Query psy17734
Match_columns 626
No_of_seqs 397 out of 2859
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 21:36:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17734.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17734hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0822|consensus 100.0 5E-155 1E-159 1227.2 48.5 605 6-624 19-649 (649)
2 PF05185 PRMT5: PRMT5 arginine 100.0 1E-116 3E-121 963.7 35.4 431 169-606 2-448 (448)
3 PTZ00357 methyltransferase; Pr 100.0 6.8E-82 1.5E-86 682.1 35.3 381 237-624 576-1072(1072)
4 KOG1499|consensus 100.0 2.1E-45 4.5E-50 380.6 24.8 270 307-594 33-314 (346)
5 KOG1500|consensus 100.0 7.2E-37 1.6E-41 310.8 17.9 263 310-591 153-433 (517)
6 KOG1501|consensus 99.9 9.3E-22 2E-26 206.5 15.1 293 304-606 30-352 (636)
7 COG4076 Predicted RNA methylas 99.6 2.6E-15 5.6E-20 143.4 12.7 133 311-464 13-146 (252)
8 PF12847 Methyltransf_18: Meth 99.4 2.5E-12 5.5E-17 114.4 10.9 106 342-452 1-110 (112)
9 COG2230 Cfa Cyclopropane fatty 99.4 4.2E-12 9.1E-17 131.0 11.6 113 340-461 70-184 (283)
10 PF02353 CMAS: Mycolic acid cy 99.3 2.2E-11 4.7E-16 126.6 14.8 156 283-455 8-168 (273)
11 PF01209 Ubie_methyltran: ubiE 99.2 3.3E-11 7.2E-16 122.5 11.3 101 342-451 47-151 (233)
12 PF13847 Methyltransf_31: Meth 99.2 6E-11 1.3E-15 112.2 12.3 107 342-455 3-112 (152)
13 TIGR00138 gidB 16S rRNA methyl 99.2 7.2E-11 1.6E-15 115.6 12.8 99 342-452 42-141 (181)
14 COG2226 UbiE Methylase involve 99.2 1.3E-10 2.9E-15 117.8 13.5 98 342-449 51-152 (238)
15 PF05175 MTS: Methyltransferas 99.2 7.1E-11 1.5E-15 114.2 10.6 103 342-450 31-137 (170)
16 PRK11207 tellurite resistance 99.2 7.8E-11 1.7E-15 116.7 10.6 101 342-450 30-131 (197)
17 TIGR00477 tehB tellurite resis 99.2 6.3E-11 1.4E-15 117.2 9.7 100 342-450 30-130 (195)
18 PRK15451 tRNA cmo(5)U34 methyl 99.2 1.6E-10 3.5E-15 118.3 12.7 108 342-453 56-164 (247)
19 PF06325 PrmA: Ribosomal prote 99.1 1E-10 2.2E-15 122.4 9.4 97 342-452 161-258 (295)
20 PF03848 TehB: Tellurite resis 99.1 1.9E-10 4.2E-15 113.1 10.2 100 342-450 30-130 (192)
21 PLN02396 hexaprenyldihydroxybe 99.1 4.4E-10 9.5E-15 119.4 13.7 101 342-452 131-234 (322)
22 PRK00107 gidB 16S rRNA methylt 99.1 3.5E-10 7.6E-15 111.2 11.8 98 343-452 46-144 (187)
23 PLN02244 tocopherol O-methyltr 99.1 1.7E-09 3.7E-14 116.0 18.0 102 342-452 118-222 (340)
24 TIGR02752 MenG_heptapren 2-hep 99.1 1.3E-09 2.9E-14 109.8 14.7 103 342-451 45-149 (231)
25 PF13659 Methyltransf_26: Meth 99.1 2.7E-10 5.8E-15 102.2 8.5 101 344-450 2-112 (117)
26 COG2242 CobL Precorrin-6B meth 99.1 1.3E-09 2.8E-14 105.7 13.2 103 341-455 33-137 (187)
27 COG2264 PrmA Ribosomal protein 99.1 3.9E-10 8.5E-15 117.4 10.3 101 342-453 162-263 (300)
28 PRK11036 putative S-adenosyl-L 99.1 1E-09 2.2E-14 112.9 13.2 122 314-450 22-146 (255)
29 PRK12335 tellurite resistance 99.1 4.2E-10 9E-15 117.9 10.3 99 343-450 121-220 (287)
30 COG4123 Predicted O-methyltran 99.1 4.9E-10 1.1E-14 113.9 10.3 102 343-450 45-167 (248)
31 COG2227 UbiG 2-polyprenyl-3-me 99.1 1.8E-10 4E-15 115.4 6.0 102 342-455 59-163 (243)
32 PLN02233 ubiquinone biosynthes 99.1 2.9E-09 6.3E-14 110.1 15.1 105 342-452 73-181 (261)
33 TIGR00740 methyltransferase, p 99.0 2E-09 4.4E-14 109.5 13.4 108 342-453 53-161 (239)
34 PRK00377 cbiT cobalt-precorrin 99.0 3.5E-09 7.6E-14 104.8 13.4 101 342-451 40-143 (198)
35 TIGR02469 CbiT precorrin-6Y C5 99.0 3.8E-09 8.3E-14 95.1 12.1 102 342-454 19-123 (124)
36 PF13649 Methyltransf_25: Meth 99.0 5E-10 1.1E-14 98.5 5.7 97 346-447 1-101 (101)
37 PF08241 Methyltransf_11: Meth 99.0 2E-09 4.3E-14 91.9 8.8 92 347-450 1-94 (95)
38 PRK11873 arsM arsenite S-adeno 99.0 5.2E-09 1.1E-13 108.5 13.1 104 342-452 77-182 (272)
39 PRK08287 cobalt-precorrin-6Y C 99.0 5.8E-09 1.3E-13 102.2 12.4 98 342-451 31-129 (187)
40 smart00828 PKS_MT Methyltransf 99.0 4.3E-09 9.3E-14 105.6 11.8 100 345-452 2-103 (224)
41 PRK14103 trans-aconitate 2-met 99.0 3.7E-09 8E-14 108.7 11.4 96 342-451 29-124 (255)
42 TIGR00406 prmA ribosomal prote 99.0 4.4E-09 9.6E-14 110.3 12.2 99 342-452 159-258 (288)
43 PRK15068 tRNA mo(5)U34 methylt 99.0 4.8E-09 1E-13 111.7 12.2 103 342-452 122-225 (322)
44 PLN03075 nicotianamine synthas 98.9 1.3E-08 2.7E-13 106.4 14.9 108 342-453 123-233 (296)
45 PRK13944 protein-L-isoaspartat 98.9 7.9E-09 1.7E-13 103.0 12.8 97 342-450 72-170 (205)
46 TIGR03533 L3_gln_methyl protei 98.9 7.2E-09 1.6E-13 108.5 12.6 104 343-452 122-250 (284)
47 PRK01683 trans-aconitate 2-met 98.9 9.2E-09 2E-13 105.7 13.0 98 342-452 31-129 (258)
48 TIGR00452 methyltransferase, p 98.9 7.1E-09 1.5E-13 109.8 11.8 104 341-452 120-224 (314)
49 PRK00121 trmB tRNA (guanine-N( 98.9 7.7E-09 1.7E-13 102.9 11.2 103 342-450 40-153 (202)
50 TIGR00537 hemK_rel_arch HemK-r 98.9 1.5E-08 3.2E-13 98.6 12.6 100 342-451 19-138 (179)
51 TIGR00080 pimt protein-L-isoas 98.9 1.2E-08 2.6E-13 102.3 12.3 96 342-450 77-174 (215)
52 PRK11805 N5-glutamine S-adenos 98.9 9.1E-09 2E-13 108.9 11.8 103 344-452 135-262 (307)
53 PRK14967 putative methyltransf 98.9 9.2E-09 2E-13 103.7 11.4 100 342-450 36-156 (223)
54 PRK13942 protein-L-isoaspartat 98.9 1.2E-08 2.7E-13 102.2 12.1 96 342-450 76-173 (212)
55 PRK06922 hypothetical protein; 98.9 1.5E-08 3.2E-13 115.0 13.7 147 299-452 370-536 (677)
56 PRK15001 SAM-dependent 23S rib 98.9 9.2E-09 2E-13 111.4 11.5 103 344-451 230-338 (378)
57 PRK10258 biotin biosynthesis p 98.9 1.3E-08 2.9E-13 104.1 11.8 95 342-451 42-138 (251)
58 PF05401 NodS: Nodulation prot 98.9 9.7E-09 2.1E-13 100.5 9.9 101 343-454 44-147 (201)
59 PTZ00098 phosphoethanolamine N 98.9 1.6E-08 3.4E-13 104.8 12.0 102 342-453 52-156 (263)
60 PRK00811 spermidine synthase; 98.9 2E-08 4.3E-13 105.1 12.8 112 342-457 76-195 (283)
61 KOG1270|consensus 98.9 3.3E-09 7.2E-14 107.2 6.5 97 342-450 89-192 (282)
62 PRK00517 prmA ribosomal protei 98.9 8.3E-09 1.8E-13 106.0 9.5 93 342-452 119-212 (250)
63 PRK04457 spermidine synthase; 98.8 2.1E-08 4.5E-13 103.9 12.3 120 321-452 52-176 (262)
64 KOG1540|consensus 98.8 4.6E-08 9.9E-13 98.6 14.0 139 308-450 62-211 (296)
65 PRK11188 rrmJ 23S rRNA methylt 98.8 2.5E-08 5.5E-13 99.8 12.3 95 342-451 51-163 (209)
66 PRK11088 rrmA 23S rRNA methylt 98.8 2.1E-08 4.6E-13 104.2 11.7 111 319-450 67-178 (272)
67 PRK15128 23S rRNA m(5)C1962 me 98.8 1.4E-08 3.1E-13 110.8 10.8 111 342-459 220-345 (396)
68 TIGR02072 BioC biotin biosynth 98.8 3.6E-08 7.7E-13 99.0 12.2 100 342-452 34-134 (240)
69 TIGR00536 hemK_fam HemK family 98.8 2.8E-08 6.1E-13 104.0 11.7 104 344-452 116-243 (284)
70 PRK11705 cyclopropane fatty ac 98.8 2.6E-08 5.7E-13 108.5 11.5 98 342-452 167-266 (383)
71 PF02475 Met_10: Met-10+ like- 98.8 2.5E-08 5.4E-13 99.0 10.3 97 342-449 101-198 (200)
72 PRK04266 fibrillarin; Provisio 98.8 4.2E-08 9.1E-13 99.4 11.8 98 342-451 72-174 (226)
73 PRK14968 putative methyltransf 98.8 4.2E-08 9E-13 95.2 11.2 104 342-451 23-146 (188)
74 PHA03412 putative methyltransf 98.8 2.8E-08 6.1E-13 100.4 9.9 104 343-454 50-164 (241)
75 PRK09489 rsmC 16S ribosomal RN 98.8 4.8E-08 1E-12 104.9 12.1 99 344-450 198-300 (342)
76 KOG4300|consensus 98.8 9.4E-08 2E-12 93.5 12.8 120 319-451 57-180 (252)
77 TIGR00091 tRNA (guanine-N(7)-) 98.8 4.2E-08 9E-13 96.9 10.7 103 343-451 17-130 (194)
78 TIGR00438 rrmJ cell division p 98.8 8.4E-08 1.8E-12 94.1 12.7 95 342-451 32-144 (188)
79 PRK07402 precorrin-6B methylas 98.8 1.3E-07 2.8E-12 93.3 13.9 100 342-453 40-142 (196)
80 TIGR03534 RF_mod_PrmC protein- 98.7 1E-07 2.2E-12 97.0 13.4 103 343-451 88-215 (251)
81 PRK08317 hypothetical protein; 98.7 1.6E-07 3.5E-12 94.0 14.6 103 342-453 19-124 (241)
82 PLN02366 spermidine synthase 98.7 1.2E-07 2.7E-12 100.2 14.2 114 342-459 91-212 (308)
83 PRK06202 hypothetical protein; 98.7 7.6E-08 1.6E-12 97.5 12.1 103 342-450 60-164 (232)
84 PLN02336 phosphoethanolamine N 98.7 6.8E-08 1.5E-12 108.1 12.8 101 342-453 266-369 (475)
85 TIGR02021 BchM-ChlM magnesium 98.7 4.9E-08 1.1E-12 97.9 10.2 99 342-450 55-155 (219)
86 PRK10909 rsmD 16S rRNA m(2)G96 98.7 5.5E-08 1.2E-12 96.7 10.3 101 342-452 53-158 (199)
87 PRK00312 pcm protein-L-isoaspa 98.7 1.2E-07 2.7E-12 94.6 12.9 93 342-450 78-172 (212)
88 smart00138 MeTrc Methyltransfe 98.7 5.6E-08 1.2E-12 100.8 10.4 137 312-454 73-243 (264)
89 PF08242 Methyltransf_12: Meth 98.7 3.4E-09 7.5E-14 92.5 1.0 94 347-449 1-99 (99)
90 PRK00216 ubiE ubiquinone/menaq 98.7 1.4E-07 3E-12 94.8 12.7 104 342-451 51-156 (239)
91 PRK11783 rlmL 23S rRNA m(2)G24 98.7 5E-08 1.1E-12 114.1 10.8 106 342-454 538-657 (702)
92 PRK14904 16S rRNA methyltransf 98.7 1.1E-07 2.4E-12 105.6 12.7 108 342-454 250-378 (445)
93 PRK01544 bifunctional N5-gluta 98.7 7.4E-08 1.6E-12 108.6 11.3 105 343-452 139-268 (506)
94 PLN02781 Probable caffeoyl-CoA 98.7 1.1E-07 2.3E-12 97.0 11.3 104 342-454 68-179 (234)
95 TIGR00095 RNA methyltransferas 98.7 2E-07 4.4E-12 91.9 12.7 104 342-454 49-160 (189)
96 TIGR01177 conserved hypothetic 98.7 1.2E-07 2.6E-12 101.3 11.9 101 342-450 182-291 (329)
97 COG2813 RsmC 16S RNA G1207 met 98.7 1.6E-07 3.5E-12 97.6 12.2 98 344-449 160-262 (300)
98 cd02440 AdoMet_MTases S-adenos 98.7 1.1E-07 2.4E-12 80.6 9.2 101 345-452 1-103 (107)
99 PRK14902 16S rRNA methyltransf 98.7 1.7E-07 3.6E-12 104.2 13.1 103 342-450 250-376 (444)
100 PRK01581 speE spermidine synth 98.7 1.5E-07 3.2E-12 100.8 12.0 109 342-454 150-269 (374)
101 COG2890 HemK Methylase of poly 98.7 1.2E-07 2.6E-12 99.1 10.9 99 345-452 113-237 (280)
102 PLN02336 phosphoethanolamine N 98.7 8.2E-08 1.8E-12 107.4 10.4 103 342-453 37-142 (475)
103 COG2263 Predicted RNA methylas 98.7 9.9E-08 2.2E-12 92.6 9.1 90 340-441 43-135 (198)
104 TIGR02716 C20_methyl_CrtF C-20 98.6 1.5E-07 3.2E-12 99.5 11.2 105 342-453 149-254 (306)
105 PRK09328 N5-glutamine S-adenos 98.6 2.1E-07 4.5E-12 96.3 12.1 103 342-451 108-236 (275)
106 TIGR00446 nop2p NOL1/NOP2/sun 98.6 1.7E-07 3.7E-12 97.1 11.2 105 342-451 71-197 (264)
107 PRK14901 16S rRNA methyltransf 98.6 2.3E-07 5.1E-12 102.8 12.8 109 342-455 252-386 (434)
108 TIGR00417 speE spermidine synt 98.6 3.1E-07 6.7E-12 95.5 12.8 108 343-454 73-187 (270)
109 PRK14966 unknown domain/N5-glu 98.6 3.3E-07 7.1E-12 99.9 13.3 100 343-450 252-378 (423)
110 PTZ00146 fibrillarin; Provisio 98.6 2.8E-07 6.1E-12 96.1 12.3 101 341-451 131-235 (293)
111 TIGR03438 probable methyltrans 98.6 3.9E-07 8.5E-12 96.2 13.4 105 342-451 63-175 (301)
112 TIGR03704 PrmC_rel_meth putati 98.6 2.2E-07 4.7E-12 95.7 11.1 101 343-452 87-215 (251)
113 PHA03411 putative methyltransf 98.6 3.8E-07 8.1E-12 94.3 12.6 69 344-423 66-135 (279)
114 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 4.9E-07 1.1E-11 89.9 13.2 101 342-451 39-141 (223)
115 PRK13943 protein-L-isoaspartat 98.6 4E-07 8.6E-12 96.9 13.2 96 342-450 80-177 (322)
116 PLN02490 MPBQ/MSBQ methyltrans 98.6 2.2E-07 4.7E-12 99.5 11.1 97 342-450 113-212 (340)
117 PF13489 Methyltransf_23: Meth 98.6 1.5E-07 3.2E-12 88.6 8.7 91 342-452 22-114 (161)
118 PRK03612 spermidine synthase; 98.6 3.3E-07 7.2E-12 103.8 12.9 110 342-455 297-417 (521)
119 COG2519 GCD14 tRNA(1-methylade 98.6 4.4E-07 9.4E-12 92.0 12.0 99 341-450 93-192 (256)
120 PLN02672 methionine S-methyltr 98.6 2.3E-07 5E-12 111.4 11.7 112 342-459 118-284 (1082)
121 PRK14903 16S rRNA methyltransf 98.6 4.4E-07 9.6E-12 100.5 13.0 109 342-455 237-368 (431)
122 PRK05785 hypothetical protein; 98.5 1.1E-06 2.4E-11 89.1 13.9 87 343-447 52-141 (226)
123 COG2518 Pcm Protein-L-isoaspar 98.5 7.9E-07 1.7E-11 88.2 12.5 94 341-450 71-166 (209)
124 PRK10901 16S rRNA methyltransf 98.5 4.4E-07 9.6E-12 100.4 12.0 105 342-453 244-372 (427)
125 PF01135 PCMT: Protein-L-isoas 98.5 2.3E-07 5.1E-12 92.9 8.8 96 342-450 72-169 (209)
126 KOG2904|consensus 98.5 5.3E-07 1.2E-11 91.7 11.2 123 320-452 131-284 (328)
127 PF03602 Cons_hypoth95: Conser 98.5 2.3E-07 5.1E-12 91.0 8.2 120 320-453 26-153 (183)
128 TIGR03840 TMPT_Se_Te thiopurin 98.5 4.3E-07 9.3E-12 91.3 9.9 101 342-451 34-150 (213)
129 TIGR01983 UbiG ubiquinone bios 98.5 9.6E-07 2.1E-11 88.5 12.4 99 342-451 45-147 (224)
130 PRK05134 bifunctional 3-demeth 98.5 5.4E-07 1.2E-11 91.1 10.6 99 342-452 48-150 (233)
131 PRK14121 tRNA (guanine-N(7)-)- 98.5 8.3E-07 1.8E-11 96.2 12.4 104 342-451 122-233 (390)
132 smart00650 rADc Ribosomal RNA 98.5 9E-07 1.9E-11 85.4 11.2 96 342-452 13-112 (169)
133 COG4106 Tam Trans-aconitate me 98.5 3.1E-07 6.8E-12 90.6 7.7 99 342-452 30-128 (257)
134 PF08003 Methyltransf_9: Prote 98.5 6.7E-07 1.4E-11 93.1 10.5 100 342-452 115-218 (315)
135 COG2520 Predicted methyltransf 98.5 4.9E-07 1.1E-11 96.2 9.5 97 342-450 188-286 (341)
136 TIGR00563 rsmB ribosomal RNA s 98.5 8.4E-07 1.8E-11 98.2 11.6 109 342-455 238-370 (426)
137 PLN02476 O-methyltransferase 98.5 6.8E-07 1.5E-11 93.0 10.0 106 342-456 118-231 (278)
138 PRK13255 thiopurine S-methyltr 98.5 5.8E-07 1.3E-11 90.7 9.3 98 342-448 37-150 (218)
139 PRK07580 Mg-protoporphyrin IX 98.4 1E-06 2.2E-11 88.6 10.5 97 342-448 63-161 (230)
140 PRK13168 rumA 23S rRNA m(5)U19 98.4 2.1E-06 4.7E-11 95.4 13.9 95 342-450 297-397 (443)
141 TIGR02085 meth_trns_rumB 23S r 98.4 1.8E-06 4E-11 93.9 13.0 95 343-450 234-331 (374)
142 PRK03522 rumB 23S rRNA methylu 98.4 2.5E-06 5.4E-11 90.7 13.4 96 342-450 173-271 (315)
143 TIGR03587 Pse_Me-ase pseudamin 98.4 2.3E-06 4.9E-11 85.5 11.8 92 342-443 43-134 (204)
144 PLN02585 magnesium protoporphy 98.4 1.4E-06 2.9E-11 92.6 10.7 99 342-450 144-247 (315)
145 PF01596 Methyltransf_3: O-met 98.4 5.6E-07 1.2E-11 89.9 7.3 109 342-459 45-161 (205)
146 PRK04338 N(2),N(2)-dimethylgua 98.4 1.4E-06 3.1E-11 94.8 10.9 98 343-452 58-157 (382)
147 PLN02823 spermine synthase 98.4 2.8E-06 6.2E-11 90.9 12.4 108 343-454 104-221 (336)
148 PF01564 Spermine_synth: Sperm 98.4 1.5E-06 3.3E-11 89.2 9.3 120 342-469 76-203 (246)
149 COG0421 SpeE Spermidine syntha 98.3 5.9E-06 1.3E-10 86.3 12.8 112 344-460 78-197 (282)
150 TIGR00479 rumA 23S rRNA (uraci 98.3 5.9E-06 1.3E-10 91.6 13.6 96 342-450 292-393 (431)
151 COG4122 Predicted O-methyltran 98.3 2.6E-06 5.6E-11 85.6 9.6 107 342-459 59-172 (219)
152 KOG1271|consensus 98.3 4E-06 8.7E-11 80.8 10.1 105 345-454 70-182 (227)
153 PF08704 GCD14: tRNA methyltra 98.3 6E-06 1.3E-10 84.7 12.0 99 341-450 39-143 (247)
154 COG0742 N6-adenine-specific me 98.2 1.6E-05 3.4E-10 77.9 12.5 121 320-455 27-156 (187)
155 KOG0820|consensus 98.2 5.5E-06 1.2E-10 84.5 9.5 74 342-423 58-132 (315)
156 PRK11727 23S rRNA mA1618 methy 98.2 1.3E-05 2.7E-10 85.3 12.7 77 342-423 114-198 (321)
157 PTZ00338 dimethyladenosine tra 98.2 4.8E-06 1E-10 87.7 9.0 76 342-425 36-112 (294)
158 TIGR02081 metW methionine bios 98.2 6.1E-06 1.3E-10 81.3 9.1 96 342-452 13-111 (194)
159 COG1092 Predicted SAM-dependen 98.2 5.5E-06 1.2E-10 90.0 9.5 112 342-459 217-342 (393)
160 KOG3191|consensus 98.2 1.4E-05 3.1E-10 77.1 10.7 113 343-468 44-176 (209)
161 PLN02589 caffeoyl-CoA O-methyl 98.2 7.3E-06 1.6E-10 84.2 9.1 108 342-458 79-195 (247)
162 PRK14896 ksgA 16S ribosomal RN 98.1 1.1E-05 2.4E-10 83.4 10.3 72 342-424 29-101 (258)
163 PRK10611 chemotaxis methyltran 98.1 5.2E-06 1.1E-10 87.0 7.9 131 312-455 96-264 (287)
164 PF00891 Methyltransf_2: O-met 98.1 1.2E-05 2.5E-10 81.9 10.1 132 306-453 60-199 (241)
165 PF12147 Methyltransf_20: Puta 98.1 4.9E-05 1.1E-09 78.7 13.5 124 321-451 118-247 (311)
166 TIGR00308 TRM1 tRNA(guanine-26 98.1 1.5E-05 3.2E-10 86.6 9.9 98 343-452 45-146 (374)
167 COG2521 Predicted archaeal met 98.1 3.9E-06 8.4E-11 83.8 4.7 102 342-451 134-243 (287)
168 PRK00274 ksgA 16S ribosomal RN 98.1 9.6E-06 2.1E-10 84.5 7.8 72 342-423 42-114 (272)
169 COG4976 Predicted methyltransf 98.0 2.8E-06 6E-11 84.6 3.5 97 343-455 126-227 (287)
170 PRK00536 speE spermidine synth 98.0 5.5E-05 1.2E-09 78.3 12.9 104 342-460 72-178 (262)
171 PF02390 Methyltransf_4: Putat 98.0 3.6E-05 7.8E-10 76.4 11.1 101 344-450 19-130 (195)
172 PF07021 MetW: Methionine bios 98.0 1.3E-05 2.9E-10 78.5 7.6 96 342-453 13-112 (193)
173 PF10672 Methyltrans_SAM: S-ad 98.0 2E-05 4.4E-10 82.4 9.4 111 342-458 123-243 (286)
174 TIGR02143 trmA_only tRNA (urac 98.0 4.5E-05 9.8E-10 82.5 12.3 92 344-450 199-308 (353)
175 PF01170 UPF0020: Putative RNA 98.0 1.3E-05 2.9E-10 78.3 7.5 102 342-446 28-144 (179)
176 PRK05031 tRNA (uracil-5-)-meth 98.0 5.2E-05 1.1E-09 82.2 12.8 90 344-448 208-315 (362)
177 PF10294 Methyltransf_16: Puta 98.0 2.5E-05 5.4E-10 76.0 8.4 99 341-448 44-151 (173)
178 COG0030 KsgA Dimethyladenosine 97.9 2.1E-05 4.5E-10 80.9 7.7 75 342-425 30-106 (259)
179 KOG2361|consensus 97.9 9.3E-06 2E-10 81.6 4.8 109 345-458 74-188 (264)
180 PRK13256 thiopurine S-methyltr 97.9 4.9E-05 1.1E-09 77.0 9.5 102 342-450 43-160 (226)
181 PF05148 Methyltransf_8: Hypot 97.9 5.9E-05 1.3E-09 74.8 9.6 125 306-458 28-163 (219)
182 PF01739 CheR: CheR methyltran 97.9 2E-05 4.4E-10 78.2 6.2 138 312-455 5-177 (196)
183 TIGR00755 ksgA dimethyladenosi 97.9 4.3E-05 9.3E-10 78.7 8.6 72 342-423 29-103 (253)
184 PRK11933 yebU rRNA (cytosine-C 97.8 0.00015 3.3E-09 81.0 12.5 109 342-455 113-244 (470)
185 KOG3010|consensus 97.8 7.6E-06 1.6E-10 82.3 1.6 110 344-466 35-148 (261)
186 KOG3420|consensus 97.8 1.8E-05 3.9E-10 73.7 3.7 77 339-423 45-123 (185)
187 PF05724 TPMT: Thiopurine S-me 97.8 8.3E-05 1.8E-09 75.1 8.8 103 342-450 37-152 (218)
188 KOG3045|consensus 97.8 0.00019 4E-09 73.0 11.1 120 308-464 138-268 (325)
189 PF02527 GidB: rRNA small subu 97.8 0.00027 5.8E-09 69.5 12.0 99 345-455 51-150 (184)
190 PF13679 Methyltransf_32: Meth 97.7 0.00026 5.5E-09 66.4 10.3 107 342-454 25-135 (141)
191 TIGR00478 tly hemolysin TlyA f 97.7 0.00014 3E-09 73.9 8.9 93 341-450 74-168 (228)
192 PF03291 Pox_MCEL: mRNA cappin 97.7 0.0001 2.3E-09 78.8 8.3 103 342-450 62-183 (331)
193 COG0220 Predicted S-adenosylme 97.7 0.00024 5.3E-09 72.1 10.5 101 344-450 50-161 (227)
194 PF05219 DREV: DREV methyltran 97.7 0.00034 7.4E-09 71.6 11.2 90 342-451 94-186 (265)
195 COG2265 TrmA SAM-dependent met 97.7 0.00013 2.9E-09 80.6 8.7 95 342-449 293-392 (432)
196 COG3963 Phospholipid N-methylt 97.6 0.00018 3.9E-09 68.7 7.9 104 342-455 48-158 (194)
197 PRK04148 hypothetical protein; 97.6 0.00053 1.2E-08 63.8 10.8 65 342-420 16-83 (134)
198 KOG2899|consensus 97.6 0.00032 7E-09 70.7 9.3 106 340-450 56-206 (288)
199 PF03059 NAS: Nicotianamine sy 97.6 0.0018 3.9E-08 67.5 14.9 127 319-452 99-229 (276)
200 KOG1661|consensus 97.5 0.00054 1.2E-08 67.8 10.1 101 342-452 82-193 (237)
201 COG1189 Predicted rRNA methyla 97.5 0.00029 6.2E-09 71.2 8.3 94 341-451 78-176 (245)
202 PRK11783 rlmL 23S rRNA m(2)G24 97.5 0.00053 1.2E-08 80.6 11.8 81 342-423 190-312 (702)
203 PF00398 RrnaAD: Ribosomal RNA 97.5 0.00021 4.6E-09 74.0 7.6 73 342-423 30-106 (262)
204 COG4262 Predicted spermidine s 97.5 0.00057 1.2E-08 72.4 10.5 117 342-462 289-416 (508)
205 PF01728 FtsJ: FtsJ-like methy 97.5 3.4E-05 7.3E-10 75.1 1.1 95 342-451 23-137 (181)
206 COG0293 FtsJ 23S rRNA methylas 97.5 0.00088 1.9E-08 66.6 10.9 111 342-471 45-173 (205)
207 PF09445 Methyltransf_15: RNA 97.4 0.00026 5.6E-09 68.2 6.0 72 345-423 2-78 (163)
208 PRK01544 bifunctional N5-gluta 97.4 0.00088 1.9E-08 75.9 11.3 103 342-450 347-459 (506)
209 PF05958 tRNA_U5-meth_tr: tRNA 97.4 0.00068 1.5E-08 73.3 9.4 84 345-440 199-300 (352)
210 KOG2940|consensus 97.3 0.00025 5.4E-09 70.8 5.2 121 320-452 52-173 (325)
211 PF08123 DOT1: Histone methyla 97.3 0.00087 1.9E-08 67.0 8.9 102 342-450 42-155 (205)
212 COG3897 Predicted methyltransf 97.3 0.0009 2E-08 65.6 8.1 71 340-420 77-148 (218)
213 PF01269 Fibrillarin: Fibrilla 97.3 0.0024 5.3E-08 64.1 11.1 101 341-451 72-176 (229)
214 COG0357 GidB Predicted S-adeno 97.2 0.0012 2.5E-08 66.4 8.7 96 343-450 68-165 (215)
215 TIGR01444 fkbM_fam methyltrans 97.2 0.00081 1.8E-08 62.4 7.0 60 345-410 1-61 (143)
216 KOG1663|consensus 97.2 0.002 4.3E-08 64.8 9.8 113 342-464 73-193 (237)
217 KOG1975|consensus 97.2 0.001 2.3E-08 69.6 8.0 103 342-450 117-234 (389)
218 PLN02232 ubiquinone biosynthes 97.2 0.0011 2.4E-08 63.5 7.6 76 374-452 1-80 (160)
219 PTZ00372 endonuclease 4-like p 97.2 0.012 2.6E-07 64.6 16.2 198 3-224 126-352 (413)
220 PF05891 Methyltransf_PK: AdoM 97.1 0.00055 1.2E-08 68.5 4.9 104 342-452 55-160 (218)
221 COG1352 CheR Methylase of chem 97.1 0.0034 7.4E-08 65.2 10.7 136 311-453 70-241 (268)
222 PF13578 Methyltransf_24: Meth 97.1 0.00016 3.5E-09 63.9 0.7 102 347-453 1-105 (106)
223 PRK00050 16S rRNA m(4)C1402 me 97.1 0.0012 2.5E-08 69.7 7.1 74 342-422 19-98 (296)
224 KOG2915|consensus 97.0 0.0046 1E-07 63.5 10.7 97 341-448 104-204 (314)
225 PRK11760 putative 23S rRNA C24 97.0 0.0019 4.2E-08 68.8 8.3 109 341-473 210-319 (357)
226 COG1041 Predicted DNA modifica 97.0 0.0018 3.9E-08 69.0 8.0 101 342-450 197-307 (347)
227 KOG1709|consensus 97.0 0.0078 1.7E-07 60.0 11.3 99 342-450 101-203 (271)
228 PF07942 N2227: N2227-like pro 96.9 0.0088 1.9E-07 62.2 11.8 116 326-450 40-199 (270)
229 PF09243 Rsm22: Mitochondrial 96.9 0.006 1.3E-07 63.8 10.6 86 340-433 31-117 (274)
230 COG0144 Sun tRNA and rRNA cyto 96.9 0.0065 1.4E-07 65.9 11.1 120 341-466 155-299 (355)
231 KOG1541|consensus 96.9 0.0028 6.1E-08 63.3 7.5 100 342-454 50-161 (270)
232 PF06080 DUF938: Protein of un 96.9 0.0046 9.9E-08 61.6 8.7 119 324-452 12-140 (204)
233 KOG1501|consensus 96.8 0.0055 1.2E-07 66.4 9.7 190 398-601 416-629 (636)
234 PF04816 DUF633: Family of unk 96.8 0.0031 6.6E-08 63.2 7.4 104 346-465 1-106 (205)
235 TIGR03439 methyl_EasF probable 96.8 0.025 5.5E-07 60.4 14.6 106 342-451 76-195 (319)
236 KOG2187|consensus 96.8 0.00087 1.9E-08 74.2 3.3 60 342-409 383-443 (534)
237 COG0116 Predicted N6-adenine-s 96.7 0.009 2E-07 64.6 10.5 81 342-423 191-308 (381)
238 COG0500 SmtA SAM-dependent met 96.7 0.024 5.2E-07 49.7 11.5 102 346-455 52-157 (257)
239 PF02384 N6_Mtase: N-6 DNA Met 96.6 0.0073 1.6E-07 63.8 9.0 112 342-453 46-186 (311)
240 COG0648 Nfo Endonuclease IV [D 96.4 0.43 9.3E-06 50.0 19.7 237 9-274 3-273 (280)
241 PRK10742 putative methyltransf 96.2 0.018 4E-07 59.0 8.4 73 345-424 91-174 (250)
242 PF05971 Methyltransf_10: Prot 96.2 0.024 5.2E-07 59.8 9.3 76 343-423 103-186 (299)
243 TIGR00587 nfo apurinic endonuc 96.2 0.21 4.6E-06 52.0 16.5 106 9-122 2-109 (274)
244 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.0 0.016 3.5E-07 60.9 7.0 109 342-455 85-221 (283)
245 PF06962 rRNA_methylase: Putat 95.8 0.04 8.8E-07 51.7 8.1 87 372-460 1-99 (140)
246 PF03141 Methyltransf_29: Puta 95.8 0.012 2.7E-07 65.3 5.4 105 342-457 117-223 (506)
247 PF04989 CmcI: Cephalosporin h 95.7 0.079 1.7E-06 53.0 10.3 122 313-451 15-145 (206)
248 KOG4589|consensus 95.6 0.023 5E-07 55.5 5.8 95 341-450 68-181 (232)
249 TIGR02987 met_A_Alw26 type II 95.5 0.043 9.3E-07 62.6 8.8 80 342-423 31-121 (524)
250 PHA01634 hypothetical protein 95.5 0.049 1.1E-06 50.2 7.2 70 342-421 28-99 (156)
251 KOG1227|consensus 95.4 0.0056 1.2E-07 63.7 1.1 94 343-448 195-290 (351)
252 PF02005 TRM: N2,N2-dimethylgu 95.3 0.058 1.3E-06 59.0 8.6 97 343-450 50-151 (377)
253 PF01234 NNMT_PNMT_TEMT: NNMT/ 95.3 0.041 8.8E-07 56.9 6.9 105 342-452 56-198 (256)
254 COG1889 NOP1 Fibrillarin-like 95.1 0.14 3E-06 50.9 9.4 99 340-450 74-177 (231)
255 PF11968 DUF3321: Putative met 95.1 0.066 1.4E-06 53.8 7.3 83 343-448 52-139 (219)
256 KOG3178|consensus 95.0 0.15 3.2E-06 54.6 10.2 93 343-450 178-272 (342)
257 COG2384 Predicted SAM-dependen 94.7 0.18 3.8E-06 50.8 9.2 107 343-465 17-125 (226)
258 KOG3987|consensus 94.6 0.0079 1.7E-07 59.5 -0.4 92 341-451 111-205 (288)
259 KOG1562|consensus 94.6 0.066 1.4E-06 55.9 6.0 112 342-457 121-240 (337)
260 PF04672 Methyltransf_19: S-ad 94.4 0.29 6.3E-06 50.8 10.4 109 343-456 69-193 (267)
261 KOG2730|consensus 93.9 0.075 1.6E-06 53.3 4.7 61 343-410 95-156 (263)
262 COG1063 Tdh Threonine dehydrog 93.4 0.68 1.5E-05 50.1 11.4 91 344-451 170-267 (350)
263 COG1064 AdhP Zn-dependent alco 93.3 0.73 1.6E-05 49.6 11.2 92 341-453 165-259 (339)
264 PRK09424 pntA NAD(P) transhydr 93.3 0.68 1.5E-05 52.6 11.6 98 341-452 163-284 (509)
265 KOG1596|consensus 93.2 0.26 5.7E-06 50.1 7.2 100 342-451 156-259 (317)
266 PRK01747 mnmC bifunctional tRN 93.0 0.45 9.8E-06 55.8 10.0 111 342-452 57-205 (662)
267 COG1867 TRM1 N2,N2-dimethylgua 92.9 0.38 8.2E-06 51.9 8.3 96 343-450 53-151 (380)
268 smart00518 AP2Ec AP endonuclea 92.7 1.7 3.6E-05 44.9 12.8 165 10-197 2-176 (273)
269 PRK01060 endonuclease IV; Prov 92.6 1.3 2.8E-05 45.9 11.8 121 9-138 3-134 (281)
270 PRK09880 L-idonate 5-dehydroge 92.2 0.9 1.9E-05 48.5 10.3 93 342-452 169-265 (343)
271 KOG4058|consensus 92.1 0.32 7E-06 46.0 5.8 97 344-452 74-171 (199)
272 PF07091 FmrO: Ribosomal RNA m 91.8 0.52 1.1E-05 48.5 7.4 71 343-420 106-177 (251)
273 KOG2798|consensus 91.7 0.86 1.9E-05 48.2 8.8 35 414-451 259-294 (369)
274 TIGR00006 S-adenosyl-methyltra 91.5 0.66 1.4E-05 49.3 8.1 74 342-422 20-100 (305)
275 KOG1122|consensus 91.3 1.2 2.5E-05 48.9 9.7 114 340-458 239-376 (460)
276 KOG1253|consensus 90.7 0.35 7.6E-06 53.8 5.3 102 342-453 109-216 (525)
277 PF07757 AdoMet_MTase: Predict 90.5 0.33 7.2E-06 43.5 4.0 60 314-379 30-89 (112)
278 PF04445 SAM_MT: Putative SAM- 90.5 0.63 1.4E-05 47.5 6.5 74 344-424 77-161 (234)
279 KOG0024|consensus 90.4 2.5 5.4E-05 45.1 10.9 91 342-450 169-270 (354)
280 KOG1099|consensus 90.4 0.13 2.8E-06 51.9 1.5 116 343-474 42-180 (294)
281 KOG1269|consensus 89.9 0.4 8.8E-06 52.2 4.8 101 342-452 110-214 (364)
282 PF03141 Methyltransf_29: Puta 89.3 0.81 1.8E-05 51.3 6.7 99 343-453 366-467 (506)
283 COG4798 Predicted methyltransf 89.3 0.68 1.5E-05 45.9 5.3 106 341-451 47-164 (238)
284 PF02636 Methyltransf_28: Puta 89.1 0.73 1.6E-05 47.4 5.9 41 343-383 19-63 (252)
285 PRK05476 S-adenosyl-L-homocyst 89.0 17 0.00037 40.6 16.8 86 342-451 211-297 (425)
286 cd00315 Cyt_C5_DNA_methylase C 88.7 0.83 1.8E-05 47.8 6.1 66 345-422 2-70 (275)
287 PF01861 DUF43: Protein of unk 88.7 10 0.00022 39.0 13.5 95 342-447 44-142 (243)
288 TIGR03366 HpnZ_proposed putati 88.6 1.7 3.8E-05 44.9 8.4 94 342-452 120-217 (280)
289 cd00019 AP2Ec AP endonuclease 88.5 9.6 0.00021 39.4 13.8 162 18-197 10-179 (279)
290 KOG2352|consensus 88.2 4.3 9.4E-05 45.5 11.3 100 344-450 50-158 (482)
291 cd08230 glucose_DH Glucose deh 88.1 2.7 5.9E-05 45.0 9.7 90 342-451 172-267 (355)
292 cd08237 ribitol-5-phosphate_DH 87.4 4.6 0.0001 43.1 10.9 90 342-451 163-254 (341)
293 KOG2920|consensus 86.6 0.66 1.4E-05 48.4 3.7 36 341-381 115-150 (282)
294 TIGR02822 adh_fam_2 zinc-bindi 86.3 6.4 0.00014 41.8 11.3 88 342-451 165-252 (329)
295 cd00401 AdoHcyase S-adenosyl-L 85.8 4.5 9.7E-05 44.9 9.9 87 342-453 201-289 (413)
296 KOG3201|consensus 85.7 0.27 6E-06 47.2 0.4 101 342-448 29-135 (201)
297 COG5459 Predicted rRNA methyla 85.7 1.5 3.2E-05 47.1 5.7 41 339-383 110-151 (484)
298 KOG2793|consensus 85.5 4.9 0.00011 41.5 9.3 96 343-447 87-193 (248)
299 TIGR00936 ahcY adenosylhomocys 84.6 14 0.00031 40.9 13.1 87 342-452 194-281 (406)
300 TIGR03451 mycoS_dep_FDH mycoth 84.4 4.5 9.9E-05 43.3 9.1 93 342-452 176-275 (358)
301 cd08239 THR_DH_like L-threonin 84.2 3.2 7E-05 43.9 7.7 94 342-450 163-259 (339)
302 TIGR00027 mthyl_TIGR00027 meth 84.1 8 0.00017 40.1 10.4 124 316-454 64-198 (260)
303 PF05050 Methyltransf_21: Meth 84.1 2.6 5.7E-05 39.3 6.3 58 348-406 1-61 (167)
304 cd08281 liver_ADH_like1 Zinc-d 82.4 3.7 8E-05 44.3 7.4 92 342-451 191-288 (371)
305 KOG2078|consensus 82.1 0.74 1.6E-05 50.5 1.8 62 342-409 249-311 (495)
306 TIGR01202 bchC 2-desacetyl-2-h 81.9 8.9 0.00019 40.3 9.9 84 343-450 145-228 (308)
307 COG0275 Predicted S-adenosylme 81.8 3.8 8.2E-05 43.4 6.8 75 342-422 23-104 (314)
308 PF05711 TylF: Macrocin-O-meth 81.5 6.7 0.00015 40.5 8.5 129 316-456 56-215 (248)
309 cd05188 MDR Medium chain reduc 81.3 5.2 0.00011 40.0 7.7 90 342-450 134-229 (271)
310 PRK10309 galactitol-1-phosphat 81.2 5.5 0.00012 42.4 8.1 93 342-451 160-258 (347)
311 PLN02740 Alcohol dehydrogenase 80.8 10 0.00023 41.1 10.3 91 342-451 198-298 (381)
312 PF00145 DNA_methylase: C-5 cy 80.4 3 6.5E-05 43.7 5.7 65 345-422 2-69 (335)
313 PF05206 TRM13: Methyltransfer 79.6 4.4 9.6E-05 42.1 6.5 69 342-411 18-87 (259)
314 cd08254 hydroxyacyl_CoA_DH 6-h 79.6 11 0.00023 39.4 9.6 92 342-452 165-262 (338)
315 TIGR03201 dearomat_had 6-hydro 79.4 17 0.00036 38.8 11.1 38 342-383 166-203 (349)
316 TIGR00561 pntA NAD(P) transhyd 79.2 8.5 0.00018 43.9 9.0 38 342-383 163-200 (511)
317 PRK08945 putative oxoacyl-(acy 79.2 12 0.00027 37.4 9.6 76 342-422 11-100 (247)
318 PF11599 AviRa: RRNA methyltra 78.4 13 0.00028 37.7 8.9 103 342-448 51-209 (246)
319 KOG2198|consensus 77.6 20 0.00044 39.0 10.7 127 341-471 154-312 (375)
320 KOG1201|consensus 77.0 12 0.00025 39.7 8.6 75 340-421 35-121 (300)
321 cd08283 FDH_like_1 Glutathione 77.0 8.1 0.00017 42.0 8.0 100 342-451 184-304 (386)
322 PF07279 DUF1442: Protein of u 76.6 15 0.00033 37.1 8.9 76 343-421 42-122 (218)
323 COG1568 Predicted methyltransf 76.1 13 0.00027 39.1 8.3 76 340-422 150-229 (354)
324 PF01555 N6_N4_Mtase: DNA meth 75.1 7 0.00015 38.4 6.3 36 342-383 191-226 (231)
325 TIGR02825 B4_12hDH leukotriene 74.2 36 0.00079 35.6 11.8 90 342-450 138-234 (325)
326 cd08231 MDR_TM0436_like Hypoth 74.1 22 0.00047 38.0 10.2 94 342-450 177-277 (361)
327 PRK11524 putative methyltransf 74.1 8.6 0.00019 40.3 6.9 42 342-389 208-250 (284)
328 PLN03209 translocon at the inn 74.0 15 0.00032 42.6 9.2 77 341-421 78-166 (576)
329 PLN02494 adenosylhomocysteinas 73.9 16 0.00035 41.2 9.3 98 342-466 253-352 (477)
330 KOG1331|consensus 73.9 2.2 4.8E-05 44.6 2.4 93 342-450 45-140 (293)
331 TIGR02818 adh_III_F_hyde S-(hy 73.3 22 0.00048 38.3 10.1 93 342-450 185-284 (368)
332 PF02254 TrkA_N: TrkA-N domain 73.2 6.9 0.00015 34.6 5.2 63 346-420 1-68 (116)
333 COG0286 HsdM Type I restrictio 73.1 18 0.00039 41.1 9.6 83 342-425 186-275 (489)
334 PLN02427 UDP-apiose/xylose syn 72.9 9 0.0002 41.6 7.0 76 342-420 13-92 (386)
335 cd08234 threonine_DH_like L-th 72.3 31 0.00068 36.0 10.8 92 342-451 159-255 (334)
336 PLN02586 probable cinnamyl alc 72.3 23 0.00049 38.2 9.9 88 342-450 183-275 (360)
337 cd08232 idonate-5-DH L-idonate 72.2 18 0.00038 38.1 8.9 91 342-450 165-259 (339)
338 KOG2651|consensus 72.2 6.2 0.00013 43.0 5.2 37 342-383 153-189 (476)
339 PLN02827 Alcohol dehydrogenase 72.0 23 0.0005 38.5 9.9 91 342-451 193-293 (378)
340 cd08285 NADP_ADH NADP(H)-depen 72.0 14 0.00029 39.4 8.0 91 342-450 166-263 (351)
341 TIGR02356 adenyl_thiF thiazole 71.7 13 0.00027 37.0 7.1 35 342-379 20-54 (202)
342 COG3623 SgaU Putative L-xylulo 71.5 7.3 0.00016 39.7 5.2 103 8-121 5-116 (287)
343 PRK14106 murD UDP-N-acetylmura 71.1 24 0.00052 39.2 10.0 69 342-420 4-74 (450)
344 PRK07533 enoyl-(acyl carrier p 71.1 17 0.00037 37.0 8.2 76 342-422 9-96 (258)
345 COG3315 O-Methyltransferase in 71.0 19 0.0004 38.3 8.6 121 316-451 75-207 (297)
346 COG1565 Uncharacterized conser 71.0 12 0.00027 40.5 7.2 42 343-384 78-123 (370)
347 PRK08644 thiamine biosynthesis 71.0 22 0.00048 35.7 8.8 74 343-420 28-123 (212)
348 PF01795 Methyltransf_5: MraW 70.7 9.3 0.0002 40.8 6.2 74 342-422 20-101 (310)
349 PTZ00075 Adenosylhomocysteinas 70.4 13 0.00028 42.0 7.5 88 341-452 252-340 (476)
350 PRK12475 thiamine/molybdopteri 70.2 15 0.00032 39.7 7.8 75 342-420 23-122 (338)
351 cd08278 benzyl_alcohol_DH Benz 70.0 12 0.00026 40.2 7.1 90 342-450 186-282 (365)
352 cd08277 liver_alcohol_DH_like 69.8 27 0.00058 37.5 9.8 95 342-452 184-285 (365)
353 PRK05854 short chain dehydroge 69.8 35 0.00075 36.0 10.4 77 342-422 13-101 (313)
354 cd05285 sorbitol_DH Sorbitol d 69.6 31 0.00068 36.4 10.1 91 342-450 162-262 (343)
355 PRK09291 short chain dehydroge 69.3 29 0.00063 34.7 9.4 72 344-421 3-80 (257)
356 cd08261 Zn_ADH7 Alcohol dehydr 69.3 15 0.00033 38.6 7.6 93 342-450 159-255 (337)
357 cd08286 FDH_like_ADH2 formalde 69.0 43 0.00092 35.3 11.0 95 342-451 166-264 (345)
358 PRK06914 short chain dehydroge 69.0 26 0.00056 35.8 9.0 75 343-421 3-88 (280)
359 PRK07326 short chain dehydroge 68.7 26 0.00056 34.6 8.7 73 342-421 5-89 (237)
360 PRK12823 benD 1,6-dihydroxycyc 68.4 25 0.00055 35.3 8.8 75 342-422 7-92 (260)
361 PRK08703 short chain dehydroge 68.4 31 0.00067 34.3 9.3 76 342-422 5-95 (239)
362 PRK08213 gluconate 5-dehydroge 68.1 30 0.00065 34.9 9.2 75 342-422 11-97 (259)
363 COG4301 Uncharacterized conser 68.0 72 0.0016 33.2 11.4 146 300-450 38-190 (321)
364 PRK13699 putative methylase; P 67.5 13 0.00028 37.8 6.3 42 342-389 163-205 (227)
365 PLN02178 cinnamyl-alcohol dehy 67.3 33 0.00073 37.3 9.9 91 342-450 178-270 (375)
366 TIGR00675 dcm DNA-methyltransf 67.2 7.2 0.00016 41.6 4.6 65 346-422 1-67 (315)
367 COG0270 Dcm Site-specific DNA 67.1 13 0.00029 39.8 6.6 69 343-422 3-75 (328)
368 PRK08303 short chain dehydroge 67.1 23 0.00051 37.3 8.4 75 342-422 7-103 (305)
369 PLN02989 cinnamyl-alcohol dehy 67.0 22 0.00049 37.2 8.3 76 342-421 4-84 (325)
370 cd05278 FDH_like Formaldehyde 67.0 19 0.00041 37.9 7.7 91 342-450 167-264 (347)
371 PRK07688 thiamine/molybdopteri 67.0 19 0.00042 38.9 7.8 74 342-420 23-122 (339)
372 TIGR02819 fdhA_non_GSH formald 66.9 16 0.00035 40.0 7.5 98 342-451 185-297 (393)
373 COG0686 Ald Alanine dehydrogen 66.8 26 0.00057 37.5 8.3 98 342-451 167-266 (371)
374 PF02826 2-Hacid_dh_C: D-isome 66.7 21 0.00046 34.5 7.5 109 341-472 34-143 (178)
375 PF00107 ADH_zinc_N: Zinc-bind 66.7 40 0.00087 30.0 8.8 94 357-467 3-104 (130)
376 PRK06128 oxidoreductase; Provi 66.6 61 0.0013 33.7 11.4 75 342-422 54-142 (300)
377 PRK13209 L-xylulose 5-phosphat 66.3 76 0.0017 32.7 12.0 166 8-196 8-189 (283)
378 PLN03154 putative allyl alcoho 66.2 55 0.0012 35.0 11.2 89 342-450 158-255 (348)
379 cd08291 ETR_like_1 2-enoyl thi 66.1 12 0.00025 39.4 5.9 91 344-452 144-241 (324)
380 cd08238 sorbose_phosphate_red 66.1 50 0.0011 36.3 11.1 99 342-450 175-285 (410)
381 PRK03562 glutathione-regulated 65.9 19 0.00041 42.2 8.0 66 343-420 400-470 (621)
382 COG2933 Predicted SAM-dependen 65.9 25 0.00054 36.7 7.8 69 341-423 210-279 (358)
383 cd08300 alcohol_DH_class_III c 65.8 19 0.00041 38.8 7.6 92 342-450 186-285 (368)
384 cd05284 arabinose_DH_like D-ar 65.6 20 0.00043 37.7 7.5 91 342-450 167-263 (340)
385 cd01492 Aos1_SUMO Ubiquitin ac 65.5 35 0.00075 33.8 8.8 34 343-379 21-54 (197)
386 cd08265 Zn_ADH3 Alcohol dehydr 65.3 48 0.001 35.9 10.7 94 342-451 203-305 (384)
387 cd05289 MDR_like_2 alcohol deh 65.2 44 0.00095 33.9 9.9 89 342-450 144-235 (309)
388 PRK05597 molybdopterin biosynt 65.1 19 0.00041 39.1 7.4 74 342-420 27-124 (355)
389 cd08255 2-desacetyl-2-hydroxye 65.0 51 0.0011 33.4 10.3 91 342-450 97-187 (277)
390 PRK08264 short chain dehydroge 65.0 22 0.00048 35.2 7.4 70 342-422 5-81 (238)
391 PRK06079 enoyl-(acyl carrier p 64.9 25 0.00055 35.5 7.9 74 342-422 6-91 (252)
392 PRK08328 hypothetical protein; 64.8 30 0.00064 35.2 8.3 35 342-379 26-60 (231)
393 PRK07454 short chain dehydroge 64.7 38 0.00082 33.6 9.1 74 342-421 5-90 (241)
394 cd08294 leukotriene_B4_DH_like 64.5 18 0.00039 37.7 7.0 90 342-450 143-238 (329)
395 cd08242 MDR_like Medium chain 64.2 80 0.0017 32.8 11.8 88 342-450 155-242 (319)
396 TIGR00518 alaDH alanine dehydr 64.2 26 0.00057 38.3 8.3 37 342-382 166-202 (370)
397 PLN02662 cinnamyl-alcohol dehy 64.1 26 0.00057 36.5 8.1 74 343-420 4-82 (322)
398 PRK06197 short chain dehydroge 64.1 35 0.00077 35.5 9.1 78 341-422 14-103 (306)
399 cd08233 butanediol_DH_like (2R 64.0 19 0.00042 38.2 7.2 92 342-451 172-270 (351)
400 COG2910 Putative NADH-flavin r 63.9 39 0.00086 33.6 8.4 65 345-422 2-70 (211)
401 PLN02668 indole-3-acetate carb 63.6 5.7 0.00012 43.7 3.0 19 343-361 64-82 (386)
402 PRK08324 short chain dehydroge 63.4 60 0.0013 38.4 11.7 74 342-422 421-506 (681)
403 PRK11524 putative methyltransf 63.3 6.7 0.00014 41.1 3.4 54 398-451 8-78 (284)
404 PRK14852 hypothetical protein; 63.3 25 0.00055 43.1 8.5 75 342-422 331-430 (989)
405 PRK10458 DNA cytosine methylas 63.2 21 0.00047 40.3 7.5 61 342-410 87-147 (467)
406 PLN02657 3,8-divinyl protochlo 63.2 17 0.00036 39.9 6.6 75 342-422 59-144 (390)
407 cd08301 alcohol_DH_plants Plan 63.1 69 0.0015 34.3 11.3 93 342-452 187-288 (369)
408 PRK07102 short chain dehydroge 63.1 35 0.00076 34.0 8.5 73 344-421 2-83 (243)
409 PRK08306 dipicolinate synthase 63.0 40 0.00086 35.7 9.2 86 342-450 151-238 (296)
410 cd08274 MDR9 Medium chain dehy 62.9 74 0.0016 33.4 11.4 89 342-450 177-270 (350)
411 cd08240 6_hydroxyhexanoate_dh_ 62.8 81 0.0018 33.3 11.7 91 342-450 175-271 (350)
412 PF03269 DUF268: Caenorhabditi 62.7 11 0.00023 36.6 4.3 104 343-465 2-117 (177)
413 PLN02214 cinnamoyl-CoA reducta 62.7 32 0.0007 36.7 8.6 73 342-420 9-87 (342)
414 cd01483 E1_enzyme_family Super 62.6 60 0.0013 29.9 9.4 32 345-379 1-32 (143)
415 PRK03659 glutathione-regulated 62.3 17 0.00037 42.4 6.8 65 344-420 401-470 (601)
416 PRK13699 putative methylase; P 62.3 7.1 0.00015 39.7 3.3 52 399-450 2-69 (227)
417 cd08293 PTGR2 Prostaglandin re 62.0 70 0.0015 33.6 11.0 90 344-451 156-252 (345)
418 cd08284 FDH_like_2 Glutathione 62.0 97 0.0021 32.5 12.1 90 342-450 167-263 (344)
419 cd08245 CAD Cinnamyl alcohol d 62.0 95 0.0021 32.3 11.9 90 342-450 162-253 (330)
420 PRK06125 short chain dehydroge 61.9 45 0.00097 33.6 9.1 76 342-422 6-89 (259)
421 PRK07984 enoyl-(acyl carrier p 61.7 33 0.00071 35.2 8.1 76 342-422 5-92 (262)
422 PRK05562 precorrin-2 dehydroge 61.3 27 0.00058 35.6 7.2 68 342-420 24-91 (223)
423 PRK06935 2-deoxy-D-gluconate 3 61.2 40 0.00087 33.9 8.6 74 342-421 14-98 (258)
424 PRK12826 3-ketoacyl-(acyl-carr 60.9 42 0.0009 33.3 8.6 75 342-422 5-91 (251)
425 PRK07523 gluconate 5-dehydroge 60.9 48 0.001 33.2 9.1 75 342-422 9-95 (255)
426 cd08289 MDR_yhfp_like Yhfp put 60.9 26 0.00056 36.4 7.3 88 343-450 147-240 (326)
427 PRK06603 enoyl-(acyl carrier p 60.8 39 0.00084 34.4 8.5 76 342-422 7-94 (260)
428 PF01008 IF-2B: Initiation fac 60.7 36 0.00078 35.4 8.3 73 342-420 107-182 (282)
429 PF01488 Shikimate_DH: Shikima 60.7 45 0.00098 30.7 8.1 72 341-422 10-83 (135)
430 PRK07063 short chain dehydroge 60.6 46 0.001 33.5 9.0 76 342-421 6-93 (260)
431 CHL00194 ycf39 Ycf39; Provisio 60.4 27 0.00058 36.8 7.4 65 345-420 2-70 (317)
432 cd01075 NAD_bind_Leu_Phe_Val_D 60.4 39 0.00084 33.5 8.1 39 341-383 26-64 (200)
433 KOG2671|consensus 60.3 8.2 0.00018 41.6 3.3 77 341-423 207-293 (421)
434 PRK08589 short chain dehydroge 60.2 44 0.00096 34.1 8.8 75 342-422 5-90 (272)
435 COG3510 CmcI Cephalosporin hyd 60.2 55 0.0012 32.7 8.7 61 343-411 70-132 (237)
436 PRK07666 fabG 3-ketoacyl-(acyl 60.2 49 0.0011 32.7 8.9 75 342-422 6-92 (239)
437 PRK09496 trkA potassium transp 60.1 42 0.0009 37.2 9.2 68 343-420 231-303 (453)
438 PRK07677 short chain dehydroge 60.1 46 0.001 33.4 8.8 73 344-422 2-86 (252)
439 TIGR03325 BphB_TodD cis-2,3-di 60.0 36 0.00079 34.4 8.1 73 342-422 4-87 (262)
440 PRK10669 putative cation:proto 60.0 17 0.00038 41.8 6.3 65 344-420 418-487 (558)
441 PRK08085 gluconate 5-dehydroge 59.8 45 0.00098 33.4 8.7 75 342-422 8-94 (254)
442 cd08296 CAD_like Cinnamyl alco 59.6 37 0.00081 35.7 8.3 90 342-450 163-256 (333)
443 PF00106 adh_short: short chai 59.5 45 0.00097 30.9 8.0 73 344-421 1-87 (167)
444 TIGR02354 thiF_fam2 thiamine b 59.4 72 0.0016 31.7 9.8 34 343-379 21-54 (200)
445 PRK12743 oxidoreductase; Provi 59.4 41 0.0009 33.9 8.3 72 344-421 3-87 (256)
446 PRK08594 enoyl-(acyl carrier p 58.9 36 0.00077 34.7 7.8 77 342-422 6-95 (257)
447 PRK08251 short chain dehydroge 58.7 55 0.0012 32.5 9.0 74 344-421 3-88 (248)
448 KOG0725|consensus 58.4 1.7E+02 0.0036 30.6 12.7 78 341-422 6-97 (270)
449 cd05279 Zn_ADH1 Liver alcohol 58.3 42 0.00091 36.0 8.6 94 342-451 183-283 (365)
450 cd05281 TDH Threonine dehydrog 58.2 46 0.001 35.1 8.8 94 342-450 163-259 (341)
451 PRK07231 fabG 3-ketoacyl-(acyl 58.2 55 0.0012 32.4 9.0 74 342-422 4-89 (251)
452 KOG2015|consensus 58.1 32 0.00069 36.9 7.1 75 344-422 41-137 (422)
453 COG0569 TrkA K+ transport syst 58.1 42 0.00092 34.0 8.0 65 345-420 2-72 (225)
454 PRK06200 2,3-dihydroxy-2,3-dih 58.0 46 0.00099 33.6 8.4 73 342-422 5-88 (263)
455 PLN02986 cinnamyl-alcohol dehy 58.0 43 0.00092 35.1 8.4 75 342-420 4-83 (322)
456 TIGR00692 tdh L-threonine 3-de 57.9 31 0.00067 36.4 7.4 94 342-450 161-258 (340)
457 cd08243 quinone_oxidoreductase 57.8 30 0.00065 35.6 7.1 90 342-450 142-235 (320)
458 PF13460 NAD_binding_10: NADH( 57.6 31 0.00068 32.7 6.7 64 346-422 1-68 (183)
459 PRK12384 sorbitol-6-phosphate 57.6 53 0.0012 32.9 8.8 73 344-421 3-88 (259)
460 COG0287 TyrA Prephenate dehydr 57.4 39 0.00084 35.6 7.8 102 344-462 4-106 (279)
461 PRK07814 short chain dehydroge 57.3 57 0.0012 33.0 9.0 74 342-421 9-94 (263)
462 PRK05867 short chain dehydroge 57.2 48 0.001 33.2 8.4 75 342-422 8-94 (253)
463 PRK09242 tropinone reductase; 57.1 55 0.0012 32.9 8.8 77 342-422 8-96 (257)
464 PRK07062 short chain dehydroge 56.6 59 0.0013 32.8 9.0 76 342-421 7-94 (265)
465 PRK08339 short chain dehydroge 56.5 63 0.0014 32.9 9.2 75 342-421 7-92 (263)
466 PRK06181 short chain dehydroge 56.3 58 0.0013 32.8 8.8 73 344-422 2-86 (263)
467 cd08295 double_bond_reductase_ 56.2 90 0.002 32.9 10.6 90 342-450 151-248 (338)
468 PLN00198 anthocyanidin reducta 56.1 42 0.00091 35.5 8.1 75 341-420 7-86 (338)
469 cd08279 Zn_ADH_class_III Class 55.8 37 0.00079 36.4 7.6 91 342-450 182-279 (363)
470 PRK08690 enoyl-(acyl carrier p 55.8 49 0.0011 33.6 8.2 76 342-422 5-92 (261)
471 PRK07889 enoyl-(acyl carrier p 55.8 40 0.00087 34.2 7.6 76 342-422 6-93 (256)
472 PRK09186 flagellin modificatio 55.8 59 0.0013 32.5 8.7 77 342-422 3-91 (256)
473 PLN02514 cinnamyl-alcohol dehy 55.7 82 0.0018 33.7 10.3 93 342-452 180-274 (357)
474 TIGR01470 cysG_Nterm siroheme 55.7 38 0.00083 33.8 7.2 68 342-420 8-75 (205)
475 cd08246 crotonyl_coA_red croto 55.7 40 0.00087 36.5 8.0 38 342-382 193-230 (393)
476 cd08236 sugar_DH NAD(P)-depend 55.7 41 0.00089 35.4 7.9 92 342-451 159-256 (343)
477 PRK07904 short chain dehydroge 55.3 52 0.0011 33.3 8.3 75 342-421 7-94 (253)
478 KOG0821|consensus 55.3 16 0.00034 37.2 4.1 62 342-410 50-111 (326)
479 PRK06500 short chain dehydroge 55.2 55 0.0012 32.5 8.3 72 342-421 5-87 (249)
480 PRK06124 gluconate 5-dehydroge 55.0 67 0.0015 32.1 9.0 75 341-421 9-95 (256)
481 PRK02308 uvsE putative UV dama 55.0 17 0.00037 38.7 4.7 45 76-121 106-153 (303)
482 PRK09260 3-hydroxybutyryl-CoA 54.9 34 0.00073 35.7 7.0 99 344-452 2-116 (288)
483 cd01485 E1-1_like Ubiquitin ac 54.9 40 0.00087 33.4 7.1 34 343-379 19-52 (198)
484 PRK06949 short chain dehydroge 54.5 74 0.0016 31.7 9.2 75 342-422 8-94 (258)
485 PRK05690 molybdopterin biosynt 54.4 55 0.0012 33.6 8.3 35 342-379 31-65 (245)
486 PRK10083 putative oxidoreducta 54.3 82 0.0018 33.0 9.9 95 342-451 160-257 (339)
487 PRK09496 trkA potassium transp 54.3 92 0.002 34.4 10.7 65 345-420 2-71 (453)
488 cd08267 MDR1 Medium chain dehy 54.2 93 0.002 31.8 10.1 35 342-379 143-177 (319)
489 TIGR03589 PseB UDP-N-acetylglu 54.2 44 0.00095 35.4 7.8 74 342-420 3-80 (324)
490 PRK06718 precorrin-2 dehydroge 54.2 43 0.00094 33.3 7.3 68 342-420 9-76 (202)
491 PRK09072 short chain dehydroge 53.9 70 0.0015 32.3 9.0 73 342-421 4-87 (263)
492 PRK07819 3-hydroxybutyryl-CoA 53.8 41 0.00088 35.3 7.3 100 344-455 6-123 (286)
493 PLN02650 dihydroflavonol-4-red 53.8 55 0.0012 34.9 8.5 74 343-420 5-83 (351)
494 PLN02702 L-idonate 5-dehydroge 53.8 1.4E+02 0.0031 31.8 11.8 93 342-450 181-282 (364)
495 PF06460 NSP13: Coronavirus NS 53.7 55 0.0012 34.2 7.8 94 342-450 61-166 (299)
496 cd08287 FDH_like_ADH3 formalde 53.7 51 0.0011 34.7 8.2 91 342-450 168-265 (345)
497 cd01065 NAD_bind_Shikimate_DH 53.7 1.3E+02 0.0028 27.7 10.0 73 342-424 18-91 (155)
498 PRK08993 2-deoxy-D-gluconate 3 53.5 54 0.0012 33.0 8.0 73 342-421 9-92 (253)
499 PRK07831 short chain dehydroge 53.4 70 0.0015 32.3 8.9 77 342-422 16-105 (262)
500 cd08235 iditol_2_DH_like L-idi 53.3 41 0.00089 35.3 7.4 91 342-450 165-262 (343)
No 1
>KOG0822|consensus
Probab=100.00 E-value=5.2e-155 Score=1227.24 Aligned_cols=605 Identities=43% Similarity=0.737 Sum_probs=556.1
Q ss_pred CeeEEeecCCCCCCHHHHHHHHH-hCCccEEEecCCCcccccccccccccccCCCCccccc---CCCCCcCccceEEEec
Q psy17734 6 IAVSVGLEYPTCYNIQSQIESLA-AECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQS---LSSICPQWLKLIVCDI 81 (626)
Q Consensus 6 ~~~~~g~~~~~~~~~~~~~~~~~-~~~~df~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~v~~~ 81 (626)
++.++|....+.+++...++... ..|||||+.|+.+|.+|.++... ...++.+.|+++| |.+ ++|++.|||++
T Consensus 19 nSr~~~~~~~~s~e~a~~l~~~v~~~~f~fv~~P~f~~~~r~~~~~~-~~~~~~~~~~~~~dv~l~~--~dw~s~vVGk~ 95 (649)
T KOG0822|consen 19 NSRFLGNVSSCSPEVASNLDYNVATIGFNFVVGPVFGPFQRQNWVPE-QIPENQLQPICIPDVKLSG--SDWNSKVVGKL 95 (649)
T ss_pred cccccccccccCchhhhhccceeeccceeeEeecccCchhhhccccc-CCCcCCCCCccchhheeCc--ccCcceeEEee
Confidence 34567888888888888888444 88999999999999999987544 2345567788888 888 99999999999
Q ss_pred CCcccccCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEEcCCCCChhhHHHHHHHHhccCCceEEEEEeeccCCCc-ccc
Q psy17734 82 QCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDFCNFARTLYAHSEKNMSYTAWIKVPIRPVDT-SML 160 (626)
Q Consensus 82 s~w~~~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~~~~~~~~~~~ar~~~~~~~~~~~~~~~i~~p~~~~~~-~~~ 160 (626)
|+|| ||||+||.+|+.|+++|++|++||+|||++++++++++++..|+||.+.+...+..+-. ++||...|.. ...
