Sbjct: 112 VKANKLDHV-VTIIKGKVEEVELPVEKVDIIISEWMGYCLFYQSMLNTVLHARDKWLAPD 170
Query: 447 GISIPYNYTSYIAPIMSHKLFTQVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCF 506
G+ P T Y+ T ++ K+++ ++ +E Y ++A +P
Sbjct: 171 GLIFPDRATLYV---------TAIEDRQYKDYK--IHWWENVYGFDMSCIKDVAIKEPLV 219
Query: 507 TFVHPSE---------DKDPDNSRYTKATFIA------EQDSVLHGIAGYFD---TFLYK 548
V P + + D + TF + +++ +H + YF+ T +K
Sbjct: 220 DVVDPKQLVTNACLIKEVDIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYFNIEFTRCHK 279
Query: 549 DINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEI 585
S P+ SP W +F + + + +KT +EI
Sbjct: 280 RTGFSTSPE--SP-YTHWKQTVFYMEDYLTVKTGEEI 313
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 103/253 (40%), Gaps = 36/253 (14%)
Query: 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSD-VTIVSE 404
++ VG G G L S+ AAK + V + +MS+++ + + E SD +T++
Sbjct: 42 VLDVGCGTGIL---SMFAAKHGAKHV----IGVDMSSIIEMAKELVELNGFSDKITLLRG 94
Query: 405 DMRTWNAP-EKADIMVSELLGSFGDNE-LSPECLYAAQKYLKEDGISIPYNYTSYIAPIM 462
+ + P K DI++SE +G F E + LYA YL E G+ P + ++A +
Sbjct: 95 KLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLE 154
Query: 463 SHKLFTQVKSSMIKEHQHPLYRFE-QPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSR 521
+Q K + Q +Y F+ P+V P D N+
Sbjct: 155 D----SQYKDEKLNYWQ-DVYGFDYSPFV--------------PLVLHEPIVDTVERNNV 195
Query: 522 YTKATFIAEQDSVLHGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPI---HEPIQ 578
T + + E D I+ D + L+ + G+++WF ++FP P++
Sbjct: 196 NTTSDKLIEFDLNTVKIS---DLAFKSNFKLTAKRQDMINGIVTWFDIVFPAPKGKRPVE 252
Query: 579 LKTNDEIEVHFWR 591
T W+
Sbjct: 253 FSTGPHAPYTHWK 265
>pdb|3HAM|A Chain A, Structure Of The Gentamicin-Aph(2")-Iia Complex
pdb|3HAM|B Chain B, Structure Of The Gentamicin-Aph(2")-Iia Complex
pdb|3HAV|A Chain A, Structure Of The Streptomycin-Atp-Aph(2")-Iia Ternary
Complex
pdb|3HAV|B Chain B, Structure Of The Streptomycin-Atp-Aph(2")-Iia Ternary
Complex
pdb|3HAV|C Chain C, Structure Of The Streptomycin-Atp-Aph(2")-Iia Ternary
Complex
Length = 299
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 30/154 (19%)
Query: 476 KEHQHPLYRFEQ--------PYVVYQRNKYNIAP----PQPCFTFVHPSEDKDPDNSRYT 523
++ + LYRF + P VVYQ +++NI + + H +K+ D Y
Sbjct: 53 QKREFELYRFLENCKLSYQIPAVVYQSDRFNIMKYIKGERITYEQYHKLSEKEKDALAYD 112
Query: 524 KATFIAEQDSVLHGIAGYFDTFLYKDINLSIHPDTL---SPGLISWFPVLFPIHEPIQLK 580
+ATF+ E LH I D ++S+ D L + +L I E QL
Sbjct: 113 EATFLKE----LHSIE--------IDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLL 160
Query: 581 TNDEIEVHFWRLCDNVKVWYEWLVTKPTPSPIYN 614
T++ +E H + +N + ++ K TP ++N
Sbjct: 161 TDEMLE-HIETIYEN--ILNNAVLFKYTPCLVHN 191
>pdb|3UZR|A Chain A, Crystal Structure Of Aminoglycoside Phosphotransferase
Aph(2'')-Ib, Apo Form
pdb|4DCA|A Chain A, Crystal Structure Of Aminoglycoside Phosphotransferase
Aph(2'')-Ib, Adp-Bound
Length = 320
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 30/149 (20%)
Query: 481 PLYRFEQ--------PYVVYQRNKYNIAP----PQPCFTFVHPSEDKDPDNSRYTKATFI 528
LYRF + P VVYQ +++NI + + H +K+ D Y +ATF+
Sbjct: 79 ELYRFLENCKLSYQIPAVVYQSDRFNIXKYIKGERITYEQYHKLSEKEKDALAYDEATFL 138
Query: 529 AEQDSVLHGIAGYFDTFLYKDINLSIHPDTL---SPGLISWFPVLFPIHEPIQLKTNDEI 585
E LH I D ++S+ D L + +L I E QL T++ +
Sbjct: 139 KE----LHSIE--------IDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDEXL 186
Query: 586 EVHFWRLCDNVKVWYEWLVTKPTPSPIYN 614
E H + +N + ++ K TP ++N
Sbjct: 187 E-HIETIYEN--ILSNAVLFKYTPCLVHN 212