T Consensus 96 S~Wi-~lDS~d~~ir~~seevll~E~~ya~ylgl~~~~l~l~~~d~~nla~i~~~~~~t~~ns~--~~v~~a~p~i~~a~ 172 (649)
T KOG0822|consen 96 SSWI-ELDSEDPKIRDLSEEVLLKELSYARYLGLQKLILALPRRDNTNLARILQNIIRTLQNSF--MRVPFAAPAIEIAI 172 (649)
T ss_pred cccc-cCCCCChHHHHhHHHHHHHHHHHHHHcCccceecCCCCCCchhHHHHHHHHHHhccCce--eEeeecchhhhhcc
Confidence 9999 99999999999999999999999999999999999988899999999998887763322 7888876511 100
Q ss_pred ccCCCCCCccchHHHHHHHHHhcCCCCceEEEEEec-CCCCCHhHHhHhhcccceEEEecccccccCCCCCccCCHhHHH
Q psy17734 161 RQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEIN-GDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLAN 239 (626)
Q Consensus 161 ~~~~~~~~~~~~w~~W~~~r~~c~~~~~l~v~L~l~-~~~p~~~~~~rW~~EPv~~~~i~~~~f~~n~~g~pvL~k~~q~ 239 (626)
....++....++|+|||+||++|+||++|+|||+|+ +++|++++++||+||||+|++|++++|++|++|||||+|+||+
T Consensus 173 ~~~~~e~e~~dtW~~Wn~~R~~C~y~~~l~VaLel~~a~~Ps~~lv~RWlaEPi~a~iisss~FvsN~~gypvL~k~~q~ 252 (649)
T KOG0822|consen 173 DSPLEEYEGNDTWELWNTFRKLCEYHPRLKVALELPRADLPSEELVDRWLAEPIEAIIISSSIFVSNRNGYPVLSKFHQN 252 (649)
T ss_pred cccccccccccHHHHHHHHHHHhCcCCceEEEEecCcccCCcHHHHhhhhccchhheeeecceeeeCCCCCccccHHHHH
Confidence 011111222689999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcceEEEEcccCC-------------CChhhHHHHHHHHHhcCCCCChhhhhhhchhhhhcCCCcchhhcchh
Q psy17734 240 FIKKILEKNLQVVIQGVNRH-------------QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFPLQPLANDLSS 306 (626)
Q Consensus 240 ~i~~~~~~~~~~~l~~~~~~-------------~~~~~y~~yl~~l~~~~~~~~~~~~~~~~y~d~lq~PLqpl~dnL~s 306 (626)
+|.+|+++++++||.|.+.+ .++.+|++|++||.+++++....+.+..+|+|+||.|||||+|||++
T Consensus 253 li~~f~~~~a~~iI~~n~~~~~~~~~s~~~~ek~~l~~Yl~YvnyL~~~~~~~n~~eh~~~~Y~d~Lq~PLQPLsdNLe~ 332 (649)
T KOG0822|consen 253 LIAHFLKVNAQIIILGNPLDVILHGMSKYANEKKGLRAYLDYVNYLSQKGPPVNNSEHQLLSYKDYLQAPLQPLSDNLEN 332 (649)
T ss_pred HHHHHHhccccEEEeCCCcchhhccccccccchhhhHHHHHHHHHHhcCCCCCChHHHHHHhHHhhhhCCCchhhhhhhh
Confidence 99999999999999887644 35889999999999999999999999999999999999999999999
Q ss_pred hHHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH
Q psy17734 307 FTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL 386 (626)
Q Consensus 307 ~tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~ 386 (626)
.||++||+|++||++|++||.+|+.|++++..... ..+|+++|+|||||+.++++|++...+++++|||||||+|++++
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~-~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL 411 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAILKALLDRVPDESAKT-TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTL 411 (649)
T ss_pred hhhhhhhccchHHHHHHHHHHHHHHhhCcccccCc-eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhh
Confidence 99999999999999999999999999988755544 67899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCcEEEEEecccccCCC-CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccChH
Q psy17734 387 KYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHK 465 (626)
Q Consensus 387 ~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~ 465 (626)
++++...|+++ |++|.+|||+|..| +++||+||||||||||||++|||||+++++|||+||+||++||+|++||++++
T Consensus 412 ~~~n~~~W~~~-Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~ 490 (649)
T KOG0822|consen 412 QNRNFECWDNR-VTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIPSSYTSYIAPIMSPK 490 (649)
T ss_pred hhhchhhhcCe-eEEEeccccccCCchhhccchHHHhhccccCccCCHHHHHHHHhhcCCCceEccchhhhhhcccccHH
Confidence 99999999998 99999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhccccCCCcccCCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCceeeEEEEEEeeCceEEEEEEEEEEE
Q psy17734 466 LFTQVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTF 545 (626)
Q Consensus 466 l~~~~~~~~~~fd~~~~~~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r~~~~~f~i~~~g~~hGf~~wFd~~ 545 (626)
+|+++++... .++||+||||.+++++.|+++|+||+|.||+.+.+.+|+|++.++|+++++|.+|||+||||++
T Consensus 491 l~q~v~a~~~------~~~fe~~YVV~l~~~~~La~~q~vftF~HPN~~~nv~N~R~~s~eF~~~~~~~lHGFaGYFd~~ 564 (649)
T KOG0822|consen 491 LYQEVKATND------PNAFEAPYVVLLHNYCILAEPQPVFTFEHPNFDFNVDNSRSKSVEFKVKSNGVLHGFAGYFDAV 564 (649)
T ss_pred HHHHHHhcCC------ccccccceEEEecceeecCCCCceeEEecCCcccccccccceeEEEecCCCceEeecchhhhhh
Confidence 9999997654 3689999999999999999999999999999988999999999999999999999999999999
Q ss_pred ecCceEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEecCceEEEEEEEe------cCCCCceecCCCce
Q psy17734 546 LYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVKVWYEWLVT------KPTPSPIYNLDGRS 619 (626)
Q Consensus 546 L~~~v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~~~VWyEW~~~------~p~~~~i~n~~G~~ 619 (626)
||++|.|||.|.||||||+||||++|||++|+.|.+|++|+++||||+|+.||||||+++ +|..++|||++||+
T Consensus 565 LYkdI~LSI~P~T~TP~MfSWFPi~fPlk~Pi~v~e~~~lsv~~wR~~d~~kVWYEW~v~~~~~l~~~~~s~iHN~~Grs 644 (649)
T KOG0822|consen 565 LYKDIFLSIEPNTHTPGMFSWFPIFFPLKQPITVREGSTLSVHFWRCVDSTKVWYEWSVESFIYLMKPSSSEIHNPNGRS 644 (649)
T ss_pred hhheeeEeeccCCCCCCceeeeeeeeeccCceEeCCCCeEEEEEEEEeCCceeEEEEEeeeeecccCCCcccccCCCCce
Confidence 999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred EEeee
Q psy17734 620 YKMMK 624 (626)
Q Consensus 620 ~~i~l 624 (626)
|+|+|
T Consensus 645 y~~~l 649 (649)
T KOG0822|consen 645 YSMRL 649 (649)
T ss_pred eecCC
Confidence 99986
No 2
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=100.00 E-value=1.2e-116 Score=963.66 Aligned_cols=431 Identities=48% Similarity=0.865 Sum_probs=335.0
Q ss_pred ccchHHHHHHHHHhcCCCCceEEEEEecCCCCCHhHHhHhhcccceEEEecccccccCCCCCccCCHhHHHHHHHHHHhc
Q psy17734 169 SQDTWRWWNMFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLANFIKKILEKN 248 (626)
Q Consensus 169 ~~~~w~~W~~~r~~c~~~~~l~v~L~l~~~~p~~~~~~rW~~EPv~~~~i~~~~f~~n~~g~pvL~k~~q~~i~~~~~~~ 248 (626)
+.++|++||+||++|+||++|+|+|+||+++|+.++++||+||||+|++|++++|+||++|||||+|+||+||++|+|.+
T Consensus 2 ~~~~W~~W~~~r~~c~~~~~l~v~L~l~~~lp~~~~~~rW~~EPv~~l~i~~s~F~tN~~g~pvL~k~~q~~~~~~~~~~ 81 (448)
T PF05185_consen 2 PLDTWEWWNTIRSLCNYHPRLGVALELPRDLPSEEVLNRWLGEPVKCLIIPTSIFLTNKKGYPVLSKAHQSLLRRFFRLN 81 (448)
T ss_dssp S--HHHHHHHHHHHT---TTEEEEEEE-SS--GGHHHCGGGGTTEEEEEEES-----STTT-----HHHHHHHHHH--ST
T ss_pred CCCHHHHHHHHHHHhCCCCceEEEEEcCCCCCCHHHHHHHhcCCccEEEEcHHHhhcCcCCCccCCHHHHHHHHHHHHhc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred -ceEEEEccc--------CC--CChhhHHHHHHHHHhcCCCCChhhhhhhchhhhhcCCCcchhhcchhhHHHHhhCCHH
Q psy17734 249 -LQVVIQGVN--------RH--QSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFPLQPLANDLSSFTYEVFEKDPI 317 (626)
Q Consensus 249 -~~~~l~~~~--------~~--~~~~~y~~yl~~l~~~~~~~~~~~~~~~~y~d~lq~PLqpl~dnL~s~tYe~fe~D~~ 317 (626)
.++++.|.. ++ ++...|++||+||++++++.+..+.|+.+|+|+||.|||||+|||+|.||+.||+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~l~~~~~~~~~~~~~~~~~~d~Lq~PLqPl~dnL~s~tYe~fE~D~v 161 (448)
T PF05185_consen 82 GVQIILSGELCPILHGMEKHSDGDKGGYLQYLRYLYKKQPPLDPQEKFESGYEDYLQAPLQPLMDNLESQTYEVFEKDPV 161 (448)
T ss_dssp T-EEEEE--S-SST--TTTHHHHHHHHHHTTT-----------------------EE----TTTS---HHHHHHHCC-HH
T ss_pred CCceeecccccccccccccccccchHHHHHHHHHHHhcCCCCChhhhhhhhchhhccCCCCCchhhhccccHhhHhcCHH
Confidence 566777532 11 5667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHH-HHcCCCC
Q psy17734 318 KYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYK-KEEQWAQ 396 (626)
Q Consensus 318 ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~-~~n~~~~ 396 (626)
||++|++||.+|+.|+........++++|||||||||+|++++++|+++.+.+++|||||+|++|..+++.+ +.|+|++
T Consensus 162 KY~~Ye~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~ 241 (448)
T PF05185_consen 162 KYDQYERAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGD 241 (448)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCC
Confidence 999999999999999876543333578999999999999999999998777668999999999999887665 8899999
Q ss_pred CcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHHHHhhhccc
Q psy17734 397 SDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIK 476 (626)
Q Consensus 397 ~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~~~~~~~~ 476 (626)
+ |++|++|||+++.|+|+|||||||||+||+||++||||++++|+|||||++||++||+|++||+++++|+++...+.
T Consensus 242 ~-V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~~~~~~~- 319 (448)
T PF05185_consen 242 K-VTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQEVRNWWN- 319 (448)
T ss_dssp T-EEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHHHHHHHG-
T ss_pred e-EEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHHHHhhcc-
Confidence 8 99999999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred cCCCcccCCCCcEEEEecCccccCCC-eeEEEeeCCCCCC--CCCCceeeEEEEEEeeCceEEEEEEEEEEEecCceEEe
Q psy17734 477 EHQHPLYRFEQPYVVYQRNKYNIAPP-QPCFTFVHPSEDK--DPDNSRYTKATFIAEQDSVLHGIAGYFDTFLYKDINLS 553 (626)
Q Consensus 477 fd~~~~~~~e~P~vv~l~~~~~Ls~p-~~~~tFd~p~~~~--~~~~~r~~~~~f~i~~~g~~hGf~~wFd~~L~~~v~lS 553 (626)
...+++|||+.+.+...|+++ +++|+|+||+... ..++.|+..++|+++++|++|||+|||+++||++|.||
T Consensus 320 -----~~~~e~pyvv~~~~~~~Ls~~~~~~~~F~hp~~~~~~~~~~~r~~~~~F~i~~~g~vhGfagwFd~~Ly~~V~LS 394 (448)
T PF05185_consen 320 -----PSSFETPYVVHLSPFELLSDPPQPVFTFDHPNPDLPENSDNSRSSELEFKIKRDGVVHGFAGWFDAVLYGDVVLS 394 (448)
T ss_dssp -----HHHHTSSEEE--GGGGBCSCCEEEEEETTTCGGG-GGGGGSEEEEEEEEEBSSSEEEEEEEEEEEEEEECSEEEE
T ss_pred -----hhhcCCcEEEEccchhhhcCCceEEEEeccCCccccchhhhheeeeEEEeeCCCcEEEEEEEEEEEEeeCCeeee
Confidence 257999999999999999999 9999999998752 46788999999999999999999999999999999999
Q ss_pred cCCCC-CCCCCccceeEEEecCCceeeCCCCEEEEEEEEEecCceEEEEEEEec
Q psy17734 554 IHPDT-LSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVKVWYEWLVTK 606 (626)
Q Consensus 554 t~P~t-~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~~~VWyEW~~~~ 606 (626)
|+|.+ |+++|+||+|++|||++|+.|++|++|+++|||++|++||||||++++
T Consensus 395 t~P~~~~s~~~tsW~q~~fpL~~Pl~V~~g~~I~~~i~R~~~~~~vWYEW~v~s 448 (448)
T PF05185_consen 395 TSPSSAHSPPMTSWFQIFFPLEEPLYVKAGDEISVHIWRKTDDRKVWYEWSVES 448 (448)
T ss_dssp SSTTS---TT--TTEEEEEEEEEEEEE-TT-EEEEEEEEECCSTCEEEEEEEEE
T ss_pred cCCCcCCCCCCCeEeEEEEEecCcEEECCCCEEEEEEEEEcCCCcEEEEEEEeC
Confidence 99998 999999999999999999999999999999999999999999999974
No 3
>PTZ00357 methyltransferase; Provisional
Probab=100.00 E-value=6.8e-82 Score=682.11 Aligned_cols=381 Identities=32% Similarity=0.563 Sum_probs=324.1
Q ss_pred HHHHHHHHHHhcceEEEEcccCCCChhhHHHHHHHHHhcCCCCChhhhhhhchhhhhcCCCcchhhcchhhHHHHhhCCH
Q psy17734 237 LANFIKKILEKNLQVVIQGVNRHQSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFPLQPLANDLSSFTYEVFEKDP 316 (626)
Q Consensus 237 ~q~~i~~~~~~~~~~~l~~~~~~~~~~~y~~yl~~l~~~~~~~~~~~~~~~~y~d~lq~PLqpl~dnL~s~tYe~fe~D~ 316 (626)
.-.||.+++|+++..+.. ....+...|++||++|..++|+.+.++ +|+|+||.|||||+|||+|.|||+||+|+
T Consensus 576 ~~tfivellrrra~pvf~--~~~~d~~p~L~YL~~l~~~qP~r~~~e----sYeD~LQ~PLQPLsDNLES~TYEVFEKDp 649 (1072)
T PTZ00357 576 ALTFIVELLRRRAMPVFD--RTFFDQYPLLNYLHFKGVEEPTRDVFA----SFEGQLQLPLQPLSHHLSSGVYEVFERDA 649 (1072)
T ss_pred HHHHHHHHHHhhcccccc--cccCCccHHHHHHHHHhccCCCcchhh----hhhhhhcccCCchhhccchhhHHHHcCCc
Confidence 346788888888776665 223577889999999999999988876 89999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCC-------------------------cCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCcc
Q psy17734 317 IKYIRYQEAVQQALLDRVSPE-------------------------QADTVVTTIMVVGAGRGPLVTASLNAAKEANRKV 371 (626)
Q Consensus 317 ~ry~~Y~~AI~~al~d~~~~~-------------------------~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~ 371 (626)
+||++|++||.+++.++.... ..+....+|+++|||||||+.++++|++..|.++
T Consensus 650 VKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAak~~gvkV 729 (1072)
T PTZ00357 650 RKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSALGVRL 729 (1072)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHHHHcCCcE
Confidence 999999999999998754210 0111235799999999999999999999999999
Q ss_pred EEEEEeCCHHH-HHHHHH-HHHcCC-------CCCcEEEEEecccccCCCC------------CccEEEeccccccCCCC
Q psy17734 372 RVYAVEKNMSA-VVGLKY-KKEEQW-------AQSDVTIVSEDMRTWNAPE------------KADIMVSELLGSFGDNE 430 (626)
Q Consensus 372 ~V~AVE~np~a-~~a~~~-~~~n~~-------~~~nV~vi~~D~~~~~~p~------------k~DiIVSEllgsfg~~E 430 (626)
+||||||||++ +.+++. .+.+.| +++ |++|++|||+|..++ ++|||||||||||||||
T Consensus 730 rIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~-VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNE 808 (1072)
T PTZ00357 730 RIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHT-LEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGDNE 808 (1072)
T ss_pred EEEEEecCcchHHHHHHHHhcccccccccccCCCe-EEEEeCcccccccccccccccccccccccceehHhhhccccccc
Confidence 99999999654 444443 345688 456 999999999997543 89999999999999999
Q ss_pred CcHHHHHHHHHhccc----Cc-------EEEeccceeeEEeccChHhHHHHhhhccc-c-------CCCcccCCCCcEEE
Q psy17734 431 LSPECLYAAQKYLKE----DG-------ISIPYNYTSYIAPIMSHKLFTQVKSSMIK-E-------HQHPLYRFEQPYVV 491 (626)
Q Consensus 431 l~pe~L~~~~r~Lkp----gG-------i~IP~~~t~y~api~s~~l~~~~~~~~~~-f-------d~~~~~~~e~P~vv 491 (626)
++||||++++++||+ +| ++||++||+|++||+++++|+++...... + .......+++|||+
T Consensus 809 LSPECLDGaQrfLKdiqhsdGIl~~ph~ISIPqSYTSYIAPISSpKLya~V~~~~~~gltvP~p~c~~~haa~fet~YVV 888 (1072)
T PTZ00357 809 LSPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLMSATFDAAVTEAAVKGLTVPPPGCHDHHAALNHTLLVT 888 (1072)
T ss_pred CCHHHHHHHHHhhhhhccccccccCCcceecchhhhhhccccccHHHHHHHHHhhhcccccCCccccccchhhcccceEE
Confidence 999999999999986 55 59999999999999999999997642111 0 00112458899999
Q ss_pred EecCccccCCCeeEEEeeCCCCCC----------------CCCCceeeEEEEEEeeCceEEEEEEEEEEEecCc-----e
Q psy17734 492 YQRNKYNIAPPQPCFTFVHPSEDK----------------DPDNSRYTKATFIAEQDSVLHGIAGYFDTFLYKD-----I 550 (626)
Q Consensus 492 ~l~~~~~Ls~p~~~~tFd~p~~~~----------------~~~~~r~~~~~f~i~~~g~~hGf~~wFd~~L~~~-----v 550 (626)
.++++..|++||+||+|.||+.+. +.+|+|++.++|++..+|+||||+|||+++||++ |
T Consensus 889 ~L~s~~~La~PQPcFTFeHPn~~~s~n~y~~~~g~~~~~~~i~N~Rya~L~F~v~~d~vlHGFAGYFdAvLYkDVt~~~V 968 (1072)
T PTZ00357 889 NLSRAVTLAPPQPCWTFEHRFHGGSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFSAVLYQSATAPAT 968 (1072)
T ss_pred EecceeecCCCcceeEEECCCcccccccccccccccccccccccceeEEEEEecCCCcceeeeeeEEEEEeecCCCccce
Confidence 999999999999999999998752 3578999999999999999999999999999999 6
Q ss_pred EEecCCCCCCCCCccceeEEEecC---CceeeCCCC---------EEEEEEEEEe--cCceEEEEEEEe---------cC
Q psy17734 551 NLSIHPDTLSPGLISWFPVLFPIH---EPIQLKTND---------EIEVHFWRLC--DNVKVWYEWLVT---------KP 607 (626)
Q Consensus 551 ~lSt~P~t~s~~m~sW~q~~fpL~---~Pi~V~~Gd---------~i~v~~~R~~--d~~~VWyEW~~~---------~p 607 (626)
.|||.|.+||++|+||||+||||+ ++..++.|+ .|.+++.|++ +.+||||||+++ +|
T Consensus 969 ~LSI~P~ThTpgMfSWFPIFFPLeP~~~~e~~~~gq~~~~~~~~~~i~~~l~Rr~~~~e~rVwYew~v~~~~~~~~~~~~ 1048 (1072)
T PTZ00357 969 IIATAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAEQRVWYEWSVTYGDAAVERQSP 1048 (1072)
T ss_pred EeecCCCCCCCCccceeeeEEecCccccceEeeccccccccccceeEEEeeeeccccccceEEEEEEEeechhhhhhcCC
Confidence 799999999999999999999998 777788887 8999999999 678999999996 34
Q ss_pred CCC-------ceecCCCceEEeee
Q psy17734 608 TPS-------PIYNLDGRSYKMMK 624 (626)
Q Consensus 608 ~~~-------~i~n~~G~~~~i~l 624 (626)
.++ -+||.||+..+|.|
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~ 1072 (1072)
T PTZ00357 1049 STSHDASAAPLVHNKNGWAASMLL 1072 (1072)
T ss_pred CcccCcccCceeecCcchhhhhcC
Confidence 433 48999999998864
No 4
>KOG1499|consensus
Probab=100.00 E-value=2.1e-45 Score=380.57 Aligned_cols=270 Identities=24% Similarity=0.284 Sum_probs=244.1
Q ss_pred hHHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH
Q psy17734 307 FTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL 386 (626)
Q Consensus 307 ~tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~ 386 (626)
..++.|++|.+|..+|+.+|.++-. .+++++|||||||||.|++++++||+ .+|+|||.+..|..+.
T Consensus 33 ~iheeML~D~VRt~aYr~~i~~n~~--------lf~dK~VlDVGcGtGILS~F~akAGA-----~~V~aVe~S~ia~~a~ 99 (346)
T KOG1499|consen 33 GIHEEMLKDSVRTLAYRNAILQNKH--------LFKDKTVLDVGCGTGILSMFAAKAGA-----RKVYAVEASSIADFAR 99 (346)
T ss_pred HHHHHHHhhhhhHHHHHHHHhcchh--------hcCCCEEEEcCCCccHHHHHHHHhCc-----ceEEEEechHHHHHHH
Confidence 4678999999999999999988754 24789999999999999998888876 5999999999999999
Q ss_pred HHHHHcCCCCCcEEEEEecccccCCC-CCccEEEeccccccCCCCCc-HHHHHHHHHhcccCcEEEeccceeeEEeccCh
Q psy17734 387 KYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFGDNELS-PECLYAAQKYLKEDGISIPYNYTSYIAPIMSH 464 (626)
Q Consensus 387 ~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~-pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~ 464 (626)
+.++.|++++. |++++|.++++.+| +|+|+|||||||+|+..|.| .++|.++.++|+|||.++|+.+++|++||++.
T Consensus 100 ~iv~~N~~~~i-i~vi~gkvEdi~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~ 178 (346)
T KOG1499|consen 100 KIVKDNGLEDV-ITVIKGKVEDIELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDD 178 (346)
T ss_pred HHHHhcCccce-EEEeecceEEEecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCc
Confidence 99999999998 99999999999999 99999999999999999997 88999999999999999999999999999999
Q ss_pred HhHHHHhhhccc---cCCCcc--cCCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCceeeEEEEEEeeCceEEEEE
Q psy17734 465 KLFTQVKSSMIK---EHQHPL--YRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIA 539 (626)
Q Consensus 465 ~l~~~~~~~~~~---fd~~~~--~~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r~~~~~f~i~~~g~~hGf~ 539 (626)
.++.+..++|++ |||+.. .....|+|..+.+.+++++|+.+.+||..+. ..++.+....++++++++|.+|||+
T Consensus 179 ~~~~~~i~fW~~Vygfdms~~~~~~~~e~lv~vv~~~~l~t~~~~i~~~Dl~t~-~i~d~~F~s~f~l~v~r~~~i~g~v 257 (346)
T KOG1499|consen 179 SYKDDKIGFWDDVYGFDMSCIKKIAIKEPLVDVVDPEQLLTEPCLIKEFDLYTV-KIEDLSFTSPFKLKVTRNGYLHAFV 257 (346)
T ss_pred hhhhhhcCccccccccchhhhhhhhhcccceeccChhHhcccceeeEEeeeeee-eccceeeccceEEEEccCceEEEEE
Confidence 999988888876 788753 3457899999999999999999999998876 3456677889999999999999999
Q ss_pred EEEEEEecC-----ceEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEec
Q psy17734 540 GYFDTFLYK-----DINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCD 594 (626)
Q Consensus 540 ~wFd~~L~~-----~v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d 594 (626)
+|||+.|.+ .+.+||+|... .+||+|++|.|++|+.|++|+.|.+++....+
T Consensus 258 ~yFDv~F~~~~~~~~~~fST~P~~p---~THWKQtVfyl~~p~~v~~ge~i~g~it~~~~ 314 (346)
T KOG1499|consen 258 AYFDVEFTGCHGKKRLGFSTSPSSP---YTHWKQTVFYLENPLTVKEGEDITGTITMKPN 314 (346)
T ss_pred EEEEEeeccCCCCCcceeecCCCCC---CceeeeEEEEecCccceecCceEEEEEEEeeC
Confidence 999999974 48999999643 37899999999999999999999999986665
No 5
>KOG1500|consensus
Probab=100.00 E-value=7.2e-37 Score=310.79 Aligned_cols=263 Identities=25% Similarity=0.298 Sum_probs=217.2
Q ss_pred HHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHH
Q psy17734 310 EVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYK 389 (626)
Q Consensus 310 e~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~ 389 (626)
..|+.|-+|...|++||..+-.| +.+++|||+|||+|+|++++++|++ ++|||||.+++|..|++.+
T Consensus 153 QNMmQDYVRTgTY~~Ail~N~sD--------F~~kiVlDVGaGSGILS~FAaqAGA-----~~vYAvEAS~MAqyA~~Lv 219 (517)
T KOG1500|consen 153 QNMMQDYVRTGTYQRAILENHSD--------FQDKIVLDVGAGSGILSFFAAQAGA-----KKVYAVEASEMAQYARKLV 219 (517)
T ss_pred HHHHHHHHhhhHHHHHHHhcccc--------cCCcEEEEecCCccHHHHHHHHhCc-----ceEEEEehhHHHHHHHHHH
Confidence 35888999999999999988765 5789999999999999998888776 5999999999999999999
Q ss_pred HHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHHH
Q psy17734 390 KEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQ 469 (626)
Q Consensus 390 ~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~ 469 (626)
+.|.+.++ |++|.|.++++++|+|+|+||||+||+.+.||.|-|..-.++|+|||.|.|+|.-..+++||.++..||-+
T Consensus 220 ~~N~~~~r-ItVI~GKiEdieLPEk~DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E 298 (517)
T KOG1500|consen 220 ASNNLADR-ITVIPGKIEDIELPEKVDVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVE 298 (517)
T ss_pred hcCCccce-EEEccCccccccCchhccEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHH
Confidence 99999999 99999999999999999999999999999999986554444599999999999999999999999999987
Q ss_pred Hh---hhccc--c---CCCc------ccCCCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCce-eeEEEEEEeeCce
Q psy17734 470 VK---SSMIK--E---HQHP------LYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSR-YTKATFIAEQDSV 534 (626)
Q Consensus 470 ~~---~~~~~--f---d~~~------~~~~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r-~~~~~f~i~~~g~ 534 (626)
.. ++|-. | |.++ ...|.+|.|+.++..-+++.+.. .+.||.+. ..++..+ ...++|.+...|.
T Consensus 299 ~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~RilmA~sv~-h~~dF~~~-kEedlh~i~iPlkF~~~~~g~ 376 (517)
T KOG1500|consen 299 QFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILMAKSVF-HVIDFLNM-KEEDLHEIDIPLKFHALQCGR 376 (517)
T ss_pred HHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceeeccchH-hhhhhhhc-ccchheeecccceehhhhhcc
Confidence 54 34432 1 3322 34689999988877655554431 12333332 1233333 3578999999999
Q ss_pred EEEEEEEEEEEecCc---eEEecCCCCCCCCCccceeEEEecCCceeeCCCCEEEEEEEE
Q psy17734 535 LHGIAGYFDTFLYKD---INLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWR 591 (626)
Q Consensus 535 ~hGf~~wFd~~L~~~---v~lSt~P~t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R 591 (626)
+||+++|||+.|++. +.+||.|... .+||.|....|..|+.|++|++|++++--
T Consensus 377 iHGLAfWFDV~F~GS~~~~wlsTap~ap---ltHwyqvrCll~~Pi~v~aGq~ltGr~~L 433 (517)
T KOG1500|consen 377 IHGLAFWFDVLFDGSTVQVWLSTAPTAP---LTHWYQVRCLLSQPIFVKAGQTLTGRLLL 433 (517)
T ss_pred eeeeeeEEEEEeccceEEEccCCCCCCC---cccceeeeeeccCchhhhcCCeeeeeEEE
Confidence 999999999999985 5689988543 56799999999999999999999998753
No 6
>KOG1501|consensus
Probab=99.87 E-value=9.3e-22 Score=206.53 Aligned_cols=293 Identities=15% Similarity=0.107 Sum_probs=212.5
Q ss_pred chhhHHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC-HHH
Q psy17734 304 LSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN-MSA 382 (626)
Q Consensus 304 L~s~tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n-p~a 382 (626)
|....|..|++|..|+..|+.+|++++.+- .+..+.+...|||+|+|||.|++||++|++ -+|+|+|.- |++
T Consensus 30 lArSsy~DMl~D~dRNiky~~gi~~tIte~--kh~~~~gkv~vLdigtGTGLLSmMAvraga-----D~vtA~EvfkPM~ 102 (636)
T KOG1501|consen 30 LARSSYLDMLNDSDRNIKYRLGIEKTITEP--KHVLDIGKVFVLDIGTGTGLLSMMAVRAGA-----DSVTACEVFKPMV 102 (636)
T ss_pred HHHhhHHHHhhcccccHHHHHHHHHHhccc--ceeccCceEEEEEccCCccHHHHHHHHhcC-----CeEEeehhhchHH
Confidence 667789999999999999999999998751 112223445799999999999999888875 389999995 788
Q ss_pred HHHHHHHHHcCCCCCcEEEEEecccccCCC--CCccEEEeccccccCCCCC-cHHHHHHHHHhcccCcEEEeccceeeEE
Q psy17734 383 VVGLKYKKEEQWAQSDVTIVSEDMRTWNAP--EKADIMVSELLGSFGDNEL-SPECLYAAQKYLKEDGISIPYNYTSYIA 459 (626)
Q Consensus 383 ~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--~k~DiIVSEllgsfg~~El-~pe~L~~~~r~LkpgGi~IP~~~t~y~a 459 (626)
..+++...+|||.++ |++|+...+++..- .++||+|.|.+..-+..|+ +|..-.+..++++|+...+|.++|+|++
T Consensus 103 d~arkI~~kng~Sdk-I~vInkrStev~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~~VP~ratvY~q 181 (636)
T KOG1501|consen 103 DLARKIMHKNGMSDK-INVINKRSTEVKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCKTVPYRATVYCQ 181 (636)
T ss_pred HHHHHHHhcCCCccc-eeeeccccceeeecCcchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCeeccccceEEEE
Confidence 899999999999998 99999999998643 5799999999888777886 4777777788999999999999999999
Q ss_pred eccChHhHH--HHhhhccc-cCC------CcccCCCCcEEE-------EecCccccCCCeeEEEeeCCCCCCCCCCceee
Q psy17734 460 PIMSHKLFT--QVKSSMIK-EHQ------HPLYRFEQPYVV-------YQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYT 523 (626)
Q Consensus 460 pi~s~~l~~--~~~~~~~~-fd~------~~~~~~e~P~vv-------~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r~~ 523 (626)
||+|..+++ ++.+.... -|. .....+..|-|. .-+.++.||++-++|.||+|.... .......
T Consensus 182 lVES~~l~~~ndl~~~~~~ts~gv~~~p~~lesc~G~~sv~d~ql~~~~~~ef~~Ls~~~~~F~~df~~~~~-s~s~~~~ 260 (636)
T KOG1501|consen 182 LVESTFLCNLNDLRNNEAKTSDGVRLVPPGLESCFGIKSVQDSQLVDAIEKEFKLLSSEGTIFYSDFPRWID-SNSEIEE 260 (636)
T ss_pred EehhhhhhhhhccccccccccCCcccCCCccccCCCchhHHHHHHhhcchhhheeecCcceeEEeecchhhh-cchhhhh
Confidence 999998765 44433221 010 012334444332 234678899999999999995421 1111112
Q ss_pred EEEEEEeeCceEEEEEEEEEEEecC--ceEEecCCC-CCC-CC----CccceeEEEecCC--ceeeCCCCEEEEEEEEEe
Q psy17734 524 KATFIAEQDSVLHGIAGYFDTFLYK--DINLSIHPD-TLS-PG----LISWFPVLFPIHE--PIQLKTNDEIEVHFWRLC 593 (626)
Q Consensus 524 ~~~f~i~~~g~~hGf~~wFd~~L~~--~v~lSt~P~-t~s-~~----m~sW~q~~fpL~~--Pi~V~~Gd~i~v~~~R~~ 593 (626)
...+..-++|.+.....|||..++. .+.+...|- ++. ++ ..+|.|+..+.++ ...+..++..-.-+ -.|
T Consensus 261 ~r~~va~~Sg~~~~~l~wwdi~mD~~g~~f~~m~p~w~~~~~~~~~~~~~weq~c~y~~~~~~~~i~~~ss~~~v~-~~H 339 (636)
T KOG1501|consen 261 LRPPVAVHSGPLRSNLLWWDISMDQFGFSFLVMQPLWTGVTIGNSVFGLLWEQACPYPKEKKGNRIHNVSSLMTVF-SYH 339 (636)
T ss_pred hcCcccccccchhheeeeeeeeeccCcceEEEecceecCCChHHHHHHHHHHHhcCCChhhhcCceeeccceEEEe-eee
Confidence 4456677899999999999999984 577888883 222 21 2389999988873 23333332222112 245
Q ss_pred cCceEEEEEEEec
Q psy17734 594 DNVKVWYEWLVTK 606 (626)
Q Consensus 594 d~~~VWyEW~~~~ 606 (626)
+...+||-...+.
T Consensus 340 ~~l~i~~~~h~~~ 352 (636)
T KOG1501|consen 340 LWLYIYRTDHYHC 352 (636)
T ss_pred eeeEEeeeeeecc
Confidence 6667777666654
No 7
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=99.63 E-value=2.6e-15 Score=143.35 Aligned_cols=133 Identities=23% Similarity=0.275 Sum_probs=114.9
Q ss_pred HhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHH
Q psy17734 311 VFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYK 389 (626)
Q Consensus 311 ~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~ 389 (626)
..+.|..|...|..||.+... .++.|+|+|+|+|++.|+.+|+ +|+|||++|... .+.+++
T Consensus 13 ~LL~D~eRlavF~~ai~~va~------------d~~~DLGaGsGiLs~~Aa~~A~------rViAiE~dPk~a~~a~eN~ 74 (252)
T COG4076 13 DLLRDVERLAVFTSAIAEVAE------------DTFADLGAGSGILSVVAAHAAE------RVIAIEKDPKRARLAEENL 74 (252)
T ss_pred hhhhhHHHHHHHHHHHHHHhh------------hceeeccCCcchHHHHHHhhhc------eEEEEecCcHHHHHhhhcC
Confidence 456788899999999887654 3689999999999987766653 999999999654 777777
Q ss_pred HHcCCCCCcEEEEEecccccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccCh
Q psy17734 390 KEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSH 464 (626)
Q Consensus 390 ~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~ 464 (626)
+-+|.. |++++.+|+++... +++|+|+||+++..+..|..-.++.++-.+||.++.+||+...+-+.||.-+
T Consensus 75 ~v~g~~--n~evv~gDA~~y~f-e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~~~a~pv~~~ 146 (252)
T COG4076 75 HVPGDV--NWEVVVGDARDYDF-ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVRIGANPVRRP 146 (252)
T ss_pred CCCCCc--ceEEEecccccccc-cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHhhccCccccC
Confidence 667775 79999999999998 8999999999999888887666888888899999999999999999999875
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.38 E-value=2.5e-12 Score=114.37 Aligned_cols=106 Identities=19% Similarity=0.159 Sum_probs=79.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecc-cccCCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDM-RTWNAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~-~~~~~p~k~DiIV 419 (626)
++.+|||+|||+|.++..+++.. .+ .+|+|||.+|.++ .++++....+..++ |+++++|+ ..+...++||+|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~--~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~D~v~ 75 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF--PG--ARVVGVDISPEMLEIARERAAEEGLSDR-ITFVQGDAEFDPDFLEPFDLVI 75 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH--TT--SEEEEEESSHHHHHHHHHHHHHTTTTTT-EEEEESCCHGGTTTSSCEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC--CC--CEEEEEeCCHHHHHHHHHHHHhcCCCCC-eEEEECccccCcccCCCCCEEE
Confidence 35789999999999997655522 33 5999999999887 66666656777776 99999999 6667778999999
Q ss_pred ecc-ccccCCC-CCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SEL-LGSFGDN-ELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEl-lgsfg~~-El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.. ...+... +...++++.+.+.|+|||+++-.
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence 966 1111111 12245788899999999998743
No 9
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=4.2e-12 Score=131.00 Aligned_cols=113 Identities=21% Similarity=0.200 Sum_probs=93.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
..++++|||||||.|.+++ .||++.| ++|+||+.|+++. .+++.+...|++++ |+++..|.+++.. +||-|
T Consensus 70 L~~G~~lLDiGCGWG~l~~---~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~~~-v~v~l~d~rd~~e--~fDrI 141 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAI---YAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLEDN-VEVRLQDYRDFEE--PFDRI 141 (283)
T ss_pred CCCCCEEEEeCCChhHHHH---HHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCCcc-cEEEecccccccc--cccee
Confidence 4588999999999999984 6777776 5999999999887 77777888999877 9999999999984 59999
Q ss_pred Ee-ccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEec
Q psy17734 419 VS-ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPI 461 (626)
Q Consensus 419 VS-Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api 461 (626)
|| |.+.++| .|..+..+..+.+.|+|||.++-+..+..=.+-
T Consensus 142 vSvgmfEhvg-~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~ 184 (283)
T COG2230 142 VSVGMFEHVG-KENYDDFFKKVYALLKPGGRMLLHSITGPDQEF 184 (283)
T ss_pred eehhhHHHhC-cccHHHHHHHHHhhcCCCceEEEEEecCCCccc
Confidence 99 4444444 456789999999999999999877666554443
No 10
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.32 E-value=2.2e-11 Score=126.58 Aligned_cols=156 Identities=19% Similarity=0.241 Sum_probs=96.0
Q ss_pred hhhhhch---hhhhcCCCcchhhcchhhHHHHhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHH
Q psy17734 283 SMAAQDF---EDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTA 359 (626)
Q Consensus 283 ~~~~~~y---~d~lq~PLqpl~dnL~s~tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~ 359 (626)
+.....| .|+++.-|.|.|.. ++. .|.++...-+.-+.+....+.+++ ...++.+|||||||.|.+++
T Consensus 8 ~~i~~hYDl~ndfy~l~Ld~~m~Y-S~~---~~~~~~~~Le~AQ~~k~~~~~~~~----~l~~G~~vLDiGcGwG~~~~- 78 (273)
T PF02353_consen 8 ENISAHYDLGNDFYRLFLDPTMKY-SCA---YFDEGDDTLEEAQERKLDLLCEKL----GLKPGDRVLDIGCGWGGLAI- 78 (273)
T ss_dssp HHHHHHHTS-HHHHTTTS-TT----S-------SSTT--HHHHHHHHHHHHHTTT----T--TT-EEEEES-TTSHHHH-
T ss_pred HHHHHHcCCcHHHHHHhcCCCCCC-CCe---ecCCchhhHHHHHHHHHHHHHHHh----CCCCCCEEEEeCCCccHHHH-
Confidence 3444566 37888888776542 222 244333323333333333333332 23478899999999999995
Q ss_pred HHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe-ccccccCCCCCcHHHHH
Q psy17734 360 SLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS-ELLGSFGDNELSPECLY 437 (626)
Q Consensus 360 al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS-Ellgsfg~~El~pe~L~ 437 (626)
.++++.| ++|+||..|++.. .+++.+.+.|+.++ |+++.+|.++++. +||.||| |.+.+++ .+..+.++.
T Consensus 79 --~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~~~-v~v~~~D~~~~~~--~fD~IvSi~~~Ehvg-~~~~~~~f~ 150 (273)
T PF02353_consen 79 --YAAERYG--CHVTGITLSEEQAEYARERIREAGLEDR-VEVRLQDYRDLPG--KFDRIVSIEMFEHVG-RKNYPAFFR 150 (273)
T ss_dssp --HHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSST-EEEEES-GGG-----S-SEEEEESEGGGTC-GGGHHHHHH
T ss_pred --HHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCCCc-eEEEEeeccccCC--CCCEEEEEechhhcC-hhHHHHHHH
Confidence 4555556 5999999999876 67777778899888 9999999998764 9999999 4444443 234578999
Q ss_pred HHHHhcccCcEEEeccce
Q psy17734 438 AAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 438 ~~~r~LkpgGi~IP~~~t 455 (626)
.+.++|||||.++-+..+
T Consensus 151 ~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 151 KISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp HHHHHSETTEEEEEEEEE
T ss_pred HHHHhcCCCcEEEEEecc
Confidence 999999999998866443
No 11
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.25 E-value=3.3e-11 Score=122.49 Aligned_cols=101 Identities=21% Similarity=0.267 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||||-++.. .++..+.+.+|+|+|.|+.+. .+++.....++. ||+++++|+++++.+ +.||+|+
T Consensus 47 ~g~~vLDv~~GtG~~~~~---l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~--~i~~v~~da~~lp~~d~sfD~v~ 121 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRE---LARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ--NIEFVQGDAEDLPFPDNSFDAVT 121 (233)
T ss_dssp S--EEEEET-TTSHHHHH---HGGGSS---EEEEEES-HHHHHHHHHHHHHTT----SEEEEE-BTTB--S-TT-EEEEE
T ss_pred CCCEEEEeCCChHHHHHH---HHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC--CeeEEEcCHHHhcCCCCceeEEE
Confidence 567999999999999853 444444446999999999877 777777777776 599999999999876 7899999
Q ss_pred eccccccCCCCC--cHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNEL--SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP 451 (626)
+ +|+..+. .+.+|.++.|.|||||.++-
T Consensus 122 ~----~fglrn~~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 122 C----SFGLRNFPDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp E----ES-GGG-SSHHHHHHHHHHHEEEEEEEEE
T ss_pred H----HhhHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 8 5555443 46799999999999998763
No 12
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.25 E-value=6e-11 Score=112.16 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|.++..++. +.+...+|++||.|+.++ .+.+..+..+.. |++++++|+++++ .+++||+|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~---~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~--ni~~~~~d~~~l~~~~~~~~D~I 77 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAK---ELNPGAKIIGVDISEEMIEYAKKRAKELGLD--NIEFIQGDIEDLPQELEEKFDII 77 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHH---HSTTTSEEEEEESSHHHHHHHHHHHHHTTST--TEEEEESBTTCGCGCSSTTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHH---hcCCCCEEEEEECcHHHHHHhhccccccccc--ccceEEeehhccccccCCCeeEE
Confidence 468999999999999965442 222236999999999888 666766777776 5999999999987 44799999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
++...- .......+++..+.+.||++|+++-....
T Consensus 78 ~~~~~l--~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVL--HHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTG--GGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCch--hhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 995321 11112346899999999999998866554
No 13
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.24 E-value=7.2e-11 Score=115.55 Aligned_cols=99 Identities=21% Similarity=0.206 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++... ...+|+|||.++.+. .+.++.++++.. ||+++++|++++...++||+|+|
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~----~~~~V~~iD~s~~~~~~a~~~~~~~~~~--~i~~i~~d~~~~~~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR----PELKLTLLESNHKKVAFLREVKAELGLN--NVEIVNGRAEDFQHEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC----CCCeEEEEeCcHHHHHHHHHHHHHhCCC--CeEEEecchhhccccCCccEEEe
Confidence 35789999999999986543322 125899999999776 666776677764 59999999999865679999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+ ...+..+..+.+.|||||.++..
T Consensus 116 ~~~------~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 116 RAL------ASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred hhh------hCHHHHHHHHHHhcCCCCEEEEE
Confidence 652 23466788888999999999843
No 14
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.21 E-value=1.3e-10 Score=117.75 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=79.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||||||||-++..+++. .| ..+|+|+|.|+.+. .+++.....++. +|+++.+|+++++.+ ..||++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~---~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~--~i~fv~~dAe~LPf~D~sFD~vt 124 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKS---VG-TGEVVGLDISESMLEVAREKLKKKGVQ--NVEFVVGDAENLPFPDNSFDAVT 124 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHh---cC-CceEEEEECCHHHHHHHHHHhhccCcc--ceEEEEechhhCCCCCCccCEEE
Confidence 5789999999999998654443 44 36999999999887 777776666665 599999999999987 6899997
Q ss_pred eccccccCCCCC--cHHHHHHHHHhcccCcEE
Q psy17734 420 SELLGSFGDNEL--SPECLYAAQKYLKEDGIS 449 (626)
Q Consensus 420 SEllgsfg~~El--~pe~L~~~~r~LkpgGi~ 449 (626)
+ +|+.... .+..|.++.|.|||||.+
T Consensus 125 ~----~fglrnv~d~~~aL~E~~RVlKpgG~~ 152 (238)
T COG2226 125 I----SFGLRNVTDIDKALKEMYRVLKPGGRL 152 (238)
T ss_pred e----eehhhcCCCHHHHHHHHHHhhcCCeEE
Confidence 7 5665544 477999999999999953
No 15
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.20 E-value=7.1e-11 Score=114.22 Aligned_cols=103 Identities=22% Similarity=0.270 Sum_probs=77.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
+..+|||+|||+|.++..++ ++ +...+|+++|+|+.|+ .++++...|++. +|+++.+|..+-..+++||+|||
T Consensus 31 ~~~~vLDlG~G~G~i~~~la---~~-~~~~~v~~vDi~~~a~~~a~~n~~~n~~~--~v~~~~~d~~~~~~~~~fD~Iv~ 104 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALA---KR-GPDAKVTAVDINPDALELAKRNAERNGLE--NVEVVQSDLFEALPDGKFDLIVS 104 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHH---HT-STCEEEEEEESBHHHHHHHHHHHHHTTCT--TEEEEESSTTTTCCTTCEEEEEE
T ss_pred cCCeEEEecCChHHHHHHHH---Hh-CCCCEEEEEcCCHHHHHHHHHHHHhcCcc--ccccccccccccccccceeEEEE
Confidence 35689999999999996433 32 3335899999999988 778888889986 49999999977655689999999
Q ss_pred ccccccCCCCC---cHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNEL---SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El---~pe~L~~~~r~LkpgGi~I 450 (626)
++.-..+..+. ..+++..+.++|||||.++
T Consensus 105 NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 105 NPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp ---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ccchhcccccchhhHHHHHHHHHHhccCCCEEE
Confidence 98743333222 3567888899999999875
No 16
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.19 E-value=7.8e-11 Score=116.66 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ ++ | .+|+|+|.|+.++ .+++....+++. +|+++..|+.++..+++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La---~~-g--~~V~gvD~S~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLA---AN-G--FDVTAWDKNPMSIANLERIKAAENLD--NLHTAVVDLNNLTFDGEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHH---HC-C--CEEEEEeCCHHHHHHHHHHHHHcCCC--cceEEecChhhCCcCCCcCEEEE
Confidence 34689999999999986443 32 3 4999999999887 666666667774 59999999998877788999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
...-++...+..+.++..+.+.|||||.++
T Consensus 102 ~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~ 131 (197)
T PRK11207 102 TVVLMFLEAKTIPGLIANMQRCTKPGGYNL 131 (197)
T ss_pred ecchhhCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 765444433345678999999999999853
No 17
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.19 E-value=6.3e-11 Score=117.18 Aligned_cols=100 Identities=18% Similarity=0.169 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ ++ | .+|+|+|.++.++ .+.+....+++ ++++...|+..+..++++|+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la---~~-g--~~V~~iD~s~~~l~~a~~~~~~~~~---~v~~~~~d~~~~~~~~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLS---LA-G--YDVRAWDHNPASIASVLDMKARENL---PLRTDAYDINAAALNEDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHH---HC-C--CeEEEEECCHHHHHHHHHHHHHhCC---CceeEeccchhccccCCCCEEEE
Confidence 34689999999999986543 32 3 4999999999887 55555555665 37888888877766678999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..+-++...+..+.++..+.+.|||||.++
T Consensus 101 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~ll 130 (195)
T TIGR00477 101 TVVFMFLQAGRVPEIIANMQAHTRPGGYNL 130 (195)
T ss_pred ecccccCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 765444333445788999999999999854
No 18
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.18 E-value=1.6e-10 Score=118.34 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=82.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+++.....+ .+|+|||.++.++ .++++....+...+ |+++++|+.+++.+ .+|+||+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~--~~v~gvD~S~~ml~~A~~~~~~~~~~~~-v~~~~~d~~~~~~~-~~D~vv~ 131 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDN--CKIIAIDNSPAMIERCRRHIDAYKAPTP-VDVIEGDIRDIAIE-NASMVVL 131 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCC-eEEEeCChhhCCCC-CCCEEeh
Confidence 457899999999999865433222122 5999999999887 77777776676666 99999999988764 5999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
...-++...+....++..+.+.|||||.++-..
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 665455444334678899999999999987654
No 19
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.15 E-value=1e-10 Score=122.44 Aligned_cols=97 Identities=20% Similarity=0.183 Sum_probs=70.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++++|||+|||||.|+++|++ .|+ .+|+|+|.+|.|+ .++++...|+..++ +++. ...+.. .++||+||+
T Consensus 161 ~g~~vLDvG~GSGILaiaA~k----lGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~-~~v~--~~~~~~-~~~~dlvvA 231 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAK----LGA-KKVVAIDIDPLAVEAARENAELNGVEDR-IEVS--LSEDLV-EGKFDLVVA 231 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHH----TTB-SEEEEEESSCHHHHHHHHHHHHTT-TTC-EEES--CTSCTC-CS-EEEEEE
T ss_pred CCCEEEEeCCcHHHHHHHHHH----cCC-CeEEEecCCHHHHHHHHHHHHHcCCCee-EEEE--Eecccc-cccCCEEEE
Confidence 567999999999999964433 454 4999999999998 88999999999987 8774 222222 289999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+++... +-++...+.++|+|||.+|.+
T Consensus 232 NI~~~v-----L~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 232 NILADV-----LLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp ES-HHH-----HHHHHHHCHHHEEEEEEEEEE
T ss_pred CCCHHH-----HHHHHHHHHHhhCCCCEEEEc
Confidence 886422 234556677899999999864
No 20
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.14 E-value=1.9e-10 Score=113.08 Aligned_cols=100 Identities=22% Similarity=0.278 Sum_probs=78.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
+..++||+|||.|..+.++++. | ..|+|+|.|+.++ .+.+.....++ +|+....|+.++..++++|+|+|
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~----G--~~VtAvD~s~~al~~l~~~a~~~~l---~i~~~~~Dl~~~~~~~~yD~I~s 100 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ----G--FDVTAVDISPVALEKLQRLAEEEGL---DIRTRVADLNDFDFPEEYDFIVS 100 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT----T---EEEEEESSHHHHHHHHHHHHHTT----TEEEEE-BGCCBS-TTTEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHC----C--CeEEEEECCHHHHHHHHHHHhhcCc---eeEEEEecchhccccCCcCEEEE
Confidence 4568999999999999754443 3 5999999999888 44444455666 49999999999998899999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..+-.|+..+..|.+++.++..++|||+.+
T Consensus 101 t~v~~fL~~~~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 101 TVVFMFLQRELRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp ESSGGGS-GGGHHHHHHHHHHTEEEEEEEE
T ss_pred EEEeccCCHHHHHHHHHHHHhhcCCcEEEE
Confidence 877788888888999999999999999865
No 21
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.14 E-value=4.4e-10 Score=119.40 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||||||+|.++..++ + .| .+|+|||.++.++ .+++....++.... |+++++|++++..+ ++||+|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La---~-~g--~~V~GID~s~~~i~~Ar~~~~~~~~~~~-i~~~~~dae~l~~~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLA---R-MG--ATVTGVDAVDKNVKIARLHADMDPVTST-IEYLCTTAEKLADEGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHH---H-cC--CEEEEEeCCHHHHHHHHHHHHhcCcccc-eeEEecCHHHhhhccCCCCEEE
Confidence 56799999999999986432 2 34 4999999999877 55554444444444 99999999988644 6899999
Q ss_pred e-ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 S-ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 S-Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+ +.+.++.+ ..+++..+.+.|||||.++-.
T Consensus 204 ~~~vLeHv~d---~~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 204 SLEVIEHVAN---PAEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred EhhHHHhcCC---HHHHHHHHHHHcCCCcEEEEE
Confidence 8 33333322 357899999999999998855
No 22
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.13 E-value=3.5e-10 Score=111.25 Aligned_cols=98 Identities=18% Similarity=0.163 Sum_probs=78.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
+.+|||+|||+|.++..++++. .+ .+|+|||.++.+. .++++.+.+++. +++++++|+.++...++||+|++.
T Consensus 46 g~~VLDiGcGtG~~al~la~~~--~~--~~V~giD~s~~~l~~A~~~~~~~~l~--~i~~~~~d~~~~~~~~~fDlV~~~ 119 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR--PE--LKVTLVDSLGKKIAFLREVAAELGLK--NVTVVHGRAEEFGQEEKFDVVTSR 119 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC--CC--CeEEEEeCcHHHHHHHHHHHHHcCCC--CEEEEeccHhhCCCCCCccEEEEc
Confidence 5789999999999886544322 22 5999999999776 777777778875 499999999998766789999985
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+ ...+.++..+.+.|||||.++..
T Consensus 120 ~~------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 120 AV------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred cc------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 42 23477889999999999998844
No 23
>PLN02244 tocopherol O-methyltransferase
Probab=99.13 E-value=1.7e-09 Score=116.04 Aligned_cols=102 Identities=13% Similarity=0.022 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||||||+|.++.. .+++.+ .+|+|||.++.++ .+.+....+++.++ |+++.+|+.+++.+ +.||+|+
T Consensus 118 ~~~~VLDiGCG~G~~~~~---La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~~~~-v~~~~~D~~~~~~~~~~FD~V~ 191 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRY---LARKYG--ANVKGITLSPVQAARANALAAAQGLSDK-VSFQVADALNQPFEDGQFDLVW 191 (340)
T ss_pred CCCeEEEecCCCCHHHHH---HHHhcC--CEEEEEECCHHHHHHHHHHHHhcCCCCc-eEEEEcCcccCCCCCCCccEEE
Confidence 567899999999999854 333334 4999999999877 56666667777776 99999999998754 6899999
Q ss_pred ecc-ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SEL-LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.. +.++. ....++..+.|.|||||.++-.
T Consensus 192 s~~~~~h~~---d~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 192 SMESGEHMP---DKRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred ECCchhccC---CHHHHHHHHHHHcCCCcEEEEE
Confidence 833 22222 2356889999999999987753
No 24
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.10 E-value=1.3e-09 Score=109.83 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..+++. .+...+|+++|.++.+. .+.++....+. + +++++.+|.+++..+ +++|+|+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~---~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~-~v~~~~~d~~~~~~~~~~fD~V~ 119 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEA---VGPEGHVIGLDFSENMLSVGRQKVKDAGL-H-NVELVHGNAMELPFDDNSFDYVT 119 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHH---hCCCCEEEEEECCHHHHHHHHHHHHhcCC-C-ceEEEEechhcCCCCCCCccEEE
Confidence 5679999999999998644333 22235999999999776 66666555555 3 499999999988754 6899998
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+... +...+...+++..+.+.|||||.++-
T Consensus 120 ~~~~--l~~~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 120 IGFG--LRNVPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred Eecc--cccCCCHHHHHHHHHHHcCcCeEEEE
Confidence 7532 11112245788899999999999873
No 25
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.10 E-value=2.7e-10 Score=102.20 Aligned_cols=101 Identities=25% Similarity=0.349 Sum_probs=76.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CCCCccEEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---APEKADIMV 419 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p~k~DiIV 419 (626)
.+|||+|||+|.++..+++.+ ..+++++|+||.+. .++++...+++.++ ++++.+|.+++. ...++|+|+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-----~~~~~gvdi~~~~~~~a~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-----AARVTGVDIDPEAVELARRNLPRNGLDDR-VEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-----TCEEEEEESSHHHHHHHHHHCHHCTTTTT-EEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC-----CCeEEEEEECHHHHHHHHHHHHHccCCce-EEEEECchhhchhhccCceeEEEE
Confidence 589999999999997555443 25999999999887 78888888888887 999999999875 348999999
Q ss_pred ecccccc--CCC----CCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSF--GDN----ELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsf--g~~----El~pe~L~~~~r~LkpgGi~I 450 (626)
+++.-.- ... +...++++.+.+.|||||.++
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~ 112 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLV 112 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEE
Confidence 9885221 111 123567889999999999865
No 26
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.09 E-value=1.3e-09 Score=105.74 Aligned_cols=103 Identities=21% Similarity=0.166 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCC-CccEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPE-KADIM 418 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~-k~DiI 418 (626)
.++.+++|||||||.++..++ ..+.+.+|||+|.++.+. .+.++..+.+.. |++++.+|.-+.-... ++|.|
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a----~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~--n~~vv~g~Ap~~L~~~~~~dai 106 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWA----LAGPSGRVIAIERDEEALELIERNAARFGVD--NLEVVEGDAPEALPDLPSPDAI 106 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHH----HhCCCceEEEEecCHHHHHHHHHHHHHhCCC--cEEEEeccchHhhcCCCCCCEE
Confidence 477899999999999996544 234457999999999887 788888888854 6999999998763332 79999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
+- |.....+++|+.+...|||||.++-+..|
T Consensus 107 FI------GGg~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 107 FI------GGGGNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EE------CCCCCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 64 33356789999999999999999866444
No 27
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=3.9e-10 Score=117.40 Aligned_cols=101 Identities=22% Similarity=0.181 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.|+. |+++.|+ .+|+|+|.+|.|+ .++.++..|+.... ++.-..+..+....++||+||+
T Consensus 162 ~g~~vlDvGcGSGILaI----Aa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~-~~~~~~~~~~~~~~~~~DvIVA 235 (300)
T COG2264 162 KGKTVLDVGCGSGILAI----AAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELL-VQAKGFLLLEVPENGPFDVIVA 235 (300)
T ss_pred CCCEEEEecCChhHHHH----HHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchh-hhcccccchhhcccCcccEEEe
Confidence 57899999999999995 4444665 5999999999998 88888888987642 4444444444444369999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+++- +-.-.+...+.+.|||||.+|-+-
T Consensus 236 NILA-----~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 236 NILA-----EVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred hhhH-----HHHHHHHHHHHHHcCCCceEEEEe
Confidence 8753 223456677889999999998653
No 28
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.08 E-value=1e-09 Score=112.86 Aligned_cols=122 Identities=9% Similarity=0.095 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc
Q psy17734 314 KDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE 392 (626)
Q Consensus 314 ~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n 392 (626)
+...|+..+.+-+...+.. +. .++.+|||+|||+|.++..++. . + .+|+|+|.++.++ .+++.....
T Consensus 22 ~g~~r~~~~~~~~~~~l~~-l~-----~~~~~vLDiGcG~G~~a~~la~---~-g--~~v~~vD~s~~~l~~a~~~~~~~ 89 (255)
T PRK11036 22 KGQIRQAILWQDLDRLLAE-LP-----PRPLRVLDAGGGEGQTAIKLAE---L-G--HQVILCDLSAEMIQRAKQAAEAK 89 (255)
T ss_pred ccHHHHHHHHHHHHHHHHh-cC-----CCCCEEEEeCCCchHHHHHHHH---c-C--CEEEEEECCHHHHHHHHHHHHhc
Confidence 4445555555544444432 21 1456999999999999864433 2 3 4999999999877 666666667
Q ss_pred CCCCCcEEEEEecccccC--CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 393 QWAQSDVTIVSEDMRTWN--APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 393 ~~~~~nV~vi~~D~~~~~--~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
++.++ |+++++|+.++. .+++||+|++...-.+. +....++..+.+.|||||+++
T Consensus 90 g~~~~-v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~--~~~~~~l~~~~~~LkpgG~l~ 146 (255)
T PRK11036 90 GVSDN-MQFIHCAAQDIAQHLETPVDLILFHAVLEWV--ADPKSVLQTLWSVLRPGGALS 146 (255)
T ss_pred CCccc-eEEEEcCHHHHhhhcCCCCCEEEehhHHHhh--CCHHHHHHHHHHHcCCCeEEE
Confidence 77665 999999998874 34789999984332221 223568899999999999986
No 29
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.08 E-value=4.2e-10 Score=117.89 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=78.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
+.+|||+|||+|.++..++ + .| .+|+|+|.|+.++ .+++....++. +++++..|+.+...+++||+|++.
T Consensus 121 ~~~vLDlGcG~G~~~~~la---~-~g--~~V~avD~s~~ai~~~~~~~~~~~l---~v~~~~~D~~~~~~~~~fD~I~~~ 191 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLA---L-LG--FDVTAVDINQQSLENLQEIAEKENL---NIRTGLYDINSASIQEEYDFILST 191 (287)
T ss_pred CCCEEEeCCCCCHHHHHHH---H-CC--CEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEechhcccccCCccEEEEc
Confidence 3589999999999986433 3 24 4999999999887 55566556666 499999999887777899999998
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
...++...+..+.++..+.+.|||||.++
T Consensus 192 ~vl~~l~~~~~~~~l~~~~~~LkpgG~~l 220 (287)
T PRK12335 192 VVLMFLNRERIPAIIKNMQEHTNPGGYNL 220 (287)
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 76556555566889999999999999844
No 30
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.08 E-value=4.9e-10 Score=113.85 Aligned_cols=102 Identities=19% Similarity=0.279 Sum_probs=80.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC---CCccEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP---EKADIM 418 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p---~k~DiI 418 (626)
..+|||+|||+|.++++ ++++... .+|+|||..+.+. .|+++++.|+|.++ |+++++|+.++... .+||+|
T Consensus 45 ~~~IlDlGaG~G~l~L~---la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~r-i~v~~~Di~~~~~~~~~~~fD~I 119 (248)
T COG4123 45 KGRILDLGAGNGALGLL---LAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEER-IQVIEADIKEFLKALVFASFDLI 119 (248)
T ss_pred CCeEEEecCCcCHHHHH---HhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhc-eeEehhhHHHhhhcccccccCEE
Confidence 57899999999999964 4443332 6999999999766 99999999999998 99999999998643 469999
Q ss_pred EeccccccCCCCC-----------------cHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNEL-----------------SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~El-----------------~pe~L~~~~r~LkpgGi~I 450 (626)
||++.- |-.+.. ..+++..+.+.|||||.+.
T Consensus 120 i~NPPy-f~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~ 167 (248)
T COG4123 120 ICNPPY-FKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLA 167 (248)
T ss_pred EeCCCC-CCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEE
Confidence 999863 322221 2456778889999999864
No 31
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.05 E-value=1.8e-10 Score=115.41 Aligned_cols=102 Identities=18% Similarity=0.208 Sum_probs=79.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
.+.+|||||||-|.|+..+++.+ ..|+|+|.++.++ +|+.....++. +|+.....++++... ++||+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G------a~VtgiD~se~~I~~Ak~ha~e~gv---~i~y~~~~~edl~~~~~~FDvV~ 129 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG------ASVTGIDASEKPIEVAKLHALESGV---NIDYRQATVEDLASAGGQFDVVT 129 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC------CeeEEecCChHHHHHHHHhhhhccc---cccchhhhHHHHHhcCCCccEEE
Confidence 57899999999999996544444 4999999999877 66666666665 488999999998765 7999999
Q ss_pred e-ccccccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 420 S-ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 420 S-Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
| |.+.+.-+ ...++.++.+.+||||+++-+...
T Consensus 130 cmEVlEHv~d---p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 130 CMEVLEHVPD---PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred EhhHHHccCC---HHHHHHHHHHHcCCCcEEEEeccc
Confidence 9 66544322 234889999999999998866443
No 32
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.05 E-value=2.9e-09 Score=110.09 Aligned_cols=105 Identities=9% Similarity=0.022 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH--HcCCCCCcEEEEEecccccCCC-CCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK--EEQWAQSDVTIVSEDMRTWNAP-EKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~--~n~~~~~nV~vi~~D~~~~~~p-~k~Di 417 (626)
++.+|||+|||+|.++.. .+++.+.+.+|+|+|.++.++ .+++... ..+..+ +|+++++|+++++.+ +.||+
T Consensus 73 ~~~~VLDlGcGtG~~~~~---la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~-~i~~~~~d~~~lp~~~~sfD~ 148 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFL---LSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYK-NIEWIEGDATDLPFDDCYFDA 148 (261)
T ss_pred CCCEEEEECCcCCHHHHH---HHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCC-CeEEEEcccccCCCCCCCEeE
Confidence 467999999999998753 333333335999999999887 5544332 122223 499999999998876 58999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|++...-+.. +....++..+.|.|||||.++-.
T Consensus 149 V~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 149 ITMGYGLRNV--VDRLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred EEEecccccC--CCHHHHHHHHHHHcCcCcEEEEE
Confidence 9884321111 22467899999999999987654
No 33
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.05 E-value=2e-09 Score=109.47 Aligned_cols=108 Identities=15% Similarity=0.174 Sum_probs=78.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+++.....+ .+|+|+|.++.++ .+++.....+...+ |+++++|+.++..+ .+|+|++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~--~~v~gvD~s~~ml~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~-~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPN--VKIIGIDNSQPMVERCRQHIAAYHSEIP-VEILCNDIRHVEIK-NASMVIL 128 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCC--CeEEEEeCCHHHHHHHHHHHHhcCCCCC-eEEEECChhhCCCC-CCCEEee
Confidence 457899999999999865444322122 5999999999877 66666555554455 99999999998764 6899888
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
...-++...+....++..+.+.|||||.++-..
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 553333322223568899999999999988654
No 34
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.02 E-value=3.5e-09 Score=104.85 Aligned_cols=101 Identities=18% Similarity=0.219 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc--CCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW--NAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~--~~p~k~DiI 418 (626)
++.+|||+|||+|.++..+++.. +...+|+|+|.++.+. .++++.+.++..+. |+++.+|+.+. ..++++|.|
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~---~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~-v~~~~~d~~~~l~~~~~~~D~V 115 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLV---GETGKVYAVDKDEKAINLTRRNAEKFGVLNN-IVLIKGEAPEILFTINEKFDRI 115 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHHhCCCCC-eEEEEechhhhHhhcCCCCCEE
Confidence 56799999999999986544432 2225999999999776 67777777775555 99999999874 223689999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.. ..+...++++.+.+.|||||.++-
T Consensus 116 ~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 116 FIGG-----GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred EECC-----CcccHHHHHHHHHHHcCCCcEEEE
Confidence 9842 123347789999999999999884
No 35
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.01 E-value=3.8e-09 Score=95.07 Aligned_cols=102 Identities=21% Similarity=0.215 Sum_probs=75.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc--CCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW--NAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~--~~p~k~DiI 418 (626)
++.+|||+|||+|.++..+++. .+. .+|+++|.++.+. .++++++..+.. +++++.+|..+. ..++++|+|
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~---~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~D~v 92 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARL---VPN-GRVYAIERNPEALRLIERNARRFGVS--NIVIVEGDAPEALEDSLPEPDRV 92 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHH---CCC-ceEEEEcCCHHHHHHHHHHHHHhCCC--ceEEEeccccccChhhcCCCCEE
Confidence 4569999999999998654432 222 5999999999776 666666666654 499999997753 234689999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
++.. ..+...+.++.+.++|||||.++-.-+
T Consensus 93 ~~~~-----~~~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 93 FIGG-----SGGLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred EECC-----cchhHHHHHHHHHHHcCCCCEEEEEec
Confidence 9843 122346789999999999999987654
No 36
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.00 E-value=5e-10 Score=98.50 Aligned_cols=97 Identities=25% Similarity=0.261 Sum_probs=69.6
Q ss_pred EEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEEe-cc
Q psy17734 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMVS-EL 422 (626)
Q Consensus 346 VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIVS-El 422 (626)
|||+|||+|...+.++... ..+...++++||.++.++ .+++.....+. + ++++++|++++.. .+++|+|++ ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~-~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGPSSRVIGVDISPEMLELAKKRFSEDGP--K-VRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT--T-SEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHh-hhcccceEEEEECCHHHHHHHHHhchhcCC--c-eEEEECCHhHCcccCCCeeEEEEcCC
Confidence 7999999999998777665 223335999999999887 56666555555 4 9999999999864 369999999 34
Q ss_pred -ccccCCCCCcHHHHHHHHHhcccCc
Q psy17734 423 -LGSFGDNELSPECLYAAQKYLKEDG 447 (626)
Q Consensus 423 -lgsfg~~El~pe~L~~~~r~LkpgG 447 (626)
+.+ ...+....+++.+.+.|||||
T Consensus 77 ~~~~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHH-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGG-SSHHHHHHHHHHHHHTEEEEE
T ss_pred ccCC-CCHHHHHHHHHHHHHHhCCCC
Confidence 443 333334678899999999998
No 37
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.98 E-value=2e-09 Score=91.87 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=66.3
Q ss_pred EEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEecccc
Q psy17734 347 MVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLG 424 (626)
Q Consensus 347 LDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEllg 424 (626)
||+|||+|..+..++.. .+ .+|+++|.++.+. .+++... .. ++.++.+|+++++.+ +.||+|++.-.-
T Consensus 1 LdiG~G~G~~~~~l~~~---~~--~~v~~~D~~~~~~~~~~~~~~----~~-~~~~~~~d~~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR---GG--ASVTGIDISEEMLEQARKRLK----NE-GVSFRQGDAEDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHT---TT--CEEEEEES-HHHHHHHHHHTT----TS-TEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhc---cC--CEEEEEeCCHHHHHHHHhccc----cc-CchheeehHHhCccccccccccccccce
Confidence 79999999998654333 12 5999999999876 3343321 22 388999999999876 789999995543
Q ss_pred ccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 425 SFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 425 sfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
++. +....+++.+.|.|||||.++
T Consensus 71 ~~~--~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 71 HHL--EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp GGS--SHHHHHHHHHHHHEEEEEEEE
T ss_pred eec--cCHHHHHHHHHHHcCcCeEEe
Confidence 333 445778999999999999976
No 38
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.97 E-value=5.2e-09 Score=108.45 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..+ ++..+...+|+|+|.++.++ .++++....+.. +++++.+|+++++.+ +.||+|+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~---a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~--~v~~~~~d~~~l~~~~~~fD~Vi 151 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLA---ARRVGPTGKVIGVDMTPEMLAKARANARKAGYT--NVEFRLGEIEALPVADNSVDVII 151 (272)
T ss_pred CCCEEEEeCCCCCHHHHHH---HHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC--CEEEEEcchhhCCCCCCceeEEE
Confidence 5689999999999887533 33334435899999999876 667766666664 499999999988764 5899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+...... ....+.++..+.+.|||||.++-.
T Consensus 152 ~~~v~~~--~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 152 SNCVINL--SPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EcCcccC--CCCHHHHHHHHHHHcCCCcEEEEE
Confidence 9754322 122467899999999999998764
No 39
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.96 E-value=5.8e-09 Score=102.17 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=74.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+++.. .+.+|+++|.++.+. .++++...++.. +|+++.+|... ..++++|+|++
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~----~~~~v~~vD~s~~~~~~a~~n~~~~~~~--~i~~~~~d~~~-~~~~~~D~v~~ 103 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQF----PSLQVTAIERNPDALRLIKENRQRFGCG--NIDIIPGEAPI-ELPGKADAIFI 103 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHC----CCCEEEEEECCHHHHHHHHHHHHHhCCC--CeEEEecCchh-hcCcCCCEEEE
Confidence 45789999999999996544332 125999999999876 667777677764 49999999753 34578999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
... .+..+++++.+.+.|||||.++-
T Consensus 104 ~~~-----~~~~~~~l~~~~~~Lk~gG~lv~ 129 (187)
T PRK08287 104 GGS-----GGNLTAIIDWSLAHLHPGGRLVL 129 (187)
T ss_pred CCC-----ccCHHHHHHHHHHhcCCCeEEEE
Confidence 432 23357788888999999999875
No 40
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.96 E-value=4.3e-09 Score=105.65 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=77.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec-c
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE-L 422 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE-l 422 (626)
+|||+|||+|.++..+ ++..+ ..+|+++|.++.+. .+.+.....++.++ ++++.+|+.+...+++||+|++. .
T Consensus 2 ~vLDiGcG~G~~~~~l---a~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~-i~~~~~d~~~~~~~~~fD~I~~~~~ 76 (224)
T smart00828 2 RVLDFGCGYGSDLIDL---AERHP-HLQLHGYTISPEQAEVGRERIRALGLQGR-IRIFYRDSAKDPFPDTYDLVFGFEV 76 (224)
T ss_pred eEEEECCCCCHHHHHH---HHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcc-eEEEecccccCCCCCCCCEeehHHH
Confidence 6999999999987543 33332 25999999999876 66666777788887 99999999766556789999983 3
Q ss_pred ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 423 LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 423 lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.+. ...++++..+.+.|||||.++-.
T Consensus 77 l~~~---~~~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 77 IHHI---KDKMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred HHhC---CCHHHHHHHHHHHcCCCCEEEEE
Confidence 3333 22578999999999999998854
No 41
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.96 E-value=3.7e-09 Score=108.67 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++.+|||+|||+|.++..++... .+ .+|+|+|.++.++...+. . +++++.+|++++....+||+|+|.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~--p~--~~v~gvD~s~~~~~~a~~-------~-~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRW--PG--AVIEALDSSPEMVAAARE-------R-GVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHC--CC--CEEEEEECCHHHHHHHHh-------c-CCcEEEcChhhCCCCCCceEEEEe
Confidence 56799999999999986433321 12 499999999987733221 1 388999999988655789999996
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+-.+.. ....++..+.+.|||||.++-
T Consensus 97 ~~l~~~~--d~~~~l~~~~~~LkpgG~l~~ 124 (255)
T PRK14103 97 AALQWVP--EHADLLVRWVDELAPGSWIAV 124 (255)
T ss_pred hhhhhCC--CHHHHHHHHHHhCCCCcEEEE
Confidence 5433322 236688899999999998764
No 42
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.96 E-value=4.4e-09 Score=110.27 Aligned_cols=99 Identities=23% Similarity=0.250 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ + .|. .+|+|+|.++.++ .++++...|+..++ ++++.++.... .+++||+|++
T Consensus 159 ~g~~VLDvGcGsG~lai~aa---~-~g~-~~V~avDid~~al~~a~~n~~~n~~~~~-~~~~~~~~~~~-~~~~fDlVva 231 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAAL---K-LGA-AKVVGIDIDPLAVESARKNAELNQVSDR-LQVKLIYLEQP-IEGKADVIVA 231 (288)
T ss_pred CCCEEEEeCCChhHHHHHHH---H-cCC-CeEEEEECCHHHHHHHHHHHHHcCCCcc-eEEEecccccc-cCCCceEEEE
Confidence 45799999999999985433 3 343 4999999999887 77888888888776 88888774332 2468999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.+. +....++..+.+.|||||.++-.
T Consensus 232 n~~~-----~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 232 NILA-----EVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred ecCH-----HHHHHHHHHHHHHcCCCcEEEEE
Confidence 7642 22356778888999999998753
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.95 E-value=4.8e-09 Score=111.74 Aligned_cols=103 Identities=15% Similarity=0.070 Sum_probs=72.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHH-HcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKK-EEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~-~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||||||+|.++..++.+ |+ .+|+|||.++.+....+..+ ..+-.. +|+++.+|+++++.+++||+|+|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~----g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~-~i~~~~~d~e~lp~~~~FD~V~s 195 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGA----GA-KLVVGIDPSQLFLCQFEAVRKLLGNDQ-RAHLLPLGIEQLPALKAFDTVFS 195 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHc----CC-CEEEEEcCCHHHHHHHHHHHHhcCCCC-CeEEEeCCHHHCCCcCCcCEEEE
Confidence 5679999999999998644333 33 37999999987653222222 122223 49999999999987789999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+ +........++..+.+.|||||.++-.
T Consensus 196 ~~v--l~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 196 MGV--LYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CCh--hhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 322 111122356889999999999998864
No 44
>PLN03075 nicotianamine synthase; Provisional
Probab=98.95 E-value=1.3e-08 Score=106.43 Aligned_cols=108 Identities=16% Similarity=0.158 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH-cCCCCCcEEEEEecccccCC-CCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE-EQWAQSDVTIVSEDMRTWNA-PEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~-n~~~~~nV~vi~~D~~~~~~-p~k~DiI 418 (626)
+.++|+|||||.|+++...+.++. ..+.+++++|.++.+. .|++.... .++.++ |+++.+|+.+... .++||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~--~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~r-V~F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHH--LPTTSFHNFDIDPSANDVARRLVSSDPDLSKR-MFFHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHhhhccCccCC-cEEEECchhhcccccCCcCEE
Confidence 457899999999999765444332 2336999999999887 77776644 788887 9999999988643 3789999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
++-.+.+| +.+.-.++++.+.+.|+|||.++-.+
T Consensus 200 F~~ALi~~-dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 200 FLAALVGM-DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred EEeccccc-ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 99744333 23445789999999999999998664
No 45
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.94 E-value=7.9e-09 Score=103.00 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIV 419 (626)
++.+|||+|||+|.++..++++. +...+|+++|.++.+. .++++...++..++ ++++.+|..+.. ...+||+|+
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~---~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~-v~~~~~d~~~~~~~~~~fD~Ii 147 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAI---ERRGKVYTVEIVKELAIYAAQNIERLGYWGV-VEVYHGDGKRGLEKHAPFDAII 147 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhc---CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEECCcccCCccCCCccEEE
Confidence 56799999999999986544433 2224999999999776 67777777777665 999999998753 236899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+... .+. +.+.+.+.|||||.++
T Consensus 148 ~~~~-----~~~---~~~~l~~~L~~gG~lv 170 (205)
T PRK13944 148 VTAA-----AST---IPSALVRQLKDGGVLV 170 (205)
T ss_pred EccC-----cch---hhHHHHHhcCcCcEEE
Confidence 8432 122 2345667899999875
No 46
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.93 E-value=7.2e-09 Score=108.51 Aligned_cols=104 Identities=22% Similarity=0.201 Sum_probs=75.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
..+|||+|||+|.++..++.... +.+|+|+|.|+.++ .++++.+.++..++ |+++++|+.+.-.+++||+|||+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~----~~~v~avDis~~al~~A~~n~~~~~~~~~-i~~~~~D~~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFP----EAEVDAVDISPDALAVAEINIERHGLEDR-VTLIQSDLFAALPGRKYDLIVSN 196 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEECchhhccCCCCccEEEEC
Confidence 46899999999999865443221 25999999999887 88888888888776 99999998654333589999997
Q ss_pred cccccCC-----------C----------CC---cHHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGSFGD-----------N----------EL---SPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~-----------~----------El---~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.- ... + .+ ...++..+.++|+|||.++-.
T Consensus 197 PPy-~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 197 PPY-VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred CCC-CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 531 110 0 11 134566778899999998744
No 47
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.93 E-value=9.2e-09 Score=105.67 Aligned_cols=98 Identities=13% Similarity=0.195 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ +..+. .+|+|||.++.++ .+++. . . +++++.+|+.++..+.++|+|+|
T Consensus 31 ~~~~vLDiGcG~G~~~~~la---~~~~~-~~v~gvD~s~~~i~~a~~~-----~-~-~~~~~~~d~~~~~~~~~fD~v~~ 99 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLV---ERWPA-ARITGIDSSPAMLAEARSR-----L-P-DCQFVEADIASWQPPQALDLIFA 99 (258)
T ss_pred CCCEEEEEcccCCHHHHHHH---HHCCC-CEEEEEECCHHHHHHHHHh-----C-C-CCeEEECchhccCCCCCccEEEE
Confidence 56799999999999986433 22221 4999999999877 33332 2 2 49999999998876679999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
...-.+.. ....++..+.+.|||||.++-+
T Consensus 100 ~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 100 NASLQWLP--DHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred ccChhhCC--CHHHHHHHHHHhcCCCcEEEEE
Confidence 64322221 2356889999999999997764
No 48
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.91 E-value=7.1e-09 Score=109.78 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=72.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHH-cCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKE-EQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~-n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
.++++|||||||+|.++..++ . .|+ .+|+|||.++.+....+.++. .+-..+ +.++.++++++....+||+|+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~---~-~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~-v~~~~~~ie~lp~~~~FD~V~ 193 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRML---G-HGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKR-AILEPLGIEQLHELYAFDTVF 193 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHH---H-cCC-CEEEEEcCCHHHHHHHHHHHHHhccCCC-eEEEECCHHHCCCCCCcCEEE
Confidence 356899999999999875433 2 233 389999999976532222221 121234 999999999987667899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|.-+-+. ......+|..+.+.|||||.++-.
T Consensus 194 s~gvL~H--~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 194 SMGVLYH--RKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred Ecchhhc--cCCHHHHHHHHHHhcCCCCEEEEE
Confidence 9432111 122356899999999999998854
No 49
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.91 E-value=7.7e-09 Score=102.91 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=74.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecc-cccC--C-CCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDM-RTWN--A-PEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~-~~~~--~-p~k~D 416 (626)
+..+|||+|||+|.++..++.. .. ..+|+|||.|+.++ .+.++...+++. ||+++++|+ +.+. . ++.+|
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~---~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~--~v~~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKA---NP-DINFIGIEVHEPGVGKALKKIEEEGLT--NLRLLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHH---CC-CccEEEEEechHHHHHHHHHHHHcCCC--CEEEEecCHHHHHHHHcCccccc
Confidence 3468999999999998654332 21 25899999999877 666666667763 599999999 6654 3 46899
Q ss_pred EEEeccccccCC--C----CCcHHHHHHHHHhcccCcEEE
Q psy17734 417 IMVSELLGSFGD--N----ELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 417 iIVSEllgsfg~--~----El~pe~L~~~~r~LkpgGi~I 450 (626)
.|++.....+.. . ...+.++..+.+.|||||.++
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~ 153 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIH 153 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEE
Confidence 999854322211 1 114678999999999999987
No 50
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.90 E-value=1.5e-08 Score=98.62 Aligned_cols=100 Identities=17% Similarity=0.084 Sum_probs=72.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ + .+ .+|+++|.++.+. .++++...++. +++++.+|..+.. +.+||+|++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~---~-~~--~~v~~vD~s~~~~~~a~~~~~~~~~---~~~~~~~d~~~~~-~~~fD~Vi~ 88 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLK---G-KG--KCILTTDINPFAVKELRENAKLNNV---GLDVVMTDLFKGV-RGKFDVILF 88 (179)
T ss_pred CCCeEEEeCCChhHHHHHHH---h-cC--CEEEEEECCHHHHHHHHHHHHHcCC---ceEEEEccccccc-CCcccEEEE
Confidence 34689999999999986433 2 23 2899999999877 66777666664 4999999987754 468999999
Q ss_pred ccccccCCC-------------------CCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDN-------------------ELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~-------------------El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+.-..... +....++..+.++|||||.++-
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 864211110 0134578888999999998664
No 51
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.90 E-value=1.2e-08 Score=102.33 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIV 419 (626)
++.+|||+|||+|.++..+++.. +...+|++||.++.+. .++++...+++. ||+++.+|..+.. ...+||+|+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~---~~~g~V~~vD~~~~~~~~A~~~~~~~g~~--~v~~~~~d~~~~~~~~~~fD~Ii 151 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIV---GRDGLVVSIERIPELAEKAERRLRKLGLD--NVIVIVGDGTQGWEPLAPYDRIY 151 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHCCCC--CeEEEECCcccCCcccCCCCEEE
Confidence 56799999999999996544433 3224899999999876 777777778874 5999999998753 236899998
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+... .+.+.+.+.+.|||||+++
T Consensus 152 ~~~~--------~~~~~~~~~~~L~~gG~lv 174 (215)
T TIGR00080 152 VTAA--------GPKIPEALIDQLKEGGILV 174 (215)
T ss_pred EcCC--------cccccHHHHHhcCcCcEEE
Confidence 7421 1234455678899999876
No 52
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.90 E-value=9.1e-09 Score=108.89 Aligned_cols=103 Identities=23% Similarity=0.244 Sum_probs=75.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSEL 422 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEl 422 (626)
.+|||+|||+|.++..++.. .. ..+|+|+|.|+.++ .++++.+.++..++ |+++++|+.+...+.+||+|||++
T Consensus 135 ~~VLDlG~GsG~iai~la~~---~p-~~~V~avDis~~al~~A~~n~~~~~l~~~-i~~~~~D~~~~l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA---FP-DAEVDAVDISPDALAVAEINIERHGLEDR-VTLIESDLFAALPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHH---CC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCc-EEEEECchhhhCCCCCccEEEECC
Confidence 58999999999998654332 21 25999999999887 88888888888776 999999987643345899999975
Q ss_pred ccccC---------------------CCCC---cHHHHHHHHHhcccCcEEEec
Q psy17734 423 LGSFG---------------------DNEL---SPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 423 lgsfg---------------------~~El---~pe~L~~~~r~LkpgGi~IP~ 452 (626)
. +.. ...+ ...++..+.++|+|||.++-.
T Consensus 210 P-yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 210 P-YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred C-CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3 111 1111 134667778899999998743
No 53
>PRK14967 putative methyltransferase; Provisional
Probab=98.90 E-value=9.2e-09 Score=103.72 Aligned_cols=100 Identities=19% Similarity=0.058 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ +. +. .+|+++|.++.+. .++++...++. +++++++|+.+....++||+|++
T Consensus 36 ~~~~vLDlGcG~G~~~~~la---~~-~~-~~v~~vD~s~~~l~~a~~n~~~~~~---~~~~~~~d~~~~~~~~~fD~Vi~ 107 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAA---AA-GA-GSVTAVDISRRAVRSARLNALLAGV---DVDVRRGDWARAVEFRPFDVVVS 107 (223)
T ss_pred CCCeEEEecCCHHHHHHHHH---Hc-CC-CeEEEEECCHHHHHHHHHHHHHhCC---eeEEEECchhhhccCCCeeEEEE
Confidence 45789999999999986433 32 32 4999999999877 66666666665 49999999987644578999999
Q ss_pred ccccccCCCC-----------------C---cHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNE-----------------L---SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~E-----------------l---~pe~L~~~~r~LkpgGi~I 450 (626)
++. +....+ . ...+++.+.++|||||+++
T Consensus 108 npP-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~ 156 (223)
T PRK14967 108 NPP-YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLL 156 (223)
T ss_pred CCC-CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEE
Confidence 863 221111 1 2345677789999999988
No 54
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.89 E-value=1.2e-08 Score=102.19 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=70.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIV 419 (626)
++.+|||+|||+|.++..+++.. +...+|+++|.++.+. .++++.+..+.. ||+++++|..+.. ...+||+|+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~---~~~~~V~~vE~~~~~~~~a~~~l~~~g~~--~v~~~~gd~~~~~~~~~~fD~I~ 150 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIV---GKSGKVVTIERIPELAEKAKKTLKKLGYD--NVEVIVGDGTLGYEENAPYDRIY 150 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhc---CCCCEEEEEeCCHHHHHHHHHHHHHcCCC--CeEEEECCcccCCCcCCCcCEEE
Confidence 56799999999999985444332 3235999999999776 777777777764 5999999987643 336899998
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+.-. . +++...+.+.|||||.++
T Consensus 151 ~~~~-----~---~~~~~~l~~~LkpgG~lv 173 (212)
T PRK13942 151 VTAA-----G---PDIPKPLIEQLKDGGIMV 173 (212)
T ss_pred ECCC-----c---ccchHHHHHhhCCCcEEE
Confidence 7321 1 223345667899999865
No 55
>PRK06922 hypothetical protein; Provisional
Probab=98.88 E-value=1.5e-08 Score=114.97 Aligned_cols=147 Identities=18% Similarity=0.183 Sum_probs=93.1
Q ss_pred chhhcchhhHHHHhhCCHHHHHHHHHHHHH--HHhh---ccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEE
Q psy17734 299 PLANDLSSFTYEVFEKDPIKYIRYQEAVQQ--ALLD---RVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRV 373 (626)
Q Consensus 299 pl~dnL~s~tYe~fe~D~~ry~~Y~~AI~~--al~d---~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V 373 (626)
|+.+...-..|+.|.+++.+|+.|.++..- .+.. ......+..++.+|||+|||+|.++..++.. . ...+|
T Consensus 370 ~~~~r~~~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d~~~g~rVLDIGCGTG~ls~~LA~~---~-P~~kV 445 (677)
T PRK06922 370 MMHARANVLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILDYIKGDTIVDVGAGGGVMLDMIEEE---T-EDKRI 445 (677)
T ss_pred hHHHHHHhHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhhhcCCCEEEEeCCCCCHHHHHHHHh---C-CCCEE
Confidence 566554446788888888888877643221 0000 0000001125679999999999987543322 2 12599
Q ss_pred EEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--C-CCCccEEEeccccc-cC----------CCCCcHHHHHH
Q psy17734 374 YAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--A-PEKADIMVSELLGS-FG----------DNELSPECLYA 438 (626)
Q Consensus 374 ~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~-p~k~DiIVSEllgs-fg----------~~El~pe~L~~ 438 (626)
+|+|.++.++ .+++.....+ . +++++.+|+.++. . +++||+|++..+-+ +. ..+....++..
T Consensus 446 tGIDIS~~MLe~Ararl~~~g--~-~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLre 522 (677)
T PRK06922 446 YGIDISENVIDTLKKKKQNEG--R-SWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQS 522 (677)
T ss_pred EEEECCHHHHHHHHHHhhhcC--C-CeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHH
Confidence 9999999877 5544433333 3 4999999998865 2 47899999854211 11 01223567888
Q ss_pred HHHhcccCcEEEec
Q psy17734 439 AQKYLKEDGISIPY 452 (626)
Q Consensus 439 ~~r~LkpgGi~IP~ 452 (626)
+.+.|||||.++-.
T Consensus 523 I~RVLKPGGrLII~ 536 (677)
T PRK06922 523 AYEVLKPGGRIIIR 536 (677)
T ss_pred HHHHcCCCcEEEEE
Confidence 99999999998764
No 56
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.88 E-value=9.2e-09 Score=111.36 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=75.0
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC--CCcEEEEEecccccCCCCCccEEEe
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA--QSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~--~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
.+|||+|||+|.++..+++. . ...+|++||.|+.|+ .++++.+.|+.. ++ ++++.+|+.+-..+.+||+|+|
T Consensus 230 ~~VLDLGCGtGvi~i~la~~---~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~-v~~~~~D~l~~~~~~~fDlIls 304 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDK---N-PQAKVVFVDESPMAVASSRLNVETNMPEALDR-CEFMINNALSGVEPFRFNAVLC 304 (378)
T ss_pred CeEEEEeccccHHHHHHHHh---C-CCCEEEEEECCHHHHHHHHHHHHHcCcccCce-EEEEEccccccCCCCCEEEEEE
Confidence 58999999999999643332 2 225999999999887 777777777643 24 8999999865433468999999
Q ss_pred ccccccCCC---CCcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDN---ELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~---El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.-+.+.. +...+++..+.+.|||||.++-
T Consensus 305 NPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~i 338 (378)
T PRK15001 305 NPPFHQQHALTDNVAWEMFHHARRCLKINGELYI 338 (378)
T ss_pred CcCcccCccCCHHHHHHHHHHHHHhcccCCEEEE
Confidence 986443321 1124577888899999998653
No 57
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.87 E-value=1.3e-08 Score=104.08 Aligned_cols=95 Identities=13% Similarity=0.117 Sum_probs=69.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
+..+|||+|||+|.++..+. + .+ .+|+++|.|+.++ .+++.. .. +.++.+|+++++.+ ++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~---~-~~--~~v~~~D~s~~~l~~a~~~~------~~-~~~~~~d~~~~~~~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWR---E-RG--SQVTALDLSPPMLAQARQKD------AA-DHYLAGDIESLPLATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHH---H-cC--CeEEEEECCHHHHHHHHhhC------CC-CCEEEcCcccCcCCCCcEEEEE
Confidence 45689999999999875432 2 23 4999999999776 333321 12 67889999988765 5799999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|...-.+ .+...+.+..+.+.|||||.++-
T Consensus 109 s~~~l~~--~~d~~~~l~~~~~~Lk~gG~l~~ 138 (251)
T PRK10258 109 SNLAVQW--CGNLSTALRELYRVVRPGGVVAF 138 (251)
T ss_pred ECchhhh--cCCHHHHHHHHHHHcCCCeEEEE
Confidence 9653222 12246788999999999999873
No 58
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.87 E-value=9.7e-09 Score=100.54 Aligned_cols=101 Identities=19% Similarity=0.147 Sum_probs=68.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE-Ee
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM-VS 420 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI-VS 420 (626)
-..++++|||.|.|+.. .+.+. .+++|+|.++.|+ .|++... ++. +|+++..|+.++.++++||+| +|
T Consensus 44 y~~alEvGCs~G~lT~~---LA~rC---d~LlavDis~~Al~~Ar~Rl~--~~~--~V~~~~~dvp~~~P~~~FDLIV~S 113 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTER---LAPRC---DRLLAVDISPRALARARERLA--GLP--HVEWIQADVPEFWPEGRFDLIVLS 113 (201)
T ss_dssp EEEEEEE--TTSHHHHH---HGGGE---EEEEEEES-HHHHHHHHHHTT--T-S--SEEEEES-TTT---SS-EEEEEEE
T ss_pred cceeEecCCCccHHHHH---HHHhh---CceEEEeCCHHHHHHHHHhcC--CCC--CeEEEECcCCCCCCCCCeeEEEEe
Confidence 45799999999999964 34433 3999999999998 4444432 343 599999999998888999997 55
Q ss_pred ccccccCCC-CCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 421 ELLGSFGDN-ELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 421 Ellgsfg~~-El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
|. ++|++. +.+...++.+...|+|||.+|-...
T Consensus 114 EV-lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 114 EV-LYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp S--GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hH-hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 64 566654 4456677888889999999997653
No 59
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.86 E-value=1.6e-08 Score=104.75 Aligned_cols=102 Identities=15% Similarity=0.186 Sum_probs=73.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||||||+|.++..++ +..+ .+|+|+|.++.++ .+++... . .++ |+++.+|+.+.+.+ ++||+|+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la---~~~~--~~v~giD~s~~~~~~a~~~~~-~--~~~-i~~~~~D~~~~~~~~~~FD~V~ 122 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYIN---EKYG--AHVHGVDICEKMVNIAKLRNS-D--KNK-IEFEANDILKKDFPENTFDMIY 122 (263)
T ss_pred CCCEEEEEcCCCChhhHHHH---hhcC--CEEEEEECCHHHHHHHHHHcC-c--CCc-eEEEECCcccCCCCCCCeEEEE
Confidence 56799999999999875432 3234 4999999999887 4443322 1 344 99999999887654 6899999
Q ss_pred ec-cccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 420 SE-LLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 420 SE-llgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+. .+.++ ..+....++..+.+.|||||.++-..
T Consensus 123 s~~~l~h~-~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 123 SRDAILHL-SYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred EhhhHHhC-CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 93 22222 11234678999999999999988543
No 60
>PRK00811 spermidine synthase; Provisional
Probab=98.86 E-value=2e-08 Score=105.11 Aligned_cols=112 Identities=22% Similarity=0.326 Sum_probs=79.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc--C-CCCCcEEEEEecccccC--CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE--Q-WAQSDVTIVSEDMRTWN--APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n--~-~~~~nV~vi~~D~~~~~--~p~k~ 415 (626)
+.++||++|||.|.++..++ ++.+. .+|++||.++.++ .+++..... + +.+.+|+++.+|.+++- ..+++
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l---~~~~~-~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~y 151 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVL---KHPSV-EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSF 151 (283)
T ss_pred CCCEEEEEecCchHHHHHHH---cCCCC-CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcc
Confidence 35689999999999986544 33233 4999999999877 666554321 2 23334999999998863 24789
Q ss_pred cEEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccceee
Q psy17734 416 DIMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNYTSY 457 (626)
Q Consensus 416 DiIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~t~y 457 (626)
|+|++++...++..+. ..+++..+.+.|+|||+++-+...-+
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~ 195 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPF 195 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcc
Confidence 9999987544433322 26788889999999999997655433
No 61
>KOG1270|consensus
Probab=98.86 E-value=3.3e-09 Score=107.24 Aligned_cols=97 Identities=23% Similarity=0.232 Sum_probs=71.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC-----CCcEEEEEecccccCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA-----QSDVTIVSEDMRTWNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~-----~~nV~vi~~D~~~~~~p~k~ 415 (626)
.++.|||+|||+|+|+.-+++.+ ++|+|||.++.++ +|.+....+... -+ +++.+.|.++.. ++|
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlg------a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~-l~~~~~~~E~~~--~~f 159 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLG------AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYR-LEYEDTDVEGLT--GKF 159 (282)
T ss_pred CCceEEEeccCccccchhhHhhC------CeeEeecccHHHHHHHHHhhhcCchhcccccee-eehhhcchhhcc--ccc
Confidence 45789999999999997655544 3999999999887 666654333222 23 677778888776 469
Q ss_pred cEEEe-ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVS-ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVS-Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|.||+ |.+.+.- ..+++++...+.|||+|.++
T Consensus 160 DaVvcsevleHV~---dp~~~l~~l~~~lkP~G~lf 192 (282)
T KOG1270|consen 160 DAVVCSEVLEHVK---DPQEFLNCLSALLKPNGRLF 192 (282)
T ss_pred ceeeeHHHHHHHh---CHHHHHHHHHHHhCCCCceE
Confidence 99987 5554432 24678999999999999765
No 62
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.85 E-value=8.3e-09 Score=105.97 Aligned_cols=93 Identities=29% Similarity=0.299 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++.. +++ .|. .+|+|+|.++.++ .++++...++..+. +++..+|. +||+|++
T Consensus 119 ~~~~VLDiGcGsG~l~i~---~~~-~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~-~~~~~~~~-------~fD~Vva 185 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIA---AAK-LGA-KKVLAVDIDPQAVEAARENAELNGVELN-VYLPQGDL-------KADVIVA 185 (250)
T ss_pred CCCEEEEeCCcHHHHHHH---HHH-cCC-CeEEEEECCHHHHHHHHHHHHHcCCCce-EEEccCCC-------CcCEEEE
Confidence 467999999999998853 222 444 3799999999887 77888888887655 77666542 7999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.+.. +....++..+.+.|||||.++-.
T Consensus 186 ni~~-----~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 186 NILA-----NPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCcH-----HHHHHHHHHHHHhcCCCcEEEEE
Confidence 6542 22456777888999999998854
No 63
>PRK04457 spermidine synthase; Provisional
Probab=98.85 E-value=2.1e-08 Score=103.87 Aligned_cols=120 Identities=19% Similarity=0.216 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcE
Q psy17734 321 RYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDV 399 (626)
Q Consensus 321 ~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV 399 (626)
.|.+++...+... .+..+|||||||+|.++..+++.. . ..+|++||.+|.++ .+++....++..++ +
T Consensus 52 ~y~~~m~~~l~~~-------~~~~~vL~IG~G~G~l~~~l~~~~---p-~~~v~~VEidp~vi~~A~~~f~~~~~~~r-v 119 (262)
T PRK04457 52 AYTRAMMGFLLFN-------PRPQHILQIGLGGGSLAKFIYTYL---P-DTRQTAVEINPQVIAVARNHFELPENGER-F 119 (262)
T ss_pred HHHHHHHHHHhcC-------CCCCEEEEECCCHhHHHHHHHHhC---C-CCeEEEEECCHHHHHHHHHHcCCCCCCCc-e
Confidence 4667766544321 135689999999999986544332 1 25999999999877 55655444444455 9
Q ss_pred EEEEecccccC--CCCCccEEEeccccccCCCC-C-cHHHHHHHHHhcccCcEEEec
Q psy17734 400 TIVSEDMRTWN--APEKADIMVSELLGSFGDNE-L-SPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 400 ~vi~~D~~~~~--~p~k~DiIVSEllgsfg~~E-l-~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+++.+|.+++- .++++|+|+.+........+ + ..+++..+.+.|+|||+++-+
T Consensus 120 ~v~~~Da~~~l~~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 120 EVIEADGAEYIAVHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred EEEECCHHHHHHhCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 99999998752 34689999987543221111 2 268899999999999998754
No 64
>KOG1540|consensus
Probab=98.85 E-value=4.6e-08 Score=98.55 Aligned_cols=139 Identities=22% Similarity=0.240 Sum_probs=96.5
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHh----hccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhc--CCccEEEEEeCCHH
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQALL----DRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEA--NRKVRVYAVEKNMS 381 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al~----d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~--g~~~~V~AVE~np~ 381 (626)
++..|++=..+|+....++..-++ |..-......++..|||++||||-++...++..... ..+.+|+.+|.||.
T Consensus 62 V~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~ 141 (296)
T KOG1540|consen 62 VHHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPH 141 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHH
Confidence 455566555556655555443332 211112234467899999999999998877776531 12369999999998
Q ss_pred HH-HHHHHHHHcCCCCC-cEEEEEecccccCCC-CCccEEEeccccccCCCCC--cHHHHHHHHHhcccCcEEE
Q psy17734 382 AV-VGLKYKKEEQWAQS-DVTIVSEDMRTWNAP-EKADIMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 382 a~-~a~~~~~~n~~~~~-nV~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~I 450 (626)
+. ++++..++.++.+. .+.++.+|+++++.| ..+|+.++ .||...- .+..|..+.|.|||||++.
T Consensus 142 mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTi----afGIRN~th~~k~l~EAYRVLKpGGrf~ 211 (296)
T KOG1540|consen 142 MLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTI----AFGIRNVTHIQKALREAYRVLKPGGRFS 211 (296)
T ss_pred HHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEE----ecceecCCCHHHHHHHHHHhcCCCcEEE
Confidence 77 77776655555432 399999999999987 68999876 4554333 3668999999999999765
No 65
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.84 E-value=2.5e-08 Score=99.81 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC---------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN---------AP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~---------~p 412 (626)
++.+|||+|||+|.++..+++ ..+...+|+|||.+++ +... +|+++++|+++.. .+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~---~~~~~~~V~aVDi~~~----------~~~~--~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVT---QIGDKGRVIACDILPM----------DPIV--GVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHH---HcCCCceEEEEecccc----------cCCC--CcEEEecCCCChHHHHHHHHHhCC
Confidence 567899999999999865443 3333359999999982 1222 5999999999853 24
Q ss_pred CCccEEEeccccccCCCCCc---------HHHHHHHHHhcccCcEEEe
Q psy17734 413 EKADIMVSELLGSFGDNELS---------PECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~---------pe~L~~~~r~LkpgGi~IP 451 (626)
+++|+|+|+..-.+..+... ...|..+.++|||||.++-
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 68999999874444332211 2467888899999999864
No 66
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.83 E-value=2.1e-08 Score=104.17 Aligned_cols=111 Identities=19% Similarity=0.296 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCc
Q psy17734 319 YIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSD 398 (626)
Q Consensus 319 y~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~n 398 (626)
|....+++...+.+.+. .+..+|||+|||+|.++..++......+ ..+|+|+|.|+.++...+.. . . +
T Consensus 67 y~~l~~~i~~~l~~~l~-----~~~~~vLDiGcG~G~~~~~l~~~~~~~~-~~~v~giD~s~~~l~~A~~~----~-~-~ 134 (272)
T PRK11088 67 YQPLRDAVANLLAERLD-----EKATALLDIGCGEGYYTHALADALPEIT-TMQLFGLDISKVAIKYAAKR----Y-P-Q 134 (272)
T ss_pred hHHHHHHHHHHHHHhcC-----CCCCeEEEECCcCCHHHHHHHHhccccc-CCeEEEECCCHHHHHHHHHh----C-C-C
Confidence 44445555555544332 1346899999999999865544432211 13899999999887332221 1 2 4
Q ss_pred EEEEEecccccCCC-CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 399 VTIVSEDMRTWNAP-EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 399 V~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
++++.+|+.+++.+ +.||+|++-. .+..+..+.|.|||||.++
T Consensus 135 ~~~~~~d~~~lp~~~~sfD~I~~~~---------~~~~~~e~~rvLkpgG~li 178 (272)
T PRK11088 135 VTFCVASSHRLPFADQSLDAIIRIY---------APCKAEELARVVKPGGIVI 178 (272)
T ss_pred CeEEEeecccCCCcCCceeEEEEec---------CCCCHHHHHhhccCCCEEE
Confidence 89999999988764 6899999832 1334677889999999987
No 67
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.83 E-value=1.4e-08 Score=110.84 Aligned_cols=111 Identities=15% Similarity=0.190 Sum_probs=82.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC-CCcEEEEEecccccC-----CCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA-QSDVTIVSEDMRTWN-----APEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~-~~nV~vi~~D~~~~~-----~p~k 414 (626)
++++|||+|||+|.++.. |+. .|+ .+|++||.|+.++ .++++...|+++ ++ ++++++|+.++- ..++
T Consensus 220 ~g~rVLDlfsgtG~~~l~---aa~-~ga-~~V~~VD~s~~al~~a~~N~~~Ngl~~~~-v~~i~~D~~~~l~~~~~~~~~ 293 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVS---ALM-GGC-SQVVSVDTSQEALDIARQNVELNKLDLSK-AEFVRDDVFKLLRTYRDRGEK 293 (396)
T ss_pred CCCeEEEeccCCCHHHHH---HHh-CCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCc-EEEEEccHHHHHHHHHhcCCC
Confidence 457899999999999853 332 233 4999999999887 888888889986 45 999999998862 1358
Q ss_pred ccEEEeccccccCCCCC--------cHHHHHHHHHhcccCcEEEeccceeeEE
Q psy17734 415 ADIMVSELLGSFGDNEL--------SPECLYAAQKYLKEDGISIPYNYTSYIA 459 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El--------~pe~L~~~~r~LkpgGi~IP~~~t~y~a 459 (626)
||+||+++.- |..... ..+++..+.++|+|||+++-++++-++.
T Consensus 294 fDlVilDPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~ 345 (396)
T PRK15128 294 FDVIVMDPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT 345 (396)
T ss_pred CCEEEECCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC
Confidence 9999999873 433221 2234445678999999999887766553
No 68
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.81 E-value=3.6e-08 Score=98.96 Aligned_cols=100 Identities=19% Similarity=0.256 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIVS 420 (626)
+..+|||+|||+|.++..+++.+ ...+|+++|.++.+....+... .. +++++.+|+.+... +++||+|++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~----~~~~~~~~D~~~~~~~~~~~~~----~~-~~~~~~~d~~~~~~~~~~fD~vi~ 104 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF----PQAEFIALDISAGMLAQAKTKL----SE-NVQFICGDAEKLPLEDSSFDLIVS 104 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC----CCCcEEEEeChHHHHHHHHHhc----CC-CCeEEecchhhCCCCCCceeEEEE
Confidence 34689999999999986544433 2358999999997763333221 13 49999999998874 468999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..+-.+. .....++..+.+.|||||.++-.
T Consensus 105 ~~~l~~~--~~~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 105 NLALQWC--DDLSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred hhhhhhc--cCHHHHHHHHHHHcCCCcEEEEE
Confidence 6543222 12456889999999999988743
No 69
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.80 E-value=2.8e-08 Score=103.97 Aligned_cols=104 Identities=23% Similarity=0.251 Sum_probs=74.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSEL 422 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEl 422 (626)
.+|||+|||+|.++..++.... ..+|+|+|.|+.++ .++++...++..++ |+++++|+.+.....+||+|||++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~----~~~v~avDis~~al~~a~~n~~~~~~~~~-v~~~~~d~~~~~~~~~fDlIvsNP 190 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFP----NAEVIAVDISPDALAVAEENAEKNQLEHR-VEFIQSNLFEPLAGQKIDIIVSNP 190 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEECchhccCcCCCccEEEECC
Confidence 5899999999999865433321 25999999999887 88888888888766 999999987643234899999975
Q ss_pred ccc--------------------cCCCCC---cHHHHHHHHHhcccCcEEEec
Q psy17734 423 LGS--------------------FGDNEL---SPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 423 lgs--------------------fg~~El---~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.-- ++..++ ...++..+.++|+|||.++-.
T Consensus 191 Pyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284)
T TIGR00536 191 PYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284)
T ss_pred CCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 310 011111 124566777899999987633
No 70
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.80 E-value=2.6e-08 Score=108.48 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++.. +++..| .+|+|+|.|+.+. .+.+.. .+. +|++..+|.+++ +++||.|+|
T Consensus 167 ~g~rVLDIGcG~G~~a~~---la~~~g--~~V~giDlS~~~l~~A~~~~--~~l---~v~~~~~D~~~l--~~~fD~Ivs 234 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARY---AAEHYG--VSVVGVTISAEQQKLAQERC--AGL---PVEIRLQDYRDL--NGQFDRIVS 234 (383)
T ss_pred CCCEEEEeCCCccHHHHH---HHHHCC--CEEEEEeCCHHHHHHHHHHh--ccC---eEEEEECchhhc--CCCCCEEEE
Confidence 567999999999999854 444445 4999999999877 554443 233 389999999877 468999998
Q ss_pred cc-ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 EL-LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 El-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
-. +.+++ .+..+.++..+.+.|||||.++-+
T Consensus 235 ~~~~ehvg-~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 235 VGMFEHVG-PKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred eCchhhCC-hHHHHHHHHHHHHHcCCCcEEEEE
Confidence 43 22222 222467889999999999998765
No 71
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.80 E-value=2.5e-08 Score=99.01 Aligned_cols=97 Identities=30% Similarity=0.311 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|+|+.||-|+++.. +|+..+. .+|+|+|+||.|+ ..+++++.|++.++ |+++++|.+++.....+|-|+.
T Consensus 101 ~~e~VlD~faGIG~f~l~---~ak~~~~-~~V~A~d~Np~a~~~L~~Ni~lNkv~~~-i~~~~~D~~~~~~~~~~drvim 175 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLP---IAKHGKA-KRVYAVDLNPDAVEYLKENIRLNKVENR-IEVINGDAREFLPEGKFDRVIM 175 (200)
T ss_dssp TT-EEEETT-TTTTTHHH---HHHHT-S-SEEEEEES-HHHHHHHHHHHHHTT-TTT-EEEEES-GGG---TT-EEEEEE
T ss_pred cceEEEEccCCccHHHHH---HhhhcCc-cEEEEecCCHHHHHHHHHHHHHcCCCCe-EEEEcCCHHHhcCccccCEEEE
Confidence 567999999999999964 4442222 5899999999998 66778889999988 9999999999876789999998
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGIS 449 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~ 449 (626)
.++. .+.++|+.+.+.+|+||++
T Consensus 176 ~lp~------~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 176 NLPE------SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp --TS------SGGGGHHHHHHHEEEEEEE
T ss_pred CChH------HHHHHHHHHHHHhcCCcEE
Confidence 7653 4567899999999999875
No 72
>PRK04266 fibrillarin; Provisional
Probab=98.79 E-value=4.2e-08 Score=99.40 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=68.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHH-HHHHHHHcCCCCCcEEEEEeccccc----CCCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVV-GLKYKKEEQWAQSDVTIVSEDMRTW----NAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~-a~~~~~~n~~~~~nV~vi~~D~~~~----~~p~k~D 416 (626)
++.+|||+|||+|.++..++ +..+ ..+|||+|.++.++. ..+..+.. . ||+++.+|..+. ..++++|
T Consensus 72 ~g~~VlD~G~G~G~~~~~la---~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~--nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVS---DIVE-EGVVYAVEFAPRPMRELLEVAEER--K--NIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCEEEEEccCCCHHHHHHH---HhcC-CCeEEEEECCHHHHHHHHHHhhhc--C--CcEEEECCCCCcchhhhccccCC
Confidence 56799999999999986543 3333 249999999997763 43333222 2 699999998752 2346799
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|+++.. +.......+..+.++|||||.++-
T Consensus 144 ~i~~d~~----~p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 144 VIYQDVA----QPNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred EEEECCC----ChhHHHHHHHHHHHhcCCCcEEEE
Confidence 9998642 111112357889999999998654
No 73
>PRK14968 putative methyltransferase; Provisional
Probab=98.78 E-value=4.2e-08 Score=95.21 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++.. + .+|+|+|.++.+. .++++...+++.+++++++.+|+.+...+.++|+|++
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~----~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~ 96 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN----G--KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILF 96 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh----c--ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEE
Confidence 4578999999999998654433 3 4999999999876 6777777777764348999999877544458999998
Q ss_pred ccccccC---------------CCC----CcHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFG---------------DNE----LSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg---------------~~E----l~pe~L~~~~r~LkpgGi~IP 451 (626)
+..-... ... ....++..+.++|||||.++.
T Consensus 97 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 97 NPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred CCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 7532110 000 123467788899999998764
No 74
>PHA03412 putative methyltransferase; Provisional
Probab=98.77 E-value=2.8e-08 Score=100.41 Aligned_cols=104 Identities=18% Similarity=0.128 Sum_probs=73.9
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
+.+|||+|||+|.++..+++..... ...+|+|||+++.|. .++++. . ++.++++|+.+.....+||+|||+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~-~~~~V~aVEID~~Al~~Ar~n~------~-~~~~~~~D~~~~~~~~~FDlIIsN 121 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYA-KPREIVCVELNHTYYKLGKRIV------P-EATWINADALTTEFDTLFDMAISN 121 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccC-CCcEEEEEECCHHHHHHHHhhc------c-CCEEEEcchhcccccCCccEEEEC
Confidence 4689999999999986544432111 125999999999887 555432 2 389999999887766799999999
Q ss_pred cccccC------C-C---CCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 422 LLGSFG------D-N---ELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 422 llgsfg------~-~---El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+.-.-. . . +....++..+.+++++|+.++|...
T Consensus 122 PPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 122 PPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred CCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 852211 0 1 1124577888888999999999843
No 75
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.77 E-value=4.8e-08 Score=104.85 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=73.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSEL 422 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEl 422 (626)
.+|||+|||+|.++..+++. . ...+|+++|.|+.|+ .++++.+.|+.. .+++.+|+.+. .+++||+|||++
T Consensus 198 g~VLDlGCG~G~ls~~la~~---~-p~~~v~~vDis~~Al~~A~~nl~~n~l~---~~~~~~D~~~~-~~~~fDlIvsNP 269 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLARH---S-PKIRLTLSDVSAAALESSRATLAANGLE---GEVFASNVFSD-IKGRFDMIISNP 269 (342)
T ss_pred CeEEEeccCcCHHHHHHHHh---C-CCCEEEEEECCHHHHHHHHHHHHHcCCC---CEEEEcccccc-cCCCccEEEECC
Confidence 47999999999998643332 2 225899999999888 677777778763 66788887653 357899999987
Q ss_pred ccccCCCC---CcHHHHHHHHHhcccCcEEE
Q psy17734 423 LGSFGDNE---LSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 423 lgsfg~~E---l~pe~L~~~~r~LkpgGi~I 450 (626)
.-+.+... ...+++..+.++|||||.++
T Consensus 270 PFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~ 300 (342)
T PRK09489 270 PFHDGIQTSLDAAQTLIRGAVRHLNSGGELR 300 (342)
T ss_pred CccCCccccHHHHHHHHHHHHHhcCcCCEEE
Confidence 53322221 13567888899999999875
No 76
>KOG4300|consensus
Probab=98.76 E-value=9.4e-08 Score=93.54 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCC
Q psy17734 319 YIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQS 397 (626)
Q Consensus 319 y~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~ 397 (626)
.+.|++.|...+..++-. ....-||+||||||..-.+ -. -.+..+|+.+|.|+++. .+.+.++++.-.
T Consensus 57 ~~~ykrelFs~i~~~~gk----~~K~~vLEvgcGtG~Nfkf----y~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~-- 125 (252)
T KOG4300|consen 57 ADSYKRELFSGIYYFLGK----SGKGDVLEVGCGTGANFKF----YP-WKPINSVTCLDPNEKMEEIADKSAAEKKPL-- 125 (252)
T ss_pred HHHHHHHHHhhhHHHhcc----cCccceEEecccCCCCccc----cc-CCCCceEEEeCCcHHHHHHHHHHHhhccCc--
Confidence 355677777665543321 1223589999999987422 11 01225999999999887 666665555332
Q ss_pred cEE-EEEecccccC--CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 398 DVT-IVSEDMRTWN--APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 398 nV~-vi~~D~~~~~--~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+++ ++.++.+++. ...++|.||+-+. ....|...+.|....|+|+|||++|-
T Consensus 126 ~~~~fvva~ge~l~~l~d~s~DtVV~Tlv--LCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 126 QVERFVVADGENLPQLADGSYDTVVCTLV--LCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred ceEEEEeechhcCcccccCCeeeEEEEEE--EeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 488 9999999987 4589999998653 22345556789999999999999773
No 77
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.76 E-value=4.2e-08 Score=96.94 Aligned_cols=103 Identities=12% Similarity=0.187 Sum_probs=75.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CC-CCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---AP-EKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p-~k~Di 417 (626)
..+|||||||+|.++..+++. . ....|+|||.++.++ .+.++....++. ||+++++|+.++. .+ +.+|.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~---~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~--ni~~i~~d~~~~~~~~~~~~~~d~ 90 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQ---N-PDKNFLGIEIHTPIVLAANNKANKLGLK--NLHVLCGDANELLDKFFPDGSLSK 90 (194)
T ss_pred CceEEEeCCCccHHHHHHHHh---C-CCCCEEEEEeeHHHHHHHHHHHHHhCCC--CEEEEccCHHHHHHhhCCCCceeE
Confidence 468999999999998643332 2 225999999999776 667776677775 6999999998753 23 47999
Q ss_pred EEeccccccCC-----CCC-cHHHHHHHHHhcccCcEEEe
Q psy17734 418 MVSELLGSFGD-----NEL-SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 418 IVSEllgsfg~-----~El-~pe~L~~~~r~LkpgGi~IP 451 (626)
|++.....+.. +.. .++++..+.+.|||||.++-
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 98865432211 112 26789999999999999764
No 78
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.76 E-value=8.4e-08 Score=94.10 Aligned_cols=95 Identities=22% Similarity=0.252 Sum_probs=66.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC---------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN---------AP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~---------~p 412 (626)
++.+|||+|||+|.++..++... ....+|+|+|.|+++ .. . +++++++|+.+.. ..
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~---~~~~~v~~vDis~~~----------~~-~-~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQV---GGKGRVIAVDLQPMK----------PI-E-NVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHh---CCCceEEEEeccccc----------cC-C-CceEEEeeCCChhHHHHHHHHhCC
Confidence 57899999999999986544332 222489999999854 11 2 4899999998753 23
Q ss_pred CCccEEEeccccc-cCCC--C------CcHHHHHHHHHhcccCcEEEe
Q psy17734 413 EKADIMVSELLGS-FGDN--E------LSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 413 ~k~DiIVSEllgs-fg~~--E------l~pe~L~~~~r~LkpgGi~IP 451 (626)
+++|+|+++.... .+.. . ....++..+.+.|+|||.++-
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 5799999864221 1111 1 124578888999999999774
No 79
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.75 E-value=1.3e-07 Score=93.34 Aligned_cols=100 Identities=20% Similarity=0.176 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-C-CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-N-APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~-~p~k~DiI 418 (626)
++.+|||+|||+|.++..+++.. . ..+|+|||.++.+. .+.++.+.++.. +|+++.+|+.+. . ....+|.+
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~---~-~~~V~~vD~s~~~~~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~d~v 113 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLC---P-KGRVIAIERDEEVVNLIRRNCDRFGVK--NVEVIEGSAPECLAQLAPAPDRV 113 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHC---C-CCEEEEEeCCHHHHHHHHHHHHHhCCC--CeEEEECchHHHHhhCCCCCCEE
Confidence 56799999999999986543322 1 25999999999877 666666667764 499999998752 2 22346776
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+.+. .+....++..+.+.|+|||.++-..
T Consensus 114 ~~~~------~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 114 CIEG------GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred EEEC------CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 5531 2234678899999999999987553
No 80
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.75 E-value=1e-07 Score=96.97 Aligned_cols=103 Identities=23% Similarity=0.192 Sum_probs=73.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
+.+|||+|||+|.++..++.. .. ..+|+|+|.++.++ .++++...+++. +++++++|..+....+++|+|+++
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~---~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~Vi~n 161 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKE---RP-DARVTAVDISPEALAVARKNAARLGLD--NVTFLQSDWFEPLPGGKFDLIVSN 161 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHH---CC-CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEECchhccCcCCceeEEEEC
Confidence 458999999999998654432 22 25999999999887 677777777775 499999999774445789999997
Q ss_pred ccccc-C-----CC-----CC-------------cHHHHHHHHHhcccCcEEEe
Q psy17734 422 LLGSF-G-----DN-----EL-------------SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 422 llgsf-g-----~~-----El-------------~pe~L~~~~r~LkpgGi~IP 451 (626)
+.-.. . .. |. ...++..+.++|+|||.++-
T Consensus 162 pPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 162 PPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred CCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 64211 0 00 00 12456778889999998764
No 81
>PRK08317 hypothetical protein; Provisional
Probab=98.75 E-value=1.6e-07 Score=94.00 Aligned_cols=103 Identities=16% Similarity=0.213 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++ ...+...+|+|+|.++.+. .+++. . ..... +++++.+|+.+++.+ .+||+|+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a---~~~~~~~~v~~~d~~~~~~~~a~~~-~-~~~~~-~~~~~~~d~~~~~~~~~~~D~v~ 92 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELA---RRVGPEGRVVGIDRSEAMLALAKER-A-AGLGP-NVEFVRGDADGLPFPDGSFDAVR 92 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHH---HhcCCCcEEEEEeCCHHHHHHHHHH-h-hCCCC-ceEEEecccccCCCCCCCceEEE
Confidence 56799999999999886433 3332235999999999876 44443 2 22233 499999999887654 6899999
Q ss_pred eccc-cccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 420 SELL-GSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 420 SEll-gsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
+..+ .+. .....++..+.+.|||||.++-..
T Consensus 93 ~~~~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 93 SDRVLQHL---EDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred Eechhhcc---CCHHHHHHHHHHHhcCCcEEEEEe
Confidence 8543 222 124568899999999999877543
No 82
>PLN02366 spermidine synthase
Probab=98.74 E-value=1.2e-07 Score=100.19 Aligned_cols=114 Identities=14% Similarity=0.224 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCCCCCcEEEEEecccccC--C-CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQWAQSDVTIVSEDMRTWN--A-PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~~~~nV~vi~~D~~~~~--~-p~k~ 415 (626)
+.++||+||||.|.++..+++ +.+. .+|+.||+++..+ .+++.... .++.+.+|+++.+|.+++- . .+++
T Consensus 91 ~pkrVLiIGgG~G~~~rellk---~~~v-~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIAR---HSSV-EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHh---CCCC-CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCC
Confidence 357899999999999865443 2222 4899999999776 66665432 2455545999999987752 2 3689
Q ss_pred cEEEeccccccCCCC-C-cHHHHHHHHHhcccCcEEEeccceeeEE
Q psy17734 416 DIMVSELLGSFGDNE-L-SPECLYAAQKYLKEDGISIPYNYTSYIA 459 (626)
Q Consensus 416 DiIVSEllgsfg~~E-l-~pe~L~~~~r~LkpgGi~IP~~~t~y~a 459 (626)
|+|+++.....+... + ..++++.+.+.|+|||+++-+....+..
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~ 212 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLH 212 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccc
Confidence 999998754333222 2 3678999999999999999887665554
No 83
>PRK06202 hypothetical protein; Provisional
Probab=98.74 E-value=7.6e-08 Score=97.50 Aligned_cols=103 Identities=17% Similarity=0.143 Sum_probs=67.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIV 419 (626)
++.+|||+|||+|.++..++...+..|...+|+|+|.++.++ .+++....+ ++++...+..++.. ++++|+|+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~l~~~~~~fD~V~ 134 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP-----GVTFRQAVSDELVAEGERFDVVT 134 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC-----CCeEEEEecccccccCCCccEEE
Confidence 457899999999999876665554444445999999999887 444332211 36666666666543 47899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+...-+....+..++++..+.+.++ ++++|
T Consensus 135 ~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i 164 (232)
T PRK06202 135 SNHFLHHLDDAEVVRLLADSAALAR-RLVLH 164 (232)
T ss_pred ECCeeecCChHHHHHHHHHHHHhcC-eeEEE
Confidence 9643222222223568888888887 44443
No 84
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.74 E-value=6.8e-08 Score=108.10 Aligned_cols=101 Identities=19% Similarity=0.182 Sum_probs=74.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||||||+|.++..+ ++..+ .+|+|+|.++.++ .++++. .+...+ |+++.+|+.+...+ ++||+|+
T Consensus 266 ~~~~vLDiGcG~G~~~~~l---a~~~~--~~v~gvDiS~~~l~~A~~~~--~~~~~~-v~~~~~d~~~~~~~~~~fD~I~ 337 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYM---AENFD--VHVVGIDLSVNMISFALERA--IGRKCS-VEFEVADCTKKTYPDNSFDVIY 337 (475)
T ss_pred CCCEEEEEeccCCHHHHHH---HHhcC--CEEEEEECCHHHHHHHHHHh--hcCCCc-eEEEEcCcccCCCCCCCEEEEE
Confidence 4678999999999987543 33334 4999999999877 554443 244455 99999999988764 5799999
Q ss_pred ecc-ccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 420 SEL-LGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 420 SEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
|.- +.++ ...+.++..+.+.|||||.++-..
T Consensus 338 s~~~l~h~---~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 338 SRDTILHI---QDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred ECCccccc---CCHHHHHHHHHHHcCCCeEEEEEE
Confidence 942 2222 224578899999999999988553
No 85
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.73 E-value=4.9e-08 Score=97.94 Aligned_cols=99 Identities=20% Similarity=0.151 Sum_probs=70.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ + .+ .+|+|+|.++.++ .+++....++..++ ++++.+|+.+.. +++|+|++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la---~-~~--~~v~gvD~s~~~i~~a~~~~~~~~~~~~-i~~~~~d~~~~~--~~fD~ii~ 125 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELA---K-RG--AIVKAVDISEQMVQMARNRAQGRDVAGN-VEFEVNDLLSLC--GEFDIVVC 125 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHH---H-CC--CEEEEEECCHHHHHHHHHHHHhcCCCCc-eEEEECChhhCC--CCcCEEEE
Confidence 56799999999999986433 2 23 4999999999887 55665555655455 999999998876 78999988
Q ss_pred c-cccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 E-LLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 E-llgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
- .+-++ ..+.....+..+.+.+++++++.
T Consensus 126 ~~~l~~~-~~~~~~~~l~~i~~~~~~~~~i~ 155 (219)
T TIGR02021 126 MDVLIHY-PASDMAKALGHLASLTKERVIFT 155 (219)
T ss_pred hhHHHhC-CHHHHHHHHHHHHHHhCCCEEEE
Confidence 3 33222 22334556777777888766555
No 86
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.73 E-value=5.5e-08 Score=96.66 Aligned_cols=101 Identities=11% Similarity=0.077 Sum_probs=71.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|.++..+ +++. + .+|++||.++.++ .++++++.++.. +++++++|+.++- ..++||+|
T Consensus 53 ~~~~vLDl~~GsG~l~l~~---lsr~-a-~~V~~vE~~~~a~~~a~~Nl~~~~~~--~v~~~~~D~~~~l~~~~~~fDlV 125 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEA---LSRY-A-AGATLLEMDRAVAQQLIKNLATLKAG--NARVVNTNALSFLAQPGTPHNVV 125 (199)
T ss_pred CCCEEEEcCCCccHHHHHH---HHcC-C-CEEEEEECCHHHHHHHHHHHHHhCCC--cEEEEEchHHHHHhhcCCCceEE
Confidence 3568999999999999643 2222 2 4999999999887 777787778764 4999999998742 22469999
Q ss_pred EeccccccCCCCCcHHHHHHHHH--hcccCcEEEec
Q psy17734 419 VSELLGSFGDNELSPECLYAAQK--YLKEDGISIPY 452 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r--~LkpgGi~IP~ 452 (626)
++++.-. ....+++++.+.. +|+|+|+++-+
T Consensus 126 ~~DPPy~---~g~~~~~l~~l~~~~~l~~~~iv~ve 158 (199)
T PRK10909 126 FVDPPFR---KGLLEETINLLEDNGWLADEALIYVE 158 (199)
T ss_pred EECCCCC---CChHHHHHHHHHHCCCcCCCcEEEEE
Confidence 9999721 1123556665543 46777776633
No 87
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.73 E-value=1.2e-07 Score=94.61 Aligned_cols=93 Identities=22% Similarity=0.205 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-CCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-NAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~~p~k~DiIV 419 (626)
++.+|||+|||+|.++..++... .+|+++|.++.+. .++++..+.++. +|+++.+|..+. ...++||+|+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~------~~v~~vd~~~~~~~~a~~~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~I~ 149 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV------RRVFSVERIKTLQWEAKRRLKQLGLH--NVSVRHGDGWKGWPAYAPFDRIL 149 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh------CEEEEEeCCHHHHHHHHHHHHHCCCC--ceEEEECCcccCCCcCCCcCEEE
Confidence 56799999999999985433322 2899999999876 666776677775 599999998663 2236899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+.. ..+.+.....+.|+|||.++
T Consensus 150 ~~~--------~~~~~~~~l~~~L~~gG~lv 172 (212)
T PRK00312 150 VTA--------AAPEIPRALLEQLKEGGILV 172 (212)
T ss_pred Ecc--------CchhhhHHHHHhcCCCcEEE
Confidence 842 11223455678899999876
No 88
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.72 E-value=5.6e-08 Score=100.75 Aligned_cols=137 Identities=16% Similarity=0.165 Sum_probs=89.5
Q ss_pred hhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCch----HHHHHHHHHhhc-CCccEEEEEeCCHHHH-HH
Q psy17734 312 FEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGP----LVTASLNAAKEA-NRKVRVYAVEKNMSAV-VG 385 (626)
Q Consensus 312 fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~----Ls~~al~Aa~~~-g~~~~V~AVE~np~a~-~a 385 (626)
|-.|+..++..++.+...+.... ...++.+|+|+|||||- +++.++++.... +.+.+|+|+|.|+.++ .|
T Consensus 73 FfR~~~~~~~l~~~vlp~l~~~~----~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~A 148 (264)
T smart00138 73 FFRESKHFEALEEKVLPLLIASR----RHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKA 148 (264)
T ss_pred ccCCcHHHHHHHHHHhHHHHHhc----CCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHH
Confidence 66777776666666555443321 11245799999999995 555444443221 1136999999999887 55
Q ss_pred HHHHH----Hc----------------------CCCCCcEEEEEecccccCC-CCCccEEEec-cccccCCCCCcHHHHH
Q psy17734 386 LKYKK----EE----------------------QWAQSDVTIVSEDMRTWNA-PEKADIMVSE-LLGSFGDNELSPECLY 437 (626)
Q Consensus 386 ~~~~~----~n----------------------~~~~~nV~vi~~D~~~~~~-p~k~DiIVSE-llgsfg~~El~pe~L~ 437 (626)
++.+- .. +..+. |++..+|+.+... .++||+|+|- .+.+| +.+....++.
T Consensus 149 r~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~-V~F~~~dl~~~~~~~~~fD~I~crnvl~yf-~~~~~~~~l~ 226 (264)
T smart00138 149 RAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKER-VRFAKHNLLAESPPLGDFDLIFCRNVLIYF-DEPTQRKLLN 226 (264)
T ss_pred HcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCc-CEEeeccCCCCCCccCCCCEEEechhHHhC-CHHHHHHHHH
Confidence 44210 00 11234 9999999998765 4789999994 44443 3344467899
Q ss_pred HHHHhcccCcEEEeccc
Q psy17734 438 AAQKYLKEDGISIPYNY 454 (626)
Q Consensus 438 ~~~r~LkpgGi~IP~~~ 454 (626)
.+.+.|||||.++-...
T Consensus 227 ~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 227 RFAEALKPGGYLFLGHS 243 (264)
T ss_pred HHHHHhCCCeEEEEECc
Confidence 99999999999875543
No 89
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.71 E-value=3.4e-09 Score=92.53 Aligned_cols=94 Identities=23% Similarity=0.271 Sum_probs=55.4
Q ss_pred EEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc---CCCCCccEEEec-
Q psy17734 347 MVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW---NAPEKADIMVSE- 421 (626)
Q Consensus 347 LDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~---~~p~k~DiIVSE- 421 (626)
||+|||+|.++..++.... ..+++++|.|+.++ .+++.....+.. +++.+..+..+. ..+++||+|++-
T Consensus 1 LdiGcG~G~~~~~l~~~~~----~~~~~~~D~s~~~l~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP----DARYTGVDISPSMLERARERLAELGND--NFERLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-----EEEEEEEESSSSTTSTTCCCHHHCT-----EEEEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCC----CCEEEEEECCHHHHHHHHHHhhhcCCc--ceeEEEeecCChhhcccccccceehhhh
Confidence 7999999999976555431 25999999999887 566555554432 245555444443 223599999884
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEE
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGIS 449 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~ 449 (626)
.+.++ +...+++..+.+.|||||++
T Consensus 75 vl~~l---~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHL---EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS-----S-HHHHHHHHTTT-TSS-EE
T ss_pred hHhhh---hhHHHHHHHHHHHcCCCCCC
Confidence 33333 55678999999999999985
No 90
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.70 E-value=1.4e-07 Score=94.83 Aligned_cols=104 Identities=16% Similarity=0.171 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++... +...+|+++|.++.+. .+.+....+++... ++++.+|+.+...+ +++|+|+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~---~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~D~I~ 126 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAV---GKTGEVVGLDFSEGMLAVGREKLRDLGLSGN-VEFVQGDAEALPFPDNSFDAVT 126 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHc---CCCCeEEEEeCCHHHHHHHHHhhcccccccC-eEEEecccccCCCCCCCccEEE
Confidence 45789999999999986544433 2125999999999776 55555555555555 99999999887653 6899998
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+... +......+.+++.+.+.|+|||.++-
T Consensus 127 ~~~~--l~~~~~~~~~l~~~~~~L~~gG~li~ 156 (239)
T PRK00216 127 IAFG--LRNVPDIDKALREMYRVLKPGGRLVI 156 (239)
T ss_pred Eecc--cccCCCHHHHHHHHHHhccCCcEEEE
Confidence 7321 11122346789999999999998763
No 91
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.70 E-value=5e-08 Score=114.09 Aligned_cols=106 Identities=12% Similarity=0.110 Sum_probs=81.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC-CCcEEEEEecccccC--CCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA-QSDVTIVSEDMRTWN--APEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~-~~nV~vi~~D~~~~~--~p~k~Di 417 (626)
++++|||+|||+|.++..++. .|+ .+|++||.|+.++ .++++.+.|++. ++ ++++++|+.++- ..++||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~----~Ga-~~V~~vD~s~~al~~a~~N~~~ng~~~~~-v~~i~~D~~~~l~~~~~~fDl 611 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAAL----GGA-KSTTTVDMSNTYLEWAERNFALNGLSGRQ-HRLIQADCLAWLKEAREQFDL 611 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHH----CCC-CEEEEEeCCHHHHHHHHHHHHHhCCCccc-eEEEEccHHHHHHHcCCCcCE
Confidence 357899999999999965443 243 3899999999887 888899899986 56 999999998753 2468999
Q ss_pred EEeccccccCCCCC----------cHHHHHHHHHhcccCcEEEeccc
Q psy17734 418 MVSELLGSFGDNEL----------SPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 418 IVSEllgsfg~~El----------~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
||+++. +|...+. ..+++..+.+.|+|||+++-+..
T Consensus 612 IilDPP-~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 612 IFIDPP-TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred EEECCC-CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 999976 3332221 24566777889999999876544
No 92
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.69 E-value=1.1e-07 Score=105.65 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=78.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|..+..++.... ...+|+|+|.|+.+. .++++.++.+.. +|+++.+|++++..+++||.|+.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~---~~~~V~avD~s~~~l~~~~~~~~~~g~~--~v~~~~~Da~~~~~~~~fD~Vl~ 324 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQ---NRGQITAVDRYPQKLEKIRSHASALGIT--IIETIEGDARSFSPEEQPDAILL 324 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHHHHHhCCC--eEEEEeCcccccccCCCCCEEEE
Confidence 567999999999998865444332 124999999999877 666777777774 59999999998865578999998
Q ss_pred ccc----cccCCC-C----C-----------cHHHHHHHHHhcccCcEEEeccc
Q psy17734 421 ELL----GSFGDN-E----L-----------SPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 421 Ell----gsfg~~-E----l-----------~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+.. |.+..+ + . ..++|..+.+.|||||+++-+.+
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 753 211111 0 0 12468888899999999986443
No 93
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.69 E-value=7.4e-08 Score=108.60 Aligned_cols=105 Identities=20% Similarity=0.214 Sum_probs=75.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
..+|||+|||+|.++..++... .+ .+|+|+|.|+.|+ .++++.+.++..++ |+++++|+.+....++||+|||+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~--p~--~~v~avDis~~al~~A~~N~~~~~l~~~-v~~~~~D~~~~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL--PN--ANVIATDISLDAIEVAKSNAIKYEVTDR-IQIIHSNWFENIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC--CC--CeEEEEECCHHHHHHHHHHHHHcCCccc-eeeeecchhhhCcCCCccEEEEC
Confidence 4689999999999986433321 12 5999999999887 78888888888777 99999998654334689999997
Q ss_pred cccc---------------------cCCCCCc---HHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGS---------------------FGDNELS---PECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgs---------------------fg~~El~---pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.-. ++...++ ..++..+.++|+|||.++-.
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 5310 1111111 23556677899999998754
No 94
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.69 E-value=1.1e-07 Score=97.01 Aligned_cols=104 Identities=16% Similarity=0.115 Sum_probs=79.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-------APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-------~p~ 413 (626)
+.++|||+|||+|.-+..++.+.. ...+|+++|.++.+. .++++.+.+++.++ |+++.+|..+.- ..+
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~---~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~-i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALP---EDGRITAIDIDKEAYEVGLEFIKKAGVDHK-INFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEEccHHHHHHHHHhCCCCC
Confidence 457899999999987654444322 125999999999776 88899999999887 999999998751 136
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+||+|+.+.- .+..+++++.+.+.|+|||+++-+..
T Consensus 144 ~fD~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 144 EFDFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CCCEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 8999977421 12346788888899999999987654
No 95
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.68 E-value=2e-07 Score=91.88 Aligned_cols=104 Identities=13% Similarity=0.002 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-C-C--C-CCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-N-A--P-EKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~-~--p-~k~ 415 (626)
++.+|||++||+|.++.. |+.+ |+ .+|++||.++.+. .++++++.++..++ ++++++|..++ . . . ..+
T Consensus 49 ~g~~vLDLfaGsG~lgle---a~sr-ga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~-~~~~~~D~~~~l~~~~~~~~~~ 122 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEE---ALSR-GA-KVAFLEEDDRKANQTLKENLALLKSGEQ-AEVVRNSALRALKFLAKKPTFD 122 (189)
T ss_pred CCCEEEEecCCCcHHHHH---HHhC-CC-CEEEEEeCCHHHHHHHHHHHHHhCCccc-EEEEehhHHHHHHHhhccCCCc
Confidence 467899999999999954 4443 33 4899999999887 67788888888766 99999999653 1 1 1 247
Q ss_pred cEEEeccccccCCCCCcHHHHHHHH--HhcccCcEEEeccc
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQ--KYLKEDGISIPYNY 454 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~--r~LkpgGi~IP~~~ 454 (626)
|+|+..+. |. ....++++..+. .+|+++|++|-...
T Consensus 123 dvv~~DPP--y~-~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 123 NVIYLDPP--FF-NGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred eEEEECcC--CC-CCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 88888774 32 233466666554 36889998885543
No 96
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.68 E-value=1.2e-07 Score=101.35 Aligned_cols=101 Identities=15% Similarity=0.136 Sum_probs=75.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||.|||+|.+... ++. .+ .+|+|+|.++.++ .++++.+..+.. +++++.+|+++++.+ +++|+||
T Consensus 182 ~g~~vLDp~cGtG~~lie---aa~-~~--~~v~g~Di~~~~~~~a~~nl~~~g~~--~i~~~~~D~~~l~~~~~~~D~Iv 253 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIE---AGL-MG--AKVIGCDIDWKMVAGARINLEHYGIE--DFFVKRGDATKLPLSSESVDAIA 253 (329)
T ss_pred CcCEEEECCCCCCHHHHH---HHH-hC--CeEEEEcCCHHHHHHHHHHHHHhCCC--CCeEEecchhcCCcccCCCCEEE
Confidence 567999999999998753 333 34 4999999999876 677777777776 489999999998764 6899999
Q ss_pred eccc-cccC-C-CC----CcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELL-GSFG-D-NE----LSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEll-gsfg-~-~E----l~pe~L~~~~r~LkpgGi~I 450 (626)
+++. |-.. . .+ ....++..+.+.|||||.++
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv 291 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIV 291 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEE
Confidence 9874 2111 1 11 12567888899999999765
No 97
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1.6e-07 Score=97.63 Aligned_cols=98 Identities=21% Similarity=0.216 Sum_probs=74.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSEL 422 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEl 422 (626)
..|||+|||.|+|+.. +++... ..+|+-+|.|..|+ .++++++.|+.. +..++.+|.-+--. ++||.|||++
T Consensus 160 ~~vlDlGCG~Gvlg~~---la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~--~~~v~~s~~~~~v~-~kfd~IisNP 232 (300)
T COG2813 160 GKVLDLGCGYGVLGLV---LAKKSP-QAKLTLVDVNARAVESARKNLAANGVE--NTEVWASNLYEPVE-GKFDLIISNP 232 (300)
T ss_pred CcEEEeCCCccHHHHH---HHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCC--ccEEEEeccccccc-ccccEEEeCC
Confidence 3899999999999954 444333 36999999999998 788888889886 34677777655333 4999999999
Q ss_pred ccccCCCCCcH----HHHHHHHHhcccCcEE
Q psy17734 423 LGSFGDNELSP----ECLYAAQKYLKEDGIS 449 (626)
Q Consensus 423 lgsfg~~El~p----e~L~~~~r~LkpgGi~ 449 (626)
.-+-|-. ... +++.++.++|++||.+
T Consensus 233 Pfh~G~~-v~~~~~~~~i~~A~~~L~~gGeL 262 (300)
T COG2813 233 PFHAGKA-VVHSLAQEIIAAAARHLKPGGEL 262 (300)
T ss_pred CccCCcc-hhHHHHHHHHHHHHHhhccCCEE
Confidence 7543322 234 7889999999999974
No 98
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.67 E-value=1.1e-07 Score=80.59 Aligned_cols=101 Identities=21% Similarity=0.222 Sum_probs=72.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC--CCCccEEEecc
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--PEKADIMVSEL 422 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~k~DiIVSEl 422 (626)
+|+|+|||.|.++..++. ..+ .+++++|.++.+....+.........+ ++++.+|..+... +.++|++++..
T Consensus 1 ~ildig~G~G~~~~~~~~---~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS---GPG--ARVTGVDISPVALELARKAAAALLADN-VEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc---CCC--CEEEEEeCCHHHHHHHHHHHhcccccc-eEEEEcChhhhccccCCceEEEEEcc
Confidence 379999999999864433 122 599999999988754442333333344 9999999998863 57899999865
Q ss_pred ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 423 LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 423 lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+.... .+....++..+.+.|+|+|.++..
T Consensus 75 ~~~~~-~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL-VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 43221 333466788888999999998865
No 99
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.67 E-value=1.7e-07 Score=104.24 Aligned_cols=103 Identities=20% Similarity=0.174 Sum_probs=76.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|..+..++... +.+.+|+|+|.++.++ .++++.++++.. +|+++++|++++. .+++||+|
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~---~~~~~v~avDi~~~~l~~~~~n~~~~g~~--~v~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELL---KNTGKVVALDIHEHKLKLIEENAKRLGLT--NIETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCCcccccchhcccCCEE
Confidence 56789999999999996544432 2225999999999877 677777778875 5999999998864 34689999
Q ss_pred EeccccccCCCC---------------------CcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNE---------------------LSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~E---------------------l~pe~L~~~~r~LkpgGi~I 450 (626)
+++..-+ +.+. ...++|..+.++|||||.++
T Consensus 325 l~D~Pcs-g~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv 376 (444)
T PRK14902 325 LVDAPCS-GLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV 376 (444)
T ss_pred EEcCCCC-CCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 9986422 1110 01246788889999999998
No 100
>PRK01581 speE spermidine synthase; Validated
Probab=98.67 E-value=1.5e-07 Score=100.79 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHH-----HHHcCCCCCcEEEEEecccccC--CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKY-----KKEEQWAQSDVTIVSEDMRTWN--APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~-----~~~n~~~~~nV~vi~~D~~~~~--~p~ 413 (626)
...+||++|||+|.....+++ ..+. .+|++||.++.++ ++++. ..+..+.+.+|+++.+|.+++- ..+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk---~~~v-~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~ 225 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLK---YETV-LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSS 225 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHh---cCCC-CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCC
Confidence 346899999999997754443 2222 4999999999877 55531 1223343335999999999863 346
Q ss_pred CccEEEeccccccC--CCCC-cHHHHHHHHHhcccCcEEEeccc
Q psy17734 414 KADIMVSELLGSFG--DNEL-SPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 414 k~DiIVSEllgsfg--~~El-~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
+||+|++++....+ ...+ ..+++..+.+.|+|||+++-+..
T Consensus 226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 89999998754322 1222 36788899999999999887643
No 101
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.2e-07 Score=99.14 Aligned_cols=99 Identities=24% Similarity=0.254 Sum_probs=71.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccc
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELL 423 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEll 423 (626)
+|||+|||+|.++..++... ...+|+|+|.|+.|+ .|+++...++. .+ +.++.+|..+-- .++||+|||++.
T Consensus 113 ~ilDlGTGSG~iai~la~~~----~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~-~~~~~~dlf~~~-~~~fDlIVsNPP 185 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG----PDAEVIAVDISPDALALARENAERNGL-VR-VLVVQSDLFEPL-RGKFDLIVSNPP 185 (280)
T ss_pred cEEEecCChHHHHHHHHhhC----cCCeEEEEECCHHHHHHHHHHHHHcCC-cc-EEEEeeeccccc-CCceeEEEeCCC
Confidence 79999999999996443332 235999999999998 88999999998 54 888887654422 248999999874
Q ss_pred cccCCCC---Cc----------------------HHHHHHHHHhcccCcEEEec
Q psy17734 424 GSFGDNE---LS----------------------PECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 424 gsfg~~E---l~----------------------pe~L~~~~r~LkpgGi~IP~ 452 (626)
+...+ .+ ..+++.+.++|+|||.++-.
T Consensus 186 --Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 186 --YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred --CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 11111 11 23455667889998887644
No 102
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.66 E-value=8.2e-08 Score=107.44 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc--cCCC-CCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT--WNAP-EKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~--~~~p-~k~DiI 418 (626)
++.+|||+|||+|.++..++.. + .+|+|||.++.++...+. .++... +++++++|+.+ ++.+ ++||+|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~----~--~~v~giD~s~~~l~~a~~--~~~~~~-~i~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK----A--GQVIALDFIESVIKKNES--INGHYK-NVKFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh----C--CEEEEEeCCHHHHHHHHH--HhccCC-ceEEEEecccccccCCCCCCEEEE
Confidence 4568999999999998654332 2 399999999987733222 233333 49999999974 3333 689999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
++...-++...+...+++..+.+.|||||+++...
T Consensus 108 ~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 108 FSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred ehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 99875555444445678899999999999987653
No 103
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=9.9e-08 Score=92.58 Aligned_cols=90 Identities=24% Similarity=0.276 Sum_probs=65.6
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
+.++++|+|+|||||.|+..++ ..|+ .+|+|||.++.+. +++++..+ +.+. |.++.+|++++. .++|.+
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~----~lGa-~~V~~vdiD~~a~ei~r~N~~~--l~g~-v~f~~~dv~~~~--~~~dtv 112 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAA----LLGA-SRVLAVDIDPEALEIARANAEE--LLGD-VEFVVADVSDFR--GKFDTV 112 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHH----hcCC-cEEEEEecCHHHHHHHHHHHHh--hCCc-eEEEEcchhhcC--CccceE
Confidence 3477899999999999995433 3454 5999999999988 66666655 4455 999999999987 578999
Q ss_pred Eeccc-cccCCCCCc-HHHHHHHHH
Q psy17734 419 VSELL-GSFGDNELS-PECLYAAQK 441 (626)
Q Consensus 419 VSEll-gsfg~~El~-pe~L~~~~r 441 (626)
|.++. |+. .+.. -++|+.+-+
T Consensus 113 imNPPFG~~--~rhaDr~Fl~~Ale 135 (198)
T COG2263 113 IMNPPFGSQ--RRHADRPFLLKALE 135 (198)
T ss_pred EECCCCccc--cccCCHHHHHHHHH
Confidence 99874 443 2233 345555433
No 104
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.64 E-value=1.5e-07 Score=99.47 Aligned_cols=105 Identities=19% Similarity=0.167 Sum_probs=75.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE-e
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV-S 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV-S 420 (626)
+..+|||||||+|.++..+++.. .+.+++++|..+....+++++...+..++ |+++.+|+.+...+. +|+++ +
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~----p~~~~~~~D~~~~~~~a~~~~~~~gl~~r-v~~~~~d~~~~~~~~-~D~v~~~ 222 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHF----PELDSTILNLPGAIDLVNENAAEKGVADR-MRGIAVDIYKESYPE-ADAVLFC 222 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHC----CCCEEEEEecHHHHHHHHHHHHhCCccce-EEEEecCccCCCCCC-CCEEEeE
Confidence 45799999999999986444332 22589999974333477777777888887 999999998765544 79875 4
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
..+..+. .+....++..+.+.|||||.++-..