>pdb|4EME|A Chain A, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|B Chain B, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|C Chain C, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|D Chain D, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
Length = 571
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
Query: 449 SIPYNYTSYIAPIMSHKLFTQVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTF 508
S+ NY ++I PI+S LF Q+ H ++ N N Q C +F
Sbjct: 171 SVKINYENHIKPIISTTLFNQLNKCKRNNVHHDTILTTDTKFSHKENSQNKRDDQMCHSF 230
Query: 509 VHPSEDKDPDNSRYTKAT 526
DKD N K T
Sbjct: 231 ----NDKDVSNHNLDKNT 244
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 346 IMVVGAGRGPLVTASLNAAKEANRKV-RVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE 404
++ VG G G L S+ AAK +KV V E A+ ++ K E +T++
Sbjct: 68 VLDVGCGTGIL---SMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLED----TITLIKG 120
Query: 405 DMRTWNAP-EKADIMVSELLGSFGDNE-LSPECLYAAQKYLKEDGISIP 451
+ + P EK D+++SE +G F E + LYA KYL + G P
Sbjct: 121 KIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 169
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/261 (20%), Positives = 98/261 (37%), Gaps = 39/261 (14%)
Query: 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED 405
++ VG G G L S+ AAK +KV AV+++ + + + + V I +
Sbjct: 49 VLDVGCGTGIL---SMFAAKAGAKKV--IAVDQSEILYQAMDIIRLNKLEDTIVLIKGKI 103
Query: 406 MRTWNAPEKADIMVSELLGSFGDNE-LSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSH 464
EK D+++SE +G F E + LYA KYL + G P T
Sbjct: 104 EEVSLPVEKVDVIISEWMGYFLLFESMLDSVLYAKSKYLAKGGSVYPDICT--------- 154
Query: 465 KLFTQVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFV-HPSEDKDPDNSRYT 523
+ V S + +H + ++ Y P+ V H + DP + ++
Sbjct: 155 --ISLVAVSDVSKHADRIAFWDDVYGFNMSCMKKAVIPEAVVEVVDHKTLISDPCDIKHI 212
Query: 524 KA--------------TFIAEQDSVLHGIAGYFDTFLYKD----INLSIHPDTLSPGLIS 565
T + ++ +AGYFD + K+ + S P +
Sbjct: 213 DCHTTSISDLEFSSDFTLRTTKTAMCTAVAGYFDIYFEKNCHNRVVFSTGPQSTKT---H 269
Query: 566 WFPVLFPIHEPIQLKTNDEIE 586
W +F + +P +K + ++
Sbjct: 270 WKQTIFLLEKPFPVKAGEALK 290
>pdb|1J6P|A Chain A, Crystal Structure Of Metal-Dependent Hydrolase Of
CytosinedemaniaseCHLOROHYDROLASE FAMILY (TM0936) FROM
THERMOTOGA Maritima At 1.9 A Resolution
Length = 418
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 462 MSHKLFTQVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSR 521
+S KL V ++ H H P + + +++ + F+ V P ED+ +
Sbjct: 54 LSGKL---VXPALFNTHTHA------PXTLLRGVAEDLSFEEWLFSKVLPIEDRLTEKXA 104
Query: 522 YTKATFIAEQDSVLHGIAGYFDTFLYKD 549
Y T +A+ + HGIAG+ D + +++
Sbjct: 105 YY-GTILAQXEXARHGIAGFVDXYFHEE 131
>pdb|1P1M|A Chain A, Structure Of Thermotoga Maritima Amidohydrolase Tm0936
Bound To Ni And Methionine
pdb|2PLM|A Chain A, Crystal Structure Of The Protein Tm0936 From Thermotoga
Maritima Complexed With Zn And S-Inosylhomocysteine
Length = 406
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 506 FTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTFLYKD 549
F+ V P ED+ + Y T +A+ + HGIAG+ D + +++
Sbjct: 77 FSKVLPIEDRLTEKMAYY-GTILAQMEMARHGIAGFVDMYFHEE 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,231,447
Number of Sequences: 62578
Number of extensions: 816459
Number of successful extensions: 2015
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1975
Number of HSP's gapped (non-prelim): 28
length of query: 626
length of database: 14,973,337
effective HSP length: 105
effective length of query: 521
effective length of database: 8,402,647
effective search space: 4377779087
effective search space used: 4377779087
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)