T Consensus 223 ~~lh~~~-~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 223 RILYSAN-EQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred hhhhcCC-hHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4333221 1223567889999999999987554
No 105
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.64 E-value=2.1e-07 Score=96.28 Aligned_cols=103 Identities=20% Similarity=0.203 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++... . ..+|+|+|.++.++ .+.++.. +..... ++++.+|+.+...+++||+||+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~---~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~-i~~~~~d~~~~~~~~~fD~Iv~ 181 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER---P-DAEVTAVDISPEALAVARRNAK-HGLGAR-VEFLQGDWFEPLPGGRFDLIVS 181 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC---C-CCEEEEEECCHHHHHHHHHHHH-hCCCCc-EEEEEccccCcCCCCceeEEEE
Confidence 45689999999999986544332 1 25999999999887 5555554 344444 9999999866433478999999
Q ss_pred ccccccCC------------CC----------C---cHHHHHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGD------------NE----------L---SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~------------~E----------l---~pe~L~~~~r~LkpgGi~IP 451 (626)
++.- ... +| + ...++..+.++|||||.++-
T Consensus 182 npPy-~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 182 NPPY-IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred CCCc-CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 7541 110 00 1 12355666789999998774
No 106
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.64 E-value=1.7e-07 Score=97.09 Aligned_cols=105 Identities=19% Similarity=0.112 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIV 419 (626)
++.+|||+|||+|..+..++.. .+.+.+|+|+|.++.+. .+++++++++.. ||+++++|++++.. .++||.|+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~---~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~--~v~~~~~D~~~~~~~~~~fD~Vl 145 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISAL---MKNEGAIVANEFSKSRTKVLIANINRCGVL--NVAVTNFDGRVFGAAVPKFDAIL 145 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHH---cCCCCEEEEEcCCHHHHHHHHHHHHHcCCC--cEEEecCCHHHhhhhccCCCEEE
Confidence 5679999999999999654333 22224999999999776 677777778774 59999999987653 25799999
Q ss_pred eccccccC----CC-C---------------CcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFG----DN-E---------------LSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg----~~-E---------------l~pe~L~~~~r~LkpgGi~IP 451 (626)
.+..-+.. .+ + ...++|..+.++|||||+++=
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvY 197 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVY 197 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 88653211 01 0 012467788889999999983
No 107
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.63 E-value=2.3e-07 Score=102.78 Aligned_cols=109 Identities=17% Similarity=0.070 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-----CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-----APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-----~p~k~ 415 (626)
++.+|||+|||+|..+..++... +.+.+|+|+|.++.+. .++++++++|+. ||+++++|++++. ..++|
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~---~~~g~v~a~D~~~~rl~~~~~n~~r~g~~--~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELM---GDQGEIWAVDRSASRLKKLQENAQRLGLK--SIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHh---CCCceEEEEcCCHHHHHHHHHHHHHcCCC--eEEEEeCChhhcccccccccccC
Confidence 56799999999999986544433 2225999999999776 677777788875 5999999999875 13689
Q ss_pred cEEEecccccc----CCCCC----------------cHHHHHHHHHhcccCcEEEeccce
Q psy17734 416 DIMVSELLGSF----GDNEL----------------SPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 416 DiIVSEllgsf----g~~El----------------~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
|.|+.+..-|. .-+.. ..++|+.+.++|||||+++=..++
T Consensus 327 D~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 327 DRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred CEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 99998765321 11110 135788889999999999854444
No 108
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.63 E-value=3.1e-07 Score=95.50 Aligned_cols=108 Identities=18% Similarity=0.290 Sum_probs=76.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc--CCCCCcEEEEEecccccC--CCCCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE--QWAQSDVTIVSEDMRTWN--APEKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n--~~~~~nV~vi~~D~~~~~--~p~k~Di 417 (626)
..+||++|||+|.++..+++ .... .+|++||.++.++ .+++..... .+.+.+++++.+|.+++- .++++|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~---~~~~-~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLK---HKSV-EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCEEEEEcCCchHHHHHHHh---CCCc-ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE
Confidence 35899999999998865443 2222 4899999999876 555543221 233334999999987742 2478999
Q ss_pred EEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccc
Q psy17734 418 MVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 418 IVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
||++.....+..+. ..++++.+.+.|+|||+++-+..
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 99987543333333 46888999999999999997744
No 109
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.62 E-value=3.3e-07 Score=99.94 Aligned_cols=100 Identities=17% Similarity=0.112 Sum_probs=70.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--CCCccEEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--PEKADIMV 419 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~k~DiIV 419 (626)
+.+|||+|||+|.++..++... .+ .+|+|+|.|+.|+ .++++.+.++. + |+++++|+.+... .++||+||
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~--p~--a~VtAVDiS~~ALe~AreNa~~~g~--r-V~fi~gDl~e~~l~~~~~FDLIV 324 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALER--PD--AFVRASDISPPALETARKNAADLGA--R-VEFAHGSWFDTDMPSEGKWDIIV 324 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhC--CC--CEEEEEECCHHHHHHHHHHHHHcCC--c-EEEEEcchhccccccCCCccEEE
Confidence 3589999999999986433221 12 5999999999887 77777766653 4 9999999976432 35799999
Q ss_pred eccccccCCC---------------------CCc---HHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDN---------------------ELS---PECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~---------------------El~---pe~L~~~~r~LkpgGi~I 450 (626)
|++. ++... ++. ..++..+.++|+|||.++
T Consensus 325 SNPP-YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li 378 (423)
T PRK14966 325 SNPP-YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL 378 (423)
T ss_pred ECCC-CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence 9885 21111 111 234555667899999865
No 110
>PTZ00146 fibrillarin; Provisional
Probab=98.62 E-value=2.8e-07 Score=96.11 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=67.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC----CCCCcc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN----APEKAD 416 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~----~p~k~D 416 (626)
.++.+|||+|||+|.++..++ ...+.+.+|||||.++.+...+..+.... . ||..+.+|++.-. ..+.+|
T Consensus 131 kpG~~VLDLGaG~G~~t~~lA---diVG~~G~VyAVD~s~r~~~dLl~~ak~r-~--NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVS---DLVGPEGVVYAVEFSHRSGRDLTNMAKKR-P--NIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHH---HHhCCCCEEEEEECcHHHHHHHHHHhhhc-C--CCEEEECCccChhhhhcccCCCC
Confidence 367899999999999996544 43443359999999986542222221111 1 6999999987532 236799
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|++... .......++..+.++|||||.++-
T Consensus 205 vV~~Dva----~pdq~~il~~na~r~LKpGG~~vI 235 (293)
T PTZ00146 205 VIFADVA----QPDQARIVALNAQYFLKNGGHFII 235 (293)
T ss_pred EEEEeCC----CcchHHHHHHHHHHhccCCCEEEE
Confidence 9999763 111122355678899999998775
No 111
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.62 E-value=3.9e-07 Score=96.23 Aligned_cols=105 Identities=14% Similarity=0.117 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCCCCCc---c
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNAPEKA---D 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~p~k~---D 416 (626)
++.+|||+|||+|..+..++++..+ + .+|+|||.|+.++ .+.+.+....-.. +|..+++|+++ ...+.++ +
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~-~--~~~~~iDiS~~mL~~a~~~l~~~~p~~-~v~~i~gD~~~~~~~~~~~~~~~ 138 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQ-P--ARYVPIDISADALKESAAALAADYPQL-EVHGICADFTQPLALPPEPAAGR 138 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhcc-C--CeEEEEECCHHHHHHHHHHHHhhCCCc-eEEEEEEcccchhhhhcccccCC
Confidence 3468999999999999877766532 2 5999999999876 5555544322122 38889999987 3444443 3
Q ss_pred EEEeccccccCCC-C--CcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDN-E--LSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~-E--l~pe~L~~~~r~LkpgGi~IP 451 (626)
.++. ++|+...+ + ....+|..+.+.|+|||.++-
T Consensus 139 ~~~~-~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li 175 (301)
T TIGR03438 139 RLGF-FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI 175 (301)
T ss_pred eEEE-EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 3332 23332222 1 134578889999999999874
No 112
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.61 E-value=2.2e-07 Score=95.71 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=69.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---CCCccEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADIM 418 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~DiI 418 (626)
..+|||+|||+|.++..++... .+ .+|+|+|.|+.|+ .++++.+.++ ++++++|+.+... .++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~--~~--~~v~~vDis~~al~~A~~N~~~~~-----~~~~~~D~~~~l~~~~~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL--DG--IELHAADIDPAAVRCARRNLADAG-----GTVHEGDLYDALPTALRGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC--CC--CEEEEEECCHHHHHHHHHHHHHcC-----CEEEEeechhhcchhcCCCEeEE
Confidence 3589999999999996543322 12 4899999999887 6666665543 5789999876431 3579999
Q ss_pred Eecccccc---------------------CCCCC---cHHHHHHHHHhcccCcEEEec
Q psy17734 419 VSELLGSF---------------------GDNEL---SPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 419 VSEllgsf---------------------g~~El---~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|+++.-.- +..++ ...++..+.++|||||.++-.
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99875210 00011 135666778899999998743
No 113
>PHA03411 putative methyltransferase; Provisional
Probab=98.61 E-value=3.8e-07 Score=94.32 Aligned_cols=69 Identities=20% Similarity=0.319 Sum_probs=52.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSEL 422 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEl 422 (626)
.+|||+|||+|.++..++ ++.+. .+|++||.|+.+. .++++ +. +++++++|++++....+||+||+++
T Consensus 66 grVLDLGcGsGilsl~la---~r~~~-~~V~gVDisp~al~~Ar~n-----~~--~v~~v~~D~~e~~~~~kFDlIIsNP 134 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCML---HRCKP-EKIVCVELNPEFARIGKRL-----LP--EAEWITSDVFEFESNEKFDVVISNP 134 (279)
T ss_pred CeEEEcCCCCCHHHHHHH---HhCCC-CEEEEEECCHHHHHHHHHh-----Cc--CCEEEECchhhhcccCCCcEEEEcC
Confidence 579999999999985433 32211 4999999999877 43332 22 3999999999987667899999987
Q ss_pred c
Q psy17734 423 L 423 (626)
Q Consensus 423 l 423 (626)
.
T Consensus 135 P 135 (279)
T PHA03411 135 P 135 (279)
T ss_pred C
Confidence 4
No 114
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.61 E-value=4.9e-07 Score=89.89 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=71.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..+++.. +...+++++|.++.+. .+.+... +..+ ++++.+|+.+...+ +++|+|+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~---~~~~~~~~iD~~~~~~~~~~~~~~---~~~~-i~~~~~d~~~~~~~~~~~D~i~ 111 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA---PDRGKVTGVDFSSEMLEVAKKKSE---LPLN-IEFIQADAEALPFEDNSFDAVT 111 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc---CCCceEEEEECCHHHHHHHHHHhc---cCCC-ceEEecchhcCCCCCCcEEEEE
Confidence 56799999999999986544332 2114899999999776 4443332 4444 99999999987653 6899998
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+... +........+++.+.+.|+|||.++-
T Consensus 112 ~~~~--~~~~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 112 IAFG--LRNVTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred Eeee--eCCcccHHHHHHHHHHHcCCCcEEEE
Confidence 7432 11112246788999999999999874
No 115
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.61 E-value=4e-07 Score=96.92 Aligned_cols=96 Identities=19% Similarity=0.115 Sum_probs=69.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIV 419 (626)
++.+|||+|||+|.++..+++ ..+.+.+|++||.++.+. .++++++.++.. ||+++.+|..+... ..+||+|+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~---~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~--nV~~i~gD~~~~~~~~~~fD~Ii 154 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSR---VVGEKGLVVSVEYSRKICEIAKRNVRRLGIE--NVIFVCGDGYYGVPEFAPYDVIF 154 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHH---hcCCCCEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEeCChhhcccccCCccEEE
Confidence 457999999999999864433 333224799999999776 677777777764 59999999876533 25799999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+. ++ .++..+...+.|+|||.++
T Consensus 155 ~~----~g----~~~ip~~~~~~LkpgG~Lv 177 (322)
T PRK13943 155 VT----VG----VDEVPETWFTQLKEGGRVI 177 (322)
T ss_pred EC----Cc----hHHhHHHHHHhcCCCCEEE
Confidence 73 21 2334455667899999754
No 116
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.60 E-value=2.2e-07 Score=99.45 Aligned_cols=97 Identities=18% Similarity=0.193 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++.+|||+|||+|.++..++ +..+. .+|+++|.++.+. .++++.. . . +++++.+|++++..+ +.||+|+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La---~~~~~-~~VtgVD~S~~mL~~A~~k~~---~-~-~i~~i~gD~e~lp~~~~sFDvVI 183 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIV---KHVDA-KNVTILDQSPHQLAKAKQKEP---L-K-ECKIIEGDAEDLPFPTDYADRYV 183 (340)
T ss_pred CCCEEEEEecCCcHHHHHHH---HHCCC-CEEEEEECCHHHHHHHHHhhh---c-c-CCeEEeccHHhCCCCCCceeEEE
Confidence 45789999999999885433 22222 4999999999876 4444321 1 2 499999999998764 6899999
Q ss_pred ecc-ccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SEL-LGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEl-lgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+.. +.++ ......++.+.+.|||||.++
T Consensus 184 s~~~L~~~---~d~~~~L~e~~rvLkPGG~Lv 212 (340)
T PLN02490 184 SAGSIEYW---PDPQRGIKEAYRVLKIGGKAC 212 (340)
T ss_pred EcChhhhC---CCHHHHHHHHHHhcCCCcEEE
Confidence 843 2222 123468899999999999975
No 117
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.60 E-value=1.5e-07 Score=88.57 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-CCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-NAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+ +..+ .+|+++|.++.+... . ++.....+..+. ..+++||+|++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l----~~~~--~~~~g~D~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~fD~i~~ 84 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRAL----AKRG--FEVTGVDISPQMIEK----------R-NVVFDNFDAQDPPFPDGSFDLIIC 84 (161)
T ss_dssp TTSEEEEESSTTSHHHHHH----HHTT--SEEEEEESSHHHHHH----------T-TSEEEEEECHTHHCHSSSEEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHH----HHhC--CEEEEEECCHHHHhh----------h-hhhhhhhhhhhhhccccchhhHhh
Confidence 5689999999999987543 2234 499999999977643 1 233333333333 34589999998
Q ss_pred cc-ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 EL-LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 El-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.- +.++. ...++|..+.+.|||||.++-.
T Consensus 85 ~~~l~~~~---d~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 85 NDVLEHLP---DPEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp ESSGGGSS---HHHHHHHHHHHCEEEEEEEEEE
T ss_pred HHHHhhcc---cHHHHHHHHHHhcCCCCEEEEE
Confidence 43 33332 2467899999999999987744
No 118
>PRK03612 spermidine synthase; Provisional
Probab=98.60 E-value=3.3e-07 Score=103.80 Aligned_cols=110 Identities=21% Similarity=0.295 Sum_probs=77.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHH--H---HHcCCCCCcEEEEEecccccC--CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKY--K---KEEQWAQSDVTIVSEDMRTWN--APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~--~---~~n~~~~~nV~vi~~D~~~~~--~p~ 413 (626)
+.++|||+|||+|.++..++ ++.+. .+|++||.++.++ .++++ . +.+.+++.+|+++.+|.+++- .++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll---~~~~v-~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~ 372 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVL---KYPDV-EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAE 372 (521)
T ss_pred CCCeEEEEcCCccHHHHHHH---hCCCc-CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCC
Confidence 35689999999999986544 32221 4999999999877 55542 1 122344434999999999853 357
Q ss_pred CccEEEeccccccCC--CCC-cHHHHHHHHHhcccCcEEEeccce
Q psy17734 414 KADIMVSELLGSFGD--NEL-SPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 414 k~DiIVSEllgsfg~--~El-~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
+||+|++++...... ..+ ..|+++.+.+.|||||+++-+...
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 999999987543221 122 367888899999999999977643
No 119
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=4.4e-07 Score=92.03 Aligned_cols=99 Identities=20% Similarity=0.176 Sum_probs=83.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHH-HHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMS-AVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~-a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
.++.+|+|.|+|+|.|+..++++-. ...+|+.+|..+. +..|+++++..+++++ |++..+|.++...++.||.|+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~vg---~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~-v~~~~~Dv~~~~~~~~vDav~ 168 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAVG---PEGHVTTYEIREDFAKTARENLSEFGLGDR-VTLKLGDVREGIDEEDVDAVF 168 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhhC---CCceEEEEEecHHHHHHHHHHHHHhccccc-eEEEeccccccccccccCEEE
Confidence 4789999999999999987666554 3359999999874 5699999988899987 999999999988888999998
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
-++.. -.+.++.+.+.|||||.++
T Consensus 169 LDmp~-------PW~~le~~~~~Lkpgg~~~ 192 (256)
T COG2519 169 LDLPD-------PWNVLEHVSDALKPGGVVV 192 (256)
T ss_pred EcCCC-------hHHHHHHHHHHhCCCcEEE
Confidence 86642 3468999999999999876
No 120
>PLN02672 methionine S-methyltransferase
Probab=98.58 E-value=2.3e-07 Score=111.36 Aligned_cols=112 Identities=17% Similarity=0.067 Sum_probs=78.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC---------------CCcEEEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA---------------QSDVTIVSED 405 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~---------------~~nV~vi~~D 405 (626)
++.+|||+|||+|.++..++. +.. ..+|+|+|+|+.|+ .+.++++.|+.+ ++ |+++++|
T Consensus 118 ~~~~VLDlG~GSG~Iai~La~---~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~r-V~f~~sD 192 (1082)
T PLN02672 118 RDKTVAELGCGNGWISIAIAE---KWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDR-VEFYESD 192 (1082)
T ss_pred CCCEEEEEecchHHHHHHHHH---HCC-CCEEEEEECCHHHHHHHHHHHHHcCccccccccccccccccccc-EEEEECc
Confidence 456899999999999964333 222 24999999999988 888888776532 45 9999999
Q ss_pred ccccCCC--CCccEEEeccccccCC----------------------------------CCCc---HHHHHHHHHhcccC
Q psy17734 406 MRTWNAP--EKADIMVSELLGSFGD----------------------------------NELS---PECLYAAQKYLKED 446 (626)
Q Consensus 406 ~~~~~~p--~k~DiIVSEllgsfg~----------------------------------~El~---pe~L~~~~r~Lkpg 446 (626)
+.+.-.. .++|+|||++. +... ..++ ..++..+.++||||
T Consensus 193 l~~~~~~~~~~fDlIVSNPP-YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pg 271 (1082)
T PLN02672 193 LLGYCRDNNIELDRIVGCIP-QILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPM 271 (1082)
T ss_pred hhhhccccCCceEEEEECCC-cCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCC
Confidence 9875422 37999999875 1111 1111 23455667899999
Q ss_pred cEEEeccceeeEE
Q psy17734 447 GISIPYNYTSYIA 459 (626)
Q Consensus 447 Gi~IP~~~t~y~a 459 (626)
|.++-.-+.-...
T Consensus 272 G~l~lEiG~~q~~ 284 (1082)
T PLN02672 272 GIMIFNMGGRPGQ 284 (1082)
T ss_pred CEEEEEECccHHH
Confidence 9988765544443
No 121
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.58 E-value=4.4e-07 Score=100.46 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|..+..++.. .+...+|+|+|.++.++ .++++.++.+.. +|+++.+|++++. .+++||.|
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~---~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~--~v~~~~~Da~~l~~~~~~~fD~V 311 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAEL---MKDQGKILAVDISREKIQLVEKHAKRLKLS--SIEIKIADAERLTEYVQDTFDRI 311 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHH---cCCCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEECchhhhhhhhhccCCEE
Confidence 5679999999999998654433 22225999999999776 777777777775 5999999999875 34789999
Q ss_pred Eeccccc-cCCCCCc-------------------HHHHHHHHHhcccCcEEEeccce
Q psy17734 419 VSELLGS-FGDNELS-------------------PECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 419 VSEllgs-fg~~El~-------------------pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
+.+..-+ +|.-... .++|..+.++|||||+++-+.+|
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9876432 2221111 23577788999999999866665
No 122
>PRK05785 hypothetical protein; Provisional
Probab=98.55 E-value=1.1e-06 Score=89.09 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSE 421 (626)
+.+|||+|||||.++..+.+. .+ .+|+|+|.|+.++...+.. .+.+++|+++++.+ ++||+|++.
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~---~~--~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~ 117 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKV---FK--YYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSS 117 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHh---cC--CEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEec
Confidence 568999999999988643332 23 4999999999887332211 23468899988764 689999994
Q ss_pred cccccCCC--CCcHHHHHHHHHhcccCc
Q psy17734 422 LLGSFGDN--ELSPECLYAAQKYLKEDG 447 (626)
Q Consensus 422 llgsfg~~--El~pe~L~~~~r~LkpgG 447 (626)
. +.+ +..+..+..+.|.|||.+
T Consensus 118 ~----~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 118 F----ALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred C----hhhccCCHHHHHHHHHHHhcCce
Confidence 3 222 224678999999999954
No 123
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=7.9e-07 Score=88.24 Aligned_cols=94 Identities=19% Similarity=0.266 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCCCCCccEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNAPEKADIM 418 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~p~k~DiI 418 (626)
.++.+||+||||+|-.+-. .++..+ +|++||..+... .|+++++..|.. ||+++++|... |+...+||.|
T Consensus 71 ~~g~~VLEIGtGsGY~aAv---la~l~~---~V~siEr~~~L~~~A~~~L~~lg~~--nV~v~~gDG~~G~~~~aPyD~I 142 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAV---LARLVG---RVVSIERIEELAEQARRNLETLGYE--NVTVRHGDGSKGWPEEAPYDRI 142 (209)
T ss_pred CCCCeEEEECCCchHHHHH---HHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCC--ceEEEECCcccCCCCCCCcCEE
Confidence 3678999999999999843 333333 999999998655 888888888886 69999999877 4444799999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+.. .+..+ .|+. ..+.||+||+++
T Consensus 143 ~Vt----aaa~~-vP~~---Ll~QL~~gGrlv 166 (209)
T COG2518 143 IVT----AAAPE-VPEA---LLDQLKPGGRLV 166 (209)
T ss_pred EEe----eccCC-CCHH---HHHhcccCCEEE
Confidence 873 22222 3433 345699999976
No 124
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.55 E-value=4.4e-07 Score=100.40 Aligned_cols=105 Identities=17% Similarity=0.113 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~Di 417 (626)
++.+|||+|||+|..+..++..+ +. .+|+|+|.++.+. .++++...++. +++++++|++++.. +++||.
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~---~~-~~v~a~D~s~~~l~~~~~n~~~~g~---~~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELA---PQ-AQVVALDIDAQRLERVRENLQRLGL---KATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHc---CC-CEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEcCcccchhhcccCCCCE
Confidence 56799999999999996544433 21 4999999999876 66667666766 38899999987642 367999
Q ss_pred EEeccccc-cCC---C-CC---------------cHHHHHHHHHhcccCcEEEecc
Q psy17734 418 MVSELLGS-FGD---N-EL---------------SPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 418 IVSEllgs-fg~---~-El---------------~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
|+++..-+ .|. + +. ...+|+.+.+.|||||.++-..
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 99877422 110 0 00 1246778889999999998443
No 125
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.54 E-value=2.3e-07 Score=92.86 Aligned_cols=96 Identities=17% Similarity=0.106 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc-CCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW-NAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~-~~p~k~DiIV 419 (626)
++.+|||||||+|-++..+.... |...+|++||.++... .+++++...+.. ||+++.+|...- +...+||.|+
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lv---g~~g~Vv~vE~~~~l~~~A~~~l~~~~~~--nv~~~~gdg~~g~~~~apfD~I~ 146 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLV---GPVGRVVSVERDPELAERARRNLARLGID--NVEVVVGDGSEGWPEEAPFDRII 146 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH---STTEEEEEEESBHHHHHHHHHHHHHHTTH--SEEEEES-GGGTTGGG-SEEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhc---CccceEEEECccHHHHHHHHHHHHHhccC--ceeEEEcchhhccccCCCcCEEE
Confidence 67899999999999985444333 4335899999999765 788888877776 699999998763 3336899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+. .+.. ..| ....+.||+||++|
T Consensus 147 v~----~a~~-~ip---~~l~~qL~~gGrLV 169 (209)
T PF01135_consen 147 VT----AAVP-EIP---EALLEQLKPGGRLV 169 (209)
T ss_dssp ES----SBBS-S-----HHHHHTEEEEEEEE
T ss_pred Ee----eccc-hHH---HHHHHhcCCCcEEE
Confidence 83 2222 233 33456699999977
No 126
>KOG2904|consensus
Probab=98.54 E-value=5.3e-07 Score=91.72 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCc
Q psy17734 320 IRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSD 398 (626)
Q Consensus 320 ~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~n 398 (626)
+.+-+++..++... .-.++..+||+|||+|.++...+.- .+ +.+|+|||+++.|+ +|.++.+++++.++
T Consensus 131 EE~V~~Vid~~~~~-----~~~~~~~ildlgtGSGaIslsll~~---L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~- 200 (328)
T KOG2904|consen 131 EEWVEAVIDALNNS-----EHSKHTHILDLGTGSGAISLSLLHG---LP-QCTVTAIDVSKAAIKLAKENAQRLKLSGR- 200 (328)
T ss_pred HHHHHHHHHHHhhh-----hhcccceEEEecCCccHHHHHHHhc---CC-CceEEEEeccHHHHHHHHHHHHHHhhcCc-
Confidence 44555555555431 1124558999999999999654332 33 37999999999988 88899999999999
Q ss_pred EEEEEeccccc---CC---CCCccEEEecccccc---------------------CCCCCc---HHHHHHHHHhcccCcE
Q psy17734 399 VTIVSEDMRTW---NA---PEKADIMVSELLGSF---------------------GDNELS---PECLYAAQKYLKEDGI 448 (626)
Q Consensus 399 V~vi~~D~~~~---~~---p~k~DiIVSEllgsf---------------------g~~El~---pe~L~~~~r~LkpgGi 448 (626)
+.+++-+|+.- +. ..+.|++||++.--+ |..|+. -.+++.+.|.|+|||.
T Consensus 201 i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~ 280 (328)
T KOG2904|consen 201 IEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGF 280 (328)
T ss_pred eEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCe
Confidence 99998888652 22 278999999875211 112222 1234566789999987
Q ss_pred EEec
Q psy17734 449 SIPY 452 (626)
Q Consensus 449 ~IP~ 452 (626)
+.-.
T Consensus 281 ~~le 284 (328)
T KOG2904|consen 281 EQLE 284 (328)
T ss_pred EEEE
Confidence 6543
No 127
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.53 E-value=2.3e-07 Score=91.00 Aligned_cols=120 Identities=24% Similarity=0.191 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCc
Q psy17734 320 IRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSD 398 (626)
Q Consensus 320 ~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~n 398 (626)
+.-++|+...+... ..++.+|||+-||||.++. +|..+. + .+|+.||+|+.+. ..+++++.-+..++
T Consensus 26 drvrealFniL~~~------~~~g~~vLDLFaGSGalGl---EALSRG-A-~~v~fVE~~~~a~~~i~~N~~~l~~~~~- 93 (183)
T PF03602_consen 26 DRVREALFNILQPR------NLEGARVLDLFAGSGALGL---EALSRG-A-KSVVFVEKNRKAIKIIKKNLEKLGLEDK- 93 (183)
T ss_dssp HHHHHHHHHHHHCH-------HTT-EEEETT-TTSHHHH---HHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGG-
T ss_pred HHHHHHHHHHhccc------ccCCCeEEEcCCccCccHH---HHHhcC-C-CeEEEEECCHHHHHHHHHHHHHhCCCcc-
Confidence 34467777777653 0257899999999999995 455543 3 4999999999887 66777777777776
Q ss_pred EEEEEecccccC-----CCCCccEEEeccccccCCCCCcHHHHHHHH--HhcccCcEEEecc
Q psy17734 399 VTIVSEDMRTWN-----APEKADIMVSELLGSFGDNELSPECLYAAQ--KYLKEDGISIPYN 453 (626)
Q Consensus 399 V~vi~~D~~~~~-----~p~k~DiIVSEllgsfg~~El~pe~L~~~~--r~LkpgGi~IP~~ 453 (626)
++++.+|....- ..++||+|+.++.-.. ....+++++.+. .+|+++|++|-..
T Consensus 94 ~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~--~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 94 IRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAK--GLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp EEEEESSHHHHHHHHHHCTS-EEEEEE--STTS--CHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred eeeeccCHHHHHHhhcccCCCceEEEECCCccc--chHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 999999965431 2479999999886322 111367777765 6899999988554
No 128
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.52 E-value=4.3e-07 Score=91.27 Aligned_cols=101 Identities=16% Similarity=0.046 Sum_probs=67.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCC--------------CCCcEEEEEeccc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQW--------------AQSDVTIVSEDMR 407 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~--------------~~~nV~vi~~D~~ 407 (626)
++.+|||+|||.|.-+.+++. .| .+|+|||.|+.|+..... +++. .. +|+++.+|+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~----~G--~~V~gvD~S~~Ai~~~~~--~~~~~~~~~~~~~~~~~~~~-~v~~~~~D~~ 104 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAE----QG--HRVLGVELSEIAVEQFFA--ENGLTPTVTQQGEFTRYRAG-NIEIFCGDFF 104 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHh----CC--CeEEEEeCCHHHHHHHHH--HcCCCcceeccccceeeecC-ceEEEEccCC
Confidence 346899999999999865432 34 599999999988843211 1221 23 4999999999
Q ss_pred ccCC--CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 408 TWNA--PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 408 ~~~~--p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.. .++||.|+---.-.....+.-+..+..+.+.|||||.++-
T Consensus 105 ~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 105 ALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 8874 2578988752211111111124467788899999997543
No 129
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.51 E-value=9.6e-07 Score=88.47 Aligned_cols=99 Identities=15% Similarity=0.180 Sum_probs=71.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC--CCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP--EKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--~k~DiI 418 (626)
.+.+|||+|||+|.++..++ + .+ .+|+++|.++.++ .+.+....++.. . ++++.+|+.++..+ .++|+|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~---~-~~--~~v~~iD~s~~~~~~a~~~~~~~~~~-~-~~~~~~d~~~~~~~~~~~~D~i 116 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLA---R-LG--ANVTGIDASEENIEVAKLHAKKDPLL-K-IEYRCTSVEDLAEKGAKSFDVV 116 (224)
T ss_pred CCCeEEEECCCCCHHHHHHH---h-cC--CeEEEEeCCHHHHHHHHHHHHHcCCC-c-eEEEeCCHHHhhcCCCCCccEE
Confidence 46789999999999885432 2 23 3799999999776 555554444442 3 99999999887543 689999
Q ss_pred Eecc-ccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSEL-LGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.- +.+. +....++..+.+.|+|||.++-
T Consensus 117 ~~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~i 147 (224)
T TIGR01983 117 TCMEVLEHV---PDPQAFIRACAQLLKPGGILFF 147 (224)
T ss_pred EehhHHHhC---CCHHHHHHHHHHhcCCCcEEEE
Confidence 8842 2222 2345688999999999998764
No 130
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.51 E-value=5.4e-07 Score=91.06 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||+|||+|.++..+ ++ .+ .+|+++|.++.+. .+.+.....+. . ++++.+|+.++. ..++||+|
T Consensus 48 ~~~~vLdiG~G~G~~~~~l---~~-~~--~~v~~iD~s~~~~~~a~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~fD~I 118 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESM---AR-LG--ADVTGIDASEENIEVARLHALESGL--K-IDYRQTTAEELAAEHPGQFDVV 118 (233)
T ss_pred CCCeEEEeCCCCCHHHHHH---HH-cC--CeEEEEcCCHHHHHHHHHHHHHcCC--c-eEEEecCHHHhhhhcCCCccEE
Confidence 5678999999999988543 33 23 4899999999876 55555444444 3 889999988874 34789999
Q ss_pred Eecc-ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 419 VSEL-LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 419 VSEl-lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++.. +.+. ....+++..+.++|+|||.++-.
T Consensus 119 i~~~~l~~~---~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 119 TCMEMLEHV---PDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred EEhhHhhcc---CCHHHHHHHHHHHcCCCcEEEEE
Confidence 8843 2222 23467889999999999998744
No 131
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.51 E-value=8.3e-07 Score=96.18 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---APEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p~k~Di 417 (626)
.+.++||||||+|.+.. .+|++. ....++|||+++.++ .+++.+..+++. ||.++++|++.+. .++.+|.
T Consensus 122 ~~p~vLEIGcGsG~~ll---~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~--NV~~i~~DA~~ll~~~~~~s~D~ 195 (390)
T PRK14121 122 QEKILIEIGFGSGRHLL---YQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLK--NLLIINYDARLLLELLPSNSVEK 195 (390)
T ss_pred CCCeEEEEcCcccHHHH---HHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCC--cEEEEECCHHHhhhhCCCCceeE
Confidence 34689999999999885 333332 236999999998765 677777778876 7999999998752 2478999
Q ss_pred EEeccccccCCCC----CcHHHHHHHHHhcccCcEEEe
Q psy17734 418 MVSELLGSFGDNE----LSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 418 IVSEllgsfg~~E----l~pe~L~~~~r~LkpgGi~IP 451 (626)
|+......+.-.. ..+.+++.+.|.|+|||.+.-
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 9874322221111 126789999999999998653
No 132
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.50 E-value=9e-07 Score=85.38 Aligned_cols=96 Identities=20% Similarity=0.253 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCC-CccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPE-KADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~-k~DiIV 419 (626)
++.+|||+|||+|.++..++.. + .+|+|||.++.+. .++++.. + .+ +++++++|+.++..+. ++|.|+
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~----~--~~v~~vE~~~~~~~~~~~~~~--~-~~-~v~ii~~D~~~~~~~~~~~d~vi 82 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLER----A--ARVTAIEIDPRLAPRLREKFA--A-AD-NLTVIHGDALKFDLPKLQPYKVV 82 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhc----C--CeEEEEECCHHHHHHHHHHhc--c-CC-CEEEEECchhcCCccccCCCEEE
Confidence 4568999999999999754432 2 4999999999877 4444332 2 23 4999999999987664 599999
Q ss_pred eccccccCCCCCcHHHHHHHHH--hcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQK--YLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r--~LkpgGi~IP~ 452 (626)
+++.-+ ...+.+..+.+ .+.++|+++-+
T Consensus 83 ~n~Py~-----~~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 83 GNLPYN-----ISTPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred ECCCcc-----cHHHHHHHHHhcCCCcceEEEEEE
Confidence 987532 12334444332 23466666654
No 133
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.49 E-value=3.1e-07 Score=90.60 Aligned_cols=99 Identities=16% Similarity=0.246 Sum_probs=73.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
....|.|+|||+|..+..+ +.+-.+ ..|+|+|.|+.|+...+.+ +. |+++..+|+++|..+.+.|+++++
T Consensus 30 ~~~~v~DLGCGpGnsTelL--~~RwP~--A~i~GiDsS~~Mla~Aa~r----lp--~~~f~~aDl~~w~p~~~~dllfaN 99 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELL--ARRWPD--AVITGIDSSPAMLAKAAQR----LP--DATFEEADLRTWKPEQPTDLLFAN 99 (257)
T ss_pred ccceeeecCCCCCHHHHHH--HHhCCC--CeEeeccCCHHHHHHHHHh----CC--CCceecccHhhcCCCCccchhhhh
Confidence 4568999999999998633 223223 5999999999887333221 12 599999999999998999999997
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
-.-.++- .-++.|......|.|||.+--|
T Consensus 100 AvlqWlp--dH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 100 AVLQWLP--DHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred hhhhhcc--ccHHHHHHHHHhhCCCceEEEE
Confidence 6544432 2367788888889999987644
No 134
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.49 E-value=6.7e-07 Score=93.06 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=68.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH---HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV---VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~---~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
++++|||||||.|-.+.+++.++ + ..|+|+|.++.-. .+.+.. -+.... +..+.--+++++..++||+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~G----A-~~ViGiDP~~lf~~QF~~i~~~--lg~~~~-~~~lplgvE~Lp~~~~FDtV 186 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRG----A-KSVIGIDPSPLFYLQFEAIKHF--LGQDPP-VFELPLGVEDLPNLGAFDTV 186 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcC----C-CEEEEECCChHHHHHHHHHHHH--hCCCcc-EEEcCcchhhccccCCcCEE
Confidence 67899999999999996544433 3 4999999997543 222222 222223 56665566777656899999
Q ss_pred EeccccccCCCCCcH-HHHHHHHHhcccCcEEEec
Q psy17734 419 VSELLGSFGDNELSP-ECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 419 VSEllgsfg~~El~p-e~L~~~~r~LkpgGi~IP~ 452 (626)
+| ||-+. +...| +.|..+...|+|||.+|-+
T Consensus 187 F~--MGVLY-Hrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 187 FS--MGVLY-HRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred EE--eeehh-ccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 99 65332 23334 6788899999999986643
No 135
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.47 E-value=4.9e-07 Score=96.20 Aligned_cols=97 Identities=28% Similarity=0.256 Sum_probs=79.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
+|.+|+|.-||-|+++.- +|+ .|+ .+|+|+|+||.|+ ..+++++.|++.++ |+.++||.+++... ..+|-|+
T Consensus 188 ~GE~V~DmFAGVGpfsi~---~Ak-~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~-v~~i~gD~rev~~~~~~aDrIi 261 (341)
T COG2520 188 EGETVLDMFAGVGPFSIP---IAK-KGR-PKVYAIDINPDAVEYLKENIRLNKVEGR-VEPILGDAREVAPELGVADRII 261 (341)
T ss_pred CCCEEEEccCCcccchhh---hhh-cCC-ceEEEEecCHHHHHHHHHHHHhcCccce-eeEEeccHHHhhhccccCCEEE
Confidence 478999999999999954 443 232 3599999999998 66778889999988 99999999998765 7899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..+++ ...+++..+.+.+++||++-
T Consensus 262 m~~p~------~a~~fl~~A~~~~k~~g~iH 286 (341)
T COG2520 262 MGLPK------SAHEFLPLALELLKDGGIIH 286 (341)
T ss_pred eCCCC------cchhhHHHHHHHhhcCcEEE
Confidence 86654 34668888888999999875
No 136
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.47 E-value=8.4e-07 Score=98.17 Aligned_cols=109 Identities=20% Similarity=0.082 Sum_probs=77.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~Di 417 (626)
++.+|||+|||+|..+..+++.. + ..+|+|+|.++.+. .+++++++.+.... ++++.+|..+... .++||.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~---~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~-v~~~~~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELA---P-QAQVVALDIHEHRLKRVYENLKRLGLTIK-AETKDGDGRGPSQWAENEQFDR 312 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHc---C-CCeEEEEeCCHHHHHHHHHHHHHcCCCeE-EEEeccccccccccccccccCE
Confidence 56799999999999987554433 2 25999999999776 67777777777544 6668888776542 467999
Q ss_pred EEeccccc-cCC---CCC----------------cHHHHHHHHHhcccCcEEEeccce
Q psy17734 418 MVSELLGS-FGD---NEL----------------SPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 418 IVSEllgs-fg~---~El----------------~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
|+++..-+ +|. +.. ..++|+.+.++|||||.++=+.+|
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 99875422 111 110 135788888999999999855444
No 137
>PLN02476 O-methyltransferase
Probab=98.46 E-value=6.8e-07 Score=92.97 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=82.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--C-----CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--A-----PE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~-----p~ 413 (626)
+.++||++|+|+|.-+++++.+... ..+|+++|.++... .|+++.++.|+.++ |+++.+|..+.- + .+
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~---~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~-I~li~GdA~e~L~~l~~~~~~~ 193 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPE---SGCLVACERDSNSLEVAKRYYELAGVSHK-VNVKHGLAAESLKSMIQNGEGS 193 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCC---CCEEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEEcCHHHHHHHHHhcccCC
Confidence 4579999999999999766554432 24899999999765 89999999999988 999999987641 1 35
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecccee
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
+||+|+-+.- ...-++.++.+.++|+|||+++-+..-.
T Consensus 194 ~FD~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278)
T PLN02476 194 SYDFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278)
T ss_pred CCCEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 8999976431 2224778888889999999998776533
No 138
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.46 E-value=5.8e-07 Score=90.65 Aligned_cols=98 Identities=16% Similarity=0.060 Sum_probs=68.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCC--------------CCCcEEEEEeccc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQW--------------AQSDVTIVSEDMR 407 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~--------------~~~nV~vi~~D~~ 407 (626)
++.+|||+|||.|.-+.+++. .| .+|+|||.++.|+.... .++++ ..+ |+++++|+.
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~----~G--~~V~avD~s~~Ai~~~~--~~~~l~~~~~~~~~~~~~~~~~-v~~~~~D~~ 107 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAE----QG--HEVLGVELSELAVEQFF--AENGLTPQTRQSGEFEHYQAGE-ITIYCGDFF 107 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHh----CC--CeEEEEccCHHHHHHHH--HHcCCCccccccccccccccCc-eEEEECccc
Confidence 346899999999999865432 34 59999999998884321 12222 244 999999999
Q ss_pred ccCCC--CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 408 TWNAP--EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 408 ~~~~p--~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
++... .+||.|+-.-+-.....+.-+..+..+.++|||||+
T Consensus 108 ~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 108 ALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred CCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence 98643 578999864422222223235678888999999986
No 139
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.44 E-value=1e-06 Score=88.58 Aligned_cols=97 Identities=19% Similarity=0.150 Sum_probs=64.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..++ + .+ .+|+++|.++.++ .+++.....+..++ |+++.+|.... .+.||+|++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~---~-~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~-i~~~~~d~~~~--~~~fD~v~~ 133 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLA---R-RG--AKVVASDISPQMVEEARERAPEAGLAGN-ITFEVGDLESL--LGRFDTVVC 133 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHH---H-cC--CEEEEEECCHHHHHHHHHHHHhcCCccC-cEEEEcCchhc--cCCcCEEEE
Confidence 45789999999999986443 2 23 3799999999887 66666556666555 99999995443 367999987
Q ss_pred cc-ccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 421 EL-LGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 421 El-lgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
-- +.++. .+....++..+.+.++++++
T Consensus 134 ~~~l~~~~-~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 134 LDVLIHYP-QEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred cchhhcCC-HHHHHHHHHHHHhhcCCeEE
Confidence 32 22221 22234566666665554444
No 140
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.44 E-value=2.1e-06 Score=95.41 Aligned_cols=95 Identities=16% Similarity=0.082 Sum_probs=69.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----C-CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN----A-PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~----~-p~k~ 415 (626)
++.+|||+|||+|.++..++ +.. .+|+|+|.|+.|+ .++++.+.++.. |++++.+|+.+.. . ..++
T Consensus 297 ~~~~VLDlgcGtG~~sl~la---~~~---~~V~gvD~s~~al~~A~~n~~~~~~~--~v~~~~~d~~~~l~~~~~~~~~f 368 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLA---RQA---AEVVGVEGVEAMVERARENARRNGLD--NVTFYHANLEEDFTDQPWALGGF 368 (443)
T ss_pred CCCEEEEEeccCCHHHHHHH---HhC---CEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEEeChHHhhhhhhhhcCCC
Confidence 45789999999999986433 322 3999999999887 777777778875 5999999997642 1 2579
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|+|++++.-. +..+.+..+.+ ++|+++++
T Consensus 369 D~Vi~dPPr~-----g~~~~~~~l~~-~~~~~ivy 397 (443)
T PRK13168 369 DKVLLDPPRA-----GAAEVMQALAK-LGPKRIVY 397 (443)
T ss_pred CEEEECcCCc-----ChHHHHHHHHh-cCCCeEEE
Confidence 9999988632 23456655544 57777644
No 141
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.43 E-value=1.8e-06 Score=93.88 Aligned_cols=95 Identities=11% Similarity=0.086 Sum_probs=71.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--CCCccEEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--PEKADIMV 419 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~k~DiIV 419 (626)
+.+|||+|||+|.++..+ +.. + .+|+|||.|+.|+ .++++.+.++.. |++++.+|++++.. ..++|+||
T Consensus 234 ~~~vLDL~cG~G~~~l~l---a~~-~--~~v~~vE~~~~av~~a~~N~~~~~~~--~~~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHC---AGP-D--TQLTGIEIESEAIACAQQSAQMLGLD--NLSFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred CCEEEEccCCccHHHHHH---hhc-C--CeEEEEECCHHHHHHHHHHHHHcCCC--cEEEEECCHHHHHHhcCCCCCEEE
Confidence 468999999999998643 332 2 3999999999888 777888888875 59999999987542 24699999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.++.-. ...+++++.+.+ ++|+++++
T Consensus 306 ~DPPr~----G~~~~~l~~l~~-~~p~~ivy 331 (374)
T TIGR02085 306 VNPPRR----GIGKELCDYLSQ-MAPKFILY 331 (374)
T ss_pred ECCCCC----CCcHHHHHHHHh-cCCCeEEE
Confidence 998842 223566666643 67877655
No 142
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.42 E-value=2.5e-06 Score=90.69 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--CCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--PEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~k~DiI 418 (626)
++.+|||+|||+|.++..+ ++. + .+|+|+|.|+.++ .++++.+.++.. |++++.+|+.++.. .+++|+|
T Consensus 173 ~~~~VLDl~cG~G~~sl~l---a~~-~--~~V~gvD~s~~av~~A~~n~~~~~l~--~v~~~~~D~~~~~~~~~~~~D~V 244 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHC---ATP-G--MQLTGIEISAEAIACAKQSAAELGLT--NVQFQALDSTQFATAQGEVPDLV 244 (315)
T ss_pred CCCEEEEccCCCCHHHHHH---Hhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCC--ceEEEEcCHHHHHHhcCCCCeEE
Confidence 3578999999999998643 332 3 3999999999887 777888888874 59999999988642 3579999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|.++.-. | ..+++++.+.+ ++|+++++
T Consensus 245 v~dPPr~-G---~~~~~~~~l~~-~~~~~ivy 271 (315)
T PRK03522 245 LVNPPRR-G---IGKELCDYLSQ-MAPRFILY 271 (315)
T ss_pred EECCCCC-C---ccHHHHHHHHH-cCCCeEEE
Confidence 9988632 1 12344444333 45665544
No 143
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.41 E-value=2.3e-06 Score=85.46 Aligned_cols=92 Identities=16% Similarity=0.110 Sum_probs=60.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++.+|||+|||+|.++..+.... .+ .+|+|||.|+.++...+.. . . +++++++|+.+...+++||+|++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~--~~--~~v~giDiS~~~l~~A~~~----~-~-~~~~~~~d~~~~~~~~sfD~V~~~ 112 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLL--PF--KHIYGVEINEYAVEKAKAY----L-P-NINIIQGSLFDPFKDNFFDLVLTK 112 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhC--CC--CeEEEEECCHHHHHHHHhh----C-C-CCcEEEeeccCCCCCCCEEEEEEC
Confidence 45689999999999986543321 12 5999999999887433321 1 2 388889998883234689999985
Q ss_pred cccccCCCCCcHHHHHHHHHhc
Q psy17734 422 LLGSFGDNELSPECLYAAQKYL 443 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~L 443 (626)
-+-+....+...+++..+.|.+
T Consensus 113 ~vL~hl~p~~~~~~l~el~r~~ 134 (204)
T TIGR03587 113 GVLIHINPDNLPTAYRELYRCS 134 (204)
T ss_pred ChhhhCCHHHHHHHHHHHHhhc
Confidence 4333333333455666666665
No 144
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.40 E-value=1.4e-06 Score=92.63 Aligned_cols=99 Identities=16% Similarity=0.122 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCC---CCCcEEEEEecccccCCCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQW---AQSDVTIVSEDMRTWNAPEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~---~~~nV~vi~~D~~~~~~p~k~Di 417 (626)
++.+|||+|||+|.++..+++ .| .+|+|+|.|+.++ .++++....+. ...++++..+|++++ +++||+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~----~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~ 215 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLAL----EG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDT 215 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHH----CC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCE
Confidence 457999999999999864433 23 4999999999887 66665443311 111489999998876 478999
Q ss_pred EEeccc-cccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 418 MVSELL-GSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 418 IVSEll-gsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|++-.. .++. .+...+++..+.+ +.++|++|
T Consensus 216 Vv~~~vL~H~p-~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 216 VTCLDVLIHYP-QDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred EEEcCEEEecC-HHHHHHHHHHHHh-hcCCEEEE
Confidence 998432 2221 1222334444443 45777766
No 145
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.40 E-value=5.6e-07 Score=89.89 Aligned_cols=109 Identities=13% Similarity=0.086 Sum_probs=82.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHH-HHHHHHHHHcCCCCCcEEEEEecccccC------C-CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSA-VVGLKYKKEEQWAQSDVTIVSEDMRTWN------A-PE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a-~~a~~~~~~n~~~~~nV~vi~~D~~~~~------~-p~ 413 (626)
+.++||+||||+|.-+++++++... +.+|++||.++.. ..|++..++.+++++ |+++.+|..++- . ++
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~---~g~i~tiE~~~~~~~~A~~~~~~ag~~~~-I~~~~gda~~~l~~l~~~~~~~ 120 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPE---DGKITTIEIDPERAEIARENFRKAGLDDR-IEVIEGDALEVLPELANDGEEG 120 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTT---TSEEEEEESSHHHHHHHHHHHHHTTGGGG-EEEEES-HHHHHHHHHHTTTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcc---cceEEEecCcHHHHHHHHHHHHhcCCCCc-EEEEEeccHhhHHHHHhccCCC
Confidence 3478999999999988766655432 2599999999965 488899999999888 999999998741 1 25
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEE
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIA 459 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~a 459 (626)
+||+|+-+- +-..-+++++.+.++|+|||++|-+..-....
T Consensus 121 ~fD~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~ 161 (205)
T PF01596_consen 121 QFDFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLWRGS 161 (205)
T ss_dssp SEEEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTGGGG
T ss_pred ceeEEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccccce
Confidence 799997632 11223678888889999999999887665543
No 146
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.39 E-value=1.4e-06 Score=94.83 Aligned_cols=98 Identities=17% Similarity=0.111 Sum_probs=75.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEEe
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMVS 420 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIVS 420 (626)
+.+|||++||+|.++. +++++.+. .+|+++|.|+.|+ .++++++.|+.. +++++++|.+++-. .++||+|+.
T Consensus 58 ~~~vLDl~aGsG~~~l---~~a~~~~~-~~V~a~Din~~Av~~a~~N~~~N~~~--~~~v~~~Da~~~l~~~~~fD~V~l 131 (382)
T PRK04338 58 RESVLDALSASGIRGI---RYALETGV-EKVTLNDINPDAVELIKKNLELNGLE--NEKVFNKDANALLHEERKFDVVDI 131 (382)
T ss_pred CCEEEECCCcccHHHH---HHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCC--ceEEEhhhHHHHHhhcCCCCEEEE
Confidence 3589999999999995 44444443 4899999999988 778888888875 48899999987533 467999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++.|+ ..++++.+-+.+++||++.-.
T Consensus 132 DP~Gs------~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 132 DPFGS------PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCCCC------cHHHHHHHHHHhcCCCEEEEE
Confidence 87532 245788877778999987644
No 147
>PLN02823 spermine synthase
Probab=98.37 E-value=2.8e-06 Score=90.90 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCCCCCcEEEEEecccccC--CCCCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQWAQSDVTIVSEDMRTWN--APEKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~~~~nV~vi~~D~~~~~--~p~k~Di 417 (626)
.++||.+|+|.|.++..+++ ..+. .+|++||+++..+ .+++.... .++.+.+++++.+|.+++- ..+++|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~---~~~~-~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLR---HKTV-EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCEEEEECCCchHHHHHHHh---CCCC-CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccE
Confidence 46899999999999865443 2222 4899999999877 55555432 2344445999999999863 3478999
Q ss_pred EEeccccccC---CCCC-cHHHHH-HHHHhcccCcEEEeccc
Q psy17734 418 MVSELLGSFG---DNEL-SPECLY-AAQKYLKEDGISIPYNY 454 (626)
Q Consensus 418 IVSEllgsfg---~~El-~pe~L~-~~~r~LkpgGi~IP~~~ 454 (626)
|+.++..... ...+ ..++++ .+.+.|+|||+++-+..
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 9998654221 1122 367887 78899999999886543
No 148
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.35 E-value=1.5e-06 Score=89.17 Aligned_cols=120 Identities=24% Similarity=0.347 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCCCCCcEEEEEecccccC--CCC-Cc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQWAQSDVTIVSEDMRTWN--APE-KA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~~~~nV~vi~~D~~~~~--~p~-k~ 415 (626)
+.++||.||.|.|..+..++ +.... .+|++||.++..+ .+++.... .++.+.+++++.+|.+.+- ..+ ++
T Consensus 76 ~p~~VLiiGgG~G~~~~ell---~~~~~-~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELL---KHPPV-ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHT---TSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-E
T ss_pred CcCceEEEcCCChhhhhhhh---hcCCc-ceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcc
Confidence 45789999999999986433 22222 4999999999876 55554432 2344445999999998862 345 89
Q ss_pred cEEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHHH
Q psy17734 416 DIMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQ 469 (626)
Q Consensus 416 DiIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~ 469 (626)
|+|+.++....+.... ..++++.+.+.|+|||+++-+. ..|...+.....
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~----~~~~~~~~~~~~ 203 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA----GSPFLHPELFKS 203 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE----EETTTTHHHHHH
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc----cCcccchHHHHH
Confidence 9999988764333322 4789999999999999999776 334444444443
No 149
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.32 E-value=5.9e-06 Score=86.31 Aligned_cols=112 Identities=22% Similarity=0.350 Sum_probs=86.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--cCC-CCCcEEEEEecccccC--CCCCccE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--EQW-AQSDVTIVSEDMRTWN--APEKADI 417 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--n~~-~~~nV~vi~~D~~~~~--~p~k~Di 417 (626)
++||.||.|.|...+.+++.. .. .+++.||+++..+ .+++.... .+. ..| ++++.+|..++- .+++||+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~---~v-e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpR-v~i~i~Dg~~~v~~~~~~fDv 152 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL---PV-ERITMVEIDPAVIELARKYLPEPSGGADDPR-VEIIIDDGVEFLRDCEEKFDV 152 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC---Cc-ceEEEEEcCHHHHHHHHHhccCcccccCCCc-eEEEeccHHHHHHhCCCcCCE
Confidence 589999999999987554433 22 4999999999876 66665432 122 245 999999999874 3468999
Q ss_pred EEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccceeeEEe
Q psy17734 418 MVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNYTSYIAP 460 (626)
Q Consensus 418 IVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~t~y~ap 460 (626)
||.+.-...|..+. ..++++++++.|+++|+++-+....+..+
T Consensus 153 Ii~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~ 197 (282)
T COG0421 153 IIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQD 197 (282)
T ss_pred EEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccch
Confidence 99987665555555 37899999999999999999988777777
No 150
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.32 E-value=5.9e-06 Score=91.56 Aligned_cols=96 Identities=18% Similarity=0.151 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----C-CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN----A-PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~----~-p~k~ 415 (626)
++.+|||+|||+|.++..++ +.. .+|+|||.|+.++ .++++...++.. ||+++.+|+.++- . ..++
T Consensus 292 ~~~~vLDl~cG~G~~sl~la---~~~---~~V~~vE~~~~av~~a~~n~~~~~~~--nv~~~~~d~~~~l~~~~~~~~~~ 363 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLA---KQA---KSVVGIEVVPESVEKAQQNAELNGIA--NVEFLAGTLETVLPKQPWAGQIP 363 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHH---HhC---CEEEEEEcCHHHHHHHHHHHHHhCCC--ceEEEeCCHHHHHHHHHhcCCCC
Confidence 45789999999999996533 322 3999999999887 777787778875 6999999997641 1 2469
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|+|+.++... | +.+++++.+.+ ++|+++++
T Consensus 364 D~vi~dPPr~-G---~~~~~l~~l~~-l~~~~ivy 393 (431)
T TIGR00479 364 DVLLLDPPRK-G---CAAEVLRTIIE-LKPERIVY 393 (431)
T ss_pred CEEEECcCCC-C---CCHHHHHHHHh-cCCCEEEE
Confidence 9999987632 1 23667776544 78877654
No 151
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.31 E-value=2.6e-06 Score=85.56 Aligned_cols=107 Identities=16% Similarity=0.112 Sum_probs=86.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEE-ecccccC---CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVS-EDMRTWN---APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~-~D~~~~~---~p~k~D 416 (626)
+.++||++|++.|.=+++.+.+... +.++++||.|+... .|+++.++.|+.++ |+++. +|..+.- ..+.||
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag~~~~-i~~~~~gdal~~l~~~~~~~fD 134 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAGVDDR-IELLLGGDALDVLSRLLDGSFD 134 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCC---CCeEEEEeCCHHHHHHHHHHHHHcCCcce-EEEEecCcHHHHHHhccCCCcc
Confidence 4578999999999998776666543 35999999999654 99999999999998 99999 5876642 358999
Q ss_pred EEEeccccccCCCCC--cHHHHHHHHHhcccCcEEEeccceeeEE
Q psy17734 417 IMVSELLGSFGDNEL--SPECLYAAQKYLKEDGISIPYNYTSYIA 459 (626)
Q Consensus 417 iIVSEllgsfg~~El--~pe~L~~~~r~LkpgGi~IP~~~t~y~a 459 (626)
+|+- |... -|++++.+.+.|+|||++|-+..-....
T Consensus 135 liFI-------DadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~ 172 (219)
T COG4122 135 LVFI-------DADKADYPEYLERALPLLRPGGLIVADNVLFGGR 172 (219)
T ss_pred EEEE-------eCChhhCHHHHHHHHHHhCCCcEEEEeecccCCc
Confidence 9965 3333 4899999999999999999887765543
No 152
>KOG1271|consensus
Probab=98.30 E-value=4e-06 Score=80.80 Aligned_cols=105 Identities=17% Similarity=0.239 Sum_probs=73.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEEec-
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMVSE- 421 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIVSE- 421 (626)
+|||+|||-|.+-..+ ++ -|-..+.++||-++.|+ .|.....++++.+. |++-+.|+.+-. .+.+||+|.=-
T Consensus 70 ~VlDLGtGNG~~L~~L---~~-egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~-I~f~q~DI~~~~~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQL---AK-EGFQSKLTGVDYSEKAVELAQNIAERDGFSNE-IRFQQLDITDPDFLSGQFDLVLDKG 144 (227)
T ss_pred ceeeccCCchHHHHHH---HH-hcCCCCccccccCHHHHHHHHHHHHhcCCCcc-eeEEEeeccCCcccccceeEEeecC
Confidence 8999999999987533 33 23334799999999998 55555667899987 999999998743 45789998541
Q ss_pred cccc---cCC--CCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 422 LLGS---FGD--NELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 422 llgs---fg~--~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
.++. .++ .+...-.++.+.+.|+|||+++-.++
T Consensus 145 T~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC 182 (227)
T KOG1271|consen 145 TLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC 182 (227)
T ss_pred ceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence 1111 111 11122356788899999999885544
No 153
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.29 E-value=6e-06 Score=84.66 Aligned_cols=99 Identities=20% Similarity=0.169 Sum_probs=75.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHH-HHHHHHHHHcCCCCCcEEEEEecccccC----CCCCc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSA-VVGLKYKKEEQWAQSDVTIVSEDMRTWN----APEKA 415 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a-~~a~~~~~~n~~~~~nV~vi~~D~~~~~----~p~k~ 415 (626)
.++.+|++.|+|+|.|+..++++.... .+|+..|.++.. ..|+++.+..++.+. |++.+.|+.+-. ....+
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~---G~v~t~E~~~~~~~~A~~n~~~~gl~~~-v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPT---GHVYTYEFREDRAEKARKNFERHGLDDN-VTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTT---SEEEEEESSHHHHHHHHHHHHHTTCCTT-EEEEES-GGCG--STT-TTSE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCC---eEEEccccCHHHHHHHHHHHHHcCCCCC-ceeEecceecccccccccCcc
Confidence 478999999999999998877776533 599999999864 599999999998775 999999996432 23679
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhc-ccCcEEE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYL-KEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~L-kpgGi~I 450 (626)
|.|+-++.. .-+++..+.+.| |+||.+.
T Consensus 115 DavfLDlp~-------Pw~~i~~~~~~L~~~gG~i~ 143 (247)
T PF08704_consen 115 DAVFLDLPD-------PWEAIPHAKRALKKPGGRIC 143 (247)
T ss_dssp EEEEEESSS-------GGGGHHHHHHHE-EEEEEEE
T ss_pred cEEEEeCCC-------HHHHHHHHHHHHhcCCceEE
Confidence 999887653 234888899999 8999765
No 154
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.22 E-value=1.6e-05 Score=77.85 Aligned_cols=121 Identities=19% Similarity=0.135 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCc
Q psy17734 320 IRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSD 398 (626)
Q Consensus 320 ~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~n 398 (626)
+.-++++..-+... ...+.+|||+-||+|.|+. +|..+.. .+|+.||.|..+. ..+++++.-+....
T Consensus 27 drVREalFNil~~~------~i~g~~~LDlFAGSGaLGl---EAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~- 94 (187)
T COG0742 27 DRVREALFNILAPD------EIEGARVLDLFAGSGALGL---EALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGE- 94 (187)
T ss_pred hHHHHHHHHhcccc------ccCCCEEEEecCCccHhHH---HHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccc-
Confidence 34456666666531 1367899999999999995 5666533 4999999999888 66777777776676
Q ss_pred EEEEEeccccc--CCCC--CccEEEeccccccCCCCCcH--HHHHH--HHHhcccCcEEEeccce
Q psy17734 399 VTIVSEDMRTW--NAPE--KADIMVSELLGSFGDNELSP--ECLYA--AQKYLKEDGISIPYNYT 455 (626)
Q Consensus 399 V~vi~~D~~~~--~~p~--k~DiIVSEllgsfg~~El~p--e~L~~--~~r~LkpgGi~IP~~~t 455 (626)
++++..|...+ .... +||+|..++.-. .+..+ ..+.. -..+|+|+|.++-....
T Consensus 95 ~~~~~~da~~~L~~~~~~~~FDlVflDPPy~---~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 95 ARVLRNDALRALKQLGTREPFDLVFLDPPYA---KGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred eEEEeecHHHHHHhcCCCCcccEEEeCCCCc---cchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 99999999854 2333 499999988632 23332 23333 23579999998855443
No 155
>KOG0820|consensus
Probab=98.21 E-value=5.5e-06 Score=84.47 Aligned_cols=74 Identities=28% Similarity=0.338 Sum_probs=60.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
+..+||++|.|||.|+..++++|+ +|+|||++|.++.-+ +..+....+++ .+++.||.-..+.| .+|++|+
T Consensus 58 ~tD~VLEvGPGTGnLT~~lLe~~k------kVvA~E~Dprmvael~krv~gtp~~~k-LqV~~gD~lK~d~P-~fd~cVs 129 (315)
T KOG0820|consen 58 PTDVVLEVGPGTGNLTVKLLEAGK------KVVAVEIDPRMVAELEKRVQGTPKSGK-LQVLHGDFLKTDLP-RFDGCVS 129 (315)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcC------eEEEEecCcHHHHHHHHHhcCCCccce-eeEEecccccCCCc-ccceeec
Confidence 678999999999999999898885 999999999776433 33333444577 99999999888774 6999999
Q ss_pred ccc
Q psy17734 421 ELL 423 (626)
Q Consensus 421 Ell 423 (626)
++.
T Consensus 130 NlP 132 (315)
T KOG0820|consen 130 NLP 132 (315)
T ss_pred cCC
Confidence 875
No 156
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.21 E-value=1.3e-05 Score=85.33 Aligned_cols=77 Identities=10% Similarity=0.104 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc-CCCCCcEEEEE-ecccccC-----CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE-QWAQSDVTIVS-EDMRTWN-----APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n-~~~~~nV~vi~-~D~~~~~-----~p~ 413 (626)
+..+|||||||+|.+..++ +.+..+ .+++|+|+++.|+ .|++++..| ++.++ |+++. .|..++. ..+
T Consensus 114 ~~~~vLDIGtGag~I~~lL--a~~~~~--~~~~atDId~~Al~~A~~Nv~~Np~l~~~-I~~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLI--GVHEYG--WRFVGSDIDPQALASAQAIISANPGLNGA-IRLRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHH--HhhCCC--CEEEEEeCCHHHHHHHHHHHHhccCCcCc-EEEEEccchhhhhhcccccCC
Confidence 4578999999999776432 333334 5999999999887 888899999 89988 99974 4443332 246
Q ss_pred CccEEEeccc
Q psy17734 414 KADIMVSELL 423 (626)
Q Consensus 414 k~DiIVSEll 423 (626)
+||+|||++.
T Consensus 189 ~fDlivcNPP 198 (321)
T PRK11727 189 RFDATLCNPP 198 (321)
T ss_pred ceEEEEeCCC
Confidence 8999999997
No 157
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.19 E-value=4.8e-06 Score=87.72 Aligned_cols=76 Identities=21% Similarity=0.215 Sum_probs=58.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||||||+|.++..++..+ .+|+|+|.++.++ .+++.....+..++ ++++++|+.+... .++|+||+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~------~~V~avEiD~~li~~l~~~~~~~~~~~~-v~ii~~Dal~~~~-~~~d~Vva 107 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA------KKVIAIEIDPRMVAELKKRFQNSPLASK-LEVIEGDALKTEF-PYFDVCVA 107 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC------CcEEEEECCHHHHHHHHHHHHhcCCCCc-EEEEECCHhhhcc-cccCEEEe
Confidence 56789999999999997654432 3899999999887 55555555554454 9999999988766 47899999
Q ss_pred ccccc
Q psy17734 421 ELLGS 425 (626)
Q Consensus 421 Ellgs 425 (626)
++.-+
T Consensus 108 NlPY~ 112 (294)
T PTZ00338 108 NVPYQ 112 (294)
T ss_pred cCCcc
Confidence 87643
No 158
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.19 E-value=6.1e-06 Score=81.34 Aligned_cols=96 Identities=18% Similarity=0.233 Sum_probs=61.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc-cC-C-CCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT-WN-A-PEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~-~~-~-p~k~DiI 418 (626)
++.+|||+|||+|.++..++. ..+ ..++|||.++.++...+. . +++++.+|+.+ +. . +++||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~---~~~--~~~~giD~s~~~i~~a~~-------~-~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRD---EKQ--VRGYGIEIDQDGVLACVA-------R-GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHh---ccC--CcEEEEeCCHHHHHHHHH-------c-CCeEEEEEhhhcccccCCCCcCEE
Confidence 356899999999999754322 223 478999999876633221 1 38889999876 32 2 3689999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++...-.. -+....+++.+.|.++++.+.+|.
T Consensus 80 i~~~~l~~--~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 80 ILSQTLQA--TRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred EEhhHhHc--CcCHHHHHHHHHHhCCeEEEEcCC
Confidence 99542111 122355777777776655455443
No 159
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.19 E-value=5.5e-06 Score=90.04 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=87.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-----CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~ 415 (626)
++++||++-|=||.++..|+. .|+ .+|++||+|..++ .++++..-|++....+.+|++|+.++-- .++|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~----gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f 291 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAAL----GGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF 291 (393)
T ss_pred cCCeEEEecccCcHHHHHHHh----cCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence 478999999999999964443 444 4999999999888 8999999999864449999999988732 2589
Q ss_pred cEEEeccccccCCCCCc--------HHHHHHHHHhcccCcEEEeccceeeEE
Q psy17734 416 DIMVSELLGSFGDNELS--------PECLYAAQKYLKEDGISIPYNYTSYIA 459 (626)
Q Consensus 416 DiIVSEllgsfg~~El~--------pe~L~~~~r~LkpgGi~IP~~~t~y~a 459 (626)
|+||.++. +|.-+... ..+++.+.+.|+|||+++-++++..+.
T Consensus 292 DlIilDPP-sF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~ 342 (393)
T COG1092 292 DLIILDPP-SFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS 342 (393)
T ss_pred cEEEECCc-ccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC
Confidence 99999987 45443331 345667788999999999888765544
No 160
>KOG3191|consensus
Probab=98.17 E-value=1.4e-05 Score=77.10 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
...+++||||+|..+.+++.. .+.+....|.|.||.|. .+++..+.|+- ++.+|..|.-.--.++++|+++-+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~---i~~~~~~latDiNp~A~~~Tl~TA~~n~~---~~~~V~tdl~~~l~~~~VDvLvfN 117 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASV---IGPQALYLATDINPEALEATLETARCNRV---HIDVVRTDLLSGLRNESVDVLVFN 117 (209)
T ss_pred ceeEEEecCCcchHHHHHHHh---cCCCceEEEecCCHHHHHHHHHHHHhcCC---ccceeehhHHhhhccCCccEEEEC
Confidence 468999999999999764433 23446899999999887 66777777765 389999998775445999999886
Q ss_pred ccc----------------ccCCCCC---cHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHH
Q psy17734 422 LLG----------------SFGDNEL---SPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFT 468 (626)
Q Consensus 422 llg----------------sfg~~El---~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~ 468 (626)
..- ..|..++ +..++......|.|.|.+ |+..+.+.+...
T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~-------Ylv~~~~N~p~e 176 (209)
T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVF-------YLVALRANKPKE 176 (209)
T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceE-------EeeehhhcCHHH
Confidence 521 0111112 233444455566777764 666676665543
No 161
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.15 E-value=7.3e-06 Score=84.16 Aligned_cols=108 Identities=14% Similarity=0.031 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--------AP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--------~p 412 (626)
+.++||+||+++|.=+.+.+++.. ...+|+++|.++... .|++...+.|+.++ |+++.||..+.- ..
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~---~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~-I~~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALP---EDGKILAMDINRENYELGLPVIQKAGVAHK-IDFREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCC---CCCEEEEEeCCHHHHHHHHHHHHHCCCCCc-eEEEeccHHHHHHHHHhccccC
Confidence 457899999999988776555543 235999999998654 88999999999988 999999987751 12
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeE
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYI 458 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~ 458 (626)
++||+|+-+- +.+.-+..++.+.+.|+|||++|-+..-...
T Consensus 155 ~~fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G 195 (247)
T PLN02589 155 GTFDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYDNTLWNG 195 (247)
T ss_pred CcccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEcCCCCCC
Confidence 6899997632 2233477888888999999999877654443
No 162
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.14 E-value=1.1e-05 Score=83.36 Aligned_cols=72 Identities=21% Similarity=0.245 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++.+|||+|||+|.++..+++. + .+|+|||.++.++ .+.+... .. + ||+++++|..++..+ .+|.||+
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~----~--~~v~~vEid~~~~~~l~~~~~--~~-~-~v~ii~~D~~~~~~~-~~d~Vv~ 97 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKR----A--KKVYAIELDPRLAEFLRDDEI--AA-G-NVEIIEGDALKVDLP-EFNKVVS 97 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHh----C--CEEEEEECCHHHHHHHHHHhc--cC-C-CEEEEEeccccCCch-hceEEEE
Confidence 5678999999999999755443 2 3999999999877 4443332 22 3 599999999998764 5899999
Q ss_pred cccc
Q psy17734 421 ELLG 424 (626)
Q Consensus 421 Ellg 424 (626)
++.-
T Consensus 98 NlPy 101 (258)
T PRK14896 98 NLPY 101 (258)
T ss_pred cCCc
Confidence 9874
No 163
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.14 E-value=5.2e-06 Score=86.99 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=82.5
Q ss_pred hhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCc----hHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHH
Q psy17734 312 FEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRG----PLVTASLNAAKEANRKVRVYAVEKNMSAV-VGL 386 (626)
Q Consensus 312 fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG----~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~ 386 (626)
|-.|+.-.+..++.+. .. .+..+|+.+||+|| .++|.+..+....+.+++|+|.|+|+.++ .|+
T Consensus 96 FFRd~~~f~~L~~~~~----~~-------~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar 164 (287)
T PRK10611 96 FFREAHHFPILAEHAR----RR-------SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKAR 164 (287)
T ss_pred ccCCcHHHHHHHHHHH----hc-------CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHH
Confidence 6677766655544331 10 12479999999999 34444444332222247999999999877 443
Q ss_pred HHH------------------HH------------cCCCCCcEEEEEecccccC--CCCCccEEEec-cccccCCCCCcH
Q psy17734 387 KYK------------------KE------------EQWAQSDVTIVSEDMRTWN--APEKADIMVSE-LLGSFGDNELSP 433 (626)
Q Consensus 387 ~~~------------------~~------------n~~~~~nV~vi~~D~~~~~--~p~k~DiIVSE-llgsfg~~El~p 433 (626)
+-+ .. .++... |++...|+.+.+ .++++|+|+|. .+.+| +.+...
T Consensus 165 ~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~-V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-~~~~~~ 242 (287)
T PRK10611 165 SGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANY-VDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-DKTTQE 242 (287)
T ss_pred hCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHcc-CEEEcccCCCCCCccCCCcceeeHhhHHhcC-CHHHHH
Confidence 321 00 012234 788888887643 24789999994 44444 445457
Q ss_pred HHHHHHHHhcccCcEEEeccce
Q psy17734 434 ECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 434 e~L~~~~r~LkpgGi~IP~~~t 455 (626)
.++..+.+.|+|||.++-....
T Consensus 243 ~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 243 RILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred HHHHHHHHHhCCCcEEEEeCcc
Confidence 7889999999999998755443
No 164
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.13 E-value=1.2e-05 Score=81.93 Aligned_cols=132 Identities=23% Similarity=0.249 Sum_probs=83.0
Q ss_pred hhHHHHhhCCHHHHHHHHHHHHHHH---h-hccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHH
Q psy17734 306 SFTYEVFEKDPIKYIRYQEAVQQAL---L-DRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMS 381 (626)
Q Consensus 306 s~tYe~fe~D~~ry~~Y~~AI~~al---~-d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~ 381 (626)
...|+.+++|+.....|.+++...- . +.+.......+..+|+|||+|+|.++..++++-. + .+++.+|. |.
T Consensus 60 ~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P--~--l~~~v~Dl-p~ 134 (241)
T PF00891_consen 60 TPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARAYP--N--LRATVFDL-PE 134 (241)
T ss_dssp S-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHST--T--SEEEEEE--HH
T ss_pred CcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHHCC--C--Ccceeecc-Hh
Confidence 3467778888877777776654421 1 1111111122456899999999999975544332 3 68999998 44
Q ss_pred HH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE-eccccccCCCCCcHHHHHHHHHhcccC--cEEEecc
Q psy17734 382 AV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV-SELLGSFGDNELSPECLYAAQKYLKED--GISIPYN 453 (626)
Q Consensus 382 a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV-SEllgsfg~~El~pe~L~~~~r~Lkpg--Gi~IP~~ 453 (626)
.+ .+.+ .++ |+++.+|+. -+.|. +|+++ +..++.+.+ +....+|..+.+.|+|| |.++-..
T Consensus 135 v~~~~~~-------~~r-v~~~~gd~f-~~~P~-~D~~~l~~vLh~~~d-~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 135 VIEQAKE-------ADR-VEFVPGDFF-DPLPV-ADVYLLRHVLHDWSD-EDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp HHCCHHH-------TTT-EEEEES-TT-TCCSS-ESEEEEESSGGGS-H-HHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred hhhcccc-------ccc-cccccccHH-hhhcc-ccceeeehhhhhcch-HHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 33 3333 566 999999998 45566 99975 455555443 33466789999999998 8866443
No 165
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.09 E-value=4.9e-05 Score=78.66 Aligned_cols=124 Identities=21% Similarity=0.217 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcE
Q psy17734 321 RYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDV 399 (626)
Q Consensus 321 ~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV 399 (626)
--++.|.+++..+..+ ....+||||-||.|-...-++..... ....|.-.|.++..+ ..++.++.+|+.+. +
T Consensus 118 ~l~~~i~~ai~~L~~~----g~pvrIlDIAaG~GRYvlDal~~~~~--~~~~i~LrDys~~Nv~~g~~li~~~gL~~i-~ 190 (311)
T PF12147_consen 118 HLEELIRQAIARLREQ----GRPVRILDIAAGHGRYVLDALEKHPE--RPDSILLRDYSPINVEKGRALIAERGLEDI-A 190 (311)
T ss_pred HHHHHHHHHHHHHHhc----CCceEEEEeccCCcHHHHHHHHhCCC--CCceEEEEeCCHHHHHHHHHHHHHcCCccc-e
Confidence 3456666666543221 25579999999999998544433321 135899999999665 77778888999987 8
Q ss_pred EEEEecccccC----CCCCccE-EEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 400 TIVSEDMRTWN----APEKADI-MVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 400 ~vi~~D~~~~~----~p~k~Di-IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.++|+.+-. ...+.++ |||-+.+.|.+|++....|.++.+.+.|||.+|-
T Consensus 191 ~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIy 247 (311)
T PF12147_consen 191 RFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIY 247 (311)
T ss_pred EEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEE
Confidence 99999988753 2245677 6788888899999888889999999999999983
No 166
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.07 E-value=1.5e-05 Score=86.59 Aligned_cols=98 Identities=16% Similarity=0.093 Sum_probs=76.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhc-CCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--CCCccEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEA-NRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--PEKADIM 418 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~-g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~k~DiI 418 (626)
+.+|||+.||+|.++. +++++. |+ .+|+++|+|+.|+ .++++++.|+.. +++++++|...+-. ..+||+|
T Consensus 45 ~~~vLD~faGsG~rgi---r~a~e~~ga-~~Vv~nD~n~~Av~~i~~N~~~N~~~--~~~v~~~Da~~~l~~~~~~fDvI 118 (374)
T TIGR00308 45 YINIADALSASGIRAI---RYAHEIEGV-REVFANDINPKAVESIKNNVEYNSVE--NIEVPNEDAANVLRYRNRKFHVI 118 (374)
T ss_pred CCEEEECCCchhHHHH---HHHhhCCCC-CEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEchhHHHHHHHhCCCCCEE
Confidence 3689999999999995 555553 44 4999999999998 777888888875 59999999987732 3679999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
..++.| ....+++.+-+.++++|++.-.
T Consensus 119 dlDPfG------s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 119 DIDPFG------TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EeCCCC------CcHHHHHHHHHhcccCCEEEEE
Confidence 987743 1136889888899999986543
No 167
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.06 E-value=3.9e-06 Score=83.82 Aligned_cols=102 Identities=20% Similarity=0.180 Sum_probs=77.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCC----CcEEEEEecccccC--C-CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQ----SDVTIVSEDMRTWN--A-PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~----~nV~vi~~D~~~~~--~-p~k 414 (626)
++.+|||...|-|-.+..+++.++ .+|+.||+||+.+... +.|.|+. .+|++|.||+.++- + ++.
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA-----~~VitvEkdp~VLeLa---~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGA-----IHVITVEKDPNVLELA---KLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCC-----cEEEEEeeCCCeEEee---ccCCCCccccccccEEecccHHHHHhcCCccc
Confidence 578999999999998865544443 5999999999876222 2244432 24899999998763 2 378
Q ss_pred ccEEEeccccccCCCCC-cHHHHHHHHHhcccCcEEEe
Q psy17734 415 ADIMVSELLGSFGDNEL-SPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El-~pe~L~~~~r~LkpgGi~IP 451 (626)
||.||-++.-+....|+ +.++.+...|.|||||.++=
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 99999999876666677 57788999999999999873
No 168
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.05 E-value=9.6e-06 Score=84.50 Aligned_cols=72 Identities=22% Similarity=0.235 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCC-ccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEK-ADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k-~DiIVS 420 (626)
++.+|||+|||+|.++..++.. + .+|+|+|.++.+...++... .. + +++++++|+.++..+.- .|.||+
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~----~--~~v~avE~d~~~~~~~~~~~-~~--~-~v~~i~~D~~~~~~~~~~~~~vv~ 111 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLER----A--AKVTAVEIDRDLAPILAETF-AE--D-NLTIIEGDALKVDLSELQPLKVVA 111 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHh----C--CcEEEEECCHHHHHHHHHhh-cc--C-ceEEEEChhhcCCHHHcCcceEEE
Confidence 4578999999999999654433 2 28999999998774333221 11 3 49999999999876532 589999
Q ss_pred ccc
Q psy17734 421 ELL 423 (626)
Q Consensus 421 Ell 423 (626)
++.
T Consensus 112 NlP 114 (272)
T PRK00274 112 NLP 114 (272)
T ss_pred eCC
Confidence 886
No 169
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.05 E-value=2.8e-06 Score=84.61 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=65.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc---CCCCCccEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW---NAPEKADIM 418 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~---~~p~k~DiI 418 (626)
-.++||+|||||..+..+-..+ .++++||+|.+++ .+..+ +.=+ ++.++|...+ ..++++|+|
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a------~~ltGvDiS~nMl~kA~eK----g~YD---~L~~Aea~~Fl~~~~~er~DLi 192 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA------DRLTGVDISENMLAKAHEK----GLYD---TLYVAEAVLFLEDLTQERFDLI 192 (287)
T ss_pred cceeeecccCcCcccHhHHHHH------hhccCCchhHHHHHHHHhc----cchH---HHHHHHHHHHhhhccCCcccch
Confidence 3689999999999987543333 3899999999887 33322 1111 2333443322 235899999
Q ss_pred Ee-ccccccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 419 VS-ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 419 VS-Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
++ +.|-+.|.-|. ++-++...|+|||.++.+.-+
T Consensus 193 ~AaDVl~YlG~Le~---~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 193 VAADVLPYLGALEG---LFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred hhhhHHHhhcchhh---HHHHHHHhcCCCceEEEEecc
Confidence 88 55556655454 778889999999998876443
No 170
>PRK00536 speE spermidine synthase; Provisional
Probab=98.04 E-value=5.5e-05 Score=78.28 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH--HcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK--EEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~--~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
..++||.+|.|-|...+..++.- .+|+-||++++.+ .+++..- ..++.|.+|+++.. +.+- ..++||+|
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~------~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVI 143 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD------THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLI 143 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC------CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEE
Confidence 45789999999999987655432 3999999999877 5544221 23577767999872 2221 13789999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEe
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAP 460 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~ap 460 (626)
|.+.+ -.++..+.+.+.|+|||+++-|+.+.+..+
T Consensus 144 IvDs~-------~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~ 178 (262)
T PRK00536 144 ICLQE-------PDIHKIDGLKRMLKEDGVFISVAKHPLLEH 178 (262)
T ss_pred EEcCC-------CChHHHHHHHHhcCCCcEEEECCCCcccCH
Confidence 99753 126788889999999999999998777654
No 171
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.03 E-value=3.6e-05 Score=76.35 Aligned_cols=101 Identities=20% Similarity=0.322 Sum_probs=68.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc----CCCCCccEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW----NAPEKADIM 418 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~----~~p~k~DiI 418 (626)
.++||||||.|-+... .|... .+..++|||+....+ .+.+.+...++. ||.++++|+..+ ..++.+|-|
T Consensus 19 ~l~lEIG~G~G~~l~~--~A~~~--Pd~n~iGiE~~~~~v~~a~~~~~~~~l~--Nv~~~~~da~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIE--LAKRN--PDINFIGIEIRKKRVAKALRKAEKRGLK--NVRFLRGDARELLRRLFPPGSVDRI 92 (195)
T ss_dssp EEEEEET-TTSHHHHH--HHHHS--TTSEEEEEES-HHHHHHHHHHHHHHTTS--SEEEEES-CTTHHHHHSTTTSEEEE
T ss_pred CeEEEecCCCCHHHHH--HHHHC--CCCCEEEEecchHHHHHHHHHHHhhccc--ceEEEEccHHHHHhhcccCCchheE
Confidence 4899999999999853 23332 336999999998765 666666677776 899999999883 235778887
Q ss_pred EeccccccCC-----CCC-cHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGD-----NEL-SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~-----~El-~pe~L~~~~r~LkpgGi~I 450 (626)
.-...+-+-- ..+ .+++++...+.|+|||.+.
T Consensus 93 ~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~ 130 (195)
T PF02390_consen 93 YINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELY 130 (195)
T ss_dssp EEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEE
T ss_pred EEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEE
Confidence 6644433222 122 3889999999999999763
No 172
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.02 E-value=1.3e-05 Score=78.54 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-C-C-CCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-N-A-PEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-~-~-p~k~DiI 418 (626)
++.+|||+|||.|.|...+. .-+ +++.+|||.++..+.+.-. + .|.|+++|+.+- . . +..||.|
T Consensus 13 pgsrVLDLGCGdG~LL~~L~-~~k----~v~g~GvEid~~~v~~cv~---r-----Gv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLK-DEK----QVDGYGVEIDPDNVAACVA---R-----GVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred CCCEEEecCCCchHHHHHHH-Hhc----CCeEEEEecCHHHHHHHHH---c-----CCCEEECCHHHhHhhCCCCCccEE
Confidence 67899999999999964322 212 3699999999866533222 2 388999999863 2 2 3789998
Q ss_pred Ee-ccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 419 VS-ELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 419 VS-Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
|. ..+-..- ...++|+++-|.-|..=+.+|..
T Consensus 80 IlsqtLQ~~~---~P~~vL~EmlRVgr~~IVsFPNF 112 (193)
T PF07021_consen 80 ILSQTLQAVR---RPDEVLEEMLRVGRRAIVSFPNF 112 (193)
T ss_pred ehHhHHHhHh---HHHHHHHHHHHhcCeEEEEecCh
Confidence 75 2221110 01346666666655555666663
No 173
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.02 E-value=2e-05 Score=82.41 Aligned_cols=111 Identities=14% Similarity=0.156 Sum_probs=76.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----CCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN----APEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~----~p~k~D 416 (626)
++++|||+-|=||.++..|+. .|+ .+|++||.|..++ .++++...|++....++++.+|+.++- -.++||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~----gGA-~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA----GGA-KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH----TTE-SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EE
T ss_pred CCCceEEecCCCCHHHHHHHH----CCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCC
Confidence 467999999999999964433 444 4999999999887 888999999987334999999987642 236999
Q ss_pred EEEeccccccCCCCC-----cHHHHHHHHHhcccCcEEEeccceeeE
Q psy17734 417 IMVSELLGSFGDNEL-----SPECLYAAQKYLKEDGISIPYNYTSYI 458 (626)
Q Consensus 417 iIVSEllgsfg~~El-----~pe~L~~~~r~LkpgGi~IP~~~t~y~ 458 (626)
+||.++. +|.-... ..+++..+.++|+|||+++-++++-.+
T Consensus 198 ~IIlDPP-sF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i 243 (286)
T PF10672_consen 198 LIILDPP-SFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHI 243 (286)
T ss_dssp EEEE--S-SEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS
T ss_pred EEEECCC-CCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 9999997 4433222 134666777899999999877664433
No 174
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.01 E-value=4.5e-05 Score=82.45 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=65.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC----------
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP---------- 412 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p---------- 412 (626)
.+|||+|||+|.++..+.+. + .+|+|||.++.++ .++++.+.|+.. |++++.+|+.++-..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~---~---~~v~~vE~~~~av~~a~~n~~~~~~~--~v~~~~~d~~~~~~~~~~~~~~~~~ 270 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN---F---RRVLATEIAKPSVNAAQYNIAANNID--NVQIIRMSAEEFTQAMNGVREFRRL 270 (353)
T ss_pred CcEEEEeccccHHHHHHHHh---C---CEEEEEECCHHHHHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHhhccccccc
Confidence 36999999999999633222 2 3999999999887 778888888875 599999999874211
Q ss_pred -------CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 413 -------EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 413 -------~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.++|+|+.++.-. | ..+++++.+.+ |+++++
T Consensus 271 ~~~~~~~~~~d~v~lDPPR~-G---~~~~~l~~l~~---~~~ivY 308 (353)
T TIGR02143 271 KGIDLKSYNCSTIFVDPPRA-G---LDPDTCKLVQA---YERILY 308 (353)
T ss_pred cccccccCCCCEEEECCCCC-C---CcHHHHHHHHc---CCcEEE
Confidence 2379999998742 2 23556666543 555433
No 175
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.01 E-value=1.3e-05 Score=78.29 Aligned_cols=102 Identities=13% Similarity=0.131 Sum_probs=70.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcC-----CccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEAN-----RKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g-----~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k 414 (626)
++.+|+|--||+|.+...++..+.... .+.+++|+|+++.++ .++++....+..+. |.+.+.|++++. .++.
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~-i~~~~~D~~~l~~~~~~ 106 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY-IDFIQWDARELPLPDGS 106 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG-EEEEE--GGGGGGTTSB
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc-eEEEecchhhcccccCC
Confidence 567899999999999876665554321 112499999999887 88888888898887 999999999999 4579
Q ss_pred ccEEEeccccccCCCCC--------cHHHHHHHHHhcccC
Q psy17734 415 ADIMVSELLGSFGDNEL--------SPECLYAAQKYLKED 446 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El--------~pe~L~~~~r~Lkpg 446 (626)
+|.||+++. ||.... ...+++.+.+.|++.
T Consensus 107 ~d~IvtnPP--yG~r~~~~~~~~~ly~~~~~~~~~~l~~~ 144 (179)
T PF01170_consen 107 VDAIVTNPP--YGRRLGSKKDLEKLYRQFLRELKRVLKPR 144 (179)
T ss_dssp SCEEEEE----STTSHCHHHHHHHHHHHHHHHHHCHSTTC
T ss_pred CCEEEECcc--hhhhccCHHHHHHHHHHHHHHHHHHCCCC
Confidence 999999985 333222 134566677778873
No 176
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.01 E-value=5.2e-05 Score=82.23 Aligned_cols=90 Identities=18% Similarity=0.159 Sum_probs=64.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--C---------
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--A--------- 411 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~--------- 411 (626)
.+|||++||+|.++..+.+.+ .+|+|||.++.|+ .++++.+.|+.. |++++.+|+.++- .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~------~~v~~vE~~~~ai~~a~~N~~~~~~~--~v~~~~~d~~~~l~~~~~~~~~~~~ 279 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNF------RRVLATEISKPSVAAAQYNIAANGID--NVQIIRMSAEEFTQAMNGVREFNRL 279 (362)
T ss_pred CeEEEEeccccHHHHHHHhhC------CEEEEEECCHHHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHhhccccccc
Confidence 469999999999996433222 3999999999887 777888888875 5999999997741 1
Q ss_pred ------CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 412 ------PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 412 ------p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
..++|+||.++.- -| ..++++..+.+ ++++
T Consensus 280 ~~~~~~~~~~D~v~lDPPR-~G---~~~~~l~~l~~---~~~i 315 (362)
T PRK05031 280 KGIDLKSYNFSTIFVDPPR-AG---LDDETLKLVQA---YERI 315 (362)
T ss_pred ccccccCCCCCEEEECCCC-CC---CcHHHHHHHHc---cCCE
Confidence 1258999999984 22 23556665543 5554
No 177
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.97 E-value=2.5e-05 Score=75.96 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcC--CCCCcEEEEEecccc-c----CCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQ--WAQSDVTIVSEDMRT-W----NAP 412 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~--~~~~nV~vi~~D~~~-~----~~p 412 (626)
.++++||++|||+|..++.++.. .+. .+|++-|.++ +. ..+.++..|+ ...+ |++..-|-.+ . ..+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~---~~~-~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~-v~v~~L~Wg~~~~~~~~~~ 117 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKL---FGA-ARVVLTDYNE-VLELLRRNIELNGSLLDGR-VSVRPLDWGDELDSDLLEP 117 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT----T--SEEEEEE-S--HHHHHHHHHHTT---------EEEE--TTS-HHHHHHS-
T ss_pred cCCceEEEECCccchhHHHHHhc---cCC-ceEEEeccch-hhHHHHHHHHhcccccccc-ccCcEEEecCccccccccc
Confidence 46789999999999999754443 122 4999999999 54 6667777776 5555 8887765432 1 123
Q ss_pred CCccEEEe-ccccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 413 EKADIMVS-ELLGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 413 ~k~DiIVS-Ellgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
.+||+|+. +.+ .+.+..+.+++.+.++|+++|.
T Consensus 118 ~~~D~IlasDv~---Y~~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 118 HSFDVILASDVL---YDEELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp SSBSEEEEES-----S-GGGHHHHHHHHHHHBTT-TT
T ss_pred ccCCEEEEeccc---chHHHHHHHHHHHHHHhCCCCE
Confidence 58999876 443 2345557788999999999887
No 178
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.95 E-value=2.1e-05 Score=80.94 Aligned_cols=75 Identities=23% Similarity=0.328 Sum_probs=60.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCC--CccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPE--KADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~--k~DiIV 419 (626)
++.+|++||+|.|.|+..+++.++ +|+|||+++..+..++.... .. + |+++|++|+-..+.+. +.+.||
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~------~v~aiEiD~~l~~~L~~~~~-~~-~-n~~vi~~DaLk~d~~~l~~~~~vV 100 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAA------RVTAIEIDRRLAEVLKERFA-PY-D-NLTVINGDALKFDFPSLAQPYKVV 100 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC------eEEEEEeCHHHHHHHHHhcc-cc-c-ceEEEeCchhcCcchhhcCCCEEE
Confidence 467999999999999987666553 89999999988766655432 22 3 5999999999999876 789999
Q ss_pred eccccc
Q psy17734 420 SELLGS 425 (626)
Q Consensus 420 SEllgs 425 (626)
+++.-+
T Consensus 101 aNlPY~ 106 (259)
T COG0030 101 ANLPYN 106 (259)
T ss_pred EcCCCc
Confidence 998743
No 179
>KOG2361|consensus
Probab=97.93 E-value=9.3e-06 Score=81.62 Aligned_cols=109 Identities=22% Similarity=0.234 Sum_probs=76.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHH-HHHcCCCCCcEEEEEecccccC-----CCCCccEE
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKY-KKEEQWAQSDVTIVSEDMRTWN-----APEKADIM 418 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~-~~~n~~~~~nV~vi~~D~~~~~-----~p~k~DiI 418 (626)
+||+||||-|..+.-.++-.+.. +.+|+|+|-+|.|+...+. ...+. .+ +.....|+..-. .++.+|++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~--~l~v~acDfsp~Ai~~vk~~~~~~e--~~-~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNN--RLKVYACDFSPRAIELVKKSSGYDE--SR-VEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hheeeccCCCcccchhhhcCCCC--CeEEEEcCCChHHHHHHHhccccch--hh-hcccceeccchhccCCCCcCccceE
Confidence 79999999998876555444322 2799999999999844443 22222 23 555555554322 23689999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeE
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYI 458 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~ 458 (626)
+.-..-|....|.+...++.+.++|||||.++-..|-.|-
T Consensus 149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 8755555556667788899999999999999999887763
No 180
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.91 E-value=4.9e-05 Score=77.03 Aligned_cols=102 Identities=14% Similarity=0.066 Sum_probs=65.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHH-------H----cCC-CCCcEEEEEeccccc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKK-------E----EQW-AQSDVTIVSEDMRTW 409 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~-------~----n~~-~~~nV~vi~~D~~~~ 409 (626)
++.+||+.|||.|.-+.+++. .| .+|+|||.++.|+......+ . ... +. +|+++++|..++
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~----~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~-~i~~~~gD~f~l 115 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS----KG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGD-DIEIYVADIFNL 115 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh----CC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccC-ceEEEEccCcCC
Confidence 356999999999998865433 24 59999999999884432210 0 001 23 499999999998
Q ss_pred CCC----CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 410 NAP----EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 410 ~~p----~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..+ ++||.|.=--.-..+..+.-......+.++|+|||.++
T Consensus 116 ~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 116 PKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred CccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 642 57999753111111111112445667788999999755
No 181
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.90 E-value=5.9e-05 Score=74.83 Aligned_cols=125 Identities=21% Similarity=0.248 Sum_probs=74.3
Q ss_pred hhHHHHhhCCHHHHHHHHHHHHHHHhhccCCC--------cCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEe
Q psy17734 306 SFTYEVFEKDPIKYIRYQEAVQQALLDRVSPE--------QADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVE 377 (626)
Q Consensus 306 s~tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~--------~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE 377 (626)
...++.|.+||.-++.|.+...+.+..|-... ....+..+|.|+|||.+.|+. +.. .+.+|+..|
T Consensus 28 ~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~----~~~---~~~~V~SfD 100 (219)
T PF05148_consen 28 EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAK----AVP---NKHKVHSFD 100 (219)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHH----H-----S---EEEEE
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHH----hcc---cCceEEEee
Confidence 34567788898888888887777665432110 012245799999999999972 222 125899999
Q ss_pred CCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEecc--ccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 378 KNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSEL--LGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 378 ~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEl--lgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
.-. .| + .|+.+||..++++ +.+|++|.-| || ...+.++.++.|.||+||++.-...
T Consensus 101 Lva----------~n---~---~Vtacdia~vPL~~~svDv~VfcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV 159 (219)
T PF05148_consen 101 LVA----------PN---P---RVTACDIANVPLEDESVDVAVFCLSLMG-----TNWPDFIREANRVLKPGGILKIAEV 159 (219)
T ss_dssp SS-----------SS---T---TEEES-TTS-S--TT-EEEEEEES---S-----S-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccC----------CC---C---CEEEecCccCcCCCCceeEEEEEhhhhC-----CCcHHHHHHHHheeccCcEEEEEEe
Confidence 763 11 2 2556999999886 7899998744 43 2468899999999999998764444
Q ss_pred eeeE
Q psy17734 455 TSYI 458 (626)
Q Consensus 455 t~y~ 458 (626)
++-.
T Consensus 160 ~SRf 163 (219)
T PF05148_consen 160 KSRF 163 (219)
T ss_dssp GGG-
T ss_pred cccC
Confidence 4433
No 182
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.89 E-value=2e-05 Score=78.20 Aligned_cols=138 Identities=20% Similarity=0.206 Sum_probs=75.8
Q ss_pred hhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCc----hHHHHHHHHHhhc-CCccEEEEEeCCHHHH-HH
Q psy17734 312 FEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRG----PLVTASLNAAKEA-NRKVRVYAVEKNMSAV-VG 385 (626)
Q Consensus 312 fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG----~Ls~~al~Aa~~~-g~~~~V~AVE~np~a~-~a 385 (626)
|-.|+.-.+..++.+...+.+... ..+..+|+.+||+|| .|++.+..+.... +.+.+|+|.|.|+.++ .|
T Consensus 5 FFRd~~~f~~l~~~vlp~~~~~~~----~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~A 80 (196)
T PF01739_consen 5 FFRDPEQFEALRDEVLPPLLARAR----PGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKA 80 (196)
T ss_dssp TTTTTTHHHHHHHHHH-------C----S-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhhccccC----CCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHH
Confidence 666776667776666633222111 124579999999999 3444433322222 2257999999999877 44
Q ss_pred HHHH--------------HH-------cCC------CCCcEEEEEecccc-cCCCCCccEEEe-ccccccCCCCCcHHHH
Q psy17734 386 LKYK--------------KE-------EQW------AQSDVTIVSEDMRT-WNAPEKADIMVS-ELLGSFGDNELSPECL 436 (626)
Q Consensus 386 ~~~~--------------~~-------n~~------~~~nV~vi~~D~~~-~~~p~k~DiIVS-Ellgsfg~~El~pe~L 436 (626)
++-+ .+ ++| .+ +|++...|..+ ....+++|+|+| +.|-+| +.+....++
T Consensus 81 r~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~-~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF-~~~~~~~vl 158 (196)
T PF01739_consen 81 RAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRK-MVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF-DPETQQRVL 158 (196)
T ss_dssp HHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHT-TEEEEE--TT-S------EEEEEE-SSGGGS--HHHHHHHH
T ss_pred HhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcC-ceEEEecccCCCCcccCCccEEEecCEEEEe-CHHHHHHHH
Confidence 3311 00 011 12 48899988888 444589999999 566555 445457788
Q ss_pred HHHHHhcccCcEEEeccce
Q psy17734 437 YAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 437 ~~~~r~LkpgGi~IP~~~t 455 (626)
+...+.|+|||.++-....
T Consensus 159 ~~l~~~L~pgG~L~lG~sE 177 (196)
T PF01739_consen 159 RRLHRSLKPGGYLFLGHSE 177 (196)
T ss_dssp HHHGGGEEEEEEEEE-TT-
T ss_pred HHHHHHcCCCCEEEEecCc
Confidence 8999999999998865543
No 183
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.87 E-value=4.3e-05 Score=78.68 Aligned_cols=72 Identities=21% Similarity=0.229 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCcc---EE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKAD---IM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~D---iI 418 (626)
++.+|||+|||+|.++..+++.+ .+|+|+|.++.+...++... .. .. +++++++|+.++..+ .+| +|
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~------~~v~~iE~d~~~~~~l~~~~-~~-~~-~v~v~~~D~~~~~~~-~~d~~~~v 98 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRA------KKVTAIEIDPRLAEILRKLL-SL-YE-RLEVIEGDALKVDLP-DFPKQLKV 98 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC------CcEEEEECCHHHHHHHHHHh-Cc-CC-cEEEEECchhcCChh-HcCCcceE
Confidence 56799999999999997554433 27999999998774444322 11 23 499999999988764 466 89
Q ss_pred Eeccc
Q psy17734 419 VSELL 423 (626)
Q Consensus 419 VSEll 423 (626)
|+++.
T Consensus 99 vsNlP 103 (253)
T TIGR00755 99 VSNLP 103 (253)
T ss_pred EEcCC
Confidence 99875
No 184
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.82 E-value=0.00015 Score=80.97 Aligned_cols=109 Identities=21% Similarity=0.136 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiI 418 (626)
++.+|||++||.|.=+..++. ..+.+..|+|+|.++.-. ...+++.+-|.. ||.+.+.|.+.+. .++.||.|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~---~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~--nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAA---LMNNQGAIVANEYSASRVKVLHANISRCGVS--NVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHH---HcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEeCchhhhhhhchhhcCeE
Confidence 678999999999999865433 333335999999998655 666677777765 7999999998763 35789999
Q ss_pred Eeccccc----cCCCCC-----c-----------HHHHHHHHHhcccCcEEEeccce
Q psy17734 419 VSELLGS----FGDNEL-----S-----------PECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 419 VSEllgs----fg~~El-----~-----------pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
+.+..-| +--+.. . -++|+.+.++|||||+++=+.||
T Consensus 188 LvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 188 LLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred EEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 9765422 221110 1 24677778899999999855444
No 185
>KOG3010|consensus
Probab=97.80 E-value=7.6e-06 Score=82.26 Aligned_cols=110 Identities=20% Similarity=0.241 Sum_probs=66.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEEe-
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMVS- 420 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIVS- 420 (626)
..++|+|||+|.-++ -.+... .+|+|+|.|+.++ ++.+.-...-..-. .+....++.++. .++++|+|++
T Consensus 35 ~~a~DvG~G~Gqa~~---~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~t~-~~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAAR---GIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCHTP-STMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred ceEEEeccCCCcchH---HHHHhh---hhheeecCCHHHHHHhhcCCCcccccCC-ccccccccccccCCCcceeeehhh
Confidence 389999999993332 333333 3999999999777 44433211111112 455555666654 3589999987
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCc-EEEeccceeeEEeccChHh
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDG-ISIPYNYTSYIAPIMSHKL 466 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgG-i~IP~~~t~y~api~s~~l 466 (626)
+-++.| ++ +++...+.|.||++| ++.-=.|+- -.|-+++.
T Consensus 108 qa~HWF-dl---e~fy~~~~rvLRk~Gg~iavW~Y~d--d~v~~pE~ 148 (261)
T KOG3010|consen 108 QAVHWF-DL---ERFYKEAYRVLRKDGGLIAVWNYND--DFVDWPEF 148 (261)
T ss_pred hhHHhh-ch---HHHHHHHHHHcCCCCCEEEEEEccC--CCcCCHHH
Confidence 445444 33 458888999998766 554443332 34445543
No 186
>KOG3420|consensus
Probab=97.79 E-value=1.8e-05 Score=73.71 Aligned_cols=77 Identities=16% Similarity=0.119 Sum_probs=58.6
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCcc
Q psy17734 339 ADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKAD 416 (626)
Q Consensus 339 ~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~D 416 (626)
++.++++++|+|||+|.|+. +....+. ..|.|+|++|.|. .+.++...-+. ++.++++|+.+..+. ..||
T Consensus 45 gdiEgkkl~DLgcgcGmLs~----a~sm~~~-e~vlGfDIdpeALEIf~rNaeEfEv---qidlLqcdildle~~~g~fD 116 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSI----AFSMPKN-ESVLGFDIDPEALEIFTRNAEEFEV---QIDLLQCDILDLELKGGIFD 116 (185)
T ss_pred ccccCcchhhhcCchhhhHH----HhhcCCC-ceEEeeecCHHHHHHHhhchHHhhh---hhheeeeeccchhccCCeEe
Confidence 35688999999999999984 2333343 4999999999887 66666554444 489999999988754 6799
Q ss_pred EEEeccc
Q psy17734 417 IMVSELL 423 (626)
Q Consensus 417 iIVSEll 423 (626)
..|-+..
T Consensus 117 taviNpp 123 (185)
T KOG3420|consen 117 TAVINPP 123 (185)
T ss_pred eEEecCC
Confidence 9888763
No 187
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.78 E-value=8.3e-05 Score=75.09 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHH-c------C---CCCCcEEEEEecccccC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKE-E------Q---WAQSDVTIVSEDMRTWN 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~-n------~---~~~~nV~vi~~D~~~~~ 410 (626)
++.+||+.|||+|.-+.+++.. | .+|+|||.++.|+... +.... . . ....+|+++++|..++.
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~----G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~ 110 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQ----G--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP 110 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHT----T--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG
T ss_pred CCCeEEEeCCCChHHHHHHHHC----C--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC
Confidence 4568999999999987644332 4 5999999999988432 22111 0 0 11124899999999987
Q ss_pred CC--CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 411 AP--EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 411 ~p--~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.. ++||+|.=--.-..+..+.-+...+.+.++|||||.++
T Consensus 111 ~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~l 152 (218)
T PF05724_consen 111 PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGL 152 (218)
T ss_dssp GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEE
T ss_pred hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEE
Confidence 54 47999964221112222222556677788999999943
No 188
>KOG3045|consensus
Probab=97.78 E-value=0.00019 Score=72.97 Aligned_cols=120 Identities=20% Similarity=0.347 Sum_probs=80.3
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhccCCC--------cCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC
Q psy17734 308 TYEVFEKDPIKYIRYQEAVQQALLDRVSPE--------QADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN 379 (626)
Q Consensus 308 tYe~fe~D~~ry~~Y~~AI~~al~d~~~~~--------~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n 379 (626)
...-|-.|+.-.+.|.+.....+..|-.+. ....+..+|.|+|||-+-++. . ...+|+..|.-
T Consensus 138 A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~------~---~~~kV~SfDL~ 208 (325)
T KOG3045|consen 138 AFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS------S---ERHKVHSFDLV 208 (325)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh------c---cccceeeeeee
Confidence 334455566666666555554443321110 011256799999999998852 1 22489999965
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEecc--ccccCCCCCcHHHHHHHHHhcccCcEEEecccee
Q psy17734 380 MSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSEL--LGSFGDNELSPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 380 p~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEl--lgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
+ + |=.|+.+||++++++ +.+||+|.-| || ..+.+++..+.|.||+||. +
T Consensus 209 a--------~--------~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-----tn~~df~kEa~RiLk~gG~-------l 260 (325)
T KOG3045|consen 209 A--------V--------NERVIACDMRNVPLEDESVDVAVFCLSLMG-----TNLADFIKEANRILKPGGL-------L 260 (325)
T ss_pred c--------C--------CCceeeccccCCcCccCcccEEEeeHhhhc-----ccHHHHHHHHHHHhccCce-------E
Confidence 3 1 345788999999876 7899988743 43 3457789999999999997 5
Q ss_pred eEEeccCh
Q psy17734 457 YIAPIMSH 464 (626)
Q Consensus 457 y~api~s~ 464 (626)
|+|-|.|.
T Consensus 261 ~IAEv~SR 268 (325)
T KOG3045|consen 261 YIAEVKSR 268 (325)
T ss_pred EEEehhhh
Confidence 78888775
No 189
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.77 E-value=0.00027 Score=69.54 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=71.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEeccc
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELL 423 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEll 423 (626)
+++|+|+|-|.=+.-++-+.. +.+|+-||.+..=. .....+..-++. ||+++++++++....++||+|+|--+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p----~~~~~LvEs~~KK~~FL~~~~~~L~L~--nv~v~~~R~E~~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP----DLQVTLVESVGKKVAFLKEVVRELGLS--NVEVINGRAEEPEYRESFDVVTARAV 124 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T----TSEEEEEESSHHHHHHHHHHHHHHT-S--SEEEEES-HHHTTTTT-EEEEEEESS
T ss_pred eEEecCCCCCChhHHHHHhCC----CCcEEEEeCCchHHHHHHHHHHHhCCC--CEEEEEeeecccccCCCccEEEeehh
Confidence 799999999988764333332 26999999998655 334444556776 79999999999555689999999655
Q ss_pred cccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 424 GSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 424 gsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
+ .++.++.-+..+|++||.++...+.
T Consensus 125 ~------~l~~l~~~~~~~l~~~G~~l~~KG~ 150 (184)
T PF02527_consen 125 A------PLDKLLELARPLLKPGGRLLAYKGP 150 (184)
T ss_dssp S------SHHHHHHHHGGGEEEEEEEEEEESS
T ss_pred c------CHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3 2466777788899999998866553
No 190
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.71 E-value=0.00026 Score=66.44 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=70.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcC--CCCCcEEEEEecccccCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQ--WAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~--~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
+...|+|+|||.|-|++.++..........+|+|||.++... .+.+..+.-+ +... ++...+++.+.......+++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKR-LSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhcc-chhhccchhhhcccCCCeEE
Confidence 567899999999999986554222112336999999998665 4443333333 5444 88888877766555678888
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcE-EEeccc
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGI-SIPYNY 454 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi-~IP~~~ 454 (626)
|+ |.. ++.+++.+|+.+.+ -.-.++ ++|+-|
T Consensus 104 vg--LHa--CG~Ls~~~l~~~~~-~~~~~l~~vpCCy 135 (141)
T PF13679_consen 104 VG--LHA--CGDLSDRALRLFIR-PNARFLVLVPCCY 135 (141)
T ss_pred EE--eec--ccchHHHHHHHHHH-cCCCEEEEcCCcc
Confidence 87 443 44577888877655 222333 567755
No 191
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.69 E-value=0.00014 Score=73.90 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEE-EEEecccccCCC-CCccEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVT-IVSEDMRTWNAP-EKADIM 418 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~-vi~~D~~~~~~p-~k~DiI 418 (626)
.++++|||+|||||.++..+++.+ + .+|+|||.+++++.. +. ..+ .+ |. +-..+++..... -..|++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g----a-~~v~avD~~~~~l~~-~l-~~~---~~-v~~~~~~ni~~~~~~~~~~d~~ 142 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG----A-KEVYGVDVGYNQLAE-KL-RQD---ER-VKVLERTNIRYVTPADIFPDFA 142 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC----C-CEEEEEeCCHHHHHH-HH-hcC---CC-eeEeecCCcccCCHhHcCCCce
Confidence 367899999999999997665543 2 499999999965533 11 111 12 32 333455533211 012333
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+++. +|... -.++..+.+.|+| |.+|
T Consensus 143 ~~Dv--sfiS~---~~~l~~i~~~l~~-~~~~ 168 (228)
T TIGR00478 143 TFDV--SFISL---ISILPELDLLLNP-NDLT 168 (228)
T ss_pred eeeE--EEeeh---HhHHHHHHHHhCc-CeEE
Confidence 3332 12111 2257777888888 7655
No 192
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.69 E-value=0.0001 Score=78.83 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH---------cCCCCCcEEEEEecccccC-
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE---------EQWAQSDVTIVSEDMRTWN- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~---------n~~~~~nV~vi~~D~~~~~- 410 (626)
++.+|||+|||.|.-......+ +. .+++|+|++..++ .|++..+. ....- ...++.+|...-.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~----~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f-~a~f~~~D~f~~~l 135 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA----KI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDF-IAEFIAADCFSESL 135 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT----T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECC-EEEEEESTTCCSHH
T ss_pred CCCeEEEecCCCchhHHHHHhc----CC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccc-hhheeccccccchh
Confidence 5689999999999865433333 22 4999999998776 44443311 01112 2677888875421
Q ss_pred ----CC--CCccEEEecc-ccccCCCCCc-HHHHHHHHHhcccCcEEE
Q psy17734 411 ----AP--EKADIMVSEL-LGSFGDNELS-PECLYAAQKYLKEDGISI 450 (626)
Q Consensus 411 ----~p--~k~DiIVSEl-lgsfg~~El~-pe~L~~~~r~LkpgGi~I 450 (626)
.+ .+||+|-+-. |++....|.. ..+|..+...|+|||++|
T Consensus 136 ~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 136 REKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp HCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEE
T ss_pred hhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 22 4899997755 5555555554 458899999999999976
No 193
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.69 E-value=0.00024 Score=72.07 Aligned_cols=101 Identities=22% Similarity=0.305 Sum_probs=73.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CC-CCccEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---AP-EKADIM 418 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p-~k~DiI 418 (626)
.++|+||||.|-+.. ..|++ ..+.-++|||+....+ .+++.+.+.++. ||.++++|+.++- .+ +.+|-|
T Consensus 50 pi~lEIGfG~G~~l~---~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~--Nlri~~~DA~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLV---EMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLK--NLRLLCGDAVEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHH---HHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCC--cEEEEcCCHHHHHHhcCCCCCeeEE
Confidence 589999999999874 33332 3447999999987655 777888888875 7999999998763 23 367777
Q ss_pred EeccccccCCC-----CC-cHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDN-----EL-SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~-----El-~pe~L~~~~r~LkpgGi~I 450 (626)
.-...+-+--. .+ .+++++...+.|||||.+-
T Consensus 124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH 161 (227)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence 65333322211 22 4889999999999999865
No 194
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.67 E-value=0.00034 Score=71.61 Aligned_cols=90 Identities=24% Similarity=0.306 Sum_probs=61.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIVS 420 (626)
+..++||||||.|-.+.. .+... .+|+|.|.|+.|...++. .| .+++..| +|. .+.+||+|.+
T Consensus 94 ~~~~lLDlGAGdG~VT~~---l~~~f---~~v~aTE~S~~Mr~rL~~---kg-----~~vl~~~--~w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTER---LAPLF---KEVYATEASPPMRWRLSK---KG-----FTVLDID--DWQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHH---HHhhc---ceEEeecCCHHHHHHHHh---CC-----CeEEehh--hhhccCCceEEEee
Confidence 457899999999999854 33333 289999999988655543 23 4454333 354 2468999977
Q ss_pred -ccccccCCCCCcH-HHHHHHHHhcccCcEEEe
Q psy17734 421 -ELLGSFGDNELSP-ECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 -Ellgsfg~~El~p-e~L~~~~r~LkpgGi~IP 451 (626)
++++- -..| .+|..+.+.|+|+|++|-
T Consensus 158 LNvLDR----c~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 158 LNVLDR----CDRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred hhhhhc----cCCHHHHHHHHHHHhCCCCEEEE
Confidence 44432 2233 578899999999998763
No 195
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00013 Score=80.60 Aligned_cols=95 Identities=22% Similarity=0.217 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC----CCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP----EKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p----~k~D 416 (626)
++.+|+|+-||.|.+++. .|++. .+|+|||.++.++ .|.++++.|+.. |++++.+|.+++... .++|
T Consensus 293 ~~~~vlDlYCGvG~f~l~---lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i~--N~~f~~~~ae~~~~~~~~~~~~d 364 (432)
T COG2265 293 GGERVLDLYCGVGTFGLP---LAKRV---KKVHGVEISPEAVEAAQENAAANGID--NVEFIAGDAEEFTPAWWEGYKPD 364 (432)
T ss_pred CCCEEEEeccCCChhhhh---hcccC---CEEEEEecCHHHHHHHHHHHHHcCCC--cEEEEeCCHHHHhhhccccCCCC
Confidence 567999999999999964 33322 4999999999988 778888889987 699999999987542 5889
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEE
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGIS 449 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~ 449 (626)
.||-++.....+ +++++.+.+ ++|..++
T Consensus 365 ~VvvDPPR~G~~----~~~lk~l~~-~~p~~Iv 392 (432)
T COG2265 365 VVVVDPPRAGAD----REVLKQLAK-LKPKRIV 392 (432)
T ss_pred EEEECCCCCCCC----HHHHHHHHh-cCCCcEE
Confidence 999999865433 356666654 3455543
No 196
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.63 E-value=0.00018 Score=68.74 Aligned_cols=104 Identities=20% Similarity=0.208 Sum_probs=76.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC------CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA------PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~------p~k~ 415 (626)
.+.-||++|.|||.++.+.+..+- ++..++++|-|+.-+..+... . + .+.+|+||..++.. ...|
T Consensus 48 sglpVlElGPGTGV~TkaIL~~gv---~~~~L~~iE~~~dF~~~L~~~----~-p-~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 48 SGLPVLELGPGTGVITKAILSRGV---RPESLTAIEYSPDFVCHLNQL----Y-P-GVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred cCCeeEEEcCCccHhHHHHHhcCC---CccceEEEEeCHHHHHHHHHh----C-C-CccccccchhhHHHHHhhcCCCee
Confidence 466899999999999987665443 345999999999877655443 1 2 38899999988862 2579
Q ss_pred cEEEeccc-cccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 416 DIMVSELL-GSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 416 DiIVSEll-gsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
|.|||-+. -+|-. ...-++|+.....|..||.++--.|+
T Consensus 119 D~viS~lPll~~P~-~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 119 DSVISGLPLLNFPM-HRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeEEeccccccCcH-HHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 99999663 22211 11346888888889999999877776
No 197
>PRK04148 hypothetical protein; Provisional
Probab=97.62 E-value=0.00053 Score=63.84 Aligned_cols=65 Identities=20% Similarity=0.158 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCch-HHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC--CCccEE
Q psy17734 342 VVTTIMVVGAGRGP-LVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP--EKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~-Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--~k~DiI 418 (626)
++.+|+|||||+|. ++..+. +.| ..|+|+|.|+.++...+. + .++++.+|+.+-.+. +.+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~----~~G--~~ViaIDi~~~aV~~a~~---~-----~~~~v~dDlf~p~~~~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK----ESG--FDVIVIDINEKAVEKAKK---L-----GLNAFVDDLFNPNLEIYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH----HCC--CEEEEEECCHHHHHHHHH---h-----CCeEEECcCCCCCHHHHhcCCEE
Confidence 45789999999997 664322 345 599999999987633322 1 288999999876543 789999
Q ss_pred Ee
Q psy17734 419 VS 420 (626)
Q Consensus 419 VS 420 (626)
.|
T Consensus 82 ys 83 (134)
T PRK04148 82 YS 83 (134)
T ss_pred EE
Confidence 88
No 198
>KOG2899|consensus
Probab=97.58 E-value=0.00032 Score=70.73 Aligned_cols=106 Identities=17% Similarity=0.183 Sum_probs=68.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc--------------------------
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE-------------------------- 392 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n-------------------------- 392 (626)
.++++-+|||||-.|.++ +..++..|+ ..|.|||+++..+ .|++.+...
T Consensus 56 ~f~~~~~LDIGCNsG~lt---~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~ 131 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLT---LSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRN 131 (288)
T ss_pred ccCcceeEeccCCcchhH---HHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccc
Confidence 356788999999999999 466777787 4899999999776 666654210
Q ss_pred -------------CCCCC-cEEEEEecccccCCCCCccEEEe----ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 393 -------------QWAQS-DVTIVSEDMRTWNAPEKADIMVS----ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 393 -------------~~~~~-nV~vi~~D~~~~~~p~k~DiIVS----Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.|-.+ |..+-..|+-+. ...+||+|++ -|+.---..|++-.++..+.++|.|||++|
T Consensus 132 ~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 132 EADRAFTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred cccccccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 00000 111112223211 2258999866 333211123557789999999999999977
No 199
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.56 E-value=0.0018 Score=67.48 Aligned_cols=127 Identities=17% Similarity=0.217 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH-HcCCCC
Q psy17734 319 YIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK-EEQWAQ 396 (626)
Q Consensus 319 y~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~-~n~~~~ 396 (626)
|..|.+.+..-+...... ......+|+=||+|.=||+.. ..+++.+....|.++|.++.|. .+++.++ ..+++.
T Consensus 99 y~nY~~L~~lE~~~l~~~--~~~~p~rVaFIGSGPLPlT~i--~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~ 174 (276)
T PF03059_consen 99 YPNYEKLVRLEYAALRIH--AGDPPSRVAFIGSGPLPLTSI--VLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSK 174 (276)
T ss_dssp HHHHHHHHHHHHH-HTT----TT---EEEEE---SS-HHHH--HHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-S
T ss_pred HHHHHHHHHHHHHHHhhc--CCcccceEEEEcCCCcchHHH--HHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccC
Confidence 456666665544321100 011235899999998888764 3344344335899999999988 6666666 467888
Q ss_pred CcEEEEEecccccCCC-CCccEEE-eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 397 SDVTIVSEDMRTWNAP-EKADIMV-SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 397 ~nV~vi~~D~~~~~~p-~k~DiIV-SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+ ++++.+|..+.... ..+|+|+ +-+.| .+.|.-.++++.+.+.++||+.++-.
T Consensus 175 ~-m~f~~~d~~~~~~dl~~~DvV~lAalVg--~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 175 R-MSFITADVLDVTYDLKEYDVVFLAALVG--MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp S-EEEEES-GGGG-GG----SEEEE-TT-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred C-eEEEecchhccccccccCCEEEEhhhcc--cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 7 99999999877543 5899874 44443 23344577999999999999988865
No 200
>KOG1661|consensus
Probab=97.54 E-value=0.00054 Score=67.84 Aligned_cols=101 Identities=22% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH--------cCCCCCcEEEEEecccccCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE--------EQWAQSDVTIVSEDMRTWNAP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~--------n~~~~~nV~vi~~D~~~~~~p 412 (626)
++...||+|.|+|-|+.++.+.....| ..+.+||.-++.+ .+.+++.. ..|...++.++.+|.+....+
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g--~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATG--GNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCC--ccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 678999999999999876554433233 2349999998877 55665532 234433599999999997654
Q ss_pred -CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcE-EEec
Q psy17734 413 -EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGI-SIPY 452 (626)
Q Consensus 413 -~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi-~IP~ 452 (626)
.++|.|-. | -..++..+.....|++||. +||-
T Consensus 160 ~a~YDaIhv---G-----Aaa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 160 QAPYDAIHV---G-----AAASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cCCcceEEE---c-----cCccccHHHHHHhhccCCeEEEee
Confidence 78999965 2 2234455666666777664 5543
No 201
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00029 Score=71.15 Aligned_cols=94 Identities=22% Similarity=0.297 Sum_probs=68.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEE-EecccccCC---CCCc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIV-SEDMRTWNA---PEKA 415 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi-~~D~~~~~~---p~k~ 415 (626)
.++.+|||+|+-||.++..+++.++ .+|||||..-+.. .-++. +.+ |.++ ..++|.+.. .+++
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA-----k~VyavDVG~~Ql~~kLR~------d~r-V~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA-----KHVYAVDVGYGQLHWKLRN------DPR-VIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC-----cEEEEEEccCCccCHhHhc------CCc-EEEEecCChhhCCHHHcccCC
Confidence 4789999999999999988777654 4999999986544 22221 234 5554 467777764 3689
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|+++++. || ..+..+|-.+...++|+|.+++
T Consensus 146 d~~v~Dv--SF---ISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 146 DLIVIDV--SF---ISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CeEEEEe--eh---hhHHHHHHHHHHhcCCCceEEE
Confidence 9999987 44 2345678888889999987663
No 202
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.52 E-value=0.00053 Score=80.64 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhc--------------------------------------CCccEEEEEeCCHHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEA--------------------------------------NRKVRVYAVEKNMSAV 383 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~--------------------------------------g~~~~V~AVE~np~a~ 383 (626)
++..++|-+||+|.+...++..+... ....+|+|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 35789999999999997776643310 0113799999999887
Q ss_pred -HHHHHHHHcCCCCCcEEEEEecccccCCC---CCccEEEeccc
Q psy17734 384 -VGLKYKKEEQWAQSDVTIVSEDMRTWNAP---EKADIMVSELL 423 (626)
Q Consensus 384 -~a~~~~~~n~~~~~nV~vi~~D~~~~~~p---~k~DiIVSEll 423 (626)
.+++++..+++.+. |+++++|+.++..+ +++|+||+++.
T Consensus 270 ~~A~~N~~~~g~~~~-i~~~~~D~~~~~~~~~~~~~d~IvtNPP 312 (702)
T PRK11783 270 QAARKNARRAGVAEL-ITFEVKDVADLKNPLPKGPTGLVISNPP 312 (702)
T ss_pred HHHHHHHHHcCCCcc-eEEEeCChhhcccccccCCCCEEEECCC
Confidence 88999999999887 99999999998654 36999999985
No 203
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.52 E-value=0.00021 Score=74.01 Aligned_cols=73 Identities=25% Similarity=0.362 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCC----CccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPE----KADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~----k~Di 417 (626)
++..|+|+|+|+|.++..++..+ .+|++||+++.....++.... -.. |++++++|..++..+. +...
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~------~~v~~vE~d~~~~~~L~~~~~--~~~-~~~vi~~D~l~~~~~~~~~~~~~~ 100 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG------KRVIAVEIDPDLAKHLKERFA--SNP-NVEVINGDFLKWDLYDLLKNQPLL 100 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS------SEEEEEESSHHHHHHHHHHCT--TCS-SEEEEES-TTTSCGGGHCSSSEEE
T ss_pred CCCEEEEeCCCCccchhhHhccc------CcceeecCcHhHHHHHHHHhh--hcc-cceeeecchhccccHHhhcCCceE
Confidence 56899999999999998766554 399999999987755554322 123 5999999999998765 6778
Q ss_pred EEeccc
Q psy17734 418 MVSELL 423 (626)
Q Consensus 418 IVSEll 423 (626)
||+++.
T Consensus 101 vv~NlP 106 (262)
T PF00398_consen 101 VVGNLP 106 (262)
T ss_dssp EEEEET
T ss_pred EEEEec
Confidence 999875
No 204
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.51 E-value=0.00057 Score=72.41 Aligned_cols=117 Identities=20% Similarity=0.325 Sum_probs=85.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHH-----HHHHHcCCCCCcEEEEEecccccC--CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGL-----KYKKEEQWAQSDVTIVSEDMRTWN--APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~-----~~~~~n~~~~~nV~vi~~D~~~~~--~p~ 413 (626)
+-..||.+|.|.|.-.+.++ +..+. .+|+-||.+|.++ .+. +..+.+.+.|..|+++..|..+|- ..+
T Consensus 289 ~a~~vLvlGGGDGLAlRell---kyP~~-~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~ 364 (508)
T COG4262 289 GARSVLVLGGGDGLALRELL---KYPQV-EQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAAD 364 (508)
T ss_pred ccceEEEEcCCchHHHHHHH---hCCCc-ceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcc
Confidence 34579999999998765433 33333 4999999999776 333 344556677767999999999984 337
Q ss_pred CccEEEecccccc--CCCCC-cHHHHHHHHHhcccCcEEEeccceeeEEecc
Q psy17734 414 KADIMVSELLGSF--GDNEL-SPECLYAAQKYLKEDGISIPYNYTSYIAPIM 462 (626)
Q Consensus 414 k~DiIVSEllgsf--g~~El-~pe~L~~~~r~LkpgGi~IP~~~t~y~api~ 462 (626)
+||.+|-++.+-- ....+ +.|+..-+.+.|+++|+|+-|+.+-|-.|=.
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~v 416 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRV 416 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCce
Confidence 9999999886532 11222 4567777788999999999999988887743
No 205
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.49 E-value=3.4e-05 Score=75.08 Aligned_cols=95 Identities=22% Similarity=0.231 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------- 411 (626)
++.+|||+||++|.++..+++.. +...+|+|||..+.. ... ++..+.+|+.+...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~---~~~~~v~avDl~~~~----------~~~--~~~~i~~d~~~~~~~~~i~~~~~~ 87 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG---GPAGRVVAVDLGPMD----------PLQ--NVSFIQGDITNPENIKDIRKLLPE 87 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST---TTEEEEEEEESSSTG----------S-T--TEEBTTGGGEEEEHSHHGGGSHGT
T ss_pred cccEEEEcCCcccceeeeeeecc---cccceEEEEeccccc----------ccc--ceeeeecccchhhHHHhhhhhccc
Confidence 45899999999999997555443 223699999999751 111 47777777654321
Q ss_pred -CCCccEEEeccccccCCCCC-----cH----HHHHHHHHhcccCcEEEe
Q psy17734 412 -PEKADIMVSELLGSFGDNEL-----SP----ECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 412 -p~k~DiIVSEllgsfg~~El-----~p----e~L~~~~r~LkpgGi~IP 451 (626)
.+++|+|+|+.......... +. ..+.-+.++|||||.+|-
T Consensus 88 ~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~ 137 (181)
T PF01728_consen 88 SGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVI 137 (181)
T ss_dssp TTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred cccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEE
Confidence 15899999987332222111 11 123344577999998663
No 206
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00088 Score=66.62 Aligned_cols=111 Identities=15% Similarity=0.137 Sum_probs=72.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---------C
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---------P 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------p 412 (626)
++.+|+|+||-.|.++..+. +..+.+.+|+|||..|+.. .. +|.++++|+++-+. .
T Consensus 45 ~~~~ViDLGAAPGgWsQva~---~~~~~~~~ivavDi~p~~~----------~~--~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAA---KKLGAGGKIVAVDILPMKP----------IP--GVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHH---HHhCCCCcEEEEECccccc----------CC--CceEEeeeccCccHHHHHHHHcCC
Confidence 67899999999999997544 4445445799999998432 11 59999999987542 1
Q ss_pred CCccEEEeccccccCCCCCcHH---------HHHHHHHhcccCcEEEeccceeeEEeccChHhHHHHh
Q psy17734 413 EKADIMVSELLGSFGDNELSPE---------CLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVK 471 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe---------~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~~~ 471 (626)
.++|+|+|+..-....+....+ .++-+..+|+|||.++-- ..+.=...++...++
T Consensus 110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K----~fqg~~~~~~l~~~~ 173 (205)
T COG0293 110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK----VFQGEDFEDLLKALR 173 (205)
T ss_pred CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE----EEeCCCHHHHHHHHH
Confidence 4589999988654433333221 233455789999987632 233334444544444
No 207
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.41 E-value=0.00026 Score=68.17 Aligned_cols=72 Identities=13% Similarity=0.039 Sum_probs=49.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCC----CccEEE
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPE----KADIMV 419 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~----k~DiIV 419 (626)
+|+|+.||.|..+...++.. .+|+|||++|..+ .++.+.+-.|..++ |+++++|..++.... .+|+|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~------~~Viaidid~~~~~~a~hNa~vYGv~~~-I~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF------DRVIAIDIDPERLECAKHNAEVYGVADN-IDFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-------EEEEEES-HHHHHHHHHHHHHTT-GGG-EEEEES-HHHHGGGB------SEEE
T ss_pred EEEEeccCcCHHHHHHHHhC------CeEEEEECCHHHHHHHHHHHHHcCCCCc-EEEEeCCHHHHHhhccccccccEEE
Confidence 79999999999986444332 3999999999766 77777777787776 999999998864322 289998
Q ss_pred eccc
Q psy17734 420 SELL 423 (626)
Q Consensus 420 SEll 423 (626)
..+.
T Consensus 75 lSPP 78 (163)
T PF09445_consen 75 LSPP 78 (163)
T ss_dssp E---
T ss_pred ECCC
Confidence 7663
No 208
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.41 E-value=0.00088 Score=75.88 Aligned_cols=103 Identities=20% Similarity=0.218 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---APEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p~k~Di 417 (626)
...++||||||.|-+.. ..|+ ...+..++|||+....+ .+.+.....++. |+.++.+|++.+. .+..+|-
T Consensus 347 ~~p~~lEIG~G~G~~~~---~~A~-~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~--N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFI---NQAK-MNPDALFIGVEVYLNGVANVLKLAGEQNIT--NFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCceEEEECCCchHHHH---HHHH-hCCCCCEEEEEeeHHHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHhcCcccccE
Confidence 46789999999999874 3333 23346999999997654 666666667776 7999999987543 2367888
Q ss_pred EEeccccccCCC-----CC-cHHHHHHHHHhcccCcEEE
Q psy17734 418 MVSELLGSFGDN-----EL-SPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 418 IVSEllgsfg~~-----El-~pe~L~~~~r~LkpgGi~I 450 (626)
|.-...+-+--. .+ .+++++...+.|||||.+-
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~ 459 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV 459 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence 877544433221 12 3889999999999999865
No 209
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.37 E-value=0.00068 Score=73.33 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=54.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC------------
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA------------ 411 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~------------ 411 (626)
.|||+-||.|.+++. .|+.+ .+|+|||.++.|+ .|+++...|+.. |++++.++++++..
T Consensus 199 ~vlDlycG~G~fsl~---la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~--n~~f~~~~~~~~~~~~~~~r~~~~~~ 270 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLP---LAKKA---KKVIGVEIVEEAVEDARENAKLNGID--NVEFIRGDAEDFAKALAKAREFNRLK 270 (352)
T ss_dssp EEEEES-TTTCCHHH---HHCCS---SEEEEEES-HHHHHHHHHHHHHTT----SEEEEE--SHHCCCHHCCS-GGTTGG
T ss_pred cEEEEeecCCHHHHH---HHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCC--cceEEEeeccchhHHHHhhHHHHhhh
Confidence 799999999999964 33322 3999999999988 788898899987 79999988766421
Q ss_pred -----CCCccEEEeccccccCCCCCcHHHHHHHH
Q psy17734 412 -----PEKADIMVSELLGSFGDNELSPECLYAAQ 440 (626)
Q Consensus 412 -----p~k~DiIVSEllgsfg~~El~pe~L~~~~ 440 (626)
..++|+||-++.-..++ +.+++.+.
T Consensus 271 ~~~~~~~~~d~vilDPPR~G~~----~~~~~~~~ 300 (352)
T PF05958_consen 271 GIDLKSFKFDAVILDPPRAGLD----EKVIELIK 300 (352)
T ss_dssp GS-GGCTTESEEEE---TT-SC----HHHHHHHH
T ss_pred hhhhhhcCCCEEEEcCCCCCch----HHHHHHHh
Confidence 12689999988754432 45666553
No 210
>KOG2940|consensus
Probab=97.35 E-value=0.00025 Score=70.84 Aligned_cols=121 Identities=16% Similarity=0.200 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcE
Q psy17734 320 IRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDV 399 (626)
Q Consensus 320 ~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV 399 (626)
+...++|...+.|++.+-.+ .-..++|+|||.|.+...+.. + |. .+++-+|.+-.++...+....++. .+
T Consensus 52 dylkeeig~rlaDrvfD~kk--~fp~a~diGcs~G~v~rhl~~--e--~v-ekli~~DtS~~M~~s~~~~qdp~i---~~ 121 (325)
T KOG2940|consen 52 DYLKEEIGDRLADRVFDCKK--SFPTAFDIGCSLGAVKRHLRG--E--GV-EKLIMMDTSYDMIKSCRDAQDPSI---ET 121 (325)
T ss_pred hHHHHHHHHHHHHHHHHHhh--hCcceeecccchhhhhHHHHh--c--ch-hheeeeecchHHHHHhhccCCCce---EE
Confidence 44456666666665533222 234699999999999864322 2 22 389999999766644333333443 25
Q ss_pred EEEEecccccCCC-CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 400 TIVSEDMRTWNAP-EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 400 ~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
....+|-+.++.. ..+|+|+|.+--++. | ..|-++..+...|||+|.+|-.
T Consensus 122 ~~~v~DEE~Ldf~ens~DLiisSlslHW~-N-dLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 122 SYFVGDEEFLDFKENSVDLIISSLSLHWT-N-DLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred EEEecchhcccccccchhhhhhhhhhhhh-c-cCchHHHHHHHhcCCCccchhH
Confidence 5667787777764 689999996633332 2 3588888888899999998743
No 211
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.32 E-value=0.00087 Score=67.05 Aligned_cols=102 Identities=16% Similarity=0.040 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHH-------HHcCCCCCcEEEEEecccccCCC-
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYK-------KEEQWAQSDVTIVSEDMRTWNAP- 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~-------~~n~~~~~nV~vi~~D~~~~~~p- 412 (626)
++.+.+|+|||.|-.+. .|+...++ .+++|||+.+... .+.... +..+.....|+++++|+.+.+..
T Consensus 42 ~~dvF~DlGSG~G~~v~---~aal~~~~-~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~ 117 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVF---QAALQTGC-KKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVK 117 (205)
T ss_dssp TT-EEEEES-TTSHHHH---HHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHH
T ss_pred CCCEEEECCCCCCHHHH---HHHHHcCC-cEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHh
Confidence 56799999999999984 44444565 3799999998654 332211 11222222489999998764321
Q ss_pred ---CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 413 ---EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 413 ---~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..+|+|+.+-. ...+.+-.-|.....-||+|..+|
T Consensus 118 ~~~s~AdvVf~Nn~---~F~~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 118 DIWSDADVVFVNNT---CFDPDLNLALAELLLELKPGARII 155 (205)
T ss_dssp HHGHC-SEEEE--T---TT-HHHHHHHHHHHTTS-TT-EEE
T ss_pred hhhcCCCEEEEecc---ccCHHHHHHHHHHHhcCCCCCEEE
Confidence 46899987432 111111222333334578888887
No 212
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.29 E-value=0.0009 Score=65.64 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=56.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
.-.+++|||+|+|+|.-+..++++++ ..|++.|..|... .+.-+.+.|+. +|.++..|.-. .+..+|++
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA-----~~v~a~d~~P~~~~ai~lNa~angv---~i~~~~~d~~g--~~~~~Dl~ 146 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGA-----AEVVAADIDPWLEQAIRLNAAANGV---SILFTHADLIG--SPPAFDLL 146 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhh-----HHHHhcCCChHHHHHhhcchhhccc---eeEEeeccccC--CCcceeEE
Confidence 34678999999999999977666665 4999999999877 44456667876 49999998877 45789998
Q ss_pred Ee
Q psy17734 419 VS 420 (626)
Q Consensus 419 VS 420 (626)
+.
T Consensus 147 La 148 (218)
T COG3897 147 LA 148 (218)
T ss_pred Ee
Confidence 65
No 213
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.26 E-value=0.0024 Score=64.12 Aligned_cols=101 Identities=20% Similarity=0.245 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC----CCCCcc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN----APEKAD 416 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~----~p~k~D 416 (626)
.++.+||-+|+.+|.-+....... |.+..|||||.+|....-+-.+.+.. . ||--|-+|++.-. +-+++|
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIv---g~~G~VYaVEfs~r~~rdL~~la~~R-~--NIiPIl~DAr~P~~Y~~lv~~VD 145 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIV---GPDGVVYAVEFSPRSMRDLLNLAKKR-P--NIIPILEDARHPEKYRMLVEMVD 145 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHH---TTTSEEEEEESSHHHHHHHHHHHHHS-T--TEEEEES-TTSGGGGTTTS--EE
T ss_pred CCCCEEEEecccCCCccchhhhcc---CCCCcEEEEEecchhHHHHHHHhccC-C--ceeeeeccCCChHHhhccccccc
Confidence 367899999999998876544444 33459999999996542222222221 1 6888889998643 226899
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|+++..- .+...-+...++.+||+||.++-
T Consensus 146 vI~~DVaQ----p~Qa~I~~~Na~~fLk~gG~~~i 176 (229)
T PF01269_consen 146 VIFQDVAQ----PDQARIAALNARHFLKPGGHLII 176 (229)
T ss_dssp EEEEE-SS----TTHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEecCCC----hHHHHHHHHHHHhhccCCcEEEE
Confidence 99997632 22233456778889999998663
No 214
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.24 E-value=0.0012 Score=66.42 Aligned_cols=96 Identities=22% Similarity=0.186 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcCCCCCcEEEEEecccccCCCCC-ccEEEe
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVSEDMRTWNAPEK-ADIMVS 420 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~~~~~nV~vi~~D~~~~~~p~k-~DiIVS 420 (626)
.++++|||+|-|.=+.-++-+. .+.+|+-+|.+..-+..+ +....-++. ||+++++.++++....+ ||+|+|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~----p~~~vtLles~~Kk~~FL~~~~~eL~L~--nv~i~~~RaE~~~~~~~~~D~vts 141 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF----PDLKVTLLESLGKKIAFLREVKKELGLE--NVEIVHGRAEEFGQEKKQYDVVTS 141 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc----cCCcEEEEccCchHHHHHHHHHHHhCCC--CeEEehhhHhhcccccccCcEEEe
Confidence 5799999999997775433222 225899999987655444 444456665 79999999999986445 999999
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
--+.+ +..+.+-+..++|+||.++
T Consensus 142 RAva~------L~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 142 RAVAS------LNVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ehccc------hHHHHHHHHHhcccCCcch
Confidence 65432 3556677788999988765
No 215
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.23 E-value=0.00081 Score=62.39 Aligned_cols=60 Identities=18% Similarity=0.134 Sum_probs=45.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN 410 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~ 410 (626)
+|+|+|||.|.++..+++.+ .+.+|+++|.+|.+. .++++...|++. +|++++..+.+-.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~----~~~~v~~~E~~~~~~~~l~~~~~~n~~~--~v~~~~~al~~~~ 61 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG----AEGRVIAFEPLPDAYEILEENVKLNNLP--NVVLLNAAVGDRD 61 (143)
T ss_pred CEEEccCCccHHHHHHHHhC----CCCEEEEEecCHHHHHHHHHHHHHcCCC--cEEEEEeeeeCCC
Confidence 48999999999986544433 224899999999877 566666778775 4999988776533
No 216
>KOG1663|consensus
Probab=97.21 E-value=0.002 Score=64.81 Aligned_cols=113 Identities=18% Similarity=0.097 Sum_probs=82.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-------APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-------~p~ 413 (626)
..+++||||.=||-=+...+.+.... .+|+|+|.|+.++ .+.+..+..|..++ |++++++.-+.- ...
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~d---Grv~a~eid~~~~~~~~~~~k~agv~~K-I~~i~g~a~esLd~l~~~~~~~ 148 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPED---GRVVAIEIDADAYEIGLELVKLAGVDHK-ITFIEGPALESLDELLADGESG 148 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCC---ceEEEEecChHHHHHhHHHHHhccccce-eeeeecchhhhHHHHHhcCCCC
Confidence 45789999988886655445555443 4999999999776 88888888999999 999999876531 136
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccCh
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSH 464 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~ 464 (626)
.||.++-+ .+-++ --..++..-+++|+||+++-+..-... ++..|
T Consensus 149 tfDfaFvD---adK~n--Y~~y~e~~l~Llr~GGvi~~DNvl~~G-~v~~p 193 (237)
T KOG1663|consen 149 TFDFAFVD---ADKDN--YSNYYERLLRLLRVGGVIVVDNVLWPG-VVADP 193 (237)
T ss_pred ceeEEEEc---cchHH--HHHHHHHHHhhcccccEEEEeccccCC-cccCc
Confidence 79998652 11111 124566677899999999988877777 66665
No 217
>KOG1975|consensus
Probab=97.20 E-value=0.001 Score=69.62 Aligned_cols=103 Identities=16% Similarity=0.179 Sum_probs=64.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH----H-cCCCCCcEEEEEecccccC-----
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK----E-EQWAQSDVTIVSEDMRTWN----- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~----~-n~~~~~nV~vi~~D~~~~~----- 410 (626)
++..++|+|||-|.-....-.|+ . .+++++|+.+..+ .+++.-+ . ..+.-. +.++.+|.....
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAg----I-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~-a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAG----I-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFT-AVFIAADCFKERLMDLL 190 (389)
T ss_pred cccccceeccCCcccHhHhhhhc----c-cceEeeehhhccHHHHHHHHHHHHhhhhcccce-eEEEEeccchhHHHHhc
Confidence 45679999999987664434443 3 4999999987554 3332211 1 112223 889999986532
Q ss_pred -CCC-CccEEEeccc-cc-cCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 411 -APE-KADIMVSELL-GS-FGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 411 -~p~-k~DiIVSEll-gs-fg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.+. +||||-|-.. ++ |-..|...-.|..+.+.|||||.+|
T Consensus 191 e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred cCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 233 4999977442 22 2222223446788899999999987
No 218
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.19 E-value=0.0011 Score=63.54 Aligned_cols=76 Identities=7% Similarity=-0.107 Sum_probs=53.1
Q ss_pred EEEeCCHHHH-HHHHHHHHcC--CCCCcEEEEEecccccCCC-CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEE
Q psy17734 374 YAVEKNMSAV-VGLKYKKEEQ--WAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGIS 449 (626)
Q Consensus 374 ~AVE~np~a~-~a~~~~~~n~--~~~~nV~vi~~D~~~~~~p-~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~ 449 (626)
+|+|.|+.++ ++++.....+ ... +|+++.+|+++++.+ +.||+|++...-.+. +...+++..+.|.|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~-~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYK-CIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV--VDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCC-ceEEEEechhhCCCCCCCeeEEEecchhhcC--CCHHHHHHHHHHHcCcCeEE
Confidence 4899999877 5554433222 123 499999999999865 589999984321111 22467899999999999998
Q ss_pred Eec
Q psy17734 450 IPY 452 (626)
Q Consensus 450 IP~ 452 (626)
+-.
T Consensus 78 ~i~ 80 (160)
T PLN02232 78 SIL 80 (160)
T ss_pred EEE
Confidence 643
No 219
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=97.16 E-value=0.012 Score=64.64 Aligned_cols=198 Identities=15% Similarity=0.142 Sum_probs=130.0
Q ss_pred cCCCeeEEeecCCCCCCHHHHHHHHHhCCccEEEecCCCcccccccccccccccCCCCccccc----CCCCCcCc---cc
Q psy17734 3 QAKIAVSVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQS----LSSICPQW---LK 75 (626)
Q Consensus 3 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~df~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~---~~ 75 (626)
++++++.+|-.+.....+..++..|.+.|-+-+-+-+.+||-=. ..|+... +...|..+ ..
T Consensus 126 ~~~~~~~iGaHvSiaGG~~~a~~~a~~~g~~afqiF~~npr~w~------------~~~~~~~~~~~f~~~~~~~gi~~~ 193 (413)
T PTZ00372 126 AEKSNVYIGAHVSASGGVDNSPINAYNIAGQAFALFLKNQRTWN------------SPPLSDETIDKFKENCKKYNYDPK 193 (413)
T ss_pred hhccCceEEEEEeccccHHHHHHHHHHcCCCEEEEEcCCCccCC------------CCCCCHHHHHHHHHHHHHcCCCcc
Confidence 35688999999988889999999999999999999888885211 0121111 11111222 12
Q ss_pred eEEEecCCcccccCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEE-cCC-------CCChhhHHHHHHHHhccCCceEEE
Q psy17734 76 LIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVV-SLD-------QPDFCNFARTLYAHSEKNMSYTAW 147 (626)
Q Consensus 76 ~~v~~~s~w~~~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~-~~~-------~~~~~~~ar~~~~~~~~~~~~~~~ 147 (626)
.++.-.|-.| .|.|+|+.+|+.|.+.|++||..|..||++.|++ |.. .....++++.|++.+.....+.
T Consensus 194 ~i~~HapYlI-NLASpd~e~rekSv~~~~~eL~rA~~LGa~~VV~HPGs~~~~~~~ee~i~~i~e~L~~~la~~~gV~-- 270 (413)
T PTZ00372 194 FILPHGSYLI-NLANPDKEKREKSYDAFLDDLQRCEQLGIKLYNFHPGSTVGQCSKEEGIKNIADCINKAHEETKSVI-- 270 (413)
T ss_pred eEEeecCcee-cCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCHHHHHHHHHHHHHHHHhCcCCCE--
Confidence 3555566568 9999999999999999999999999999999999 432 1134567888888764333333
Q ss_pred EEeeccCCCccccccCCCCCCccchHHHHHHHHHhcCCCCceEEEEEec------CCCCCHhHHhHhh-------c-ccc
Q psy17734 148 IKVPIRPVDTSMLRQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEIN------GDICDDHELTRWL-------G-EPL 213 (626)
Q Consensus 148 i~~p~~~~~~~~~~~~~~~~~~~~~w~~W~~~r~~c~~~~~l~v~L~l~------~~~p~~~~~~rW~-------~-EPv 213 (626)
|-|--... ....-..+.+--..|...++..++++|+|+.. .++-+.+-++.|+ | +-|
T Consensus 271 IlLENmag---------~g~~lG~~~eeL~~Iid~v~~~~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL 341 (413)
T PTZ00372 271 IVLENTAG---------QKNSVGSKFEDLRDIIALVEDKSRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYL 341 (413)
T ss_pred EEEecCCC---------CCCcccCCHHHHHHHHHhcCCcCCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhhe
Confidence 33322110 00011135555666666777778999999987 3444433333333 3 668
Q ss_pred eEEEecccccc
Q psy17734 214 RCVFIPTHVFQ 224 (626)
Q Consensus 214 ~~~~i~~~~f~ 224 (626)
+++-++-|-.-
T Consensus 342 ~~vHLNDSk~~ 352 (413)
T PTZ00372 342 KAVHLNDSKSD 352 (413)
T ss_pred eEEEEEcCCCc
Confidence 88888776653
No 220
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.12 E-value=0.00055 Score=68.51 Aligned_cols=104 Identities=15% Similarity=0.096 Sum_probs=65.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
+..+.||.|||-|..+.-++. ... .+|-.||.++.-. .|.+.+. .+-... .++++.-+.+|.++ .++|+|-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl--~~f---~~VDlVEp~~~Fl~~a~~~l~-~~~~~v-~~~~~~gLQ~f~P~~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLL--PVF---DEVDLVEPVEKFLEQAKEYLG-KDNPRV-GEFYCVGLQDFTPEEGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCC--CC----SEEEEEES-HHHHHHHHHHTC-CGGCCE-EEEEES-GGG----TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHH--Hhc---CEeEEeccCHHHHHHHHHHhc-ccCCCc-ceEEecCHhhccCCCCcEeEEE
Confidence 457899999999999853321 111 3999999998766 4443332 222233 78899999999875 6999999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.-|.-..+..+..-++|..+...|+|+|+++--
T Consensus 128 ~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 128 IQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 988644444444567888899999999987643
No 221
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.09 E-value=0.0034 Score=65.24 Aligned_cols=136 Identities=20% Similarity=0.248 Sum_probs=85.5
Q ss_pred HhhCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCc--h--HHHHHHHHHhh-cCCccEEEEEeCCHHHH-H
Q psy17734 311 VFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRG--P--LVTASLNAAKE-ANRKVRVYAVEKNMSAV-V 384 (626)
Q Consensus 311 ~fe~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG--~--Ls~~al~Aa~~-~g~~~~V~AVE~np~a~-~ 384 (626)
.|-.|+...+..++.+...+..... . +..+|+-+||+|| | +++.+.++... .+..++|+|.|++..++ .
T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~----~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~ 144 (268)
T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKK----G-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEK 144 (268)
T ss_pred hhccCcHHHHHHHHHHHHHHHhhcc----C-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHH
Confidence 4778888777777766665543211 1 3579999999999 3 44444444422 12358999999998765 3
Q ss_pred HHHH------H---------HH------cC-C------CCCcEEEEEecccccC-CCCCccEEEe-ccccccCCCCCcHH
Q psy17734 385 GLKY------K---------KE------EQ-W------AQSDVTIVSEDMRTWN-APEKADIMVS-ELLGSFGDNELSPE 434 (626)
Q Consensus 385 a~~~------~---------~~------n~-~------~~~nV~vi~~D~~~~~-~p~k~DiIVS-Ellgsfg~~El~pe 434 (626)
|++- . .+ .+ | .. .|++-..|+-+-. .+.++|+|+| +.|.+| +.+.-.+
T Consensus 145 A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~-~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF-d~~~q~~ 222 (268)
T COG1352 145 ARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRK-MVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF-DEETQER 222 (268)
T ss_pred HhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhc-ccEEeecCCCCCccccCCCCEEEEcceEEee-CHHHHHH
Confidence 3221 1 00 01 1 11 3555555654433 5578999999 666555 4454567
Q ss_pred HHHHHHHhcccCcEEEecc
Q psy17734 435 CLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 435 ~L~~~~r~LkpgGi~IP~~ 453 (626)
++......|+|||.++--.
T Consensus 223 il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 223 ILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred HHHHHHHHhCCCCEEEEcc
Confidence 8888889999999977443
No 222
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.08 E-value=0.00016 Score=63.88 Aligned_cols=102 Identities=17% Similarity=0.154 Sum_probs=41.3
Q ss_pred EEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc--CCC-CCccEEEeccc
Q psy17734 347 MVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW--NAP-EKADIMVSELL 423 (626)
Q Consensus 347 LDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~--~~p-~k~DiIVSEll 423 (626)
|++|+..|.-+...+.+.+..+. .++++||..+....+.+.+++.+..++ +++++++..+. ..+ +++|+++-.--
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~-~~~~~vD~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGR-GKLYSVDPFPGDEQAQEIIKKAGLSDR-VEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp ---------------------------EEEESS------------GGG-BT-EEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred Ccccccccccccccccccccccc-CCEEEEECCCcccccchhhhhcCCCCe-EEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 58998888887776777665442 489999999853233344444566666 99999999875 223 78999976432
Q ss_pred cccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 424 GSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 424 gsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
.. .+.....+..+.+.|+|||+++-+.
T Consensus 79 H~---~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS---YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp -----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC---HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11 1223445666778899999998654
No 223
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.07 E-value=0.0012 Score=69.69 Aligned_cols=74 Identities=20% Similarity=0.179 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CCC---Cc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--APE---KA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~---k~ 415 (626)
++.+++|++||.|..+..++.+. +.+.+|+|+|.++.|+ .+.+.+.. .++ ++++++|..++. .++ ++
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~---~~~g~VigiD~D~~al~~ak~~L~~---~~r-i~~i~~~f~~l~~~l~~~~~~v 91 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERL---GPKGRLIAIDRDPDAIAAAKDRLKP---FGR-FTLVHGNFSNLKEVLAEGLGKV 91 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhC---CCCCEEEEEcCCHHHHHHHHHhhcc---CCc-EEEEeCCHHHHHHHHHcCCCcc
Confidence 45699999999999997665543 2225999999999888 44444322 455 999999999864 222 79
Q ss_pred cEEEecc
Q psy17734 416 DIMVSEL 422 (626)
Q Consensus 416 DiIVSEl 422 (626)
|.|+.++
T Consensus 92 DgIl~DL 98 (296)
T PRK00050 92 DGILLDL 98 (296)
T ss_pred CEEEECC
Confidence 9998865
No 224
>KOG2915|consensus
Probab=97.04 E-value=0.0046 Score=63.55 Aligned_cols=97 Identities=25% Similarity=0.269 Sum_probs=73.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHH-HHHHHHHHHHcCCCCCcEEEEEecccccCC---CCCcc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMS-AVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKAD 416 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~-a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~D 416 (626)
.++.+|++.|+|+|.++.+.++|.+-.| +++..|.... +..+++..+..+|++. |++++.|+..-.. ..++|
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptG---hl~tfefH~~Ra~ka~eeFr~hgi~~~-vt~~hrDVc~~GF~~ks~~aD 179 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTG---HLYTFEFHETRAEKALEEFREHGIGDN-VTVTHRDVCGSGFLIKSLKAD 179 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCc---ceEEEEecHHHHHHHHHHHHHhCCCcc-eEEEEeecccCCccccccccc
Confidence 3789999999999999988777776444 9999999874 5588888888999886 9999999877544 35799
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
.|.-+++-- -+.+-.+.+.||.+|.
T Consensus 180 aVFLDlPaP-------w~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 180 AVFLDLPAP-------WEAIPHAAKILKDEGG 204 (314)
T ss_pred eEEEcCCCh-------hhhhhhhHHHhhhcCc
Confidence 997766432 1233334457887765
No 225
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.04 E-value=0.0019 Score=68.84 Aligned_cols=109 Identities=14% Similarity=0.136 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIV 419 (626)
.++.++||+||++|.++..+++. | .+|+|||..+++.. +.. .. +|+.+.+|...+.. ++++|++|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r----G--~~V~AVD~g~l~~~----L~~---~~-~V~h~~~d~fr~~p~~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR----G--MFVTAVDNGPMAQS----LMD---TG-QVEHLRADGFKFRPPRKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc----C--CEEEEEechhcCHh----hhC---CC-CEEEEeccCcccCCCCCCCCEEE
Confidence 36789999999999999765543 3 39999997764432 111 23 49999999887765 67899999
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHHHHhhh
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSS 473 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~~~~~ 473 (626)
|+.. |.-..+..-+.++|..| .++..++--=+.-.+-|+++..+
T Consensus 276 cDmv------e~P~rva~lm~~Wl~~g----~cr~aIfnLKlpmk~r~~~v~~~ 319 (357)
T PRK11760 276 CDMV------EKPARVAELMAQWLVNG----WCREAIFNLKLPMKKRYEEVRQC 319 (357)
T ss_pred Eecc------cCHHHHHHHHHHHHhcC----cccEEEEEEEcCCCCCHHHHHHH
Confidence 9764 33234556667788665 22333333333334456655543
No 226
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.0018 Score=69.01 Aligned_cols=101 Identities=18% Similarity=0.159 Sum_probs=75.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEe-cccccCCCCC-ccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSE-DMRTWNAPEK-ADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~-D~~~~~~p~k-~DiI 418 (626)
++..|||=-||||.+.. .|+ ..| .+|+|+|.+..++ -++.++...+.. +..++.. |+++++++++ +|.|
T Consensus 197 ~G~~vlDPFcGTGgiLi---Eag-l~G--~~viG~Did~~mv~gak~Nl~~y~i~--~~~~~~~~Da~~lpl~~~~vdaI 268 (347)
T COG1041 197 RGELVLDPFCGTGGILI---EAG-LMG--ARVIGSDIDERMVRGAKINLEYYGIE--DYPVLKVLDATNLPLRDNSVDAI 268 (347)
T ss_pred cCCEeecCcCCccHHHH---hhh-hcC--ceEeecchHHHHHhhhhhhhhhhCcC--ceeEEEecccccCCCCCCccceE
Confidence 67799999999999874 444 356 4999999998665 778888776654 3777776 9999999865 9999
Q ss_pred Eeccc-cccCC------CCCcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELL-GSFGD------NELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEll-gsfg~------~El~pe~L~~~~r~LkpgGi~I 450 (626)
++++. |--.. .++..+.|+.+.+.||+||.++
T Consensus 269 atDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~v 307 (347)
T COG1041 269 ATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIV 307 (347)
T ss_pred EecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEE
Confidence 99984 21111 1223457778889999999654
No 227
>KOG1709|consensus
Probab=96.97 E-value=0.0078 Score=59.95 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=67.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCC-cEEEEEecccccC--C-CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQS-DVTIVSEDMRTWN--A-PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~-nV~vi~~D~~~~~--~-p~k~Di 417 (626)
++.+||.||-|.|+...+ ++.+. . .+=+-||.+|... +.++.++|.++ ||.++.+.-++.- + .+.||-
T Consensus 101 kggrvLnVGFGMgIidT~-iQe~~---p-~~H~IiE~hp~V~---krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTF-IQEAP---P-DEHWIIEAHPDVL---KRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred CCceEEEeccchHHHHHH-HhhcC---C-cceEEEecCHHHH---HHHHhcccccccceEEEecchHhhhccccccCcce
Confidence 678999999999998754 33332 2 4667899999655 44556888755 6888888777653 2 367999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|.-+..+ -..|..-++.+.+-|+|||+|++-
T Consensus 173 I~yDTy~--e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 173 IYYDTYS--ELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred eEeechh--hHHHHHHHHHHHHhhhcCCCceEE
Confidence 8764431 011223345567778999999874
No 228
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=96.92 E-value=0.0088 Score=62.22 Aligned_cols=116 Identities=21% Similarity=0.232 Sum_probs=72.3
Q ss_pred HHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCC-CCC-------
Q psy17734 326 VQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQW-AQS------- 397 (626)
Q Consensus 326 I~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~-~~~------- 397 (626)
|..++.+..+.........+||+=|||.|.|+-. .|++ | ..|.|.|.|-.|.++-+.+....- .+.
T Consensus 40 I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~E---ia~~-G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~ 113 (270)
T PF07942_consen 40 ILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWE---IAKL-G--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFV 113 (270)
T ss_pred HHHHHHHhhcccccCCCccEEEEcCCCcchHHHH---Hhhc-c--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence 3344444443222234567899999999999854 4442 4 599999999877655444321100 010
Q ss_pred -------------------------------cEEEEEecccccCCC----CCccEEEeccccccCCC-CCcHHHHHHHHH
Q psy17734 398 -------------------------------DVTIVSEDMRTWNAP----EKADIMVSELLGSFGDN-ELSPECLYAAQK 441 (626)
Q Consensus 398 -------------------------------nV~vi~~D~~~~~~p----~k~DiIVSEllgsfg~~-El~pe~L~~~~r 441 (626)
++....||..++-.+ +++|.||+- +|.|- +.+-+.++.+.+
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~ 190 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEH 190 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHH
Confidence 244444555554333 489999885 45543 335778899999
Q ss_pred hcccCcEEE
Q psy17734 442 YLKEDGISI 450 (626)
Q Consensus 442 ~LkpgGi~I 450 (626)
.|||||+-|
T Consensus 191 lLkpgG~WI 199 (270)
T PF07942_consen 191 LLKPGGYWI 199 (270)
T ss_pred HhccCCEEE
Confidence 999999866
No 229
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.91 E-value=0.006 Score=63.79 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=46.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
++...+|||+|||.|.-..++... .+...++++||.|+.+. .++... ...-..++.........+...-.+.|+|
T Consensus 31 ~f~P~~vLD~GsGpGta~wAa~~~---~~~~~~~~~vd~s~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~DLv 106 (274)
T PF09243_consen 31 DFRPRSVLDFGSGPGTALWAAREV---WPSLKEYTCVDRSPEMLELAKRLL-RAGPNNRNAEWRRVLYRDFLPFPPDDLV 106 (274)
T ss_pred CCCCceEEEecCChHHHHHHHHHH---hcCceeeeeecCCHHHHHHHHHHH-hcccccccchhhhhhhcccccCCCCcEE
Confidence 456789999999999755332222 22225899999999877 444433 3221111111111111111111344999
Q ss_pred EeccccccCCCCCcH
Q psy17734 419 VSELLGSFGDNELSP 433 (626)
Q Consensus 419 VSEllgsfg~~El~p 433 (626)
|+ ++..+|+..
T Consensus 107 i~----s~~L~EL~~ 117 (274)
T PF09243_consen 107 IA----SYVLNELPS 117 (274)
T ss_pred EE----ehhhhcCCc
Confidence 88 566667643
No 230
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0065 Score=65.85 Aligned_cols=120 Identities=20% Similarity=0.166 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC----CCCc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKA 415 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~ 415 (626)
.++.+|||+.|+.|.=+..++++...-| ..|+|+|.++.-. ....++++-|.. ||.+++.|.+.... .++|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~--~iV~A~D~~~~Rl~~l~~nl~RlG~~--nv~~~~~d~~~~~~~~~~~~~f 230 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEG--AIVVAVDVSPKRLKRLRENLKRLGVR--NVIVVNKDARRLAELLPGGEKF 230 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCC--ceEEEEcCCHHHHHHHHHHHHHcCCC--ceEEEecccccccccccccCcC
Confidence 4678999999999988866555554323 4789999998654 666777777776 68899999876532 1369
Q ss_pred cEEEeccccc----cCCC-CC---------------cHHHHHHHHHhcccCcEEEeccceeeEEeccChHh
Q psy17734 416 DIMVSELLGS----FGDN-EL---------------SPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKL 466 (626)
Q Consensus 416 DiIVSEllgs----fg~~-El---------------~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l 466 (626)
|.|+.+-.-| +--+ +. ..++|+++.++|||||+++=+.||+ .|.+-...
T Consensus 231 D~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~--~~eENE~v 299 (355)
T COG0144 231 DRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL--TPEENEEV 299 (355)
T ss_pred cEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC--chhcCHHH
Confidence 9998865422 2100 00 1357888889999999999776654 44555443
No 231
>KOG1541|consensus
Probab=96.89 E-value=0.0028 Score=63.29 Aligned_cols=100 Identities=16% Similarity=0.121 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCC-CCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNA-PEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~-p~k~DiI 418 (626)
+..-|||||||+|.-+.. ....| ...++||+||.+. ++.+. ..+ =.++.+||-+ +++ |+.||-+
T Consensus 50 ~~~~iLDIGCGsGLSg~v----L~~~G--h~wiGvDiSpsML~~a~~~----e~e---gdlil~DMG~GlpfrpGtFDg~ 116 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSV----LSDSG--HQWIGVDISPSMLEQAVER----ELE---GDLILCDMGEGLPFRPGTFDGV 116 (270)
T ss_pred CCcEEEEeccCCCcchhe----eccCC--ceEEeecCCHHHHHHHHHh----hhh---cCeeeeecCCCCCCCCCccceE
Confidence 456899999999988742 22233 5899999999776 55542 122 2378889875 343 4789998
Q ss_pred EeccccccCCCCC----cHH-----HHHHHHHhcccCcEEEeccc
Q psy17734 419 VSELLGSFGDNEL----SPE-----CLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 419 VSEllgsfg~~El----~pe-----~L~~~~r~LkpgGi~IP~~~ 454 (626)
||--.-.+++|-. -|. ++......|++|+..+-|-|
T Consensus 117 ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 117 ISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred EEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 8733224444432 122 23446677999998887654
No 232
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.86 E-value=0.0046 Score=61.60 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=71.9
Q ss_pred HHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEE
Q psy17734 324 EAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIV 402 (626)
Q Consensus 324 ~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi 402 (626)
..|.+.+...++. .+..||+||+|||--+...+.+.. . .+-.--|.++... -....+...+..+. ..-+
T Consensus 12 ~pIl~vL~~~l~~-----~~~~vLEiaSGtGqHa~~FA~~lP--~--l~WqPSD~~~~~~~sI~a~~~~~~~~Nv-~~P~ 81 (204)
T PF06080_consen 12 DPILEVLKQYLPD-----SGTRVLEIASGTGQHAVYFAQALP--H--LTWQPSDPDDNLRPSIRAWIAEAGLPNV-RPPL 81 (204)
T ss_pred hHHHHHHHHHhCc-----cCceEEEEcCCccHHHHHHHHHCC--C--CEEcCCCCChHHHhhHHHHHHhcCCccc-CCCe
Confidence 4556666554432 233699999999999865444332 2 4556677777664 33344444555432 2234
Q ss_pred Eeccccc--C-------CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 403 SEDMRTW--N-------APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 403 ~~D~~~~--~-------~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
.-|+.+- . .++.+|.|++-=|-++...+....++.++.+.|++||.++-.
T Consensus 82 ~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 82 ALDVSAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred EeecCCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 4455432 2 135899999844444444444455778889999999998844
No 233
>KOG1501|consensus
Probab=96.84 E-value=0.0055 Score=66.44 Aligned_cols=190 Identities=12% Similarity=-0.015 Sum_probs=118.4
Q ss_pred cEEEEEecccccCCCCCccEEEeccccccCCC---CC-cHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHHHHhhh
Q psy17734 398 DVTIVSEDMRTWNAPEKADIMVSELLGSFGDN---EL-SPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSS 473 (626)
Q Consensus 398 nV~vi~~D~~~~~~p~k~DiIVSEllgsfg~~---El-~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~~~~~ 473 (626)
|++.+..=|. .+.+.|++..|..-.-..+ .+ .--........+-|+-.+.|+.+.+.+.|....+|++....+
T Consensus 416 n~e~vp~i~t---~~ds~~ivl~epf~~tam~PW~~L~F~Y~~~~l~~~~G~~~~V~P~~~~L~Ai~~kF~DL~~I~S~~ 492 (636)
T KOG1501|consen 416 NNESVPAIMT---SPDSPDIVLAEPFVKTAMNPWNHLRFLYDVEVLKMMHGDELRVEPHMGVLKAIPEKFEDLQNIASDV 492 (636)
T ss_pred ccccchhhhc---CCCCCceeecchhhhhccCchhheeeeeeHHHHHHhcCCceeeccccchhhhhhHHHHHHHhhcccc
Confidence 4555544333 2345688888874211111 11 000123345567899999999999999999999999976655
Q ss_pred ccc--cCCCcc-------cC------CCCcEEEEecCccccCCCeeEEEeeCCCCCCCCCCceeeEEEEEEeeCceEEEE
Q psy17734 474 MIK--EHQHPL-------YR------FEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGI 538 (626)
Q Consensus 474 ~~~--fd~~~~-------~~------~e~P~vv~l~~~~~Ls~p~~~~tFd~p~~~~~~~~~r~~~~~f~i~~~g~~hGf 538 (626)
... ||.+.. .. -|+|. +..+...+++|.++.+|++..+.. .....+.+.+.|.-|++
T Consensus 493 G~~~GFDl~~~Dei~~kA~~~~da~~~E~~L--WEY~~~~~~d~~eIL~F~~~~~V~------~Qk~~V~i~~~~sS~A~ 564 (636)
T KOG1501|consen 493 GTVNGFDLSFFDEISTKARTATDAIVDEQSL--WEYAGIVKGDAVEILRFPIDGRVS------SQKCVVNIDNMSSSNAI 564 (636)
T ss_pred cccccceeeehhHHHHhhchhhhhhhccchh--hhccCeecCCceeEEEeccCCccc------cceeEEEccCCCccccc
Confidence 432 443210 01 12232 344677889999999999876521 22677889999999999
Q ss_pred EEEEEEEecCceEEecCCC-----CCCCCCccceeEEEecCCceeeCCCCEEEEEEEEEecCceEEEE
Q psy17734 539 AGYFDTFLYKDINLSIHPD-----TLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVKVWYE 601 (626)
Q Consensus 539 ~~wFd~~L~~~v~lSt~P~-----t~s~~m~sW~q~~fpL~~Pi~V~~Gd~i~v~~~R~~d~~~VWyE 601 (626)
..|++.+|. ++.|||+-- .-....-+.+|.+++... .+.-+-++.++.-...+...+=++
T Consensus 565 ~mWME~~~~-~~nLSTGLL~~~~~G~~~WN~~~KQ~VYF~~t--~L~~~ksl~~~~~F~~~TGDI~~q 629 (636)
T KOG1501|consen 565 PMWMEWEFG-GINLSTGLLSISSAGVPEWNKGYKQGVYFPIT--ALRNDKSLCLHALFDKSTGDINFQ 629 (636)
T ss_pred eeeEEeeeC-ceeecccceeecCCCCcccCccccceeEEEhH--HhCCCceEEEEEEEcCCCCceEEE
Confidence 999999998 788888742 211112346788876432 233445677776655555555444
No 234
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.83 E-value=0.0031 Score=63.16 Aligned_cols=104 Identities=19% Similarity=0.153 Sum_probs=67.5
Q ss_pred EEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCCCCCccEEEeccc
Q psy17734 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNAPEKADIMVSELL 423 (626)
Q Consensus 346 VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~p~k~DiIVSEll 423 (626)
|.||||--|.|+..+++.+. + .+|+|+|+++.-. .|+++++..++.++ |+++.+|--+ ++..+.+|.||---|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~---~-~~~ia~DI~~gpL~~A~~~i~~~~l~~~-i~~rlgdGL~~l~~~e~~d~ivIAGM 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK---A-PKAIAVDINPGPLEKAKENIAKYGLEDR-IEVRLGDGLEVLKPGEDVDTIVIAGM 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS---E-EEEEEEESSHHHHHHHHHHHHHTT-TTT-EEEEE-SGGGG--GGG---EEEEEEE
T ss_pred CceeccchhHHHHHHHhcCC---C-CEEEEEeCCHHHHHHHHHHHHHcCCccc-EEEEECCcccccCCCCCCCEEEEecC
Confidence 68999999999976655443 2 4899999999766 88888889999998 9999999654 444344898877555
Q ss_pred cccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccChH
Q psy17734 424 GSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHK 465 (626)
Q Consensus 424 gsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~ 465 (626)
| .+++-++|++....++ +....-++|.....
T Consensus 76 G----G~lI~~ILe~~~~~~~-------~~~~lILqP~~~~~ 106 (205)
T PF04816_consen 76 G----GELIIEILEAGPEKLS-------SAKRLILQPNTHAY 106 (205)
T ss_dssp -----HHHHHHHHHHTGGGGT-------T--EEEEEESS-HH
T ss_pred C----HHHHHHHHHhhHHHhc-------cCCeEEEeCCCChH
Confidence 4 3456667776544443 22345578887764
No 235
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.82 E-value=0.025 Score=60.35 Aligned_cols=106 Identities=16% Similarity=0.102 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEE--EEeccccc----CC---
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTI--VSEDMRTW----NA--- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~v--i~~D~~~~----~~--- 411 (626)
++.+++|+|||.|.=+..++.+....+...+.++||+|..+. .+.+.+....+. +|++ +.+|..+. ..
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p--~l~v~~l~gdy~~~l~~l~~~~~ 153 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS--HVRCAGLLGTYDDGLAWLKRPEN 153 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC--CeEEEEEEecHHHHHhhcccccc
Confidence 456899999999988888788876555456899999998766 555555423443 2555 88888653 21
Q ss_pred CCCccEEEeccccccCCCCCc---HHHHHHHHH-hcccCcEEEe
Q psy17734 412 PEKADIMVSELLGSFGDNELS---PECLYAAQK-YLKEDGISIP 451 (626)
Q Consensus 412 p~k~DiIVSEllgsfg~~El~---pe~L~~~~r-~LkpgGi~IP 451 (626)
+....+++. +||-..|-.- ..+|..+.+ .|+|||.++-
T Consensus 154 ~~~~r~~~f--lGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 154 RSRPTTILW--LGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred cCCccEEEE--eCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 233566655 7754444332 346778888 8999988663
No 236
>KOG2187|consensus
Probab=96.78 E-value=0.00087 Score=74.15 Aligned_cols=60 Identities=23% Similarity=0.215 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEeccccc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW 409 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~ 409 (626)
.++.++|+-||||.++.. .++.. .+|++||.+|.++ -|+++++.||.. |.+++.|..+++
T Consensus 383 ~~k~llDv~CGTG~igla---la~~~---~~ViGvEi~~~aV~dA~~nA~~Ngis--Na~Fi~gqaE~~ 443 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLA---LARGV---KRVIGVEISPDAVEDAEKNAQINGIS--NATFIVGQAEDL 443 (534)
T ss_pred CCcEEEEEeecCCceehh---hhccc---cceeeeecChhhcchhhhcchhcCcc--ceeeeecchhhc
Confidence 568999999999999953 23322 4999999999988 889999999998 899999976664
No 237
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.009 Score=64.64 Aligned_cols=81 Identities=10% Similarity=0.161 Sum_probs=65.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcC----------------------------------Ccc-EEEEEeCCHHHH-HH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEAN----------------------------------RKV-RVYAVEKNMSAV-VG 385 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g----------------------------------~~~-~V~AVE~np~a~-~a 385 (626)
++..++|==||+|.+...++..+.... .+. .++|+|+++.++ .|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 345799999999999877666553110 001 377999999887 88
Q ss_pred HHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEeccc
Q psy17734 386 LKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELL 423 (626)
Q Consensus 386 ~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEll 423 (626)
+.+..+.|..+. |++.++|++++..+ +.+|+|||++.
T Consensus 271 k~NA~~AGv~d~-I~f~~~d~~~l~~~~~~~gvvI~NPP 308 (381)
T COG0116 271 KANARAAGVGDL-IEFKQADATDLKEPLEEYGVVISNPP 308 (381)
T ss_pred HHHHHhcCCCce-EEEEEcchhhCCCCCCcCCEEEeCCC
Confidence 888889999999 99999999999887 89999999986
No 238
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.70 E-value=0.024 Score=49.74 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=62.5
Q ss_pred EEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc--cCCCC--CccEEEec
Q psy17734 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT--WNAPE--KADIMVSE 421 (626)
Q Consensus 346 VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~--~~~p~--k~DiIVSE 421 (626)
++|+|||+|... .+..... ....++++|.++.+....+.......... +.++.+|... ..... .+|++.+.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG---RGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC---CCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999865 1122221 11389999999876644222221121111 6788888776 55543 79999443
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEeccce
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPYNYT 455 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t 455 (626)
....... ....+..+.+.|+|+|.++-....
T Consensus 127 ~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 127 LVLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 3322221 456778888999999987765443
No 239
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.63 E-value=0.0073 Score=63.83 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhh---cCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKE---ANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~---~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k 414 (626)
++.+|+|-.||+|.+...+++.... ...+.+++|+|.++.+. ++..++.-.+....+..+..+|.-.... ..+
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~ 125 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQK 125 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 5668999999999998665543210 01236999999999876 5555444445443335688888754433 368
Q ss_pred ccEEEeccc-ccc--CCCC--------------CcH--HHHHHHHHhcccCcE---EEecc
Q psy17734 415 ADIMVSELL-GSF--GDNE--------------LSP--ECLYAAQKYLKEDGI---SIPYN 453 (626)
Q Consensus 415 ~DiIVSEll-gsf--g~~E--------------l~p--e~L~~~~r~LkpgGi---~IP~~ 453 (626)
||+||+++. |.. ...+ .-. .++..+.+.||+||. ++|.+
T Consensus 126 ~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 126 FDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 999999874 222 1100 011 245667788999985 55543
No 240
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.43 Score=49.99 Aligned_cols=237 Identities=12% Similarity=0.155 Sum_probs=150.5
Q ss_pred EEeecCCCCC--CHHHHHHHHHhCCccEEEecCCCcc-cccccccccccccCCCCccccc-CCCCCcCccceEEEecCCc
Q psy17734 9 SVGLEYPTCY--NIQSQIESLAAECFDYAVLPLVHPR-FARHKDVDRYRVFGLPEAQVQS-LSSICPQWLKLIVCDIQCK 84 (626)
Q Consensus 9 ~~g~~~~~~~--~~~~~~~~~~~~~~df~~~pi~~~~-~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~v~~~s~w 84 (626)
.+|-...... ++..++..+.+.|.|-+-+...+|+ +.+.-... + ... ....|.+ ...++.-.|-.
T Consensus 3 ~~G~h~s~~~~~~~~~~~~~a~~iG~na~~if~~~~~~~~~~~~~~--~--------~~~~~~~~~~~-~~~i~vHApYl 71 (280)
T COG0648 3 LFGAHGSPAGGKSLVNAVERAREIGLNAFEIFLVNPRVWISPPLAE--D--------AIELFKAALKD-DVQLSVHAPYL 71 (280)
T ss_pred eEeeeecCCCchhHHHHHHHHHHcCCCEEEEEecCcccccCCCchH--H--------HHHHHHHhhcc-CceEEeeccee
Confidence 4555444333 4899999999999999999999983 33221000 0 011 0011122 35556677778
Q ss_pred ccccCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEEcC----CC---CChhhHHHHHHHHhccCCceEEEEEeeccCCCc
Q psy17734 85 LKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSL----DQ---PDFCNFARTLYAHSEKNMSYTAWIKVPIRPVDT 157 (626)
Q Consensus 85 ~~~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~~~----~~---~~~~~~ar~~~~~~~~~~~~~~~i~~p~~~~~~ 157 (626)
| +|.|+++.+++.|.+.|.+|+.-+..+|+..|++-| .. ..+.+++..|++.+.. .. +.+-++.+...
T Consensus 72 I-Nl~s~~~e~~ekS~~~l~~e~~r~~~lG~~~lv~HpG~~~~~~~e~~l~~i~~~Ln~~~~~-~~--v~i~~e~~age- 146 (280)
T COG0648 72 I-NLASPEKEKVEKSIERLIDEIDRCEQLGAKLLVFHPGSYLGQGKEEGLNRIAEALNELLEE-EG--VIILLENTAGE- 146 (280)
T ss_pred e-cCCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEECCccccCCCHHHHHHHHHHHHHHHhhc-cC--CeEEEEEeccc-
Confidence 8 999999999999999999999999999999999943 11 2456788889887753 22 56666666441
Q ss_pred cccccCCCCCCccchHHHHHHHHHhcCCCCceEEEEEec------CCCCCH----hHHhH---hhcc-cceEEEeccccc
Q psy17734 158 SMLRQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEIN------GDICDD----HELTR---WLGE-PLRCVFIPTHVF 223 (626)
Q Consensus 158 ~~~~~~~~~~~~~~~w~~W~~~r~~c~~~~~l~v~L~l~------~~~p~~----~~~~r---W~~E-Pv~~~~i~~~~f 223 (626)
.+......+.=..+..+|.-..+++|+|+-. .++-.. +++++ =+|- =++++-++-+-+
T Consensus 147 --------gs~~g~~F~~L~eii~~~~~~~~igvCiDtcH~~Aagy~~~~~~~~~~vl~~~d~~~G~~~~~~~Hlndsk~ 218 (280)
T COG0648 147 --------GSGKGTQFGELAEIIDLIEEKERIGVCIDTCHAFAAGYDIITEEDFEKVLNEFDKVLGLEYLKHIHLNDSKY 218 (280)
T ss_pred --------cCccccchhhHHHHHHhhcccCceEEEEEchhhhhccCCcCcHHHHHHHHHHHHHHhChhhheeEeecCccc
Confidence 1112234555556667888889999999876 355552 44444 4664 889999999998
Q ss_pred ccCC---------CCCccCCHhHHHHHHHHHHhcceEEEEcccCCCChhhHHHHHHHHHh
Q psy17734 224 QTNK---------AGYPVLNASLANFIKKILEKNLQVVIQGVNRHQSYLHYVQYMQYLKK 274 (626)
Q Consensus 224 ~~n~---------~g~pvL~k~~q~~i~~~~~~~~~~~l~~~~~~~~~~~y~~yl~~l~~ 274 (626)
-... .|+.=. +....++....=.++++|+... .+..|.++|++|.+
T Consensus 219 ~~G~~kDRH~~ig~G~ig~-e~l~~~~~d~~~~~iPiIlETP----~~e~~a~ei~~l~~ 273 (280)
T COG0648 219 PLGSNKDRHENIGEGYIGF-EALRKILKDFRIDGIPIILETP----NLEGDAEEIKKLRE 273 (280)
T ss_pred ccccccccccccCCCCCCh-HHHHHHHhcccccCCeEEEeCC----CccccHHHHHHHHH
Confidence 5433 244322 2222333332223355677653 24556777777764
No 241
>PRK10742 putative methyltransferase; Provisional
Probab=96.18 E-value=0.018 Score=59.01 Aligned_cols=73 Identities=14% Similarity=0.098 Sum_probs=53.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHH-------cCC-CCCcEEEEEecccccC--CCC
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKE-------EQW-AQSDVTIVSEDMRTWN--APE 413 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~-------n~~-~~~nV~vi~~D~~~~~--~p~ 413 (626)
+|||+-||+|..+. .++.. |+ +|++||.||.+. .....+++ ..| ..+ ++++++|..++- .+.
T Consensus 91 ~VLD~TAGlG~Da~---~las~-G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~r-i~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 91 DVVDATAGLGRDAF---VLASV-GC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQER-LQLIHASSLTALTDITP 163 (250)
T ss_pred EEEECCCCccHHHH---HHHHc-CC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhce-EEEEeCcHHHHHhhCCC
Confidence 89999999999995 44443 53 799999999765 44444433 122 244 999999998863 345
Q ss_pred CccEEEecccc
Q psy17734 414 KADIMVSELLG 424 (626)
Q Consensus 414 k~DiIVSEllg 424 (626)
.||+|..++|-
T Consensus 164 ~fDVVYlDPMf 174 (250)
T PRK10742 164 RPQVVYLDPMF 174 (250)
T ss_pred CCcEEEECCCC
Confidence 79999999873
No 242
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.16 E-value=0.024 Score=59.79 Aligned_cols=76 Identities=11% Similarity=0.085 Sum_probs=46.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc-CCCCCcEEEEEecccc-c-----CCCCC
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE-QWAQSDVTIVSEDMRT-W-----NAPEK 414 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n-~~~~~nV~vi~~D~~~-~-----~~p~k 414 (626)
..++||||+|...+ ..+-+++..| .+++|.|+++.++ .|+++++.| ++.++ |+++...-.. + ...++
T Consensus 103 ~v~glDIGTGAscI--YpLLg~~~~~--W~fvaTdID~~sl~~A~~nv~~N~~L~~~-I~l~~~~~~~~i~~~i~~~~e~ 177 (299)
T PF05971_consen 103 KVRGLDIGTGASCI--YPLLGAKLYG--WSFVATDIDPKSLESARENVERNPNLESR-IELRKQKNPDNIFDGIIQPNER 177 (299)
T ss_dssp --EEEEES-TTTTH--HHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-TTT-EEEEE--ST-SSTTTSTT--S-
T ss_pred ceEeecCCccHHHH--HHHHhhhhcC--CeEEEecCCHHHHHHHHHHHHhccccccc-eEEEEcCCccccchhhhcccce
Confidence 56899999997633 1233444455 6999999999887 888999999 99998 9998764332 1 11378
Q ss_pred ccEEEeccc
Q psy17734 415 ADIMVSELL 423 (626)
Q Consensus 415 ~DiIVSEll 423 (626)
+|..+|++.
T Consensus 178 ~dftmCNPP 186 (299)
T PF05971_consen 178 FDFTMCNPP 186 (299)
T ss_dssp EEEEEE---
T ss_pred eeEEecCCc
Confidence 999999986
No 243
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.15 E-value=0.21 Score=52.02 Aligned_cols=106 Identities=19% Similarity=0.140 Sum_probs=71.4
Q ss_pred EEeecCCCCCCHHHHHHHHHhCCccEEEecCCCccccc-ccccccccccCCCCcccccCCCCCcCccceEEEecCCc-cc
Q psy17734 9 SVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFAR-HKDVDRYRVFGLPEAQVQSLSSICPQWLKLIVCDIQCK-LK 86 (626)
Q Consensus 9 ~~g~~~~~~~~~~~~~~~~~~~~~df~~~pi~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~s~w-~~ 86 (626)
.+|..+.....+.+++..+.+.|||++=+-+.+|++-. ...... . ...+.+-+.. ..-....+..-+++ +
T Consensus 2 ~~g~h~s~~g~~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~-~----~~~~~~~~~~--~~~~~~~i~~Hapy~i- 73 (274)
T TIGR00587 2 LLGAHVSAAGGLQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEE-V----IDWFKAALET--NKNLSQIVLVHAPYLI- 73 (274)
T ss_pred ceEEEEeccCCHHHHHHHHHHhCCCEEEEEecCccccCCCCCCHH-H----HHHHHHHHHH--cCCCCcceeccCCeee-
Confidence 35666666678999999999999999999999987432 111100 0 0001000100 00001113344555 7
Q ss_pred ccCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEEcC
Q psy17734 87 DFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSL 122 (626)
Q Consensus 87 ~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~~~ 122 (626)
.+.|+|+.+|+.|.+.+++++..|+.+|.+.|.+.+
T Consensus 74 Nlas~~~~~r~~sv~~~~~~i~~A~~lga~~vv~H~ 109 (274)
T TIGR00587 74 NLASPDEEKEEKSLDVLDEELKRCELLGIMLYNFHP 109 (274)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 999999999999999999999999999999988843
No 244
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=95.97 E-value=0.016 Score=60.86 Aligned_cols=109 Identities=18% Similarity=0.091 Sum_probs=74.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---APEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p~k~Di 417 (626)
++..|||+.||.|.=+..++ ...+.+..|+|+|.++.-. ....+.++.|.. +|.++..|.+... ....||.
T Consensus 85 ~~~~VLD~CAapGgKt~~la---~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~--~v~~~~~D~~~~~~~~~~~~fd~ 159 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLA---ELMGNKGEIVANDISPKRLKRLKENLKRLGVF--NVIVINADARKLDPKKPESKFDR 159 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHH---HHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S--SEEEEESHHHHHHHHHHTTTEEE
T ss_pred ccccccccccCCCCceeeee---ecccchhHHHHhccCHHHHHHHHHHHHhcCCc--eEEEEeeccccccccccccccch
Confidence 67889999999998875433 3333346999999998766 444555566654 6999989988873 2346999
Q ss_pred EEeccccc----cCCCCC----------------cHHHHHHHHHhc----ccCcEEEeccce
Q psy17734 418 MVSELLGS----FGDNEL----------------SPECLYAAQKYL----KEDGISIPYNYT 455 (626)
Q Consensus 418 IVSEllgs----fg~~El----------------~pe~L~~~~r~L----kpgGi~IP~~~t 455 (626)
|+.+..-| +.-+.. -.++|+.+.+++ ||||+++=..+|
T Consensus 160 VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 160 VLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred hhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 99876422 221111 023677788899 999999855544
No 245
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.79 E-value=0.04 Score=51.74 Aligned_cols=87 Identities=26% Similarity=0.384 Sum_probs=58.3
Q ss_pred EEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--CC-CccEEEecccccc--CCCCCc--H----HHHHHH
Q psy17734 372 RVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--PE-KADIMVSELLGSF--GDNELS--P----ECLYAA 439 (626)
Q Consensus 372 ~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~-k~DiIVSEllgsf--g~~El~--p----e~L~~~ 439 (626)
+|||.|+-+.|+ .+++.+...+..++ |++++..-+++.. ++ ++|.+|-++ |+. +|.+.. + +.++++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~-v~li~~sHe~l~~~i~~~~v~~~iFNL-GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDR-VTLILDSHENLDEYIPEGPVDAAIFNL-GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSG-EEEEES-GGGGGGT--S--EEEEEEEE-SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCc-EEEEECCHHHHHhhCccCCcCEEEEEC-CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 699999999998 77888888888777 9999988777653 44 899999875 443 344332 2 245666
Q ss_pred HHhcccCcEEEeccceeeEEe
Q psy17734 440 QKYLKEDGISIPYNYTSYIAP 460 (626)
Q Consensus 440 ~r~LkpgGi~IP~~~t~y~ap 460 (626)
.+.|+|||+++--.|.=+-..
T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG 99 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHPGG 99 (140)
T ss_dssp HHHEEEEEEEEEEE--STCHH
T ss_pred HHhhccCCEEEEEEeCCCCCC
Confidence 788999999887666544433
No 246
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.77 E-value=0.012 Score=65.26 Aligned_cols=105 Identities=15% Similarity=0.199 Sum_probs=58.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVS 420 (626)
.-.++||+|||+|.++. ....+ + +.+..+-.+.......|.+.+.|...- +.++ -...++.| ..||+|=|
T Consensus 117 ~iR~~LDvGcG~aSF~a---~l~~r-~--V~t~s~a~~d~~~~qvqfaleRGvpa~-~~~~--~s~rLPfp~~~fDmvHc 187 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGA---YLLER-N--VTTMSFAPNDEHEAQVQFALERGVPAM-IGVL--GSQRLPFPSNAFDMVHC 187 (506)
T ss_pred ceEEEEeccceeehhHH---HHhhC-C--ceEEEcccccCCchhhhhhhhcCcchh-hhhh--ccccccCCccchhhhhc
Confidence 34579999999999984 33331 1 344444443222222222223343221 1111 12345554 67999844
Q ss_pred -ccccccCCCCCcHHHHHHHHHhcccCcEEEeccceee
Q psy17734 421 -ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSY 457 (626)
Q Consensus 421 -Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y 457 (626)
-.+-.+..++++ .|..+.|.|+|||.++=+.--+|
T Consensus 188 src~i~W~~~~g~--~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 188 SRCLIPWHPNDGF--LLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred ccccccchhcccc--eeehhhhhhccCceEEecCCccc
Confidence 223233334332 67788999999999997766555
No 247
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.71 E-value=0.079 Score=52.96 Aligned_cols=122 Identities=15% Similarity=0.107 Sum_probs=63.4
Q ss_pred hCCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHc
Q psy17734 313 EKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEE 392 (626)
Q Consensus 313 e~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n 392 (626)
.+.|.....|++.|.+. +..+|+++|.=.|.=..+.+...+..|.+.+|++||.+..... ++.....
T Consensus 15 ~q~P~Dm~~~qeli~~~------------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~-~~a~e~h 81 (206)
T PF04989_consen 15 IQYPQDMVAYQELIWEL------------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN-RKAIESH 81 (206)
T ss_dssp SS-HHHHHHHHHHHHHH--------------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT---S-GGGG-
T ss_pred hcCHHHHHHHHHHHHHh------------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc-hHHHhhc
Confidence 45566667788777664 3468999999887655555555555555579999999632221 1112223
Q ss_pred CCCCCcEEEEEecccccCC---------CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 393 QWAQSDVTIVSEDMRTWNA---------PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 393 ~~~~~nV~vi~~D~~~~~~---------p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+..+ |++++||..+.+. +....+||- ++--..+..-..|+....++++|+.+|-
T Consensus 82 p~~~r-I~~i~Gds~d~~~~~~v~~~~~~~~~vlVil---Ds~H~~~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 82 PMSPR-ITFIQGDSIDPEIVDQVRELASPPHPVLVIL---DSSHTHEHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp ---TT-EEEEES-SSSTHHHHTSGSS----SSEEEEE---SS----SSHHHHHHHHHHT--TT-EEEE
T ss_pred cccCc-eEEEECCCCCHHHHHHHHHhhccCCceEEEE---CCCccHHHHHHHHHHhCccCCCCCEEEE
Confidence 45566 9999999987531 123345543 3333345555566777789999999873
No 248
>KOG4589|consensus
Probab=95.60 E-value=0.023 Score=55.53 Aligned_cols=95 Identities=23% Similarity=0.239 Sum_probs=61.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEe-cccccC--------C
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE-DMRTWN--------A 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~-D~~~~~--------~ 411 (626)
.++.+|||+||-.|.++.- |-++.+.+..|.+||.-+. .... .++++.+ |+++-. +
T Consensus 68 ~p~~~VlD~G~APGsWsQV---avqr~~p~g~v~gVDllh~----------~p~~--Ga~~i~~~dvtdp~~~~ki~e~l 132 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQV---AVQRVNPNGMVLGVDLLHI----------EPPE--GATIIQGNDVTDPETYRKIFEAL 132 (232)
T ss_pred CCCCEEEEccCCCChHHHH---HHHhhCCCceEEEEeeeec----------cCCC--CcccccccccCCHHHHHHHHHhC
Confidence 3678999999999999964 4455566679999997531 1111 3777776 666532 2
Q ss_pred C-CCccEEEeccccc-----cCCCCCcHHH----HHHHHHhcccCcEEE
Q psy17734 412 P-EKADIMVSELLGS-----FGDNELSPEC----LYAAQKYLKEDGISI 450 (626)
Q Consensus 412 p-~k~DiIVSEllgs-----fg~~El~pe~----L~~~~r~LkpgGi~I 450 (626)
| .++|+|+|++... ..|++.+-+. |.-+-.+++|+|.++
T Consensus 133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fv 181 (232)
T KOG4589|consen 133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFV 181 (232)
T ss_pred CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEE
Confidence 2 6899999987532 2334333332 322335678999877
No 249
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=95.54 E-value=0.043 Score=62.57 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcC----CccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEAN----RKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN------ 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g----~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~------ 410 (626)
...+|+|.|||+|.+...++......+ .+..++|+|.++.++ .+..++...+ .. ++.+++.|.....
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~-~~~i~~~d~l~~~~~~~~~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LL-EINVINFNSLSYVLLNIES 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CC-Cceeeeccccccccccccc
Confidence 346899999999999877766554211 235899999999887 5555554433 11 2566666543211
Q ss_pred CCCCccEEEeccc
Q psy17734 411 APEKADIMVSELL 423 (626)
Q Consensus 411 ~p~k~DiIVSEll 423 (626)
..++||+||+++.
T Consensus 109 ~~~~fD~IIgNPP 121 (524)
T TIGR02987 109 YLDLFDIVITNPP 121 (524)
T ss_pred ccCcccEEEeCCC
Confidence 1258999999985
No 250
>PHA01634 hypothetical protein
Probab=95.51 E-value=0.049 Score=50.16 Aligned_cols=70 Identities=23% Similarity=0.170 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++++|+|||++-|--+...+..++ .+|+|+|+++... ...++.+.+..-++ ..-.. +|+.. +.+|+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-----K~Vva~E~~~kl~k~~een~k~nnI~DK-~v~~~----eW~~~Y~~~Di~~ 97 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-----SFVVQYEKEEKLRKKWEEVCAYFNICDK-AVMKG----EWNGEYEDVDIFV 97 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-----cEEEEeccCHHHHHHHHHHhhhheeeec-eeecc----cccccCCCcceEE
Confidence 678999999999988876555554 4999999999776 55555555544444 22211 45432 6899987
Q ss_pred ec
Q psy17734 420 SE 421 (626)
Q Consensus 420 SE 421 (626)
.+
T Consensus 98 iD 99 (156)
T PHA01634 98 MD 99 (156)
T ss_pred EE
Confidence 63
No 251
>KOG1227|consensus
Probab=95.43 E-value=0.0056 Score=63.66 Aligned_cols=94 Identities=27% Similarity=0.187 Sum_probs=69.9
Q ss_pred CCEEEEEcCCCchHHH-HHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 343 VTTIMVVGAGRGPLVT-ASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~-~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
+.+|.|+-||-|-++. +.+.|++ ..|+|+|.||.++.++ +.+..|+..++ -.++.+|-|...+...+|-|.-
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agA-----k~V~A~EwNp~svEaLrR~~~~N~V~~r-~~i~~gd~R~~~~~~~AdrVnL 268 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGA-----KTVFACEWNPWSVEALRRNAEANNVMDR-CRITEGDNRNPKPRLRADRVNL 268 (351)
T ss_pred cchhhhhhcccceEEeehhhccCc-----cEEEEEecCHHHHHHHHHHHHhcchHHH-HHhhhccccccCccccchheee
Confidence 4689999999999987 6666665 5999999999998665 45667887777 8899999999988888999876
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
-++-|. .++.+. +-+.|||.|-
T Consensus 269 GLlPSs--e~~W~~----A~k~Lk~egg 290 (351)
T KOG1227|consen 269 GLLPSS--EQGWPT----AIKALKPEGG 290 (351)
T ss_pred cccccc--ccchHH----HHHHhhhcCC
Confidence 554432 122232 4456787554
No 252
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.34 E-value=0.058 Score=58.97 Aligned_cols=97 Identities=20% Similarity=0.168 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhh-cCCccEEEEEeCCHHHH-HHHHHHHHcCCCC-CcEEEEEecccccC--CCCCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKE-ANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQ-SDVTIVSEDMRTWN--APEKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~-~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~-~nV~vi~~D~~~~~--~p~k~Di 417 (626)
..+|||.=||+|.=+ ++.+++ .+. .+|++-|.|+.|+ ...++++.|+..+ + |++.+.|+..+- ..++||+
T Consensus 50 ~~~~lDalaasGvR~---iRy~~E~~~~-~~v~~NDi~~~a~~~i~~N~~~N~~~~~~-~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 50 PIRVLDALAASGVRG---IRYAKELAGV-DKVTANDISPEAVELIKRNLELNGLEDER-IEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp -EEEEETT-TTSHHH---HHHHHH-SSE-CEEEEEES-HHHHHHHHHHHHHCT-SGCC-EEEEES-HHHHHCHSTT-EEE
T ss_pred CceEEeccccccHHH---HHHHHHcCCC-CEEEEecCCHHHHHHHHHhHhhccccCce-EEEehhhHHHHhhhccccCCE
Confidence 468999999999987 466666 343 5999999999988 7788888999987 6 999999988864 5689999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|=-++.|+ .-.+|+++-+.+|.||++.
T Consensus 125 IDlDPfGS------p~pfldsA~~~v~~gGll~ 151 (377)
T PF02005_consen 125 IDLDPFGS------PAPFLDSALQAVKDGGLLC 151 (377)
T ss_dssp EEE--SS--------HHHHHHHHHHEEEEEEEE
T ss_pred EEeCCCCC------ccHhHHHHHHHhhcCCEEE
Confidence 97666542 2358999999999999865
No 253
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=95.32 E-value=0.041 Score=56.93 Aligned_cols=105 Identities=22% Similarity=0.179 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHH-----------------cC----C------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKE-----------------EQ----W------ 394 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~-----------------n~----~------ 394 (626)
++.++||||||.-+... +.|.... .+|+..|-.+.-...++.-.+ .| |
T Consensus 56 ~g~~llDiGsGPtiy~~--lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQL--LSACEWF---EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp -EEEEEEES-TT--GGG--TTGGGTE---EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhh--hhHHHhh---cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 56799999999866542 3444433 389999988754432221111 11 1
Q ss_pred -CCCcEE-EEEecccccC-------CCCCccEEEecccc-ccC-CCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 395 -AQSDVT-IVSEDMRTWN-------APEKADIMVSELLG-SFG-DNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 395 -~~~nV~-vi~~D~~~~~-------~p~k~DiIVSEllg-sfg-~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
... |+ |+.+|+.+.+ .|.++|+|+|-+.- +.. +.+.-...+..+.++|||||.+|-.
T Consensus 131 lR~~-Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 131 LRRA-VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp HHHH-EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHh-hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 112 44 8889998743 24569999983311 111 1111123566677889999998853
No 254
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.10 E-value=0.14 Score=50.94 Aligned_cols=99 Identities=20% Similarity=0.260 Sum_probs=64.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC----CCC
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEK 414 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k 414 (626)
..++..||=+||-+|.-+...... .+ +..|||||.+|... ..+...... . |+--|-+|++.-+. -++
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDI---v~-~G~iYaVEfs~R~~reLl~~a~~R---~-Ni~PIL~DA~~P~~Y~~~Ve~ 145 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDI---VG-EGRIYAVEFSPRPMRELLDVAEKR---P-NIIPILEDARKPEKYRHLVEK 145 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhc---cC-CCcEEEEEecchhHHHHHHHHHhC---C-CceeeecccCCcHHhhhhccc
Confidence 347889999999999877533332 33 35999999998554 222222221 1 58888889886542 278
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+|+|..+.-- .....-+.+.++.|||+||.++
T Consensus 146 VDviy~DVAQ----p~Qa~I~~~Na~~FLk~~G~~~ 177 (231)
T COG1889 146 VDVIYQDVAQ----PNQAEILADNAEFFLKKGGYVV 177 (231)
T ss_pred ccEEEEecCC----chHHHHHHHHHHHhcccCCeEE
Confidence 9999886521 1112234577888999998543
No 255
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.06 E-value=0.066 Score=53.75 Aligned_cols=83 Identities=25% Similarity=0.293 Sum_probs=57.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC----CCccEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP----EKADIM 418 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p----~k~DiI 418 (626)
..++|||||=+.-. +....+. ..|++||.|+. .-.|.+.|.-+.++| ++||+|
T Consensus 52 ~lrlLEVGals~~N------~~s~~~~-fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvI 108 (219)
T PF11968_consen 52 KLRLLEVGALSTDN------ACSTSGW-FDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVI 108 (219)
T ss_pred cceEEeecccCCCC------cccccCc-eeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEE
Confidence 36899999953322 1122232 58999999961 144667787776654 799999
Q ss_pred EeccccccCC-CCCcHHHHHHHHHhcccCcE
Q psy17734 419 VSELLGSFGD-NELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 419 VSEllgsfg~-~El~pe~L~~~~r~LkpgGi 448 (626)
++-++-.|.. ...--+|+..+.++|+|+|.
T Consensus 109 s~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 109 SLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred EEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 8877655443 33346799999999999998
No 256
>KOG3178|consensus
Probab=95.05 E-value=0.15 Score=54.63 Aligned_cols=93 Identities=24% Similarity=0.298 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHH-HHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVG-LKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a-~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
-.+.+|+|+|.|.+....+. . +. +|-+++.....+.+ ..... . .|+-+.+||.+- .| +.|+|+.-
T Consensus 178 v~~avDvGgGiG~v~k~ll~--~-fp---~ik~infdlp~v~~~a~~~~-----~-gV~~v~gdmfq~-~P-~~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS--K-YP---HIKGINFDLPFVLAAAPYLA-----P-GVEHVAGDMFQD-TP-KGDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH--h-CC---CCceeecCHHHHHhhhhhhc-----C-Ccceeccccccc-CC-CcCeEEEE
Confidence 46899999999999876665 2 32 67788888654433 32221 2 389999999876 44 57899887
Q ss_pred cc-cccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 422 LL-GSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 422 ll-gsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|+ |++.|. ..-.+|..+.+-|+|+|.+|
T Consensus 244 WiLhdwtDe-dcvkiLknC~~sL~~~GkIi 272 (342)
T KOG3178|consen 244 WILHDWTDE-DCVKILKNCKKSLPPGGKII 272 (342)
T ss_pred eecccCChH-HHHHHHHHHHHhCCCCCEEE
Confidence 74 555554 34668888999999988654
No 257
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.69 E-value=0.18 Score=50.79 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=76.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccc-cCCCCCccEEEe
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRT-WNAPEKADIMVS 420 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~-~~~p~k~DiIVS 420 (626)
+..+.|+||--|-|...+++-.. + ..++|+|.++... .+.+++.++++.++ +++..+|.-. +.....+|++|-
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~---~-~~~va~eV~~gpl~~a~~~v~~~~l~~~-i~vr~~dgl~~l~~~d~~d~ivI 91 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNP---A-STAVAGEVVPGPLESAIRNVKKNNLSER-IDVRLGDGLAVLELEDEIDVIVI 91 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCC---c-ceEEEeecccCHHHHHHHHHHhcCCcce-EEEeccCCccccCccCCcCEEEE
Confidence 44599999999999976554322 2 5999999999877 78889999999998 9999999854 334458999877
Q ss_pred ccccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEeccChH
Q psy17734 421 ELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHK 465 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~ 465 (626)
--|| +-++-++|+...+.|+ .--..-++|...+.
T Consensus 92 AGMG----G~lI~~ILee~~~~l~-------~~~rlILQPn~~~~ 125 (226)
T COG2384 92 AGMG----GTLIREILEEGKEKLK-------GVERLILQPNIHTY 125 (226)
T ss_pred eCCc----HHHHHHHHHHhhhhhc-------CcceEEECCCCCHH
Confidence 5554 2345666666555443 33445577877764
No 258
>KOG3987|consensus
Probab=94.65 E-value=0.0079 Score=59.52 Aligned_cols=92 Identities=26% Similarity=0.301 Sum_probs=56.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-CCCCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-NAPEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-~~p~k~DiIV 419 (626)
.++.++||+|||.|-++.. .+... -+|||.|.|..+.-.++..+.|- ++.+ +| +..-|+|+|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~---m~p~f---eevyATElS~tMr~rL~kk~ynV-----l~~~-----ew~~t~~k~dli~ 174 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLR---MAPTF---EEVYATELSWTMRDRLKKKNYNV-----LTEI-----EWLQTDVKLDLIL 174 (288)
T ss_pred CCCeeEEeccCCCcchhhh---hcchH---HHHHHHHhhHHHHHHHhhcCCce-----eeeh-----hhhhcCceeehHH
Confidence 3568999999999999853 33322 27999999987775555432221 1211 22 2235789987
Q ss_pred e-ccccccCCCCCcHHHHHHHHHhccc-CcEEEe
Q psy17734 420 S-ELLGSFGDNELSPECLYAAQKYLKE-DGISIP 451 (626)
Q Consensus 420 S-Ellgsfg~~El~pe~L~~~~r~Lkp-gGi~IP 451 (626)
+ ++++-+.+ .-..|+.+...|+| +|.+|-
T Consensus 175 clNlLDRc~~---p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 175 CLNLLDRCFD---PFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred HHHHHHhhcC---hHHHHHHHHHHhccCCCcEEE
Confidence 6 44432211 13467778888888 777664
No 259
>KOG1562|consensus
Probab=94.57 E-value=0.066 Score=55.90 Aligned_cols=112 Identities=14% Similarity=0.212 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH--HcCCCCCcEEEEEecccccC---CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK--EEQWAQSDVTIVSEDMRTWN---APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~--~n~~~~~nV~vi~~D~~~~~---~p~k~ 415 (626)
..++||+||.|.|+.-+..++. +..+ .+.-+|.+.+.+ ..++... ..++.++.|.+.-||-..+- ..+++
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve---~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVE---NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-cccc---ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 4578999999999987654444 2222 788888887655 5555442 35677767999999865541 13789
Q ss_pred cEEEeccccccCCCCCc--HHHHHHHHHhcccCcEEEeccceee
Q psy17734 416 DIMVSELLGSFGDNELS--PECLYAAQKYLKEDGISIPYNYTSY 457 (626)
Q Consensus 416 DiIVSEllgsfg~~El~--pe~L~~~~r~LkpgGi~IP~~~t~y 457 (626)
|+|+.|.-.-.|..+.. .....-..+.||+||+.+-+.-.++
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~w 240 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMW 240 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceeh
Confidence 99998764433333331 2344556788999999887654433
No 260
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.44 E-value=0.29 Score=50.84 Aligned_cols=109 Identities=13% Similarity=0.135 Sum_probs=63.6
Q ss_pred CCEEEEEcCCC--chHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---------
Q psy17734 343 VTTIMVVGAGR--GPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--------- 410 (626)
Q Consensus 343 ~~~VLDvG~Gt--G~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--------- 410 (626)
-.-.||+|||- -..+- +.++......+|+-||.+|... .++..+..+. .++ ..++.+|+++..
T Consensus 69 IrQFLDlGsGlPT~~nvH---evAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-~g~-t~~v~aD~r~p~~iL~~p~~~ 143 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVH---EVAQRVAPDARVVYVDNDPVVLAHARALLADNP-RGR-TAYVQADLRDPEAILAHPEVR 143 (267)
T ss_dssp --EEEEET--S--SS-HH---HHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-TSE-EEEEE--TT-HHHHHCSHHHH
T ss_pred cceEEEcccCCCCCCCHh---HHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-Ccc-EEEEeCCCCCHHHHhcCHHHH
Confidence 35699999993 22332 2333333447999999999877 3344443332 233 899999999743
Q ss_pred ----CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecccee
Q psy17734 411 ----APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTS 456 (626)
Q Consensus 411 ----~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~ 456 (626)
+.+++=+++..+|.+..+.+....++......|.||..++-+..|.
T Consensus 144 ~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 144 GLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp CC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred hcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 2367888888888877776766778888889999999888766654
No 261
>KOG2730|consensus
Probab=93.91 E-value=0.075 Score=53.32 Aligned_cols=61 Identities=13% Similarity=0.078 Sum_probs=47.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN 410 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~ 410 (626)
..+|+|.-||-|.-... .|++ + ..|+|||.+|.-+ .|+.+++-.|..++ |++|+||..++-
T Consensus 95 ~~~iidaf~g~gGntiq--fa~~--~--~~VisIdiDPikIa~AkhNaeiYGI~~r-ItFI~GD~ld~~ 156 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQ--FALQ--G--PYVIAIDIDPVKIACARHNAEVYGVPDR-ITFICGDFLDLA 156 (263)
T ss_pred cchhhhhhhcCCchHHH--HHHh--C--CeEEEEeccHHHHHHHhccceeecCCce-eEEEechHHHHH
Confidence 35789999998877642 3332 3 3999999999644 78888777899998 999999988753
No 262
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.36 E-value=0.68 Score=50.07 Aligned_cols=91 Identities=25% Similarity=0.371 Sum_probs=56.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEE-ec-----ccccCCCCCcc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVS-ED-----MRTWNAPEKAD 416 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~-~D-----~~~~~~p~k~D 416 (626)
.+|+++||| +++++++.+++..|+ .+|+++|.++.-. .|++.. +.. +.+.. .+ +.+......+|
T Consensus 170 ~~V~V~GaG--pIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~-----g~~-~~~~~~~~~~~~~~~~~t~g~g~D 240 (350)
T COG1063 170 GTVVVVGAG--PIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAG-----GAD-VVVNPSEDDAGAEILELTGGRGAD 240 (350)
T ss_pred CEEEEECCC--HHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhC-----CCe-EeecCccccHHHHHHHHhCCCCCC
Confidence 389999987 466666777777787 5999999998655 444422 111 11111 11 01111123699
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+++= ..| .+..+..+.+.++++|.++-
T Consensus 241 ~vie-~~G-------~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 241 VVIE-AVG-------SPPALDQALEALRPGGTVVV 267 (350)
T ss_pred EEEE-CCC-------CHHHHHHHHHHhcCCCEEEE
Confidence 9863 333 56688888899999998663
No 263
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.30 E-value=0.73 Score=49.59 Aligned_cols=92 Identities=21% Similarity=0.261 Sum_probs=59.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEec-ccccC-CCCCccE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSED-MRTWN-APEKADI 417 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D-~~~~~-~p~k~Di 417 (626)
.++..|+.+|+| -|+.++++.|+..| .+|+|++.++.-. .+++. +. -.++.+. ....+ ..+.+|+
T Consensus 165 ~pG~~V~I~G~G--GlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l------GA--d~~i~~~~~~~~~~~~~~~d~ 232 (339)
T COG1064 165 KPGKWVAVVGAG--GLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL------GA--DHVINSSDSDALEAVKEIADA 232 (339)
T ss_pred CCCCEEEEECCc--HHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh------CC--cEEEEcCCchhhHHhHhhCcE
Confidence 478899999999 46667788888778 4999999998644 44433 21 3333322 22221 1245999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
++.-. . +.-+...-+.|+++|.++--.
T Consensus 233 ii~tv--------~-~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 233 IIDTV--------G-PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred EEECC--------C-hhhHHHHHHHHhcCCEEEEEC
Confidence 98721 1 345667778899999877443
No 264
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.29 E-value=0.68 Score=52.61 Aligned_cols=98 Identities=13% Similarity=0.161 Sum_probs=58.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEe-c--------ccccCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE-D--------MRTWNA 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~-D--------~~~~~~ 411 (626)
.++.+|+++|||. .++.++.+++..|+ +|+++|.++......+. ++.+ ...++. + .+++..
T Consensus 163 ~pg~kVlViGaG~--iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aes-----lGA~-~v~i~~~e~~~~~~gya~~~s~ 232 (509)
T PRK09424 163 VPPAKVLVIGAGV--AGLAAIGAAGSLGA--IVRAFDTRPEVAEQVES-----MGAE-FLELDFEEEGGSGDGYAKVMSE 232 (509)
T ss_pred cCCCEEEEECCcH--HHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH-----cCCe-EEEeccccccccccchhhhcch
Confidence 3578999999985 66666888888886 79999999865532222 2211 221211 0 011110
Q ss_pred C-------------CCccEEEeccccccCC-CCCcHHHH-HHHHHhcccCcEEEec
Q psy17734 412 P-------------EKADIMVSELLGSFGD-NELSPECL-YAAQKYLKEDGISIPY 452 (626)
Q Consensus 412 p-------------~k~DiIVSEllgsfg~-~El~pe~L-~~~~r~LkpgGi~IP~ 452 (626)
. ..+|++|.- .+. ....|..+ +..-+.+||||+++--
T Consensus 233 ~~~~~~~~~~~~~~~gaDVVIet----ag~pg~~aP~lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 233 EFIKAEMALFAEQAKEVDIIITT----ALIPGKPAPKLITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hHHHHHHHHHHhccCCCCEEEEC----CCCCcccCcchHHHHHHHhcCCCCEEEEE
Confidence 0 359999872 221 12235553 7777889999987643
No 265
>KOG1596|consensus
Probab=93.22 E-value=0.26 Score=50.10 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~Di 417 (626)
++..||-+||++|.-+. ....-.|...-|||||.++-+-.-+-+++... . ||--|-.|++.-.- -.-+|+
T Consensus 156 pGsKVLYLGAasGttVS---HvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-t--NiiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 156 PGSKVLYLGAASGTTVS---HVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-T--NIIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred CCceEEEeeccCCceee---hhhcccCCCceEEEEEecccchHHHHHHhhcc-C--CceeeeccCCCchheeeeeeeEEE
Confidence 67899999999998764 34444566679999999975432232222211 2 46666667775431 136888
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|++++... +...-+.-.++.|||+||-++-
T Consensus 230 IFaDvaqp----dq~RivaLNA~~FLk~gGhfvi 259 (317)
T KOG1596|consen 230 IFADVAQP----DQARIVALNAQYFLKNGGHFVI 259 (317)
T ss_pred EeccCCCc----hhhhhhhhhhhhhhccCCeEEE
Confidence 88865321 1111122356789999997663
No 266
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=92.96 E-value=0.45 Score=55.84 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=71.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhh---c-----CCccEEEEEeCCHHHH----HHH-----------HHHHH-----cC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKE---A-----NRKVRVYAVEKNMSAV----VGL-----------KYKKE-----EQ 393 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~---~-----g~~~~V~AVE~np~a~----~a~-----------~~~~~-----n~ 393 (626)
+..+|+|+|=|+|...+.++++.+. . ..+.+++++|+.|... .+. +.... .+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 4479999999999988777766521 1 1247999999976321 111 11100 12
Q ss_pred C------CCC-cEEEEEecccccC--CCCCccEEEeccccccCCCCCc-HHHHHHHHHhcccCcEEEec
Q psy17734 394 W------AQS-DVTIVSEDMRTWN--APEKADIMVSELLGSFGDNELS-PECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 394 ~------~~~-nV~vi~~D~~~~~--~p~k~DiIVSEllgsfg~~El~-pe~L~~~~r~LkpgGi~IP~ 452 (626)
+ +++ +++++.+|+++.- +..++|++.-+-+.---..|.. ++++..+.+.++|||+++..
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 1 111 3668889988742 2357999987554333334443 78999999999999998844
No 267
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.91 E-value=0.38 Score=51.89 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=73.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--CCCccEEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--PEKADIMV 419 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p~k~DiIV 419 (626)
..+|+|.=+|||.=+ ++.+...+. .+|++-|+||.|+ .++++++.|.-. +..+++.|...+-. ...||+|=
T Consensus 53 ~~~v~DalsatGiRg---IRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~~--~~~v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRG---IRYAVETGV-VKVVLNDISPKAVELIKENVRLNSGE--DAEVINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhH---hhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCcc--cceeecchHHHHHHhcCCCccEEe
Confidence 468999999999987 566666664 3999999999998 777888877333 47888888766532 37899996
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
-++.|+ ...++|++-+..+.+|++-
T Consensus 127 iDPFGS------PaPFlDaA~~s~~~~G~l~ 151 (380)
T COG1867 127 IDPFGS------PAPFLDAALRSVRRGGLLC 151 (380)
T ss_pred cCCCCC------CchHHHHHHHHhhcCCEEE
Confidence 666553 2348999999999998754
No 268
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=92.73 E-value=1.7 Score=44.87 Aligned_cols=165 Identities=9% Similarity=0.045 Sum_probs=96.7
Q ss_pred EeecCCCCCCHHHHHHHHHhCCccEEEecCCCcccccc--cccccccccCCCCcccccCCCCCcCccceEEEecCCcccc
Q psy17734 10 VGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARH--KDVDRYRVFGLPEAQVQSLSSICPQWLKLIVCDIQCKLKD 87 (626)
Q Consensus 10 ~g~~~~~~~~~~~~~~~~~~~~~df~~~pi~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~s~w~~~ 87 (626)
+|...+....+..+++.+.+.||+.|=+-+..|++-.. .... ....+........-.+....+-++ .
T Consensus 2 ~g~~~~~~~~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~gl~ls~h~p~~~-n 70 (273)
T smart00518 2 IGAHVSAAGGLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEE----------TAEKFKEALKENNIDVSVHAPYLI-N 70 (273)
T ss_pred eeEEEcccCcHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHH----------HHHHHHHHHHHcCCCEEEECCcee-c
Confidence 56666656678899999999999999998888865321 1000 000011100011111222333346 8
Q ss_pred cCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEE-cCCC------CChhhHHHHHHHHhccCCceEEEEEe-eccCCCccc
Q psy17734 88 FESKYVERRDHAKDLLHQELEYITYLGIPFIVV-SLDQ------PDFCNFARTLYAHSEKNMSYTAWIKV-PIRPVDTSM 159 (626)
Q Consensus 88 ~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~-~~~~------~~~~~~ar~~~~~~~~~~~~~~~i~~-p~~~~~~~~ 159 (626)
+-|+|+.+|+.+.+.|++-+..|+.+|.+.|.+ +... ....++++.++........+.+.+.- |-..
T Consensus 71 l~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~----- 145 (273)
T smart00518 71 LASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVVILLETTAGKG----- 145 (273)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcEEEEeccCCCC-----
Confidence 899999999999999999999999999999888 3211 11233444555544321223333221 1110
Q ss_pred cccCCCCCCccchHHHHHHHHHhcCCCCceEEEEEecC
Q psy17734 160 LRQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEING 197 (626)
Q Consensus 160 ~~~~~~~~~~~~~w~~W~~~r~~c~~~~~l~v~L~l~~ 197 (626)
..-..+.+.+..+-..|+..++++++|++.-
T Consensus 146 -------~~~~~~~~~~~~ll~~v~~~~~~g~~lD~gH 176 (273)
T smart00518 146 -------SQIGSTFEDLKEIIDLIKELDRIGVCIDTCH 176 (273)
T ss_pred -------CccCCCHHHHHHHHHhcCCCCCeEEEEEccc
Confidence 0011345556666666765478999999874
No 269
>PRK01060 endonuclease IV; Provisional
Probab=92.62 E-value=1.3 Score=45.93 Aligned_cols=121 Identities=14% Similarity=0.095 Sum_probs=76.8
Q ss_pred EEeecCCCCCCHHHHHHHHHhCCccEEEecCCCcccccc-cccccccccCCCCcccccCCCCCcCc-cceEEEecCCc-c
Q psy17734 9 SVGLEYPTCYNIQSQIESLAAECFDYAVLPLVHPRFARH-KDVDRYRVFGLPEAQVQSLSSICPQW-LKLIVCDIQCK-L 85 (626)
Q Consensus 9 ~~g~~~~~~~~~~~~~~~~~~~~~df~~~pi~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~v~~~s~w-~ 85 (626)
.+|...+.-.++.++++.+.+.|||.|=+-+.+|++-.. ..... . ...+.+-+.. ... ...++. -++| +
T Consensus 3 ~~g~~~~~~~~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~-~----~~~lk~~~~~--~gl~~~~~~~-h~~~~~ 74 (281)
T PRK01060 3 LIGAHVSAAGGLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEEL-N----IEAFKAACEK--YGISPEDILV-HAPYLI 74 (281)
T ss_pred eEEEeeecCCCHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHH-H----HHHHHHHHHH--cCCCCCceEE-ecceEe
Confidence 578877777789999999999999999887777753211 00000 0 0000000111 111 111222 2344 6
Q ss_pred cccCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEEcC-C---C----CChhhHHHHHHHHh
Q psy17734 86 KDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSL-D---Q----PDFCNFARTLYAHS 138 (626)
Q Consensus 86 ~~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~~~-~---~----~~~~~~ar~~~~~~ 138 (626)
.+-|+|+.+|+.+.+.+++.++.|+-+|.+.|++-+ . . ....++++.+++.+
T Consensus 75 -nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~ 134 (281)
T PRK01060 75 -NLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEAL 134 (281)
T ss_pred -cCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999988832 1 1 12234566666654
No 270
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.19 E-value=0.9 Score=48.48 Aligned_cols=93 Identities=13% Similarity=0.239 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEE---ecccccC-CCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVS---EDMRTWN-APEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~---~D~~~~~-~p~k~Di 417 (626)
++.+||..|| |.++.++++.++..|+ .+|++++.++......+. .|.. .++. .+..++. ....+|+
T Consensus 169 ~g~~VlV~G~--G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~---lGa~----~vi~~~~~~~~~~~~~~g~~D~ 238 (343)
T PRK09880 169 QGKRVFVSGV--GPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLARE---MGAD----KLVNPQNDDLDHYKAEKGYFDV 238 (343)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH---cCCc----EEecCCcccHHHHhccCCCCCE
Confidence 4678999886 6899888888887775 379999999755422222 2321 1221 1122211 1135898
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++- ..| .+..+..+.+.|+++|.++=-
T Consensus 239 vid-~~G-------~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 239 SFE-VSG-------HPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred EEE-CCC-------CHHHHHHHHHHhhcCCEEEEE
Confidence 874 233 244566677889999987743
No 271
>KOG4058|consensus
Probab=92.15 E-value=0.32 Score=45.98 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=58.4
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSEL 422 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEl 422 (626)
.+.+|+|.|.|-++..+++.+. ..-+++|.||-.+ ..+-..-+.+.+.+ +.+...|+-.+++. .+.-+|-
T Consensus 74 GklvDlGSGDGRiVlaaar~g~-----~~a~GvELNpwLVaysrl~a~R~g~~k~-trf~RkdlwK~dl~-dy~~vvi-- 144 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGL-----RPAVGVELNPWLVAYSRLHAWRAGCAKS-TRFRRKDLWKVDLR-DYRNVVI-- 144 (199)
T ss_pred CcEEeccCCCceeehhhhhhCC-----CcCCceeccHHHHHHHHHHHHHHhcccc-hhhhhhhhhhcccc-ccceEEE--
Confidence 4689999999999864444432 4788999999765 33333345777776 88888887666653 2333322
Q ss_pred ccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 423 LGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 423 lgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
||-...|+..-+....-+..+..++-+
T Consensus 145 ---Fgaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 145 ---FGAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred ---eehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 332222444444444345455555544
No 272
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=91.79 E-value=0.52 Score=48.47 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=45.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHH-HHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVG-LKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a-~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
..+|+|||||.=||+.-.+ .. ..+..++|+|++..++.. .+....-++. .++...|...-..++..|+..-
T Consensus 106 p~sVlDigCGlNPlalp~~--~~--~~~a~Y~a~DID~~~ve~l~~~l~~l~~~---~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWM--PE--APGATYIAYDIDSQLVEFLNAFLAVLGVP---HDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp -SEEEEET-TTCHHHHHTT--TS--STT-EEEEEESBHHHHHHHHHHHHHTT-C---EEEEEE-TTTSHTTSEESEEEE
T ss_pred CchhhhhhccCCceehhhc--cc--CCCcEEEEEeCCHHHHHHHHHHHHhhCCC---cceeEeeeeccCCCCCcchhhH
Confidence 5689999999999985433 22 123599999999987744 4444556663 6676677665555577888753
No 273
>KOG2798|consensus
Probab=91.65 E-value=0.86 Score=48.22 Aligned_cols=35 Identities=29% Similarity=0.300 Sum_probs=25.4
Q ss_pred CccEEEeccccccCC-CCCcHHHHHHHHHhcccCcEEEe
Q psy17734 414 KADIMVSELLGSFGD-NELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 414 k~DiIVSEllgsfg~-~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+|+||.-+ |-| .+.+-+.|+.+.+.|||||+-|-
T Consensus 259 ~~d~VvTcf---FIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 259 SYDVVVTCF---FIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred ccceEEEEE---EeechHHHHHHHHHHHHhccCCcEEEe
Confidence 478887753 333 33467789999999999999773
No 274
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=91.52 E-value=0.66 Score=49.28 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA------PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~------p~k 414 (626)
++.+++|.=+|.|.-+..++.+.. . .+|+|+|.++.|. .+.+.+. .+.++ +++++++..++.. ..+
T Consensus 20 ~ggiyVD~TlG~GGHS~~iL~~l~---~-g~vigiD~D~~Al~~ak~~L~--~~~~R-~~~i~~nF~~l~~~l~~~~~~~ 92 (305)
T TIGR00006 20 PDGIYIDCTLGFGGHSKAILEQLG---T-GRLIGIDRDPQAIAFAKERLS--DFEGR-VVLIHDNFANFFEHLDELLVTK 92 (305)
T ss_pred CCCEEEEeCCCChHHHHHHHHhCC---C-CEEEEEcCCHHHHHHHHHHHh--hcCCc-EEEEeCCHHHHHHHHHhcCCCc
Confidence 456899999999999987665542 1 4999999999988 4444443 34566 9999999887631 146
Q ss_pred ccEEEecc
Q psy17734 415 ADIMVSEL 422 (626)
Q Consensus 415 ~DiIVSEl 422 (626)
+|.|+.++
T Consensus 93 vDgIl~DL 100 (305)
T TIGR00006 93 IDGILVDL 100 (305)
T ss_pred ccEEEEec
Confidence 89998865
No 275
>KOG1122|consensus
Probab=91.25 E-value=1.2 Score=48.94 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=76.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---CCCCc
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---APEKA 415 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---~p~k~ 415 (626)
..++.+|||..|-.|.=+...+..-+.. ..|||.|.|.+-+ ....++.+-|.. |-.+++.|+++++ .+..|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~---G~I~AnD~n~~r~~~l~~n~~rlGv~--ntiv~n~D~~ef~~~~~~~~f 313 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNT---GVIFANDSNENRLKSLKANLHRLGVT--NTIVSNYDGREFPEKEFPGSF 313 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCC---ceEEecccchHHHHHHHHHHHHhCCC--ceEEEccCcccccccccCccc
Confidence 4578899999999987765433333333 4999999998766 445566667765 5778888998764 33479
Q ss_pred cEEEecccccc--C--------CCCC----------cHHHHHHHHHhcccCcEEEeccceeeE
Q psy17734 416 DIMVSELLGSF--G--------DNEL----------SPECLYAAQKYLKEDGISIPYNYTSYI 458 (626)
Q Consensus 416 DiIVSEllgsf--g--------~~El----------~pe~L~~~~r~LkpgGi~IP~~~t~y~ 458 (626)
|-|+-+-.-|. . .++. ..+.|..+-..+++||+++=+.+++-.
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence 99876543222 1 1221 123566667788999999987776543
No 276
>KOG1253|consensus
Probab=90.74 E-value=0.35 Score=53.83 Aligned_cols=102 Identities=18% Similarity=0.083 Sum_probs=77.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC--CC---CCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--AP---EKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p---~k~ 415 (626)
++.+|||.=+++|.-+. +-+++.+.-.+|+|-|.+++++ ..+++++.|+-.+. |+..++|+..+- .+ ..|
T Consensus 109 ~~l~vLealsAtGlrsl---Rya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~i-ve~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSL---RYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDI-VEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred CcchHHHHhhhhhHHHH---HHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhh-cccccchHHHHHHhcccccccc
Confidence 56789999999998875 4444433225999999999998 57788888988888 999999987653 22 789
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEecc
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
|+|=-++.|+ ...+||++-+.++.||++.-.+
T Consensus 185 DvIDLDPyGs------~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLDPYGS------PSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecCCCCC------ccHHHHHHHHHhhcCCEEEEEe
Confidence 9996555442 2458999999999999976443
No 277
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=90.53 E-value=0.33 Score=43.51 Aligned_cols=60 Identities=17% Similarity=0.202 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC
Q psy17734 314 KDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN 379 (626)
Q Consensus 314 ~D~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n 379 (626)
.||.|.-.-.-||...+..+..+.....+.....|+|||.|.|+-.+...+ .+=+|+|.-
T Consensus 30 TdP~K~VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EG------y~G~GiD~R 89 (112)
T PF07757_consen 30 TDPQKHVFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEG------YPGWGIDAR 89 (112)
T ss_pred CCchhhHHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCC------CCccccccc
Confidence 466665555566777666554433333344568999999999996544333 244566654
No 278
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=90.52 E-value=0.63 Score=47.52 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=41.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HH---HHHHHHcCCC-----CCcEEEEEecccccC--CC
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VG---LKYKKEEQWA-----QSDVTIVSEDMRTWN--AP 412 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a---~~~~~~n~~~-----~~nV~vi~~D~~~~~--~p 412 (626)
.+|||.-+|-|.=+..++ . .| .+|+++|.||... +. ++........ .+ ++++++|..++- ..
T Consensus 77 ~~VLDaTaGLG~Da~vlA---~-~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~r-i~l~~~d~~~~L~~~~ 149 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLA---S-LG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRR-IQLIHGDALEYLRQPD 149 (234)
T ss_dssp --EEETT-TTSHHHHHHH---H-HT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHH-EEEEES-CCCHCCCHS
T ss_pred CEEEECCCcchHHHHHHH---c-cC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhC-CEEEcCCHHHHHhhcC
Confidence 489999999998875332 2 35 3899999999544 22 2222222221 34 999999999863 24
Q ss_pred CCccEEEecccc
Q psy17734 413 EKADIMVSELLG 424 (626)
Q Consensus 413 ~k~DiIVSEllg 424 (626)
..+|+|..++|-
T Consensus 150 ~s~DVVY~DPMF 161 (234)
T PF04445_consen 150 NSFDVVYFDPMF 161 (234)
T ss_dssp S--SEEEE--S-
T ss_pred CCCCEEEECCCC
Confidence 789999999883
No 279
>KOG0024|consensus
Probab=90.39 E-value=2.5 Score=45.08 Aligned_cols=91 Identities=18% Similarity=0.125 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---------- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---------- 410 (626)
.+.+||.+|||. .++.++.+|+..|+ .+|+.+|.+++.+ .|++ + |. . +..-.......+
T Consensus 169 ~Gs~vLV~GAGP--IGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~---Ga--~-~~~~~~~~~~~~~~~~~v~~~~ 238 (354)
T KOG0024|consen 169 KGSKVLVLGAGP--IGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-F---GA--T-VTDPSSHKSSPQELAELVEKAL 238 (354)
T ss_pred cCCeEEEECCcH--HHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-h---CC--e-EEeeccccccHHHHHHHHHhhc
Confidence 678999999984 44444566666777 5999999998776 4444 2 22 2 222222211111
Q ss_pred CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 411 APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 411 ~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
....+|..+. . -...-+++++-..++.+|.++
T Consensus 239 g~~~~d~~~d----C----sG~~~~~~aai~a~r~gGt~v 270 (354)
T KOG0024|consen 239 GKKQPDVTFD----C----SGAEVTIRAAIKATRSGGTVV 270 (354)
T ss_pred cccCCCeEEE----c----cCchHHHHHHHHHhccCCEEE
Confidence 1134777764 1 123457888888899999855
No 280
>KOG1099|consensus
Probab=90.38 E-value=0.13 Score=51.89 Aligned_cols=116 Identities=20% Similarity=0.227 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhh----c-CCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC------
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKE----A-NRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA------ 411 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~----~-g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~------ 411 (626)
-++|+|+.|-.|.++.-+-+-.-. . .++.+|+|||.-++|-+ . .|.-+++|++....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----------~--GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----------E--GVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----------C--ceEEeecccCCHhHHHHHHH
Confidence 467999999999998754433221 1 12236999999886542 2 38889999987642
Q ss_pred ---CCCccEEEeccc-cccCCCCC---c-HHHHH----HHHHhcccCcEEEeccceeeEEeccChHhHHHHhhhc
Q psy17734 412 ---PEKADIMVSELL-GSFGDNEL---S-PECLY----AAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSM 474 (626)
Q Consensus 412 ---p~k~DiIVSEll-gsfg~~El---~-pe~L~----~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~~~~~~ 474 (626)
.+++|+|||+-. +.-|.++. + .++|- -..+.|||||.++---. ..=..+.||..++.+.
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif----Rg~~tslLysql~~ff 180 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF----RGRDTSLLYSQLRKFF 180 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh----ccCchHHHHHHHHHHh
Confidence 279999999642 33344443 2 22222 23467999999885422 2233445666665543
No 281
>KOG1269|consensus
Probab=89.88 E-value=0.4 Score=52.16 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
++..++|+|||-|..+.....-. + .++++++.|+... .+..........++ -.++.+|.-+-+.+ ..+|.+-
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~---~--~~~~Gl~~n~~e~~~~~~~~~~~~l~~k-~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFK---K--AGVVGLDNNAYEAFRANELAKKAYLDNK-CNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred ccccccccCcCcCchhHHHHHhc---c--CCccCCCcCHHHHHHHHHHHHHHHhhhh-cceehhhhhcCCCCccccCcEE
Confidence 45578999999999985422221 2 4899999998544 33333333344444 33366666555443 5788874
Q ss_pred e-ccccccCCCCCc-HHHHHHHHHhcccCcEEEec
Q psy17734 420 S-ELLGSFGDNELS-PECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 S-Ellgsfg~~El~-pe~L~~~~r~LkpgGi~IP~ 452 (626)
+ |..- +... ..++..+.|.+||||..|=.
T Consensus 184 ~ld~~~----~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 184 FLEVVC----HAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EEeecc----cCCcHHHHHHHHhcccCCCceEEeH
Confidence 4 3222 2222 33677888999999998744
No 282
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=89.34 E-value=0.81 Score=51.28 Aligned_cols=99 Identities=15% Similarity=0.171 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEEe
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMVS 420 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIVS 420 (626)
--.|||..||.|.++. |.. . ..|+..-.-|... -++..+-..|+ |-+.+.=.+.+. .|..+|+|=+
T Consensus 366 iRNVMDMnAg~GGFAA----AL~--~--~~VWVMNVVP~~~~ntL~vIydRGL----IG~yhDWCE~fsTYPRTYDLlHA 433 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAA----ALI--D--DPVWVMNVVPVSGPNTLPVIYDRGL----IGVYHDWCEAFSTYPRTYDLLHA 433 (506)
T ss_pred eeeeeeecccccHHHH----Hhc--c--CCceEEEecccCCCCcchhhhhccc----chhccchhhccCCCCcchhheeh
Confidence 4579999999999962 221 2 2455544444321 34444444555 333443333343 3578999977
Q ss_pred ccccccCCC-CCcHHHHHHHHHhcccCcEEEecc
Q psy17734 421 ELLGSFGDN-ELSPECLYAAQKYLKEDGISIPYN 453 (626)
Q Consensus 421 Ellgsfg~~-El~pe~L~~~~r~LkpgGi~IP~~ 453 (626)
.-+-+...+ -.+..+|-+.+|.|+|+|.+|-+.
T Consensus 434 ~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 434 DGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 544333222 225678889999999999988553
No 283
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=89.26 E-value=0.68 Score=45.88 Aligned_cols=106 Identities=20% Similarity=0.156 Sum_probs=68.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH------HHHH-HcCCCCCcEEEEEecccccCCCC
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL------KYKK-EEQWAQSDVTIVSEDMRTWNAPE 413 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~------~~~~-~n~~~~~nV~vi~~D~~~~~~p~ 413 (626)
.++.+|+|+=.|.|-++..+..+ .|.+.+||+.-.++....+. ..+. +.... |++++-.+...+..++
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~---vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a--N~e~~~~~~~A~~~pq 121 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPA---VGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA--NVEVIGKPLVALGAPQ 121 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchh---cCCceeEEEecchhhcccccchhhhhhhhhhhhhhh--hhhhhCCcccccCCCC
Confidence 47889999999999998643333 45667999998776533211 1111 12333 6888888888877788
Q ss_pred CccEEEeccccccCCCCCc-----HHHHHHHHHhcccCcEEEe
Q psy17734 414 KADIMVSELLGSFGDNELS-----PECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~-----pe~L~~~~r~LkpgGi~IP 451 (626)
+.|++......+-+.+..+ ..+..++.+.|||||++.-
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V 164 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLV 164 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEE
Confidence 8898866443322222222 2345566788999998653
No 284
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=89.12 E-value=0.73 Score=47.36 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcC----CccEEEEEeCCHHHH
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEAN----RKVRVYAVEKNMSAV 383 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g----~~~~V~AVE~np~a~ 383 (626)
..+|+++|+|+|.|+.-.+++.+... .+.+++-||.||...
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~ 63 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR 63 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH
Confidence 36899999999999988888776442 136999999998665
No 285
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.04 E-value=17 Score=40.60 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
.+++|+.+|+| .++..++..++..|. +|+.+|.++... .+.. ..+ .++. ++.+.- +.+|++|.-
T Consensus 211 ~Gk~VlViG~G--~IG~~vA~~lr~~Ga--~ViV~d~dp~ra--~~A~-~~G-----~~v~--~l~eal--~~aDVVI~a 274 (425)
T PRK05476 211 AGKVVVVAGYG--DVGKGCAQRLRGLGA--RVIVTEVDPICA--LQAA-MDG-----FRVM--TMEEAA--ELGDIFVTA 274 (425)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCC--EEEEEcCCchhh--HHHH-hcC-----CEec--CHHHHH--hCCCEEEEC
Confidence 57899999987 477666777776774 899999997432 1111 122 2222 333332 468999872
Q ss_pred cccccCCCCCcHHHHH-HHHHhcccCcEEEe
Q psy17734 422 LLGSFGDNELSPECLY-AAQKYLKEDGISIP 451 (626)
Q Consensus 422 llgsfg~~El~pe~L~-~~~r~LkpgGi~IP 451 (626)
. ..+.+++ .....+|+|++++=
T Consensus 275 T--------G~~~vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 275 T--------GNKDVITAEHMEAMKDGAILAN 297 (425)
T ss_pred C--------CCHHHHHHHHHhcCCCCCEEEE
Confidence 1 2244665 35567899998873
No 286
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=88.74 E-value=0.83 Score=47.75 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=46.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---CCCccEEEec
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADIMVSE 421 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~DiIVSE 421 (626)
+|+|+.||.|.++..+.+ +|. ..|+|+|.++.|..+.+. | +. -.++.+|++++.. ..++|+++.-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~----~G~-~~v~a~e~~~~a~~~~~~---N-~~---~~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEK----AGF-EIVAANEIDKSAAETYEA---N-FP---NKLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHH----cCC-EEEEEEeCCHHHHHHHHH---h-CC---CCCccCccccCchhhcCCCCCEEEeC
Confidence 589999999999754333 344 378999999988855443 1 12 1267788888763 3579999875
Q ss_pred c
Q psy17734 422 L 422 (626)
Q Consensus 422 l 422 (626)
.
T Consensus 70 p 70 (275)
T cd00315 70 F 70 (275)
T ss_pred C
Confidence 4
No 287
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=88.70 E-value=10 Score=38.98 Aligned_cols=95 Identities=19% Similarity=0.147 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~Di 417 (626)
.++.||.+|=+- |+..|+.. .+...+|+.+|+++..+ ...+..++.|+ +|+.++.|.|+--+ -++||+
T Consensus 44 ~gk~il~lGDDD--LtSlA~al---~~~~~~I~VvDiDeRll~fI~~~a~~~gl---~i~~~~~DlR~~LP~~~~~~fD~ 115 (243)
T PF01861_consen 44 EGKRILFLGDDD--LTSLALAL---TGLPKRITVVDIDERLLDFINRVAEEEGL---PIEAVHYDLRDPLPEELRGKFDV 115 (243)
T ss_dssp TT-EEEEES-TT---HHHHHHH---HT--SEEEEE-S-HHHHHHHHHHHHHHT-----EEEE---TTS---TTTSS-BSE
T ss_pred cCCEEEEEcCCc--HHHHHHHh---hCCCCeEEEEEcCHHHHHHHHHHHHHcCC---ceEEEEecccccCCHHHhcCCCE
Confidence 578999999554 44322222 22235999999999877 44445556777 49999999998432 279999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCc
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDG 447 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgG 447 (626)
+++++.-.. |++.-++...-..||..|
T Consensus 116 f~TDPPyT~---~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 116 FFTDPPYTP---EGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EEE---SSH---HHHHHHHHHHHHTB-STT
T ss_pred EEeCCCCCH---HHHHHHHHHHHHHhCCCC
Confidence 999886322 333345554455677655
No 288
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.62 E-value=1.7 Score=44.93 Aligned_cols=94 Identities=19% Similarity=0.128 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec----ccccCCCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED----MRTWNAPEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D----~~~~~~p~k~Di 417 (626)
++.+||..|+ |+++.++++.++..|. .+|++++.++.-.... +..+.. ..+-..+ +.+......+|+
T Consensus 120 ~g~~VlV~G~--G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a---~~~Ga~---~~i~~~~~~~~~~~~~~~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGA--GMLGLTAAAAAAAAGA-ARVVAADPSPDRRELA---LSFGAT---ALAEPEVLAERQGGLQNGRGVDV 190 (280)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHH---HHcCCc---EecCchhhHHHHHHHhCCCCCCE
Confidence 5678999976 5788888888887785 2599999887543221 122321 1111111 111112245898
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
++- ..| .+..+..+.+.|+++|.++--
T Consensus 191 vid-~~G-------~~~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 191 ALE-FSG-------ATAAVRACLESLDVGGTAVLA 217 (280)
T ss_pred EEE-CCC-------ChHHHHHHHHHhcCCCEEEEe
Confidence 874 222 245677777889999987743
No 289
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=88.49 E-value=9.6 Score=39.43 Aligned_cols=162 Identities=12% Similarity=0.135 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHhCCccEEEecCCCcccccccccccccccCCCCcccccCCCCCcCccceEEEecCC-cccccCCccHHHH
Q psy17734 18 YNIQSQIESLAAECFDYAVLPLVHPRFARHKDVDRYRVFGLPEAQVQSLSSICPQWLKLIVCDIQC-KLKDFESKYVERR 96 (626)
Q Consensus 18 ~~~~~~~~~~~~~~~df~~~pi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~s~-w~~~~ds~~~~~~ 96 (626)
.++.++++.+.+.|||+|=+++.++......... ......+...+.+-....+....+ ++ .+-++++..|
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~r 80 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLK--------KERAEKFKAIAEEGPSICLSVHAPYLI-NLASPDKEKR 80 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCC--------HHHHHHHHHHHHHcCCCcEEEEcCcee-ccCCCCHHHH
Confidence 5789999999999999998888765321100000 000000111111121112222233 45 7778999999
Q ss_pred HHHHHHHHHHHhhhhhhCCCeEEEcC-CCC------ChhhHHHHHHHHhccCCceEEEEEeeccCCCccccccCCCCCCc
Q psy17734 97 DHAKDLLHQELEYITYLGIPFIVVSL-DQP------DFCNFARTLYAHSEKNMSYTAWIKVPIRPVDTSMLRQQEEEPSS 169 (626)
Q Consensus 97 ~~s~~~l~~e~~~a~~~g~~~~i~~~-~~~------~~~~~ar~~~~~~~~~~~~~~~i~~p~~~~~~~~~~~~~~~~~~ 169 (626)
..+.+.+++=++.|+.+|.+.+++.+ ... ....+.+.+++.........+.+.|--.... ...-.
T Consensus 81 ~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~--------~~~~~ 152 (279)
T cd00019 81 EKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQ--------GNEIG 152 (279)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC--------CCCCC
Confidence 99999999999999999999988843 211 1123455555554433222233333221110 00001
Q ss_pred cchHHHHHHHHHhcCCCCceEEEEEecC
Q psy17734 170 QDTWRWWNMFRSVTNYHSKFELALEING 197 (626)
Q Consensus 170 ~~~w~~W~~~r~~c~~~~~l~v~L~l~~ 197 (626)
.+..+++..+.. |+-++++++.+++..
T Consensus 153 ~t~~~~~~li~~-v~~~~~~g~~lD~~h 179 (279)
T cd00019 153 SSFEELKEIIDL-IKEKPRVGVCIDTCH 179 (279)
T ss_pred CCHHHHHHHHHh-cCCCCCeEEEEEhhh
Confidence 123444444444 434678999999874
No 290
>KOG2352|consensus
Probab=88.17 E-value=4.3 Score=45.46 Aligned_cols=100 Identities=17% Similarity=0.258 Sum_probs=67.5
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEecc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSEL 422 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVSEl 422 (626)
.+++.+|||--.|...... .|- ..|+.+|.|+-++.+.+...... .. -.++...|+....++ +.||+++-.-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~----~G~-~dI~~iD~S~V~V~~m~~~~~~~-~~-~~~~~~~d~~~l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYK----NGF-EDITNIDSSSVVVAAMQVRNAKE-RP-EMQMVEMDMDQLVFEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHh----cCC-CCceeccccHHHHHHHHhccccC-Cc-ceEEEEecchhccCCCcceeEEEecC
Confidence 4899999999988754322 343 48999999997775544333211 12 288899999998875 7899998753
Q ss_pred -ccccCCCCCc-------HHHHHHHHHhcccCcEEE
Q psy17734 423 -LGSFGDNELS-------PECLYAAQKYLKEDGISI 450 (626)
Q Consensus 423 -lgsfg~~El~-------pe~L~~~~r~LkpgGi~I 450 (626)
++.+...|.. ...++.+.|.|++||+.+
T Consensus 123 tlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~ 158 (482)
T KOG2352|consen 123 TLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYI 158 (482)
T ss_pred ccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEE
Confidence 3333322221 235677889999999854
No 291
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.13 E-value=2.7 Score=44.99 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeC---CHHHHHHHHHHHHcCCCCCcEEEEEe---cccccCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEK---NMSAVVGLKYKKEEQWAQSDVTIVSE---DMRTWNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~---np~a~~a~~~~~~n~~~~~nV~vi~~---D~~~~~~p~k~ 415 (626)
++.+||..|+ |.++..+++.++..|+ +|++++. ++.-... .++.|. +.+.. +..+......+
T Consensus 172 ~g~~vlI~G~--G~vG~~a~q~ak~~G~--~vi~~~~~~~~~~~~~~---~~~~Ga-----~~v~~~~~~~~~~~~~~~~ 239 (355)
T cd08230 172 NPRRALVLGA--GPIGLLAALLLRLRGF--EVYVLNRRDPPDPKADI---VEELGA-----TYVNSSKTPVAEVKLVGEF 239 (355)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC--eEEEEecCCCCHHHHHH---HHHcCC-----EEecCCccchhhhhhcCCC
Confidence 4578999986 6788888888887775 8999987 4432211 122222 22211 11111112468
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|+++- ..| .+..+....+.|+++|.++-
T Consensus 240 d~vid-~~g-------~~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 240 DLIIE-ATG-------VPPLAFEALPALAPNGVVIL 267 (355)
T ss_pred CEEEE-CcC-------CHHHHHHHHHHccCCcEEEE
Confidence 88875 222 24467777788999998764
No 292
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=87.40 E-value=4.6 Score=43.12 Aligned_cols=90 Identities=14% Similarity=0.086 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhh-cCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKE-ANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~-~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
++.+||.+|| |+++.++++.+++ .|. .+|+++|.++.-. .+++ .+ . +..+. ++.....+|+++
T Consensus 163 ~g~~VlV~G~--G~vGl~~~~~a~~~~g~-~~vi~~~~~~~k~~~a~~----~~---~-~~~~~----~~~~~~g~d~vi 227 (341)
T cd08237 163 DRNVIGVWGD--GNLGYITALLLKQIYPE-SKLVVFGKHQEKLDLFSF----AD---E-TYLID----DIPEDLAVDHAF 227 (341)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHhcCC-CcEEEEeCcHhHHHHHhh----cC---c-eeehh----hhhhccCCcEEE
Confidence 4678999997 6788777776664 343 4899999987433 2221 11 1 21111 111112489887
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|..| ....+..++.+.+.|+++|.++-
T Consensus 228 -D~~G----~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 228 -ECVG----GRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred -ECCC----CCccHHHHHHHHHhCcCCcEEEE
Confidence 3333 12235567777789999999873
No 293
>KOG2920|consensus
Probab=86.61 E-value=0.66 Score=48.42 Aligned_cols=36 Identities=14% Similarity=0.057 Sum_probs=26.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHH
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMS 381 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~ 381 (626)
+.+++|||+|||.|..+..+..-+. +.|.+-|.|..
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~-----~~~~fqD~na~ 150 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA-----VSVHFQDFNAE 150 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc-----ceeeeEecchh
Confidence 4678999999999999976554442 47777777753
No 294
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=86.34 E-value=6.4 Score=41.83 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++.+||..|+ |.++.++++.++..|+ +|++++.++.-... .++.|.. . ++.. .+. ..+.+|+++-
T Consensus 165 ~g~~VlV~G~--g~iG~~a~~~a~~~G~--~vi~~~~~~~~~~~---a~~~Ga~---~-vi~~--~~~-~~~~~d~~i~- 229 (329)
T TIGR02822 165 PGGRLGLYGF--GGSAHLTAQVALAQGA--TVHVMTRGAAARRL---ALALGAA---S-AGGA--YDT-PPEPLDAAIL- 229 (329)
T ss_pred CCCEEEEEcC--CHHHHHHHHHHHHCCC--eEEEEeCChHHHHH---HHHhCCc---e-eccc--ccc-CcccceEEEE-
Confidence 5678999997 5678888888887774 79999998754322 2223322 1 1211 111 1245786542
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
. ...+..+....+.|+++|.++-
T Consensus 230 ~-------~~~~~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 230 F-------APAGGLVPPALEALDRGGVLAV 252 (329)
T ss_pred C-------CCcHHHHHHHHHhhCCCcEEEE
Confidence 1 1223467777788999999764
No 295
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=85.78 E-value=4.5 Score=44.94 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
.+++|+++|+|. ++..++++++..|+ +|+++|.++... .+. ..|. +++ ++++.- ..+|++|.
T Consensus 201 ~GktVvViG~G~--IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~----~~G~-----~~~--~~~e~v--~~aDVVI~ 263 (413)
T cd00401 201 AGKVAVVAGYGD--VGKGCAQSLRGQGA--RVIVTEVDPICALQAA----MEGY-----EVM--TMEEAV--KEGDIFVT 263 (413)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCC--EEEEEECChhhHHHHH----hcCC-----EEc--cHHHHH--cCCCEEEE
Confidence 578999999984 66666777777775 899999997533 222 2232 222 122211 45899986
Q ss_pred ccccccCCCCCcHHHHHHH-HHhcccCcEEEecc
Q psy17734 421 ELLGSFGDNELSPECLYAA-QKYLKEDGISIPYN 453 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~~~-~r~LkpgGi~IP~~ 453 (626)
- . +.+.++... .+.+|+||+++--.
T Consensus 264 a-t-------G~~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 264 T-T-------GNKDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred C-C-------CCHHHHHHHHHhcCCCCcEEEEeC
Confidence 2 1 234566554 67899999987443
No 296
>KOG3201|consensus
Probab=85.74 E-value=0.27 Score=47.19 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcCCC--CCcEEEEEecccc---cCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWA--QSDVTIVSEDMRT---WNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~~~--~~nV~vi~~D~~~---~~~p~k~ 415 (626)
.+..||++|+|.-.|+- +..|.++. ...|.-.|-|+.++.-. +.+..|... .+ +.++.-+... ......|
T Consensus 29 rg~~ilelgggft~lag--lmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~ts-c~vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAG--LMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTS-CCVLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred hHHHHHHhcCchhhhhh--hheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccce-ehhhHHHHhhhHHHHhhCcc
Confidence 34679999999533332 33333333 25888999999887444 444444221 22 3333222111 1122589
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGI 448 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi 448 (626)
|+|++- +.....|.-....+.+.++|+|.|.
T Consensus 105 DiIlaA--DClFfdE~h~sLvdtIk~lL~p~g~ 135 (201)
T KOG3201|consen 105 DIILAA--DCLFFDEHHESLVDTIKSLLRPSGR 135 (201)
T ss_pred cEEEec--cchhHHHHHHHHHHHHHHHhCcccc
Confidence 999883 1211234345577888999999996
No 297
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=85.70 E-value=1.5 Score=47.15 Aligned_cols=41 Identities=22% Similarity=0.171 Sum_probs=26.4
Q ss_pred CCCCCCEEEEEcCCCchHHHHHHHHHhhcC-CccEEEEEeCCHHHH
Q psy17734 339 ADTVVTTIMVVGAGRGPLVTASLNAAKEAN-RKVRVYAVEKNMSAV 383 (626)
Q Consensus 339 ~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g-~~~~V~AVE~np~a~ 383 (626)
+++..+.+||+|+|.|.-.. |....- .-..++-+|.||...
T Consensus 110 ~dfapqsiLDvG~GPgtgl~----A~n~i~Pdl~sa~ile~sp~lr 151 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLW----ALNDIWPDLKSAVILEASPALR 151 (484)
T ss_pred CCcCcchhhccCCCCchhhh----hhcccCCCchhhhhhccCHHHH
Confidence 56778899999999887542 222110 112678888888554
No 298
>KOG2793|consensus
Probab=85.46 E-value=4.9 Score=41.51 Aligned_cols=96 Identities=18% Similarity=0.110 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHH--H-HH--HHHHHHcCCCCCcEEEEEeccccc-----CCC
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSA--V-VG--LKYKKEEQWAQSDVTIVSEDMRTW-----NAP 412 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a--~-~a--~~~~~~n~~~~~nV~vi~~D~~~~-----~~p 412 (626)
...||++|+|+|.-+. .|+...+ ..|.--|.-... . .. ..+.+.+..++. |.+..-+=.+- ..+
T Consensus 87 ~~~vlELGsGtglvG~---~aa~~~~--~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~-v~v~~L~Wg~~~~~~~~~~ 160 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGI---LAALLLG--AEVVLTDLPKVVENLKFNRDKNNIALNQLGGS-VIVAILVWGNALDVSFRLP 160 (248)
T ss_pred ceeEEEecCCccHHHH---HHHHHhc--ceeccCCchhhHHHHHHhhhhhhhhhhhcCCc-eeEEEEecCCcccHhhccC
Confidence 4679999999996663 3444334 355555543211 1 11 112223444444 55443322211 112
Q ss_pred CCccEEEeccccccCCCCCcHH-HHHHHHHhcccCc
Q psy17734 413 EKADIMVSELLGSFGDNELSPE-CLYAAQKYLKEDG 447 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe-~L~~~~r~LkpgG 447 (626)
..+|+|++-- .+. .+.+++ .+.....+|..+|
T Consensus 161 ~~~DlilasD--vvy-~~~~~e~Lv~tla~ll~~~~ 193 (248)
T KOG2793|consen 161 NPFDLILASD--VVY-EEESFEGLVKTLAFLLAKDG 193 (248)
T ss_pred CcccEEEEee--eee-cCCcchhHHHHHHHHHhcCC
Confidence 2289988722 232 233444 4455566778888
No 299
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=84.60 E-value=14 Score=40.92 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
.+++|+++|+|. ++..+++.++..|+ +|+++|.+|... .+. ...|. ++. ++++. . .+.|++|+-
T Consensus 194 ~Gk~VvViG~G~--IG~~vA~~ak~~Ga--~ViV~d~dp~r~--~~A-~~~G~-----~v~--~leea-l-~~aDVVIta 257 (406)
T TIGR00936 194 AGKTVVVAGYGW--CGKGIAMRARGMGA--RVIVTEVDPIRA--LEA-AMDGF-----RVM--TMEEA-A-KIGDIFITA 257 (406)
T ss_pred CcCEEEEECCCH--HHHHHHHHHhhCcC--EEEEEeCChhhH--HHH-HhcCC-----EeC--CHHHH-H-hcCCEEEEC
Confidence 578999999875 66666777776774 899999998432 111 12232 222 23332 1 468999872
Q ss_pred cccccCCCCCcHHHHHH-HHHhcccCcEEEec
Q psy17734 422 LLGSFGDNELSPECLYA-AQKYLKEDGISIPY 452 (626)
Q Consensus 422 llgsfg~~El~pe~L~~-~~r~LkpgGi~IP~ 452 (626)
. ..+..+.. ....+|+|++++-.
T Consensus 258 -T-------G~~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 258 -T-------GNKDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred -C-------CCHHHHHHHHHhcCCCCcEEEEE
Confidence 1 12445553 45678999988754
No 300
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=84.44 E-value=4.5 Score=43.35 Aligned_cols=93 Identities=18% Similarity=0.165 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc-------cCCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT-------WNAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~-------~~~p~k 414 (626)
++.+||..|+ |+++.++++.++..|+ .+|++++.++.-....+ ..+- + .++...-.+ ......
T Consensus 176 ~g~~VlV~G~--g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~---~~Ga-~---~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 176 RGDSVAVIGC--GGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWAR---EFGA-T---HTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH---HcCC-c---eEEcCCCcCHHHHHHHHhCCCC
Confidence 5678999985 6888888888887785 26999998875432222 2232 1 222211111 111236
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+|+++- ..| .+..+....+.++++|.++--
T Consensus 246 ~d~vid-~~g-------~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 246 ADVVID-AVG-------RPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCEEEE-CCC-------CHHHHHHHHHHhccCCEEEEE
Confidence 898874 332 134556666789999987743
No 301
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=84.18 E-value=3.2 Score=43.88 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=55.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec---ccccCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED---MRTWNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D---~~~~~~p~k~DiI 418 (626)
++.+||..|+ |.++.++++.++..|++ +|++++.++.-....+ ..+.... +..-..+ +.+......+|++
T Consensus 163 ~g~~vlV~G~--G~vG~~~~~~ak~~G~~-~vi~~~~~~~~~~~~~---~~ga~~~-i~~~~~~~~~~~~~~~~~~~d~v 235 (339)
T cd08239 163 GRDTVLVVGA--GPVGLGALMLARALGAE-DVIGVDPSPERLELAK---ALGADFV-INSGQDDVQEIRELTSGAGADVA 235 (339)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHH---HhCCCEE-EcCCcchHHHHHHHhCCCCCCEE
Confidence 4678999975 67888888888888862 5999998875432222 2232111 1111111 1112122469998
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+- ..| .+..+..+.+.|+++|.++
T Consensus 236 id-~~g-------~~~~~~~~~~~l~~~G~~v 259 (339)
T cd08239 236 IE-CSG-------NTAARRLALEAVRPWGRLV 259 (339)
T ss_pred EE-CCC-------CHHHHHHHHHHhhcCCEEE
Confidence 74 111 2345556667899999877
No 302
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=84.14 E-value=8 Score=40.15 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCC-
Q psy17734 316 PIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQW- 394 (626)
Q Consensus 316 ~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~- 394 (626)
..|...+.+++.+++.+ +...|+.+|||-=.-. .+... ..+.+++=||.-.....-.+.+...+.
T Consensus 64 ~~Rtr~~D~~i~~~~~~---------g~~qvV~LGaGlDTr~---~Rl~~--~~~~~~~EvD~P~v~~~K~~~l~~~~~~ 129 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAA---------GIRQVVILGAGLDTRA---YRLPW--PDGTRVFEVDQPAVLAFKEKVLAELGAE 129 (260)
T ss_pred HHHHHHHHHHHHHHHhc---------CCcEEEEeCCccccHH---HhcCC--CCCCeEEECCChHHHHHHHHHHHHcCCC
Confidence 45666666777776643 2346999999965444 23321 112466666655443343444443332
Q ss_pred -CCCcEEEEEecccc-cC--------CCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEeccc
Q psy17734 395 -AQSDVTIVSEDMRT-WN--------APEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454 (626)
Q Consensus 395 -~~~nV~vi~~D~~~-~~--------~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~ 454 (626)
.. +++++..|+++ |. .+.+.-++++|-+-.++..+....++..+.+...||+.++-+..
T Consensus 130 ~~~-~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 130 PPA-HRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred CCC-ceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 34 49999999872 21 02456688888887777776667788888777778888776543
No 303
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=84.05 E-value=2.6 Score=39.25 Aligned_cols=58 Identities=21% Similarity=0.039 Sum_probs=26.9
Q ss_pred EEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHH-HHHH--HHHcCCCCCcEEEEEecc
Q psy17734 348 VVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVV-GLKY--KKEEQWAQSDVTIVSEDM 406 (626)
Q Consensus 348 DvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~-a~~~--~~~n~~~~~nV~vi~~D~ 406 (626)
||||+.|.+......+.+..+...+|+++|.+|.... .+++ +..+.-.+. +++.....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~-~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGE-VEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTT-GGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCce-EEEEEeec
Confidence 8999999443322222123344469999999998763 3333 333433333 55555433
No 304
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=82.37 E-value=3.7 Score=44.32 Aligned_cols=92 Identities=21% Similarity=0.181 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc----C--CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW----N--APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~----~--~p~k~ 415 (626)
++.+||..|+ |.++.++++.++..|+ .+|++++.++.-....+ ..+.. .++..+-.++ . .+..+
T Consensus 191 ~g~~VlV~G~--G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~---~~Ga~----~~i~~~~~~~~~~i~~~~~~g~ 260 (371)
T cd08281 191 PGQSVAVVGL--GGVGLSALLGAVAAGA-SQVVAVDLNEDKLALAR---ELGAT----ATVNAGDPNAVEQVRELTGGGV 260 (371)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHH---HcCCc----eEeCCCchhHHHHHHHHhCCCC
Confidence 5678999885 6788888888887775 27999999875432222 22321 1222211111 0 12368
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|+++- ..| .++.+..+.+.|+++|.++-
T Consensus 261 d~vid-~~G-------~~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 261 DYAFE-MAG-------SVPALETAYEITRRGGTTVT 288 (371)
T ss_pred CEEEE-CCC-------ChHHHHHHHHHHhcCCEEEE
Confidence 98874 222 23466666778999998774
No 305
>KOG2078|consensus
Probab=82.09 E-value=0.74 Score=50.46 Aligned_cols=62 Identities=31% Similarity=0.341 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcCCCCCcEEEEEeccccc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVSEDMRTW 409 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~~~~~nV~vi~~D~~~~ 409 (626)
.+.+|-|+-||-|+++ +-|+++. ++|||-|.||.++..+ .++..|.....+|++++.|..++
T Consensus 249 ~gevv~D~FaGvGPfa---~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFA---LPAAKKG---CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred CcchhhhhhcCcCccc---cchhhcC---cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 5678999999999998 5666643 5999999999998544 45566777666699999888765
No 306
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=81.86 E-value=8.9 Score=40.31 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEecc
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSEL 422 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSEl 422 (626)
+.+|+.+|| |.++.++++.++..|+ ..|+++|.++....... ... ++. ..+. ....+|+++ |.
T Consensus 145 ~~~vlV~G~--G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~---~~~-------~i~--~~~~-~~~g~Dvvi-d~ 207 (308)
T TIGR01202 145 VLPDLIVGH--GTLGRLLARLTKAAGG-SPPAVWETNPRRRDGAT---GYE-------VLD--PEKD-PRRDYRAIY-DA 207 (308)
T ss_pred CCcEEEECC--CHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhh---hcc-------ccC--hhhc-cCCCCCEEE-EC
Confidence 456888875 6788888888887786 25778888764321111 111 111 1110 124689887 33
Q ss_pred ccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 423 LGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 423 lgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.| .+..++.+.+.|+++|.++
T Consensus 208 ~G-------~~~~~~~~~~~l~~~G~iv 228 (308)
T TIGR01202 208 SG-------DPSLIDTLVRRLAKGGEIV 228 (308)
T ss_pred CC-------CHHHHHHHHHhhhcCcEEE
Confidence 33 2446677778899999987
No 307
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=81.76 E-value=3.8 Score=43.37 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA------PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~------p~k 414 (626)
++.+.+|.--|.|.-+...+..... ..+++|+|.+|.|+ .+++..... +++ ++++++...++.. .++
T Consensus 23 ~~giyiD~TlG~GGHS~~iL~~l~~---~~~li~~DrD~~Ai~~a~~~l~~~--~~r-~~~v~~~F~~l~~~l~~~~i~~ 96 (314)
T COG0275 23 PDGIYIDGTLGAGGHSRAILEKLPD---LGRLIGIDRDPQAIAIAKERLKEF--DGR-VTLVHGNFANLAEALKELGIGK 96 (314)
T ss_pred CCcEEEEecCCCcHhHHHHHHhCCC---CCeEEEEcCCHHHHHHHHHHhhcc--CCc-EEEEeCcHHHHHHHHHhcCCCc
Confidence 5579999999999999877765532 24899999999998 555544333 466 9999998877642 257
Q ss_pred ccEEEecc
Q psy17734 415 ADIMVSEL 422 (626)
Q Consensus 415 ~DiIVSEl 422 (626)
+|-|+.+|
T Consensus 97 vDGiL~DL 104 (314)
T COG0275 97 VDGILLDL 104 (314)
T ss_pred eeEEEEec
Confidence 78777654
No 308
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=81.53 E-value=6.7 Score=40.54 Aligned_cols=129 Identities=19% Similarity=0.135 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcC-CccEEEEEeCC-----HH--------
Q psy17734 316 PIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEAN-RKVRVYAVEKN-----MS-------- 381 (626)
Q Consensus 316 ~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g-~~~~V~AVE~n-----p~-------- 381 (626)
..|....+.+++..+.+-+ + ..|+++|+-+|.-++++....+..+ .+.+|++.|.= +.
T Consensus 56 ~~Rl~~L~~~~~~v~~~~v-------p-GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~ 127 (248)
T PF05711_consen 56 RERLDNLYQAVEQVLAEDV-------P-GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADK 127 (248)
T ss_dssp HHHHHHHHHHHHHCCHTTS---------SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCC
T ss_pred HHHHHHHHHHHHHHHhcCC-------C-eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccc
Confidence 3444555666666554422 3 3699999999976654333333222 23589988731 00
Q ss_pred ----------HHHHHHHHHH----cCCCCCcEEEEEecccccCCC---CCccEEEeccccccCCCCCcHHHHHHHHHhcc
Q psy17734 382 ----------AVVGLKYKKE----EQWAQSDVTIVSEDMRTWNAP---EKADIMVSELLGSFGDNELSPECLYAAQKYLK 444 (626)
Q Consensus 382 ----------a~~a~~~~~~----n~~~~~nV~vi~~D~~~~~~p---~k~DiIVSEllgsfg~~El~pe~L~~~~r~Lk 444 (626)
....+..++. .++.+.+|++++|...+--.. +++-++--. .-..|..-++|+.+...|.
T Consensus 128 ~~~~~~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD----~DlYesT~~aLe~lyprl~ 203 (248)
T PF05711_consen 128 GWEFHEYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLD----CDLYESTKDALEFLYPRLS 203 (248)
T ss_dssp HCTCCGCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE-------SHHHHHHHHHHHGGGEE
T ss_pred hhhhhhcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEe----ccchHHHHHHHHHHHhhcC
Confidence 0123333333 233223499999998764321 333222111 1112223567888888899
Q ss_pred cCcEEEecccee
Q psy17734 445 EDGISIPYNYTS 456 (626)
Q Consensus 445 pgGi~IP~~~t~ 456 (626)
|||++|-+.|..
T Consensus 204 ~GGiIi~DDY~~ 215 (248)
T PF05711_consen 204 PGGIIIFDDYGH 215 (248)
T ss_dssp EEEEEEESSTTT
T ss_pred CCeEEEEeCCCC
Confidence 999999999877
No 309
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=81.34 E-value=5.2 Score=39.98 Aligned_cols=90 Identities=22% Similarity=0.283 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc------cCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT------WNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~------~~~p~k~ 415 (626)
++.+||..|+|. ++..+++.++..| .+|++++.++......+. .+.. .++.....+ ......+
T Consensus 134 ~~~~vli~g~~~--~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~---~g~~----~~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T cd05188 134 PGDTVLVLGAGG--VGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE---LGAD----HVIDYKEEDLEEELRLTGGGGA 202 (271)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH---hCCc----eeccCCcCCHHHHHHHhcCCCC
Confidence 567899999886 7766677777777 599999998754322222 2211 112111111 1123579
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|+++... + .+..+....+.|+++|.++
T Consensus 203 d~vi~~~----~----~~~~~~~~~~~l~~~G~~v 229 (271)
T cd05188 203 DVVIDAV----G----GPETLAQALRLLRPGGRIV 229 (271)
T ss_pred CEEEECC----C----CHHHHHHHHHhcccCCEEE
Confidence 9998521 1 1135566667889999877
No 310
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=81.20 E-value=5.5 Score=42.36 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc---cc---cCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM---RT---WNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~---~~---~~~p~k~ 415 (626)
++.+||..|+ |.++.++++.++..|. ..|++++.++.....++. .+.. .++..+- .+ ......+
T Consensus 160 ~g~~vlV~G~--g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~---~Ga~----~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 160 EGKNVIIIGA--GTIGLLAIQCAVALGA-KSVTAIDINSEKLALAKS---LGAM----QTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH---cCCc----eEecCcccCHHHHHHHhcCCCC
Confidence 5678999975 6798888888888885 258899988754422221 2221 1222111 11 1112467
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|.+|-|..|. +..+....+.|+++|.++-
T Consensus 230 d~~v~d~~G~-------~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 230 DQLILETAGV-------PQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred CeEEEECCCC-------HHHHHHHHHHhhcCCEEEE
Confidence 8555554431 3456666788999998764
No 311
>PLN02740 Alcohol dehydrogenase-like
Probab=80.80 E-value=10 Score=41.05 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec-----c----cccCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED-----M----RTWNAP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D-----~----~~~~~p 412 (626)
++.+||..|+ |+++.++++.++..|+ .+|++++.++.-....+ .-+.. . ++..+ . .++..
T Consensus 198 ~g~~VlV~G~--G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~---~~Ga~---~-~i~~~~~~~~~~~~v~~~~~- 266 (381)
T PLN02740 198 AGSSVAIFGL--GAVGLAVAEGARARGA-SKIIGVDINPEKFEKGK---EMGIT---D-FINPKDSDKPVHERIREMTG- 266 (381)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHH---HcCCc---E-EEecccccchHHHHHHHHhC-
Confidence 5678999986 7899988999988885 37999999875432222 22321 2 22211 1 11111
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEEe
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKED-GISIP 451 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~IP 451 (626)
..+|+++- ..| .+..+..+.+.++++ |.++-
T Consensus 267 ~g~dvvid-~~G-------~~~~~~~a~~~~~~g~G~~v~ 298 (381)
T PLN02740 267 GGVDYSFE-CAG-------NVEVLREAFLSTHDGWGLTVL 298 (381)
T ss_pred CCCCEEEE-CCC-------ChHHHHHHHHhhhcCCCEEEE
Confidence 26898865 212 244566666778886 87653
No 312
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=80.36 E-value=3 Score=43.68 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=45.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---CCCccEEEec
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKADIMVSE 421 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~DiIVSE 421 (626)
+++|+-||-|.++.-+-+| |. ..|.|+|.++.|..+.+... . .++.+|++++.. +..+|+++.-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a----g~-~~~~a~e~~~~a~~~y~~N~-------~-~~~~~Di~~~~~~~l~~~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA----GF-EVVWAVEIDPDACETYKANF-------P-EVICGDITEIDPSDLPKDVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT----TE-EEEEEEESSHHHHHHHHHHH-------T-EEEESHGGGCHHHHHHHT-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhc----Cc-EEEEEeecCHHHHHhhhhcc-------c-ccccccccccccccccccceEEEec
Confidence 6899999999998643333 33 38999999999885544321 2 778899999863 3369999875
Q ss_pred c
Q psy17734 422 L 422 (626)
Q Consensus 422 l 422 (626)
+
T Consensus 69 p 69 (335)
T PF00145_consen 69 P 69 (335)
T ss_dssp -
T ss_pred c
Confidence 4
No 313
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=79.58 E-value=4.4 Score=42.11 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhc-CCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEA-NRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~-g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~ 411 (626)
++..++++|||+|.|+.+...+.... ..+..++.||....-...-.......-... ++=+..|++++.+
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~~~~~~~~~-~~R~riDI~dl~l 87 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKIRKDESEPK-FERLRIDIKDLDL 87 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhhhccCCCCc-eEEEEEEeeccch
Confidence 55689999999999999877776432 023589999986432222222222221123 7778899999875
No 314
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=79.58 E-value=11 Score=39.41 Aligned_cols=92 Identities=18% Similarity=0.105 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc------cCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT------WNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~------~~~p~k~ 415 (626)
.+.+||+.|+ |.++.++++.++..| .+|++++.++......+. .+.. .++...-.. ......+
T Consensus 165 ~~~~vli~g~--g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~---~g~~----~~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 165 PGETVLVIGL--GGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE---LGAD----EVLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH---hCCC----EEEcCCCcCHHHHHHHhcCCCc
Confidence 4567888664 567777788888777 479999988754422221 2321 111111111 1123568
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
|+++.- . ..+..+....+.|+++|.++=.
T Consensus 234 D~vid~-~-------g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 234 DVIFDF-V-------GTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred eEEEEC-C-------CCHHHHHHHHHHhhcCCEEEEE
Confidence 988752 1 1245677778899999998743
No 315
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=79.40 E-value=17 Score=38.84 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~ 383 (626)
++.+|+..|| |+++.++++.++..|. +|++++.++.-.
T Consensus 166 ~g~~VlV~G~--G~vG~~a~~~a~~~G~--~vi~~~~~~~~~ 203 (349)
T TIGR03201 166 KGDLVIVIGA--GGVGGYMVQTAKAMGA--AVVAIDIDPEKL 203 (349)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC--eEEEEcCCHHHH
Confidence 5678999997 8888888888888774 899999987543
No 316
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=79.22 E-value=8.5 Score=43.91 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~ 383 (626)
++.+|+++|+|. .++.++.+++..|+ +|+++|.++...
T Consensus 163 p~akVlViGaG~--iGl~Aa~~ak~lGA--~V~v~d~~~~rl 200 (511)
T TIGR00561 163 PPAKVLVIGAGV--AGLAAIGAANSLGA--IVRAFDTRPEVK 200 (511)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCC--EEEEEeCCHHHH
Confidence 467999999864 66666777777785 799999998643
No 317
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=79.18 E-value=12 Score=37.35 Aligned_cols=76 Identities=12% Similarity=0.057 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
++++||..|+ +|.++..+++...+.| .+|++++.++... ...+.+...+ ..+ ++++..|+.....
T Consensus 11 ~~k~vlItG~-~g~iG~~la~~l~~~G--~~Vi~~~r~~~~~~~~~~~l~~~~-~~~-~~~~~~d~~~~~~~~~~~~~~~ 85 (247)
T PRK08945 11 KDRIILVTGA-GDGIGREAALTYARHG--ATVILLGRTEEKLEAVYDEIEAAG-GPQ-PAIIPLDLLTATPQNYQQLADT 85 (247)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCC--CcEEEEeCCHHHHHHHHHHHHhcC-CCC-ceEEEecccCCCHHHHHHHHHH
Confidence 5678999995 6677766666665556 4999999987543 2222232222 234 8888888864321
Q ss_pred ----CCCccEEEecc
Q psy17734 412 ----PEKADIMVSEL 422 (626)
Q Consensus 412 ----p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 86 ~~~~~~~id~vi~~A 100 (247)
T PRK08945 86 IEEQFGRLDGVLHNA 100 (247)
T ss_pred HHHHhCCCCEEEECC
Confidence 14789998743
No 318
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=78.39 E-value=13 Score=37.72 Aligned_cols=103 Identities=22% Similarity=0.204 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCCchHHH-HHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHH-----------------------------
Q psy17734 342 VVTTIMVVGAGRGPLVT-ASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKK----------------------------- 390 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~-~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~----------------------------- 390 (626)
+..++.|=.||.|-|.. ..+...... ..|+|-|+++.++ .|.+++.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l---~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eA 127 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRL---RRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEA 127 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGE---EEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHH---HhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHH
Confidence 56789999999997643 222223322 3899999999876 5555430
Q ss_pred ------------HcCCCCCcEEEEEecccccC------CCCCccEEEeccc-cccCCCCC------cHHHHHHHHHhccc
Q psy17734 391 ------------EEQWAQSDVTIVSEDMRTWN------APEKADIMVSELL-GSFGDNEL------SPECLYAAQKYLKE 445 (626)
Q Consensus 391 ------------~n~~~~~nV~vi~~D~~~~~------~p~k~DiIVSEll-gsfg~~El------~pe~L~~~~r~Lkp 445 (626)
..|-... ..+...|+.+.. ....+||||.++. |..-+-++ .+.+|..+...|-+
T Consensus 128 l~sA~RL~~~l~~~g~~~p-~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~ 206 (246)
T PF11599_consen 128 LESADRLRERLAAEGGDEP-HAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE 206 (246)
T ss_dssp HHHHHHHHHHHHHTTSS---EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T
T ss_pred HHHHHHHHHHHHhcCCCCc-hhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC
Confidence 1111223 667778887743 2345799999874 33333333 35578888777733
Q ss_pred CcE
Q psy17734 446 DGI 448 (626)
Q Consensus 446 gGi 448 (626)
+++
T Consensus 207 ~sV 209 (246)
T PF11599_consen 207 RSV 209 (246)
T ss_dssp T-E
T ss_pred CcE
Confidence 333
No 319
>KOG2198|consensus
Probab=77.59 E-value=20 Score=39.01 Aligned_cols=127 Identities=14% Similarity=0.121 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC---------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN--------- 410 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~--------- 410 (626)
.++.+|||+.|-.|.=+..+++|.-..-....|+|=|.++.-. ...+...+ ....++.+.+.|...++
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~--l~~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR--LPSPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc--cCCcceeeecccceeccccccccCch
Confidence 4778999999999988877777765321123899999997544 22222221 12223556555554332
Q ss_pred -CCCCccEEEecccccc-CCCCC--------------------cHHHHHHHHHhcccCcEEEeccceeeEEeccChHhHH
Q psy17734 411 -APEKADIMVSELLGSF-GDNEL--------------------SPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFT 468 (626)
Q Consensus 411 -~p~k~DiIVSEllgsf-g~~El--------------------~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~l~~ 468 (626)
...+||-|+++..-|. |..+. .-.+|...-++||+||.++=+.++ +-||+-...-+
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS--LnpieNEaVV~ 309 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS--LNPIENEAVVQ 309 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC--CCchhhHHHHH
Confidence 1257999988654221 11111 112445556789999999977664 57888876655
Q ss_pred HHh
Q psy17734 469 QVK 471 (626)
Q Consensus 469 ~~~ 471 (626)
+..
T Consensus 310 ~~L 312 (375)
T KOG2198|consen 310 EAL 312 (375)
T ss_pred HHH
Confidence 544
No 320
>KOG1201|consensus
Probab=77.05 E-value=12 Score=39.68 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=55.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-------
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA------- 411 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~------- 411 (626)
+..+.+||.=|+|.|.==..+++.|++ | .+++-.|.|+... .+.+..+++| + ++...+|+.+.+.
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~r-g--~~~vl~Din~~~~~etv~~~~~~g---~-~~~y~cdis~~eei~~~a~~ 107 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKR-G--AKLVLWDINKQGNEETVKEIRKIG---E-AKAYTCDISDREEIYRLAKK 107 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHh-C--CeEEEEeccccchHHHHHHHHhcC---c-eeEEEecCCCHHHHHHHHHH
Confidence 456789999999999766666677764 4 3888999997654 5555555553 5 9999999877541
Q ss_pred ----CCCccEEEec
Q psy17734 412 ----PEKADIMVSE 421 (626)
Q Consensus 412 ----p~k~DiIVSE 421 (626)
-+.+|++|.+
T Consensus 108 Vk~e~G~V~ILVNN 121 (300)
T KOG1201|consen 108 VKKEVGDVDILVNN 121 (300)
T ss_pred HHHhcCCceEEEec
Confidence 1679999885
No 321
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=77.03 E-value=8.1 Score=42.03 Aligned_cols=100 Identities=15% Similarity=0.122 Sum_probs=55.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccc--------ccCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMR--------TWNAPE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~--------~~~~p~ 413 (626)
++.+||+.|| |.++.++++.++..|. .+|++++.++......+.. + + ++++...-. ++....
T Consensus 184 ~g~~VlV~g~--G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~---~-~---~~vi~~~~~~~~~~~l~~~~~~~ 253 (386)
T cd08283 184 PGDTVAVWGC--GPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSH---L-G---AETINFEEVDDVVEALRELTGGR 253 (386)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc---C-C---cEEEcCCcchHHHHHHHHHcCCC
Confidence 5678999976 5666666777777774 3699999987544222221 1 1 233322211 122223
Q ss_pred CccEEEeccccccC------------CC-CCcHHHHHHHHHhcccCcEEEe
Q psy17734 414 KADIMVSELLGSFG------------DN-ELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 414 k~DiIVSEllgsfg------------~~-El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+|+++--.-|.+. .. ......+....+.|+++|.++=
T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~ 304 (386)
T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSI 304 (386)
T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEE
Confidence 69998763211100 00 0124466777788999997653
No 322
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=76.59 E-value=15 Score=37.09 Aligned_cols=76 Identities=16% Similarity=0.099 Sum_probs=51.2
Q ss_pred CCEEEEEcCCCc--hHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecc-cccC-CCCCccE
Q psy17734 343 VTTIMVVGAGRG--PLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDM-RTWN-APEKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG--~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~-~~~~-~p~k~Di 417 (626)
-+.++++.++-| +.+..++.|+++.| .+++.|-.++... ...+.+...+..+. ++++.++. +++- .-..+|.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~Tg--GR~vCIvp~~~~~~~~~~~l~~~~~~~~-vEfvvg~~~e~~~~~~~~iDF 118 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTG--GRHVCIVPDEQSLSEYKKALGEAGLSDV-VEFVVGEAPEEVMPGLKGIDF 118 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcC--CeEEEEcCChhhHHHHHHHHhhcccccc-ceEEecCCHHHHHhhccCCCE
Confidence 356777765543 34555566676777 5999999887654 66666666777777 89998884 3332 2267999
Q ss_pred EEec
Q psy17734 418 MVSE 421 (626)
Q Consensus 418 IVSE 421 (626)
++-+
T Consensus 119 ~vVD 122 (218)
T PF07279_consen 119 VVVD 122 (218)
T ss_pred EEEe
Confidence 8763
No 323
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=76.11 E-value=13 Score=39.11 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=51.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---CCCc
Q psy17734 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---PEKA 415 (626)
Q Consensus 340 ~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---p~k~ 415 (626)
+-.++.|+++| -.-..+. |.+..|-..+|..||+++..+ ...+.....+.. ||+.+.-|.|+--+ ..+|
T Consensus 150 DL~gK~I~vvG-DDDLtsi----a~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~--~ie~~~~Dlr~plpe~~~~kF 222 (354)
T COG1568 150 DLEGKEIFVVG-DDDLTSI----ALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN--NIEAFVFDLRNPLPEDLKRKF 222 (354)
T ss_pred CcCCCeEEEEc-CchhhHH----HHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc--chhheeehhcccChHHHHhhC
Confidence 44678899999 3334443 222234335999999999777 444555556665 69999999987432 2799
Q ss_pred cEEEecc
Q psy17734 416 DIMVSEL 422 (626)
Q Consensus 416 DiIVSEl 422 (626)
|+.+.++
T Consensus 223 DvfiTDP 229 (354)
T COG1568 223 DVFITDP 229 (354)
T ss_pred CeeecCc
Confidence 9999865
No 324
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=75.11 E-value=7 Score=38.35 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~ 383 (626)
++.+|||--||+|.-+. ||.+.|+ +.+|+|.++..+
T Consensus 191 ~gdiVlDpF~GSGTT~~----aa~~l~R--~~ig~E~~~~y~ 226 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAV----AAEELGR--RYIGIEIDEEYC 226 (231)
T ss_dssp TT-EEEETT-TTTHHHH----HHHHTT---EEEEEESSHHHH
T ss_pred cceeeehhhhccChHHH----HHHHcCC--eEEEEeCCHHHH
Confidence 57899999999999874 5555664 899999999766
No 325
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=74.15 E-value=36 Score=35.64 Aligned_cols=90 Identities=20% Similarity=0.152 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec----ccc-c--CCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED----MRT-W--NAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D----~~~-~--~~p~k 414 (626)
++.+||..|++ |.++.++++.++..|. +|+++..++.-....+ ..|.. . ++..+ ..+ + .....
T Consensus 138 ~g~~VLI~ga~-g~vG~~aiqlAk~~G~--~Vi~~~~s~~~~~~~~---~lGa~---~-vi~~~~~~~~~~~~~~~~~~g 207 (325)
T TIGR02825 138 GGETVMVNAAA-GAVGSVVGQIAKLKGC--KVVGAAGSDEKVAYLK---KLGFD---V-AFNYKTVKSLEETLKKASPDG 207 (325)
T ss_pred CCCEEEEeCCc-cHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHH---HcCCC---E-EEeccccccHHHHHHHhCCCC
Confidence 56789999874 6777777888887784 8999998864332222 22331 1 22211 111 0 01246
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+|+++- ..| . ..+....+.|+++|.++
T Consensus 208 vdvv~d-~~G----~----~~~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 208 YDCYFD-NVG----G----EFSNTVIGQMKKFGRIA 234 (325)
T ss_pred eEEEEE-CCC----H----HHHHHHHHHhCcCcEEE
Confidence 898874 222 1 23455667899999987
No 326
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=74.12 E-value=22 Score=37.98 Aligned_cols=94 Identities=23% Similarity=0.294 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec-------ccccCCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED-------MRTWNAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D-------~~~~~~p~k 414 (626)
++.+||..|+ |.++.++++.++..|. .+|++++.++.-...++ ..+.... +..-..+ +.++.....
T Consensus 177 ~g~~vlI~g~--g~vG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~---~~g~~~v-i~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGDTVVVQGA--GPLGLYAVAAAKLAGA-RRVIVIDGSPERLELAR---EFGADAT-IDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH---HcCCCeE-EcCcccccHHHHHHHHHHhCCCC
Confidence 5678888874 7899888888888884 28999988764332222 2233111 1111111 111222246
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+|+++.- .| ....+....+.|+++|.++
T Consensus 250 ~d~vid~-~g-------~~~~~~~~~~~l~~~G~~v 277 (361)
T cd08231 250 ADVVIEA-SG-------HPAAVPEGLELLRRGGTYV 277 (361)
T ss_pred CcEEEEC-CC-------ChHHHHHHHHHhccCCEEE
Confidence 8998752 22 1235666678899999887
No 327
>PRK11524 putative methyltransferase; Provisional
Probab=74.08 E-value=8.6 Score=40.31 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYK 389 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~ 389 (626)
++.+|||--+|+|.-+. ||.+.|+ +.+|+|.++..+ ++++.+
T Consensus 208 ~GD~VLDPF~GSGTT~~----AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGA----VAKASGR--KFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred CCCEEEECCCCCcHHHH----HHHHcCC--CEEEEeCCHHHHHHHHHHH
Confidence 67899999999999874 5555664 999999999766 555554
No 328
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=74.03 E-value=15 Score=42.56 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=50.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHc-----C--CCCCcEEEEEecccccCC-
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEE-----Q--WAQSDVTIVSEDMRTWNA- 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n-----~--~~~~nV~vi~~D~~~~~~- 411 (626)
.++++||+.|+ +|.++..+++...+.| .+|+++..++... ...+.+... + ...+ ++++.+|+.+...
T Consensus 78 ~~gKvVLVTGA-TGgIG~aLAr~LLk~G--~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~-v~iV~gDLtD~esI 153 (576)
T PLN03209 78 KDEDLAFVAGA-TGKVGSRTVRELLKLG--FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEK-LEIVECDLEKPDQI 153 (576)
T ss_pred CCCCEEEEECC-CCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHhhhhccccccccccCc-eEEEEecCCCHHHH
Confidence 35678999887 5677777777666566 4899998886543 222222111 1 1134 9999999987541
Q ss_pred ---CCCccEEEec
Q psy17734 412 ---PEKADIMVSE 421 (626)
Q Consensus 412 ---p~k~DiIVSE 421 (626)
-+.+|+||+.
T Consensus 154 ~~aLggiDiVVn~ 166 (576)
T PLN03209 154 GPALGNASVVICC 166 (576)
T ss_pred HHHhcCCCEEEEc
Confidence 1578999885
No 329
>PLN02494 adenosylhomocysteinase
Probab=73.94 E-value=16 Score=41.20 Aligned_cols=98 Identities=20% Similarity=0.251 Sum_probs=58.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHH-HHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSA-VVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a-~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
.+++|+++|+| .++..+++.++..|+ +|+++|.++.. ..+. ..+. .++ ++.+.- ..+|++|.
T Consensus 253 aGKtVvViGyG--~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~----~~G~-----~vv--~leEal--~~ADVVI~ 315 (477)
T PLN02494 253 AGKVAVICGYG--DVGKGCAAAMKAAGA--RVIVTEIDPICALQAL----MEGY-----QVL--TLEDVV--SEADIFVT 315 (477)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHCCC--EEEEEeCCchhhHHHH----hcCC-----eec--cHHHHH--hhCCEEEE
Confidence 57899999988 477666777776774 89999998743 2221 1232 222 333321 46899986
Q ss_pred ccccccCCCCCcHHHH-HHHHHhcccCcEEEeccceeeEEeccChHh
Q psy17734 421 ELLGSFGDNELSPECL-YAAQKYLKEDGISIPYNYTSYIAPIMSHKL 466 (626)
Q Consensus 421 Ellgsfg~~El~pe~L-~~~~r~LkpgGi~IP~~~t~y~api~s~~l 466 (626)
.-| + ..++ ...-..+|+||+++--.- +-..|....|
T Consensus 316 -tTG----t---~~vI~~e~L~~MK~GAiLiNvGr--~~~eID~~aL 352 (477)
T PLN02494 316 -TTG----N---KDIIMVDHMRKMKNNAIVCNIGH--FDNEIDMLGL 352 (477)
T ss_pred -CCC----C---ccchHHHHHhcCCCCCEEEEcCC--CCCccCHHHH
Confidence 111 1 1232 444567999999885532 2234444444
No 330
>KOG1331|consensus
Probab=73.86 E-value=2.2 Score=44.62 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=60.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIV 419 (626)
.+.+++|+|||-|-... . +....++++|.+.... .+++ .+. ..+..+|+-.++.+ +.||..+
T Consensus 45 ~gsv~~d~gCGngky~~------~--~p~~~~ig~D~c~~l~~~ak~-------~~~-~~~~~ad~l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG------V--NPLCLIIGCDLCTGLLGGAKR-------SGG-DNVCRADALKLPFREESFDAAL 108 (293)
T ss_pred CcceeeecccCCcccCc------C--CCcceeeecchhhhhcccccc-------CCC-ceeehhhhhcCCCCCCccccch
Confidence 46899999999997642 1 1124788999876444 2221 111 36777888888764 6899887
Q ss_pred eccc-cccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELL-GSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEll-gsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|--. .++...+....+++...|.|+|||.+.
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNAL 140 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceE
Confidence 7332 233233334567888889999999755
No 331
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=73.26 E-value=22 Score=38.33 Aligned_cols=93 Identities=19% Similarity=0.183 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEE--ec----ccccCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVS--ED----MRTWNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~--~D----~~~~~~p~k~ 415 (626)
.+.+||..|| |+++.++++.++..|+ .+|++++.++......+ ..+.... +..-. .+ +.++.. ..+
T Consensus 185 ~g~~VlV~G~--G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~---~~Ga~~~-i~~~~~~~~~~~~v~~~~~-~g~ 256 (368)
T TIGR02818 185 EGDTVAVFGL--GGIGLSVIQGARMAKA-SRIIAIDINPAKFELAK---KLGATDC-VNPNDYDKPIQEVIVEITD-GGV 256 (368)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH---HhCCCeE-EcccccchhHHHHHHHHhC-CCC
Confidence 5678999986 6888888888887775 37999999875432222 2232111 11110 01 111111 368
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKED-GISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~I 450 (626)
|+++- ..| .+..+....+.++++ |.++
T Consensus 257 d~vid-~~G-------~~~~~~~~~~~~~~~~G~~v 284 (368)
T TIGR02818 257 DYSFE-CIG-------NVNVMRAALECCHKGWGESI 284 (368)
T ss_pred CEEEE-CCC-------CHHHHHHHHHHhhcCCCeEE
Confidence 88874 222 244566666778886 8654
No 332
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=73.23 E-value=6.9 Score=34.57 Aligned_cols=63 Identities=24% Similarity=0.352 Sum_probs=42.1
Q ss_pred EEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-----CCCccEEEe
Q psy17734 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKADIMVS 420 (626)
Q Consensus 346 VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~DiIVS 420 (626)
|+.+|+| .++...++...+.+ .+|+.+|.++......+. . .+.++.||..+... -+++|.+|.
T Consensus 1 vvI~G~g--~~~~~i~~~L~~~~--~~vvvid~d~~~~~~~~~---~-----~~~~i~gd~~~~~~l~~a~i~~a~~vv~ 68 (116)
T PF02254_consen 1 VVIIGYG--RIGREIAEQLKEGG--IDVVVIDRDPERVEELRE---E-----GVEVIYGDATDPEVLERAGIEKADAVVI 68 (116)
T ss_dssp EEEES-S--HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH---T-----TSEEEES-TTSHHHHHHTTGGCESEEEE
T ss_pred eEEEcCC--HHHHHHHHHHHhCC--CEEEEEECCcHHHHHHHh---c-----ccccccccchhhhHHhhcCccccCEEEE
Confidence 3555655 67777777777633 489999999977533332 1 37899999987532 268998877
No 333
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=73.07 E-value=18 Score=41.14 Aligned_cols=83 Identities=14% Similarity=0.081 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC------CCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN------APEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~------~p~k 414 (626)
+..+|+|--||+|.+-..+....++...+..+||.|+++... .++.++.-++.... +.+.++|...-+ ..++
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~-~~i~~~dtl~~~~~~~~~~~~~ 264 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGD-ANIRHGDTLSNPKHDDKDDKGK 264 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcc-ccccccccccCCcccccCCccc
Confidence 445899999999987654444443221025899999998665 77777766766532 666776654322 2267
Q ss_pred ccEEEeccccc
Q psy17734 415 ADIMVSELLGS 425 (626)
Q Consensus 415 ~DiIVSEllgs 425 (626)
||.||+.+.-+
T Consensus 265 ~D~viaNPPf~ 275 (489)
T COG0286 265 FDFVIANPPFS 275 (489)
T ss_pred eeEEEeCCCCC
Confidence 99999987543
No 334
>PLN02427 UDP-apiose/xylose synthase
Probab=72.88 E-value=9 Score=41.56 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=47.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~Di 417 (626)
+.++||+.|+ +|.++..+++.....+. .+|++++.++.....+.......|..+ ++++.+|+++... -..+|+
T Consensus 13 ~~~~VlVTGg-tGfIGs~lv~~L~~~~g-~~V~~l~r~~~~~~~l~~~~~~~~~~~-~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 13 KPLTICMIGA-GGFIGSHLCEKLMTETP-HKVLALDVYNDKIKHLLEPDTVPWSGR-IQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred cCcEEEEECC-cchHHHHHHHHHHhcCC-CEEEEEecCchhhhhhhccccccCCCC-eEEEEcCCCChHHHHHHhhcCCE
Confidence 5578998884 89999887776654321 489999976532211110000124445 9999999987531 135898
Q ss_pred EEe
Q psy17734 418 MVS 420 (626)
Q Consensus 418 IVS 420 (626)
||-
T Consensus 90 ViH 92 (386)
T PLN02427 90 TIN 92 (386)
T ss_pred EEE
Confidence 875
No 335
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=72.32 E-value=31 Score=36.01 Aligned_cols=92 Identities=22% Similarity=0.237 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-----CCCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-----NAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-----~~p~k~D 416 (626)
++.+||..|+ |.++.++++.++..|.+ +|++++.++.....++. .+.. .++..+-.+. .....+|
T Consensus 159 ~g~~vlI~g~--g~vg~~~~~la~~~G~~-~v~~~~~~~~~~~~~~~---~g~~----~~~~~~~~~~~~~~~~~~~~vd 228 (334)
T cd08234 159 PGDSVLVFGA--GPIGLLLAQLLKLNGAS-RVTVAEPNEEKLELAKK---LGAT----ETVDPSREDPEAQKEDNPYGFD 228 (334)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCc-EEEEECCCHHHHHHHHH---hCCe----EEecCCCCCHHHHHHhcCCCCc
Confidence 5578899874 67888878888877752 48999988754422222 2221 2333222211 1235799
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+++.- .| ....+....+.|+++|.++=
T Consensus 229 ~v~~~-~~-------~~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 229 VVIEA-TG-------VPKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred EEEEC-CC-------ChHHHHHHHHHHhcCCEEEE
Confidence 99862 11 23466667788999998763
No 336
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=72.27 E-value=23 Score=38.22 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEE-ec---ccccCCCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVS-ED---MRTWNAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~-~D---~~~~~~p~k~D 416 (626)
++.+||..|+ |.++.++++.++..|+ +|++++.++... .+.+ ..|. -.++. .+ .++.. ..+|
T Consensus 183 ~g~~VlV~G~--G~vG~~avq~Ak~~Ga--~vi~~~~~~~~~~~~~~---~~Ga----~~vi~~~~~~~~~~~~--~~~D 249 (360)
T PLN02586 183 PGKHLGVAGL--GGLGHVAVKIGKAFGL--KVTVISSSSNKEDEAIN---RLGA----DSFLVSTDPEKMKAAI--GTMD 249 (360)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHCCC--EEEEEeCCcchhhhHHH---hCCC----cEEEcCCCHHHHHhhc--CCCC
Confidence 4578888776 6889888888888884 788888775322 1111 1222 11221 11 11111 2588
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+++- ..| .+..+....+.|+++|.++
T Consensus 250 ~vid-~~g-------~~~~~~~~~~~l~~~G~iv 275 (360)
T PLN02586 250 YIID-TVS-------AVHALGPLLGLLKVNGKLI 275 (360)
T ss_pred EEEE-CCC-------CHHHHHHHHHHhcCCcEEE
Confidence 8873 333 2345666778899999877
No 337
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=72.18 E-value=18 Score=38.12 Aligned_cols=91 Identities=18% Similarity=0.287 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec---ccccC-CCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED---MRTWN-APEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D---~~~~~-~p~k~Di 417 (626)
++.+||..|+ |.++.++++.++..|. .+|++++.++......+. .+.. .++..+ .+++. ....+|+
T Consensus 165 ~~~~VLI~g~--g~vG~~~~~lak~~G~-~~v~~~~~s~~~~~~~~~---~g~~----~vi~~~~~~~~~~~~~~~~vd~ 234 (339)
T cd08232 165 AGKRVLVTGA--GPIGALVVAAARRAGA-AEIVATDLADAPLAVARA---MGAD----ETVNLARDPLAAYAADKGDFDV 234 (339)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH---cCCC----EEEcCCchhhhhhhccCCCccE
Confidence 4678888775 5777777888887774 279999988654432222 2221 122221 11222 1245899
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
++.-. | ....+....+.|+++|.++
T Consensus 235 vld~~-g-------~~~~~~~~~~~L~~~G~~v 259 (339)
T cd08232 235 VFEAS-G-------APAALASALRVVRPGGTVV 259 (339)
T ss_pred EEECC-C-------CHHHHHHHHHHHhcCCEEE
Confidence 98621 1 1234666678899999987
No 338
>KOG2651|consensus
Probab=72.15 E-value=6.2 Score=42.97 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~ 383 (626)
+-..|.|+|+|-|-|+.++ +. ..| ..|+|||-|..+.
T Consensus 153 gi~~vvD~GaG~G~LSr~l--Sl-~y~--lsV~aIegsq~~~ 189 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFL--SL-GYG--LSVKAIEGSQRLV 189 (476)
T ss_pred CCCeeEEcCCCchHHHHHH--hh-ccC--ceEEEeccchHHH
Confidence 4567999999999999752 22 244 6999999996554
No 339
>PLN02827 Alcohol dehydrogenase-like
Probab=72.03 E-value=23 Score=38.47 Aligned_cols=91 Identities=13% Similarity=0.175 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEe-----cc----cccCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE-----DM----RTWNAP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~-----D~----~~~~~p 412 (626)
++.+||..|+ |.++.++++.++..|. ..|++++.++.-.... +..+.. .++.. +. .++. .
T Consensus 193 ~g~~VlV~G~--G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a---~~lGa~----~~i~~~~~~~~~~~~v~~~~-~ 261 (378)
T PLN02827 193 KGSSVVIFGL--GTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKA---KTFGVT----DFINPNDLSEPIQQVIKRMT-G 261 (378)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHH---HHcCCc----EEEcccccchHHHHHHHHHh-C
Confidence 5678999975 6799888888887785 3699999876433211 222321 12221 11 1111 1
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEEe
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKED-GISIP 451 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~IP 451 (626)
..+|+++- ..| .+..+..+.+.|++| |.++-
T Consensus 262 ~g~d~vid-~~G-------~~~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 262 GGADYSFE-CVG-------DTGIATTALQSCSDGWGLTVT 293 (378)
T ss_pred CCCCEEEE-CCC-------ChHHHHHHHHhhccCCCEEEE
Confidence 36888874 322 234566666778898 98763
No 340
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=72.01 E-value=14 Score=39.37 Aligned_cols=91 Identities=23% Similarity=0.205 Sum_probs=54.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc-------cCCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT-------WNAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~-------~~~p~k 414 (626)
++.+||..|+ |.++.++++.++..|. .+|++++.++.-....+ ..+.. .++..+-.+ +.....
T Consensus 166 ~g~~vlI~g~--g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~---~~g~~----~~v~~~~~~~~~~i~~~~~~~~ 235 (351)
T cd08285 166 LGDTVAVFGI--GPVGLMAVAGARLRGA-GRIIAVGSRPNRVELAK---EYGAT----DIVDYKNGDVVEQILKLTGGKG 235 (351)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHH---HcCCc----eEecCCCCCHHHHHHHHhCCCC
Confidence 5678888874 6788888888888785 26999998874432222 22331 122221111 111246
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+|+++. +.+ .+..+....+.|+++|.++
T Consensus 236 ~d~vld----~~g----~~~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 236 VDAVII----AGG----GQDTFEQALKVLKPGGTIS 263 (351)
T ss_pred CcEEEE----CCC----CHHHHHHHHHHhhcCCEEE
Confidence 898875 111 1345666777899999877
No 341
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=71.69 E-value=13 Score=37.05 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN 379 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n 379 (626)
...+|+.+|||. ++..+++...+.|. .+++.+|.+
T Consensus 20 ~~~~VlviG~Gg--lGs~ia~~La~~Gv-~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGG--LGSPAALYLAGAGV-GTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCH--HHHHHHHHHHHcCC-CeEEEecCC
Confidence 346899999983 44444555555675 489999876
No 342
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=71.46 E-value=7.3 Score=39.71 Aligned_cols=103 Identities=17% Similarity=0.247 Sum_probs=66.6
Q ss_pred eEEeec---CCCCCCHHHHHHHHHhCCccEEEecCCCccccc--c-cccccccccCCCCcc---cccCCCCCcCccceEE
Q psy17734 8 VSVGLE---YPTCYNIQSQIESLAAECFDYAVLPLVHPRFAR--H-KDVDRYRVFGLPEAQ---VQSLSSICPQWLKLIV 78 (626)
Q Consensus 8 ~~~g~~---~~~~~~~~~~~~~~~~~~~df~~~pi~~~~~~~--~-~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~v 78 (626)
--+|++ ++..-.-.+-+..|.+.|||||=+.|-...-|. - +.+. ... .....+ ..++++.|..-..++
T Consensus 5 h~lGIYEKAlp~~~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~-er~-~l~~ai~etgv~ipSmClSaHRRf- 81 (287)
T COG3623 5 HPLGIYEKALPNGFSWLERLALAKELGFDFVEMSVDESDERLARLDWSKE-ERL-ALVNAIQETGVRIPSMCLSAHRRF- 81 (287)
T ss_pred cccceehhhccCCCCHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHH-HHH-HHHHHHHHhCCCccchhhhhhccC-
Confidence 346773 233334677889999999999999887642221 1 1110 000 000011 122666554333333
Q ss_pred EecCCcccccCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEEc
Q psy17734 79 CDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVS 121 (626)
Q Consensus 79 ~~~s~w~~~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~~ 121 (626)
-+.|.|+.+|+.+.+++++-+.-|.-|||+.|=+.
T Consensus 82 --------PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLA 116 (287)
T COG3623 82 --------PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLA 116 (287)
T ss_pred --------CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeec
Confidence 56899999999999999999999999999998875
No 343
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.13 E-value=24 Score=39.18 Aligned_cols=69 Identities=20% Similarity=0.173 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHH-H-HHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSA-V-VGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a-~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIV 419 (626)
++++|+.+|+|. .++.++++..+.| .+|+++|.++.. . ...+.+... +++++.+|..+- ..+.+|+||
T Consensus 4 ~~k~v~iiG~g~--~G~~~A~~l~~~G--~~V~~~d~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~-~~~~~d~vv 73 (450)
T PRK14106 4 KGKKVLVVGAGV--SGLALAKFLKKLG--AKVILTDEKEEDQLKEALEELGEL-----GIELVLGEYPEE-FLEGVDLVV 73 (450)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCC--CEEEEEeCCchHHHHHHHHHHHhc-----CCEEEeCCcchh-HhhcCCEEE
Confidence 457899999887 5556677766677 489999998532 2 111222211 377777776652 225689887
Q ss_pred e
Q psy17734 420 S 420 (626)
Q Consensus 420 S 420 (626)
.
T Consensus 74 ~ 74 (450)
T PRK14106 74 V 74 (450)
T ss_pred E
Confidence 6
No 344
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.07 E-value=17 Score=36.99 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCc-hHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRG-PLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG-~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|..|+++| .++..+++...+.|. +|+.++.++.....++.+. ...+ . +.++.+|+.+.+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~--~v~l~~r~~~~~~~~~~~~-~~~~-~-~~~~~~D~~~~~~v~~~~~~~~ 83 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA--ELAVTYLNDKARPYVEPLA-EELD-A-PIFLPLDVREPGQLEAVFARIA 83 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCChhhHHHHHHHH-Hhhc-c-ceEEecCcCCHHHHHHHHHHHH
Confidence 5689999999873 667666666665664 7888888754322222222 1222 2 5678888876531
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-+++|++|..-
T Consensus 84 ~~~g~ld~lv~nA 96 (258)
T PRK07533 84 EEWGRLDFLLHSI 96 (258)
T ss_pred HHcCCCCEEEEcC
Confidence 15789999864
No 345
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=71.02 E-value=19 Score=38.31 Aligned_cols=121 Identities=16% Similarity=0.112 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCC-
Q psy17734 316 PIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQW- 394 (626)
Q Consensus 316 ~~ry~~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~- 394 (626)
..|...+.+.+.+++.+ ....|+.+|||- -.++-+.-. +.+.+||=||.=+.+..-.+.+...++
T Consensus 75 a~Rtr~fD~~~~~~~~~---------g~~qvViLgaGL---DTRayRl~~--~~~~~vfEvD~Pevi~~K~~~l~e~~~~ 140 (297)
T COG3315 75 AARTRYFDDFVRAALDA---------GIRQVVILGAGL---DTRAYRLDW--PKGTRVFEVDLPEVIEFKKKLLAERGAT 140 (297)
T ss_pred HHHHHHHHHHHHHHHHh---------cccEEEEecccc---ccceeecCC--CCCCeEEECCCcHHHHHHHHHhhhcCCC
Confidence 46667777777777765 245789999983 211122221 123688888877766655555555443
Q ss_pred -CCCcEEEEEecccccCC----------CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 395 -AQSDVTIVSEDMRTWNA----------PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 395 -~~~nV~vi~~D~~~~~~----------p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
..+ ++.|..|+++-.. +.+.=++|+|-+-.++..|...+++..+...+.||-.++-
T Consensus 141 ~~~~-~~~Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~ 207 (297)
T COG3315 141 PPAH-RRLVAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAF 207 (297)
T ss_pred CCce-EEEEeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEE
Confidence 235 9999999984321 2455678888776676666667788888777777766553
No 346
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=71.00 E-value=12 Score=40.55 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=33.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCC----ccEEEEEeCCHHHHH
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANR----KVRVYAVEKNMSAVV 384 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~----~~~V~AVE~np~a~~ 384 (626)
...++++|+|+|.|+.-.++...+... ..+++-||.|+....
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~ 123 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRA 123 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHH
Confidence 457999999999999888888755431 369999999997663
No 347
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=70.99 E-value=22 Score=35.67 Aligned_cols=74 Identities=16% Similarity=0.058 Sum_probs=41.5
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC-------------------HHHHHHHHHHHHcCCCCCcEEEEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN-------------------MSAVVGLKYKKEEQWAQSDVTIVS 403 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n-------------------p~a~~a~~~~~~n~~~~~nV~vi~ 403 (626)
..+|+.+|||- ++...+....+.|. .+++.+|.+ +.+..+.+.+.+-.-.- +|+.+.
T Consensus 28 ~~~V~ViG~Gg--lGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v-~v~~~~ 103 (212)
T PRK08644 28 KAKVGIAGAGG--LGSNIAVALARSGV-GNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFV-EIEAHN 103 (212)
T ss_pred CCCEEEECcCH--HHHHHHHHHHHcCC-CeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCC-EEEEEe
Confidence 46899999983 33333455555665 478888877 23443344333322222 366666
Q ss_pred ecccccCC---CCCccEEEe
Q psy17734 404 EDMRTWNA---PEKADIMVS 420 (626)
Q Consensus 404 ~D~~~~~~---p~k~DiIVS 420 (626)
....+-.. -..+|+||.
T Consensus 104 ~~i~~~~~~~~~~~~DvVI~ 123 (212)
T PRK08644 104 EKIDEDNIEELFKDCDIVVE 123 (212)
T ss_pred eecCHHHHHHHHcCCCEEEE
Confidence 55443211 157899986
No 348
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=70.69 E-value=9.3 Score=40.80 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-------APE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-------~p~ 413 (626)
++.+++|.=-|.|.-+...+.+... .+|+|+|.+|.|+ .+.+.+. .+.++ +++++++..++. ...
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~----~~li~~DrD~~a~~~a~~~l~--~~~~r-~~~~~~~F~~l~~~l~~~~~~~ 92 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPN----GRLIGIDRDPEALERAKERLK--KFDDR-FIFIHGNFSNLDEYLKELNGIN 92 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-----EEEEEES-HHHHHHHHCCTC--CCCTT-EEEEES-GGGHHHHHHHTTTTS
T ss_pred CCceEEeecCCcHHHHHHHHHhCCC----CeEEEecCCHHHHHHHHHHHh--hccce-EEEEeccHHHHHHHHHHccCCC
Confidence 5679999999999999877765542 5999999999998 4444332 34666 999999988763 225
Q ss_pred CccEEEecc
Q psy17734 414 KADIMVSEL 422 (626)
Q Consensus 414 k~DiIVSEl 422 (626)
++|-|+.++
T Consensus 93 ~~dgiL~DL 101 (310)
T PF01795_consen 93 KVDGILFDL 101 (310)
T ss_dssp -EEEEEEE-
T ss_pred ccCEEEEcc
Confidence 788887765
No 349
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=70.36 E-value=13 Score=42.00 Aligned_cols=88 Identities=20% Similarity=0.245 Sum_probs=54.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
..+++|+.+|+|. .+..+++.++..|+ +|+++|.++.... +.. ..+ +++. ++.+.- ..+|+||.
T Consensus 252 LaGKtVgVIG~G~--IGr~vA~rL~a~Ga--~ViV~e~dp~~a~--~A~-~~G-----~~~~--~leell--~~ADIVI~ 315 (476)
T PTZ00075 252 IAGKTVVVCGYGD--VGKGCAQALRGFGA--RVVVTEIDPICAL--QAA-MEG-----YQVV--TLEDVV--ETADIFVT 315 (476)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHHHCCC--EEEEEeCCchhHH--HHH-hcC-----ceec--cHHHHH--hcCCEEEE
Confidence 3678999999986 77666777766774 8999999874321 111 122 3222 333321 57899987
Q ss_pred ccccccCCCCCcHHHHH-HHHHhcccCcEEEec
Q psy17734 421 ELLGSFGDNELSPECLY-AAQKYLKEDGISIPY 452 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~-~~~r~LkpgGi~IP~ 452 (626)
-. | .+.++. ..-..+|||++++--
T Consensus 316 at-G-------t~~iI~~e~~~~MKpGAiLINv 340 (476)
T PTZ00075 316 AT-G-------NKDIITLEHMRRMKNNAIVGNI 340 (476)
T ss_pred CC-C-------cccccCHHHHhccCCCcEEEEc
Confidence 32 1 122443 344568999998864
No 350
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=70.19 E-value=15 Score=39.72 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCH----------------------HHHHHHHHHHHcCCCCCcE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNM----------------------SAVVGLKYKKEEQWAQSDV 399 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np----------------------~a~~a~~~~~~n~~~~~nV 399 (626)
..++|+.+|||. ++..++....+.|. .+++.||.+. .+..+.+.+++-.-.- +|
T Consensus 23 ~~~~VlIiG~Gg--lGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v-~i 98 (338)
T PRK12475 23 REKHVLIVGAGA--LGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEV-EI 98 (338)
T ss_pred cCCcEEEECCCH--HHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCc-EE
Confidence 357899999984 55555566566675 4888888763 3343444443322112 36
Q ss_pred EEEEecccccC---CCCCccEEEe
Q psy17734 400 TIVSEDMRTWN---APEKADIMVS 420 (626)
Q Consensus 400 ~vi~~D~~~~~---~p~k~DiIVS 420 (626)
+.+..+...-. .-..+|+||.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid 122 (338)
T PRK12475 99 VPVVTDVTVEELEELVKEVDLIID 122 (338)
T ss_pred EEEeccCCHHHHHHHhcCCCEEEE
Confidence 66766654211 1257999987
No 351
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=69.99 E-value=12 Score=40.24 Aligned_cols=90 Identities=23% Similarity=0.174 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc-------cccCCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM-------RTWNAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~-------~~~~~p~k 414 (626)
++.+||..|+ |.++..+++.++..|.+ +|++++.++.-....+. .+. -.++..+- .+.. ...
T Consensus 186 ~g~~vlI~g~--g~vG~~~~~la~~~G~~-~v~~~~~~~~k~~~~~~---~g~----~~~i~~~~~~~~~~v~~~~-~~~ 254 (365)
T cd08278 186 PGSSIAVFGA--GAVGLAAVMAAKIAGCT-TIIAVDIVDSRLELAKE---LGA----THVINPKEEDLVAAIREIT-GGG 254 (365)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHH---cCC----cEEecCCCcCHHHHHHHHh-CCC
Confidence 4678888864 67888888888888853 79999998754322221 121 12222211 1122 356
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+|+++-- .| .+..+..+.+.|+++|.++
T Consensus 255 ~d~vld~-~g-------~~~~~~~~~~~l~~~G~~v 282 (365)
T cd08278 255 VDYALDT-TG-------VPAVIEQAVDALAPRGTLA 282 (365)
T ss_pred CcEEEEC-CC-------CcHHHHHHHHHhccCCEEE
Confidence 8988752 11 1335667778899999877
No 352
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=69.84 E-value=27 Score=37.54 Aligned_cols=95 Identities=20% Similarity=0.190 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec------ccccCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED------MRTWNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D------~~~~~~p~k~ 415 (626)
++.+||..|+ |.++.++++.++..|. .+|++++.++.-....+. .+.... +.....+ +.+... ..+
T Consensus 184 ~g~~vlV~G~--g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~~~~---~ga~~~-i~~~~~~~~~~~~~~~~~~-~g~ 255 (365)
T cd08277 184 PGSTVAVFGL--GAVGLSAIMGAKIAGA-SRIIGVDINEDKFEKAKE---FGATDF-INPKDSDKPVSEVIREMTG-GGV 255 (365)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH---cCCCcE-eccccccchHHHHHHHHhC-CCC
Confidence 5678999975 7888888888888785 279999998744322222 222111 1111100 111122 468
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEEec
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKED-GISIPY 452 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~IP~ 452 (626)
|+++- ..| .+..+..+.+.|+++ |.++--
T Consensus 256 d~vid-~~g-------~~~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 256 DYSFE-CTG-------NADLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred CEEEE-CCC-------ChHHHHHHHHhcccCCCEEEEE
Confidence 98874 222 134566666778775 877643
No 353
>PRK05854 short chain dehydrogenase; Provisional
Probab=69.80 E-value=35 Score=35.98 Aligned_cols=77 Identities=12% Similarity=0.118 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHH-HHHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSA-VVGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a-~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
++++++..|++.| ++..+++...+.| .+|+.+..++.. ..+.+.+....-+.+ ++++..|+.+...
T Consensus 13 ~gk~~lITGas~G-IG~~~a~~La~~G--~~Vil~~R~~~~~~~~~~~l~~~~~~~~-v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 13 SGKRAVVTGASDG-LGLGLARRLAAAG--AEVILPVRNRAKGEAAVAAIRTAVPDAK-LSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred CCCEEEEeCCCCh-HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCc-eEEEEecCCCHHHHHHHHHHHH
Confidence 5678999998765 4555555555556 488888888643 233333332221234 9999999987531
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
..++|++|..-
T Consensus 89 ~~~~~iD~li~nA 101 (313)
T PRK05854 89 AEGRPIHLLINNA 101 (313)
T ss_pred HhCCCccEEEECC
Confidence 25789998753
No 354
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=69.63 E-value=31 Score=36.42 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc----------cccCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM----------RTWNA 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~----------~~~~~ 411 (626)
++.+||..|+ |.++.++++.++..|.+ .|+++..++......+.. +.. .++..+- .+...
T Consensus 162 ~g~~vlI~g~--g~vG~~a~~lak~~G~~-~v~~~~~~~~~~~~~~~~---g~~----~vi~~~~~~~~~~~~~~~~~~~ 231 (343)
T cd05285 162 PGDTVLVFGA--GPIGLLTAAVAKAFGAT-KVVVTDIDPSRLEFAKEL---GAT----HTVNVRTEDTPESAEKIAELLG 231 (343)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCc-EEEEECCCHHHHHHHHHc---CCc----EEeccccccchhHHHHHHHHhC
Confidence 5678888664 67888888888888852 389998876433222221 221 1222111 11222
Q ss_pred CCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 412 PEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 412 p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..++|+++.- .| ....+....+.|+++|.++
T Consensus 232 ~~~~d~vld~-~g-------~~~~~~~~~~~l~~~G~~v 262 (343)
T cd05285 232 GKGPDVVIEC-TG-------AESCIQTAIYATRPGGTVV 262 (343)
T ss_pred CCCCCEEEEC-CC-------CHHHHHHHHHHhhcCCEEE
Confidence 2469999862 11 1225566677899999877
No 355
>PRK09291 short chain dehydrogenase; Provisional
Probab=69.29 E-value=29 Score=34.73 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=46.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcCCCCCcEEEEEecccccC-----CCCCccE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVSEDMRTWN-----APEKADI 417 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~~~~~nV~vi~~D~~~~~-----~p~k~Di 417 (626)
++||+.|++ |.++..+++.....| .+|+++..++...... ...... +.. ++++.+|+.+.. ...++|+
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~--~~~-~~~~~~D~~~~~~~~~~~~~~id~ 76 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKG--HNVIAGVQIAPQVTALRAEAARR--GLA-LRVEKLDLTDAIDRAQAAEWDVDV 76 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhc--CCc-ceEEEeeCCCHHHHHHHhcCCCCE
Confidence 478999984 556666666666566 4899998876433222 222222 234 899999987743 1247999
Q ss_pred EEec
Q psy17734 418 MVSE 421 (626)
Q Consensus 418 IVSE 421 (626)
+|..
T Consensus 77 vi~~ 80 (257)
T PRK09291 77 LLNN 80 (257)
T ss_pred EEEC
Confidence 9874
No 356
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=69.28 E-value=15 Score=38.62 Aligned_cols=93 Identities=24% Similarity=0.357 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec----ccccCCCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED----MRTWNAPEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D----~~~~~~p~k~Di 417 (626)
++.+||..|+ |.++.++++.++..| .+|+++..++.....++. .+.... +.....+ +........+|+
T Consensus 159 ~g~~vLI~g~--g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~---~g~~~v-~~~~~~~~~~~l~~~~~~~~vd~ 230 (337)
T cd08261 159 AGDTVLVVGA--GPIGLGVIQVAKARG--ARVIVVDIDDERLEFARE---LGADDT-INVGDEDVAARLRELTDGEGADV 230 (337)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHH---hCCCEE-ecCcccCHHHHHHHHhCCCCCCE
Confidence 5678899875 578888888888777 489999877643322222 222111 1111111 111112245899
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
++.- .+ ....+..+.+.|+++|.++
T Consensus 231 vld~----~g----~~~~~~~~~~~l~~~G~~i 255 (337)
T cd08261 231 VIDA----TG----NPASMEEAVELVAHGGRVV 255 (337)
T ss_pred EEEC----CC----CHHHHHHHHHHHhcCCEEE
Confidence 9862 11 1345666677889999876
No 357
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=69.02 E-value=43 Score=35.34 Aligned_cols=95 Identities=19% Similarity=0.225 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec----ccccCCCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED----MRTWNAPEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D----~~~~~~p~k~Di 417 (626)
++.+||..|+ |.++.++++.++..|. .+|++++.++......+. -+.... +.....+ +.++.....+|+
T Consensus 166 ~g~~vlI~g~--g~~g~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~---~g~~~~-v~~~~~~~~~~i~~~~~~~~~d~ 238 (345)
T cd08286 166 PGDTVAIVGA--GPVGLAALLTAQLYSP-SKIIMVDLDDNRLEVAKK---LGATHT-VNSAKGDAIEQVLELTDGRGVDV 238 (345)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH---hCCCce-eccccccHHHHHHHHhCCCCCCE
Confidence 4677888764 7888888888887774 378899888744322221 222111 2211111 111222246999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
++.-. | .+..++.+.+.|+++|.++-
T Consensus 239 vld~~-g-------~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 239 VIEAV-G-------IPATFELCQELVAPGGHIAN 264 (345)
T ss_pred EEECC-C-------CHHHHHHHHHhccCCcEEEE
Confidence 87522 1 23456667788999998874
No 358
>PRK06914 short chain dehydrogenase; Provisional
Probab=68.99 E-value=26 Score=35.80 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC----------
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA---------- 411 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------- 411 (626)
++++|..|++. .++..+++.....| .+|+++..++... ...+.....+.+.+ ++++.+|+.+.+.
T Consensus 3 ~k~~lItGasg-~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~d~~~~~~~~~~~~~ 78 (280)
T PRK06914 3 KKIAIVTGASS-GFGLLTTLELAKKG--YLVIATMRNPEKQENLLSQATQLNLQQN-IKVQQLDVTDQNSIHNFQLVLKE 78 (280)
T ss_pred CCEEEEECCCc-hHHHHHHHHHHhCC--CEEEEEeCCHHHHHHHHHHHHhcCCCCc-eeEEecCCCCHHHHHHHHHHHHh
Confidence 35789999654 45555555544445 5899998887544 22222222333345 9999999987431
Q ss_pred CCCccEEEec
Q psy17734 412 PEKADIMVSE 421 (626)
Q Consensus 412 p~k~DiIVSE 421 (626)
-.++|++|..
T Consensus 79 ~~~id~vv~~ 88 (280)
T PRK06914 79 IGRIDLLVNN 88 (280)
T ss_pred cCCeeEEEEC
Confidence 1467988875
No 359
>PRK07326 short chain dehydrogenase; Provisional
Probab=68.75 E-value=26 Score=34.64 Aligned_cols=73 Identities=11% Similarity=0.092 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
.+++|+..|+ +|.++..+++.....| .+|++++.++... ...+.+... .+ ++++.+|+.+...
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~~l~~~---~~-~~~~~~D~~~~~~~~~~~~~~~ 77 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEG--YKVAITARDQKELEEAAAELNNK---GN-VLGLAADVRDEADVQRAVDAIV 77 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCC--CEEEEeeCCHHHHHHHHHHHhcc---Cc-EEEEEccCCCHHHHHHHHHHHH
Confidence 3578999996 6677766666665556 4899999887443 223332221 34 9999999876431
Q ss_pred --CCCccEEEec
Q psy17734 412 --PEKADIMVSE 421 (626)
Q Consensus 412 --p~k~DiIVSE 421 (626)
..++|+||..
T Consensus 78 ~~~~~~d~vi~~ 89 (237)
T PRK07326 78 AAFGGLDVLIAN 89 (237)
T ss_pred HHcCCCCEEEEC
Confidence 1378998864
No 360
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=68.42 E-value=25 Score=35.34 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------- 411 (626)
+++++|..|++.| ++..+++...+.| .+|+.++.++......+.+... +.+ +.++.+|+.+...
T Consensus 7 ~~k~vlVtGas~g-IG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~--~~~-~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK12823 7 AGKVVVVTGAAQG-IGRGVALRAAAEG--ARVVLVDRSELVHEVAAELRAA--GGE-ALALTADLETYAGAQAAMAAAVE 80 (260)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCC--CEEEEEeCchHHHHHHHHHHhc--CCe-EEEEEEeCCCHHHHHHHHHHHHH
Confidence 4578999997655 4544455554456 4899999886433222222222 234 8889999887531
Q ss_pred -CCCccEEEecc
Q psy17734 412 -PEKADIMVSEL 422 (626)
Q Consensus 412 -p~k~DiIVSEl 422 (626)
..++|++|..-
T Consensus 81 ~~~~id~lv~nA 92 (260)
T PRK12823 81 AFGRIDVLINNV 92 (260)
T ss_pred HcCCCeEEEECC
Confidence 14689998754
No 361
>PRK08703 short chain dehydrogenase; Provisional
Probab=68.38 E-value=31 Score=34.29 Aligned_cols=76 Identities=20% Similarity=0.087 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN---------- 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~---------- 410 (626)
++++|+..|| +|.++..+++...+.| .+|++++.++... ...+.+...+ ... +.++..|+.+..
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g--~~V~~~~r~~~~~~~~~~~l~~~~-~~~-~~~~~~D~~~~~~~~~~~~~~~ 79 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAG--ATVILVARHQKKLEKVYDAIVEAG-HPE-PFAIRFDLMSAEEKEFEQFAAT 79 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcC--CEEEEEeCChHHHHHHHHHHHHcC-CCC-cceEEeeecccchHHHHHHHHH
Confidence 4578999996 5566666666655556 4899999987543 2222222222 223 667777765321
Q ss_pred ----CCCCccEEEecc
Q psy17734 411 ----APEKADIMVSEL 422 (626)
Q Consensus 411 ----~p~k~DiIVSEl 422 (626)
...++|+||..-
T Consensus 80 i~~~~~~~id~vi~~a 95 (239)
T PRK08703 80 IAEATQGKLDGIVHCA 95 (239)
T ss_pred HHHHhCCCCCEEEEec
Confidence 114678887643
No 362
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=68.05 E-value=30 Score=34.86 Aligned_cols=75 Identities=17% Similarity=0.114 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|..|+ +|.++..+++...+.| .+|+.++.++... ...+.+... +.+ +.++.+|+.+...
T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~i~~~--~~~-~~~~~~Dl~d~~~i~~~~~~~~ 84 (259)
T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAG--ARVVLSARKAEELEEAAAHLEAL--GID-ALWIAADVADEADIERLAEETL 84 (259)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhc--CCe-EEEEEccCCCHHHHHHHHHHHH
Confidence 4678999995 5666766665555556 4899999886433 333333322 234 8889999987431
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|.+|..-
T Consensus 85 ~~~~~id~vi~~a 97 (259)
T PRK08213 85 ERFGHVDILVNNA 97 (259)
T ss_pred HHhCCCCEEEECC
Confidence 14689998853
No 363
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=68.03 E-value=72 Score=33.21 Aligned_cols=146 Identities=19% Similarity=0.168 Sum_probs=83.2
Q ss_pred hhhcchhhHHHHhhCCHHHHH-HHHHHHHHHHhhccCCCcCCCCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeC
Q psy17734 300 LANDLSSFTYEVFEKDPIKYI-RYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEK 378 (626)
Q Consensus 300 l~dnL~s~tYe~fe~D~~ry~-~Y~~AI~~al~d~~~~~~~~~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~ 378 (626)
..|+..|..++..-.=|.-|- .-+.+|.++...-+.. ..+....+++|+|+-.=+.+++.|.+..|...+.+.||+
T Consensus 38 FYD~~GS~LFe~I~~LPEYYpTRtEaaIl~~~a~Eia~---~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv 114 (321)
T COG4301 38 FYDDRGSELFEQITRLPEYYPTRTEAAILQARAAEIAS---ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDV 114 (321)
T ss_pred eecccHHHHHHHHhccccccCchhHHHHHHHHHHHHHH---hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecc
Confidence 345566666554433333331 1234454443221110 124578999999999999988999887665568999999
Q ss_pred CHHHH-HHHHHHHHcCCCCCcEEEEEeccccc--CCCCCccEEEeccccccCCCCCcHH---HHHHHHHhcccCcEEE
Q psy17734 379 NMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTW--NAPEKADIMVSELLGSFGDNELSPE---CLYAAQKYLKEDGISI 450 (626)
Q Consensus 379 np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~--~~p~k~DiIVSEllgsfg~~El~pe---~L~~~~r~LkpgGi~I 450 (626)
+.... .+.+.+....-+-. |.-+.+|.+.- .+|..---++. .+||-+.|-...+ +|..+...|+||-.++
T Consensus 115 ~a~iL~~ta~ai~~~y~~l~-v~~l~~~~~~~La~~~~~~~Rl~~-flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~L 190 (321)
T COG4301 115 SASILRATATAILREYPGLE-VNALCGDYELALAELPRGGRRLFV-FLGSTLGNLTPGECAVFLTQLRGALRPGDYFL 190 (321)
T ss_pred cHHHHHHHHHHHHHhCCCCe-EeehhhhHHHHHhcccCCCeEEEE-EecccccCCChHHHHHHHHHHHhcCCCcceEE
Confidence 98655 44444444333222 77778887642 12322222222 3566655544334 4566667788886654
No 364
>PRK13699 putative methylase; Provisional
Probab=67.55 E-value=13 Score=37.78 Aligned_cols=42 Identities=21% Similarity=0.151 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYK 389 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~ 389 (626)
++.+|||--||+|.-+. ||.+.|+ +.+|+|+++.-. .+.+.+
T Consensus 163 ~g~~vlDpf~Gsgtt~~----aa~~~~r--~~~g~e~~~~y~~~~~~r~ 205 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCV----AALQSGR--RYIGIELLEQYHRAGQQRL 205 (227)
T ss_pred CCCEEEeCCCCCCHHHH----HHHHcCC--CEEEEecCHHHHHHHHHHH
Confidence 56799999999999874 5555664 899999999665 554444
No 365
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=67.31 E-value=33 Score=37.25 Aligned_cols=91 Identities=15% Similarity=0.137 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEE-ecccccC-CCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVS-EDMRTWN-APEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~-~D~~~~~-~p~k~DiIV 419 (626)
++.+|+..|+ |.++.++++.++..|+ +|++++.++... ++..+..|.. . ++. .+.+.+. ....+|+++
T Consensus 178 ~g~~VlV~G~--G~vG~~avq~Ak~~Ga--~Vi~~~~~~~~~--~~~a~~lGa~---~-~i~~~~~~~v~~~~~~~D~vi 247 (375)
T PLN02178 178 SGKRLGVNGL--GGLGHIAVKIGKAFGL--RVTVISRSSEKE--REAIDRLGAD---S-FLVTTDSQKMKEAVGTMDFII 247 (375)
T ss_pred CCCEEEEEcc--cHHHHHHHHHHHHcCC--eEEEEeCChHHh--HHHHHhCCCc---E-EEcCcCHHHHHHhhCCCcEEE
Confidence 4678888876 6899888898888885 799998875331 1111122221 1 221 1111110 112588887
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
- ..| .+..+..+.+.|+++|.++
T Consensus 248 d-~~G-------~~~~~~~~~~~l~~~G~iv 270 (375)
T PLN02178 248 D-TVS-------AEHALLPLFSLLKVSGKLV 270 (375)
T ss_pred E-CCC-------cHHHHHHHHHhhcCCCEEE
Confidence 4 222 2345666667899999876
No 366
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=67.18 E-value=7.2 Score=41.62 Aligned_cols=65 Identities=17% Similarity=0.164 Sum_probs=43.7
Q ss_pred EEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC--CCccEEEecc
Q psy17734 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP--EKADIMVSEL 422 (626)
Q Consensus 346 VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p--~k~DiIVSEl 422 (626)
|+|+-||-|.++.-+-+ +|. ..|.|+|.++.|..+.+. | +. + +++.+|++++... ..+|+++.-+
T Consensus 1 vidLF~G~GG~~~Gl~~----aG~-~~~~a~e~~~~a~~ty~~---N-~~--~-~~~~~Di~~~~~~~~~~~dvl~gg~ 67 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQ----AGF-KCVFASEIDKYAQKTYEA---N-FG--N-KVPFGDITKISPSDIPDFDILLGGF 67 (315)
T ss_pred CEEEecCccHHHHHHHH----cCC-eEEEEEeCCHHHHHHHHH---h-CC--C-CCCccChhhhhhhhCCCcCEEEecC
Confidence 58999999999854333 343 257789999988755443 1 22 2 3456888887632 3689997754
No 367
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=67.10 E-value=13 Score=39.81 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC---C-CccEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP---E-KADIM 418 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p---~-k~DiI 418 (626)
..+++|+-||-|.+.+-+-.|+ . .-+.|+|.++.|..+.+.. . . .-.++.+|++++... . ++|++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag----f-~~~~a~Eid~~a~~ty~~n---~-~--~~~~~~~di~~~~~~~~~~~~~Dvl 71 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG----F-EIVFANEIDPPAVATYKAN---F-P--HGDIILGDIKELDGEALRKSDVDVL 71 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC----C-eEEEEEecCHHHHHHHHHh---C-C--CCceeechHhhcChhhccccCCCEE
Confidence 3579999999999985433333 3 3789999999888555432 1 1 145677888877643 2 79999
Q ss_pred Eecc
Q psy17734 419 VSEL 422 (626)
Q Consensus 419 VSEl 422 (626)
+.-.
T Consensus 72 igGp 75 (328)
T COG0270 72 IGGP 75 (328)
T ss_pred EeCC
Confidence 8854
No 368
>PRK08303 short chain dehydrogenase; Provisional
Probab=67.10 E-value=23 Score=37.27 Aligned_cols=75 Identities=17% Similarity=0.128 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCH----------H-HHHHHHHHHHcCCCCCcEEEEEecccccC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNM----------S-AVVGLKYKKEEQWAQSDVTIVSEDMRTWN 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np----------~-a~~a~~~~~~n~~~~~nV~vi~~D~~~~~ 410 (626)
+++++|..|+++| ++..++++..+.| .+|+.++.+. . .....+.+.. .+.+ +.++.+|+.+..
T Consensus 7 ~~k~~lITGgs~G-IG~aia~~la~~G--~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~--~~~~-~~~~~~Dv~~~~ 80 (305)
T PRK08303 7 RGKVALVAGATRG-AGRGIAVELGAAG--ATVYVTGRSTRARRSEYDRPETIEETAELVTA--AGGR-GIAVQVDHLVPE 80 (305)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCC--CEEEEEecccccccccccccchHHHHHHHHHh--cCCc-eEEEEcCCCCHH
Confidence 4679999998877 5555566666566 4888887762 1 1122222222 2344 888999988753
Q ss_pred C-----------CCCccEEEecc
Q psy17734 411 A-----------PEKADIMVSEL 422 (626)
Q Consensus 411 ~-----------p~k~DiIVSEl 422 (626)
. -+++|++|..-
T Consensus 81 ~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 81 QVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHHHcCCccEEEECC
Confidence 1 15799999875
No 369
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=67.02 E-value=22 Score=37.22 Aligned_cols=76 Identities=7% Similarity=0.010 Sum_probs=46.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC----CCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~D 416 (626)
.+++||..| |+|.++..+++.....| .+|+++..++... .........+...+ ++++.+|+++... -.++|
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~d~~~~~~~~~~~d 79 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRG--YTINATVRDPKDRKKTDHLLALDGAKER-LKLFKADLLDEGSFELAIDGCE 79 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCC--CEEEEEEcCCcchhhHHHHHhccCCCCc-eEEEeCCCCCchHHHHHHcCCC
Confidence 457899998 57888877777666556 4777766554221 11111111222234 9999999987642 14689
Q ss_pred EEEec
Q psy17734 417 IMVSE 421 (626)
Q Consensus 417 iIVSE 421 (626)
+||.-
T Consensus 80 ~vih~ 84 (325)
T PLN02989 80 TVFHT 84 (325)
T ss_pred EEEEe
Confidence 98773
No 370
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=66.99 E-value=19 Score=37.94 Aligned_cols=91 Identities=22% Similarity=0.269 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc-------cccCCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM-------RTWNAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~-------~~~~~p~k 414 (626)
++.+||..|+ |.++.++++.++..|. .+|++++.++.....++ ..+. -.++..+- ........
T Consensus 167 ~~~~VlI~g~--g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~---~~g~----~~vi~~~~~~~~~~i~~~~~~~~ 236 (347)
T cd05278 167 PGSTVAVIGA--GPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAK---EAGA----TDIINPKNGDIVEQILELTGGRG 236 (347)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHH---HhCC----cEEEcCCcchHHHHHHHHcCCCC
Confidence 4678888553 7788888888887774 27889977764332222 2232 12232221 11222256
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+|+++.- .| ....+....+.|+++|.++
T Consensus 237 ~d~vld~-~g-------~~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 237 VDCVIEA-VG-------FEETFEQAVKVVRPGGTIA 264 (347)
T ss_pred CcEEEEc-cC-------CHHHHHHHHHHhhcCCEEE
Confidence 8988752 11 1235666678899999877
No 371
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=66.96 E-value=19 Score=38.89 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=42.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC----------------------HHHHHHHHHHHH-cCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN----------------------MSAVVGLKYKKE-EQWAQSD 398 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n----------------------p~a~~a~~~~~~-n~~~~~n 398 (626)
...+|+.+|||. ++..++......|. .+++.||.+ +.+..+.+.+++ |.. .+
T Consensus 23 ~~~~VlVvG~Gg--lGs~va~~La~aGv-g~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~--v~ 97 (339)
T PRK07688 23 REKHVLIIGAGA--LGTANAEMLVRAGV-GKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSD--VR 97 (339)
T ss_pred cCCcEEEECCCH--HHHHHHHHHHHcCC-CeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCC--cE
Confidence 347899999983 44444455555665 489999976 233433333332 321 13
Q ss_pred EEEEEecccccC---CCCCccEEEe
Q psy17734 399 VTIVSEDMRTWN---APEKADIMVS 420 (626)
Q Consensus 399 V~vi~~D~~~~~---~p~k~DiIVS 420 (626)
|+.+..+...-. .-..+|+||.
T Consensus 98 v~~~~~~~~~~~~~~~~~~~DlVid 122 (339)
T PRK07688 98 VEAIVQDVTAEELEELVTGVDLIID 122 (339)
T ss_pred EEEEeccCCHHHHHHHHcCCCEEEE
Confidence 666666654321 1257999987
No 372
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=66.94 E-value=16 Score=40.01 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEe---cc----cccCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSE---DM----RTWNAPE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~---D~----~~~~~p~ 413 (626)
++.+||..|+ |+++.++++.++..|.+ .|+++|.++.-. .+++ -+. . . +... +. .+.....
T Consensus 185 ~g~~VlV~G~--G~iG~~aiqlAk~~Ga~-~vi~~d~~~~r~~~a~~----~Ga--~-~-v~~~~~~~~~~~v~~~~~~~ 253 (393)
T TIGR02819 185 PGSTVYIAGA--GPVGLAAAASAQLLGAA-VVIVGDLNPARLAQARS----FGC--E-T-VDLSKDATLPEQIEQILGEP 253 (393)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCc-eEEEeCCCHHHHHHHHH----cCC--e-E-EecCCcccHHHHHHHHcCCC
Confidence 4678888655 68998888888888863 566778876433 3222 232 1 1 2211 11 1111224
Q ss_pred CccEEEeccccccC-------CCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 414 KADIMVSELLGSFG-------DNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 414 k~DiIVSEllgsfg-------~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
.+|+++- ..|.-. .-+..+..++.+.+.++++|.++-
T Consensus 254 g~Dvvid-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 254 EVDCAVD-CVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred CCcEEEE-CCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 6898874 333210 011123467777789999998764
No 373
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=66.75 E-value=26 Score=37.47 Aligned_cols=98 Identities=16% Similarity=0.245 Sum_probs=64.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCC-CCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p-~k~DiIVS 420 (626)
....|..+|.|. .+.-+++.+.-.| ..|+-+|.|..-...+. .-++.+ |+++...+.+++.. .++|++|.
T Consensus 167 ~~~kv~iiGGGv--vgtnaAkiA~glg--A~Vtild~n~~rl~~ld----d~f~~r-v~~~~st~~~iee~v~~aDlvIg 237 (371)
T COG0686 167 LPAKVVVLGGGV--VGTNAAKIAIGLG--ADVTILDLNIDRLRQLD----DLFGGR-VHTLYSTPSNIEEAVKKADLVIG 237 (371)
T ss_pred CCccEEEECCcc--ccchHHHHHhccC--CeeEEEecCHHHHhhhh----HhhCce-eEEEEcCHHHHHHHhhhccEEEE
Confidence 445688899875 4444466665556 49999999975443222 234566 99999888877643 68999998
Q ss_pred ccccccCCCCCcHHH-HHHHHHhcccCcEEEe
Q psy17734 421 ELLGSFGDNELSPEC-LYAAQKYLKEDGISIP 451 (626)
Q Consensus 421 Ellgsfg~~El~pe~-L~~~~r~LkpgGi~IP 451 (626)
-.+-- .+..|.. .+...+.+|||+++|=
T Consensus 238 aVLIp---gakaPkLvt~e~vk~MkpGsVivD 266 (371)
T COG0686 238 AVLIP---GAKAPKLVTREMVKQMKPGSVIVD 266 (371)
T ss_pred EEEec---CCCCceehhHHHHHhcCCCcEEEE
Confidence 55421 2233443 4556788999988763
No 374
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=66.73 E-value=21 Score=34.52 Aligned_cols=109 Identities=17% Similarity=0.121 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
-.+++|..+|+|. ++...++.++..| .+|++++.+....... ... .++. .+++++- .+.|+|+.
T Consensus 34 l~g~tvgIiG~G~--IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~---~~~-----~~~~--~~l~ell--~~aDiv~~ 97 (178)
T PF02826_consen 34 LRGKTVGIIGYGR--IGRAVARRLKAFG--MRVIGYDRSPKPEEGA---DEF-----GVEY--VSLDELL--AQADIVSL 97 (178)
T ss_dssp STTSEEEEESTSH--HHHHHHHHHHHTT---EEEEEESSCHHHHHH---HHT-----TEEE--SSHHHHH--HH-SEEEE
T ss_pred cCCCEEEEEEEcC--CcCeEeeeeecCC--ceeEEecccCChhhhc---ccc-----ccee--eehhhhc--chhhhhhh
Confidence 3678999999865 7777788888788 4999999987544311 111 1322 2444432 46899988
Q ss_pred ccccccCCCCCcHHHHH-HHHHhcccCcEEEeccceeeEEeccChHhHHHHhh
Q psy17734 421 ELLGSFGDNELSPECLY-AAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKS 472 (626)
Q Consensus 421 Ellgsfg~~El~pe~L~-~~~r~LkpgGi~IP~~~t~y~api~s~~l~~~~~~ 472 (626)
-+...-- .+. +++ ..-..+|+|.++|-- .....|....|.+.+.+
T Consensus 98 ~~plt~~-T~~---li~~~~l~~mk~ga~lvN~---aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 98 HLPLTPE-TRG---LINAEFLAKMKPGAVLVNV---ARGELVDEDALLDALES 143 (178)
T ss_dssp -SSSSTT-TTT---SBSHHHHHTSTTTEEEEES---SSGGGB-HHHHHHHHHT
T ss_pred hhccccc-cce---eeeeeeeeccccceEEEec---cchhhhhhhHHHHHHhh
Confidence 5543211 111 222 223468888888853 23455666667665543
No 375
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=66.70 E-value=40 Score=30.03 Aligned_cols=94 Identities=15% Similarity=0.093 Sum_probs=55.5
Q ss_pred HHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc-------cCCCCCccEEEeccccccCCC
Q psy17734 357 VTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT-------WNAPEKADIMVSELLGSFGDN 429 (626)
Q Consensus 357 s~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~-------~~~p~k~DiIVSEllgsfg~~ 429 (626)
+.++++.++..| .+|++++.++.-....+ +.|- -.++..+-.+ +.....+|+++- ..
T Consensus 3 G~~a~q~ak~~G--~~vi~~~~~~~k~~~~~---~~Ga----~~~~~~~~~~~~~~i~~~~~~~~~d~vid-~~------ 66 (130)
T PF00107_consen 3 GLMAIQLAKAMG--AKVIATDRSEEKLELAK---ELGA----DHVIDYSDDDFVEQIRELTGGRGVDVVID-CV------ 66 (130)
T ss_dssp HHHHHHHHHHTT--SEEEEEESSHHHHHHHH---HTTE----SEEEETTTSSHHHHHHHHTTTSSEEEEEE-SS------
T ss_pred HHHHHHHHHHcC--CEEEEEECCHHHHHHHH---hhcc----cccccccccccccccccccccccceEEEE-ec------
Confidence 444567777777 59999999985542222 2331 2233332222 222247999874 22
Q ss_pred CCcHHHHHHHHHhcccCcEEEecccee-eEEeccChHhH
Q psy17734 430 ELSPECLYAAQKYLKEDGISIPYNYTS-YIAPIMSHKLF 467 (626)
Q Consensus 430 El~pe~L~~~~r~LkpgGi~IP~~~t~-y~api~s~~l~ 467 (626)
..++.++...+.|+++|.++--.... .-.++....++
T Consensus 67 -g~~~~~~~~~~~l~~~G~~v~vg~~~~~~~~~~~~~~~ 104 (130)
T PF00107_consen 67 -GSGDTLQEAIKLLRPGGRIVVVGVYGGDPISFNLMNLM 104 (130)
T ss_dssp -SSHHHHHHHHHHEEEEEEEEEESSTSTSEEEEEHHHHH
T ss_pred -CcHHHHHHHHHHhccCCEEEEEEccCCCCCCCCHHHHH
Confidence 23678888889999999887665554 44444444443
No 376
>PRK06128 oxidoreductase; Provisional
Probab=66.58 E-value=61 Score=33.71 Aligned_cols=75 Identities=13% Similarity=0.058 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHH---HHHHHHHHHHcCCCCCcEEEEEecccccCC-------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMS---AVVGLKYKKEEQWAQSDVTIVSEDMRTWNA------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~---a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~------- 411 (626)
++++||..|++. .++..+++...+.|. +|+.+..+.. +....+.+... +.+ +.++.+|+.+...
T Consensus 54 ~~k~vlITGas~-gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~Dl~~~~~v~~~~~~ 127 (300)
T PRK06128 54 QGRKALITGADS-GIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAE--GRK-AVALPGDLKDEAFCRQLVER 127 (300)
T ss_pred CCCEEEEecCCC-cHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHc--CCe-EEEEecCCCCHHHHHHHHHH
Confidence 457899999755 455555555555564 6766654432 12222222222 344 8889999987431
Q ss_pred ----CCCccEEEecc
Q psy17734 412 ----PEKADIMVSEL 422 (626)
Q Consensus 412 ----p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 128 ~~~~~g~iD~lV~nA 142 (300)
T PRK06128 128 AVKELGGLDILVNIA 142 (300)
T ss_pred HHHHhCCCCEEEECC
Confidence 14789998754
No 377
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=66.27 E-value=76 Score=32.67 Aligned_cols=166 Identities=15% Similarity=0.139 Sum_probs=86.6
Q ss_pred eEEee---cCCCCCCHHHHHHHHHhCCccEEEecCCCcccc-cccc-cccccccCCCCcccccCCCCCcCccceEEEecC
Q psy17734 8 VSVGL---EYPTCYNIQSQIESLAAECFDYAVLPLVHPRFA-RHKD-VDRYRVFGLPEAQVQSLSSICPQWLKLIVCDIQ 82 (626)
Q Consensus 8 ~~~g~---~~~~~~~~~~~~~~~~~~~~df~~~pi~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~~~s 82 (626)
+-+|+ .+....++.+.++.+.+.|||.|=+.+...... .... .. .. ...+.+-+....-..+ . ++...
T Consensus 8 ~~~~~~~~~~~~~~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~-~~----~~~l~~~l~~~gl~i~-~-~~~~~ 80 (283)
T PRK13209 8 IPLGIYEKALPAGECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSR-EQ----RLALVNALVETGFRVN-S-MCLSA 80 (283)
T ss_pred ccceeecccCCCCCCHHHHHHHHHHcCCCeEEEecCccccchhccCCCH-HH----HHHHHHHHHHcCCcee-E-Eeccc
Confidence 44555 223445799999999999999999976543210 0000 00 00 0000000111000000 0 01101
Q ss_pred C-cccccCCccHHHHHHHHHHHHHHHhhhhhhCCCeEEEcCCC----C----ChhhHHHHHHHHhccC--CceEEEEEee
Q psy17734 83 C-KLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQ----P----DFCNFARTLYAHSEKN--MSYTAWIKVP 151 (626)
Q Consensus 83 ~-w~~~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~~~i~~~~~----~----~~~~~ar~~~~~~~~~--~~~~~~i~~p 151 (626)
. -+ .+.|+|+..|+.+.+.+++-++.|+.+|.+.|.++... . ...++++.++...... ..+.+.++-
T Consensus 81 ~~~~-~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~- 158 (283)
T PRK13209 81 HRRF-PLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEI- 158 (283)
T ss_pred cccc-CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee-
Confidence 0 12 45678999999999999999999999999999885311 1 1123344444443332 233344431
Q ss_pred ccCCCccccccCCCCCCccchHHHHHHHHHhcCCCCceEEEEEec
Q psy17734 152 IRPVDTSMLRQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEIN 196 (626)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~w~~W~~~r~~c~~~~~l~v~L~l~ 196 (626)
... .-..+.++.|..++... ++++++.+++.
T Consensus 159 -~~~-----------~~~~~~~~~~~ll~~v~--~~~lgl~~D~~ 189 (283)
T PRK13209 159 -MDT-----------PFMNSISKALGYAHYLN--SPWFQLYPDIG 189 (283)
T ss_pred -cCC-----------cccCCHHHHHHHHHHhC--CCccceEeccc
Confidence 110 00113556666666532 37788888865
No 378
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=66.25 E-value=55 Score=35.03 Aligned_cols=89 Identities=20% Similarity=0.147 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEe----ccc----ccCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSE----DMR----TWNAP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~----D~~----~~~~p 412 (626)
++.+||..|+ .|.++.++++.++..|+ +|++++.++.-. .+++ ..|.. .++.. +.. +.. +
T Consensus 158 ~g~~VlV~Ga-aG~vG~~aiqlAk~~G~--~Vi~~~~~~~k~~~~~~---~lGa~----~vi~~~~~~~~~~~i~~~~-~ 226 (348)
T PLN03154 158 KGDSVFVSAA-SGAVGQLVGQLAKLHGC--YVVGSAGSSQKVDLLKN---KLGFD----EAFNYKEEPDLDAALKRYF-P 226 (348)
T ss_pred CCCEEEEecC-ccHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHH---hcCCC----EEEECCCcccHHHHHHHHC-C
Confidence 5678999997 36677777888887774 899998876433 2221 12321 12221 111 111 2
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..+|+++- ..| ...+....+.|+++|.++
T Consensus 227 ~gvD~v~d-~vG--------~~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 227 EGIDIYFD-NVG--------GDMLDAALLNMKIHGRIA 255 (348)
T ss_pred CCcEEEEE-CCC--------HHHHHHHHHHhccCCEEE
Confidence 46898874 332 125566667899999877
No 379
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=66.11 E-value=12 Score=39.35 Aligned_cols=91 Identities=14% Similarity=0.052 Sum_probs=52.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCCCcc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPEKAD 416 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~k~D 416 (626)
..++.+..|.|.++.++++.++..|+ +|++++.++.-...++ ..+. -.++..+-.++ .....+|
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G~--~vi~~~~~~~~~~~~~---~~g~----~~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADGI--KVINIVRRKEQVDLLK---KIGA----EYVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHH---HcCC----cEEEECCCccHHHHHHHHhCCCCCc
Confidence 45677766778899888888888884 8999998874432222 1222 12333222221 1224689
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+++- ..| .+ ......+.|+++|.++-.
T Consensus 215 ~vid-~~g----~~----~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 215 IFFD-AVG----GG----LTGQILLAMPYGSTLYVY 241 (324)
T ss_pred EEEE-CCC----cH----HHHHHHHhhCCCCEEEEE
Confidence 9874 222 11 123345668899987643
No 380
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=66.06 E-value=50 Score=36.25 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCC-ccEEEEEeCCHHHH-HHHHHHHHcCC--CCCcEEEEEe----cc----ccc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANR-KVRVYAVEKNMSAV-VGLKYKKEEQW--AQSDVTIVSE----DM----RTW 409 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~-~~~V~AVE~np~a~-~a~~~~~~n~~--~~~nV~vi~~----D~----~~~ 409 (626)
++.+|+.+|++ |+++.++++.++..|. ..+|+++|.++.-. .+++....... +.. ..++.. +. +++
T Consensus 175 ~g~~VlV~G~~-G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~-~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 175 PGGNTAILGGA-GPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE-LLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCEEEEEeCC-CHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce-EEEECCCccccHHHHHHHH
Confidence 56789999853 6777777777776431 13799999997544 33332100000 101 223321 11 111
Q ss_pred CCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 410 NAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 410 ~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.....+|+++-. .| .+..+..+.+.++++|.++
T Consensus 253 t~g~g~D~vid~-~g-------~~~~~~~a~~~l~~~G~~v 285 (410)
T cd08238 253 TGGQGFDDVFVF-VP-------VPELVEEADTLLAPDGCLN 285 (410)
T ss_pred hCCCCCCEEEEc-CC-------CHHHHHHHHHHhccCCeEE
Confidence 122468888752 22 2456666778888877544
No 381
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=65.93 E-value=19 Score=42.24 Aligned_cols=66 Identities=12% Similarity=0.247 Sum_probs=45.7
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-----CCCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~Di 417 (626)
..+|+.+|+|+ .+...++...+.| .+++++|+|+..+...+. . +.+++.||.++.+. -+++|.
T Consensus 400 ~~~vII~G~Gr--~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~---~-----g~~v~~GDat~~~~L~~agi~~A~~ 467 (621)
T PRK03562 400 QPRVIIAGFGR--FGQIVGRLLLSSG--VKMTVLDHDPDHIETLRK---F-----GMKVFYGDATRMDLLESAGAAKAEV 467 (621)
T ss_pred cCcEEEEecCh--HHHHHHHHHHhCC--CCEEEEECCHHHHHHHHh---c-----CCeEEEEeCCCHHHHHhcCCCcCCE
Confidence 35789999987 5544455555444 589999999976643332 1 37789999988642 268999
Q ss_pred EEe
Q psy17734 418 MVS 420 (626)
Q Consensus 418 IVS 420 (626)
+|+
T Consensus 468 vvv 470 (621)
T PRK03562 468 LIN 470 (621)
T ss_pred EEE
Confidence 887
No 382
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=65.90 E-value=25 Score=36.73 Aligned_cols=69 Identities=23% Similarity=0.253 Sum_probs=51.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-CCCccEEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-PEKADIMV 419 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-p~k~DiIV 419 (626)
.+++...|+|+-.|..+-.+.+- ...|||||.-++|.... .. +. |+-...|-..+.+ +.++|-+|
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr------~m~V~aVDng~ma~sL~----dt---g~-v~h~r~DGfk~~P~r~~idWmV 275 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKR------NMRVYAVDNGPMAQSLM----DT---GQ-VTHLREDGFKFRPTRSNIDWMV 275 (358)
T ss_pred cCCceeeecccCCCccchhhhhc------ceEEEEeccchhhhhhh----cc---cc-eeeeeccCcccccCCCCCceEE
Confidence 47889999999999998543332 25999999888665221 22 33 8888999988887 67899999
Q ss_pred eccc
Q psy17734 420 SELL 423 (626)
Q Consensus 420 SEll 423 (626)
++++
T Consensus 276 CDmV 279 (358)
T COG2933 276 CDMV 279 (358)
T ss_pred eehh
Confidence 9765
No 383
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=65.82 E-value=19 Score=38.78 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=54.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccc-ccC------CCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMR-TWN------APEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~-~~~------~p~k 414 (626)
++.+||..|+ |.++.++++.++..|. .+|++++.++.-....+. -+. . ..+-..+.. ++. ....
T Consensus 186 ~g~~VlV~G~--G~vG~~a~~~ak~~G~-~~vi~~~~~~~~~~~~~~---lGa--~-~~i~~~~~~~~~~~~v~~~~~~g 256 (368)
T cd08300 186 PGSTVAVFGL--GAVGLAVIQGAKAAGA-SRIIGIDINPDKFELAKK---FGA--T-DCVNPKDHDKPIQQVLVEMTDGG 256 (368)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH---cCC--C-EEEcccccchHHHHHHHHHhCCC
Confidence 5678999975 6898888888888785 279999998754322221 232 1 212111111 110 1136
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEE
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKED-GISI 450 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~I 450 (626)
+|+++- ..| .+..+..+.+.|+++ |.++
T Consensus 257 ~d~vid-~~g-------~~~~~~~a~~~l~~~~G~~v 285 (368)
T cd08300 257 VDYTFE-CIG-------NVKVMRAALEACHKGWGTSV 285 (368)
T ss_pred CcEEEE-CCC-------ChHHHHHHHHhhccCCCeEE
Confidence 898874 222 134566666788886 8766
No 384
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=65.55 E-value=20 Score=37.71 Aligned_cols=91 Identities=23% Similarity=0.310 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec------ccccCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED------MRTWNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D------~~~~~~p~k~ 415 (626)
++.+||..|+| | ++.++++.++..|. .+|++++.++.-...++ ..+. + .++..+ +.++.....+
T Consensus 167 ~~~~vlI~g~~-~-vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~---~~g~-~---~~~~~~~~~~~~i~~~~~~~~~ 236 (340)
T cd05284 167 PGSTVVVIGVG-G-LGHIAVQILRALTP-ATVIAVDRSEEALKLAE---RLGA-D---HVLNASDDVVEEVRELTGGRGA 236 (340)
T ss_pred CCCEEEEEcCc-H-HHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHH---HhCC-c---EEEcCCccHHHHHHHHhCCCCC
Confidence 46789999955 3 88888888887663 48999988764332222 2232 1 122222 1222222468
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|+++.- .| .+..++...+.|+++|.++
T Consensus 237 dvvld~-~g-------~~~~~~~~~~~l~~~g~~i 263 (340)
T cd05284 237 DAVIDF-VG-------SDETLALAAKLLAKGGRYV 263 (340)
T ss_pred CEEEEc-CC-------CHHHHHHHHHHhhcCCEEE
Confidence 998852 11 1345666677889999877
No 385
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=65.52 E-value=35 Score=33.84 Aligned_cols=34 Identities=9% Similarity=0.076 Sum_probs=25.0
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN 379 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n 379 (626)
..+|+.+|||- ++...++.....|. .+++.+|..
T Consensus 21 ~s~VlIiG~gg--lG~evak~La~~GV-g~i~lvD~d 54 (197)
T cd01492 21 SARILLIGLKG--LGAEIAKNLVLSGI-GSLTILDDR 54 (197)
T ss_pred hCcEEEEcCCH--HHHHHHHHHHHcCC-CEEEEEECC
Confidence 46899999875 66666677677786 488888754
No 386
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=65.31 E-value=48 Score=35.91 Aligned_cols=94 Identities=24% Similarity=0.224 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec---------ccccCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED---------MRTWNAP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D---------~~~~~~p 412 (626)
++.+||..|+ |.++.++++.++..|. .+|++++.++... ......+.. . + +-..+ +.++...
T Consensus 203 ~g~~VlV~g~--g~vG~~ai~lA~~~G~-~~vi~~~~~~~~~---~~~~~~g~~-~-~-v~~~~~~~~~~~~~v~~~~~g 273 (384)
T cd08265 203 PGAYVVVYGA--GPIGLAAIALAKAAGA-SKVIAFEISEERR---NLAKEMGAD-Y-V-FNPTKMRDCLSGEKVMEVTKG 273 (384)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEEcCCHHHH---HHHHHcCCC-E-E-EcccccccccHHHHHHHhcCC
Confidence 4578888864 7899988888888774 2799998876522 111222321 1 1 11111 1112222
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
..+|+++. ..| . ....+....+.|+++|.++=
T Consensus 274 ~gvDvvld-~~g---~---~~~~~~~~~~~l~~~G~~v~ 305 (384)
T cd08265 274 WGADIQVE-AAG---A---PPATIPQMEKSIAINGKIVY 305 (384)
T ss_pred CCCCEEEE-CCC---C---cHHHHHHHHHHHHcCCEEEE
Confidence 46999885 222 1 13456667788899998873
No 387
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=65.20 E-value=44 Score=33.88 Aligned_cols=89 Identities=19% Similarity=0.281 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc---CCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW---NAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~---~~p~k~DiI 418 (626)
++.+|+..|+ .|.++.+++..++..|. +|+++..++ .. +.....+.. .++.....+. .....+|++
T Consensus 144 ~~~~vlv~g~-~g~~g~~~~~~a~~~g~--~v~~~~~~~-~~---~~~~~~g~~----~~~~~~~~~~~~~~~~~~~d~v 212 (309)
T cd05289 144 AGQTVLIHGA-AGGVGSFAVQLAKARGA--RVIATASAA-NA---DFLRSLGAD----EVIDYTKGDFERAAAPGGVDAV 212 (309)
T ss_pred CCCEEEEecC-CchHHHHHHHHHHHcCC--EEEEEecch-hH---HHHHHcCCC----EEEeCCCCchhhccCCCCceEE
Confidence 5678999997 56777777777777774 788887665 22 111223321 2222222111 122458888
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+.. .|. .....+.+.|+++|.++
T Consensus 213 ~~~-~~~--------~~~~~~~~~l~~~g~~v 235 (309)
T cd05289 213 LDT-VGG--------ETLARSLALVKPGGRLV 235 (309)
T ss_pred EEC-Cch--------HHHHHHHHHHhcCcEEE
Confidence 752 111 14555667788998876
No 388
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=65.11 E-value=19 Score=39.11 Aligned_cols=74 Identities=16% Similarity=0.149 Sum_probs=43.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC--------------------HHHHHHHHHHHH-cCCCCCcEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN--------------------MSAVVGLKYKKE-EQWAQSDVT 400 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n--------------------p~a~~a~~~~~~-n~~~~~nV~ 400 (626)
+..+|+.+|||- ++..++......|. .+++.+|.+ +.+..+.+.+++ |.. - +|+
T Consensus 27 ~~~~VlivG~GG--lGs~~a~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~-v-~v~ 101 (355)
T PRK05597 27 FDAKVAVIGAGG--LGSPALLYLAGAGV-GHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD-V-KVT 101 (355)
T ss_pred hCCeEEEECCCH--HHHHHHHHHHHcCC-CeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC-c-EEE
Confidence 357899999973 44444555556676 488888764 233434444433 332 2 366
Q ss_pred EEEeccccc---CCCCCccEEEe
Q psy17734 401 IVSEDMRTW---NAPEKADIMVS 420 (626)
Q Consensus 401 vi~~D~~~~---~~p~k~DiIVS 420 (626)
.+...+..- +.-..+|+||.
T Consensus 102 ~~~~~i~~~~~~~~~~~~DvVvd 124 (355)
T PRK05597 102 VSVRRLTWSNALDELRDADVILD 124 (355)
T ss_pred EEEeecCHHHHHHHHhCCCEEEE
Confidence 666555431 12267999987
No 389
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=65.03 E-value=51 Score=33.41 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=52.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++.+||..|+ |.++.++++.++..|.+ +|++++.++.-....+ ..+..+. +. ... +.......+|+++.-
T Consensus 97 ~g~~vlI~g~--g~vg~~~i~~a~~~g~~-~vi~~~~~~~~~~~~~---~~g~~~~-~~--~~~-~~~~~~~~~d~vl~~ 166 (277)
T cd08255 97 LGERVAVVGL--GLVGLLAAQLAKAAGAR-EVVGVDPDAARRELAE---ALGPADP-VA--ADT-ADEIGGRGADVVIEA 166 (277)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCC-cEEEECCCHHHHHHHH---HcCCCcc-cc--ccc-hhhhcCCCCCEEEEc
Confidence 5678888875 67888888888877752 4999998765432111 1221111 11 111 011122468988752
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
. | ....+....+.|+++|.++
T Consensus 167 ~-~-------~~~~~~~~~~~l~~~g~~~ 187 (277)
T cd08255 167 S-G-------SPSALETALRLLRDRGRVV 187 (277)
T ss_pred c-C-------ChHHHHHHHHHhcCCcEEE
Confidence 1 1 1235566677899999876
No 390
>PRK08264 short chain dehydrogenase; Validated
Probab=64.96 E-value=22 Score=35.20 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-------CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-------PEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-------p~k 414 (626)
.+++||..|+ +|.++..+++...+.|. .+|+++..++..... .+.. ++++.+|+.+... -.+
T Consensus 5 ~~~~vlItGg-sg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~--------~~~~-~~~~~~D~~~~~~~~~~~~~~~~ 73 (238)
T PRK08264 5 KGKVVLVTGA-NRGIGRAFVEQLLARGA-AKVYAAARDPESVTD--------LGPR-VVPLQLDVTDPASVAAAAEAASD 73 (238)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCc-ccEEEEecChhhhhh--------cCCc-eEEEEecCCCHHHHHHHHHhcCC
Confidence 4578999995 67777776766665563 289999887643211 2344 9999999976431 135
Q ss_pred ccEEEecc
Q psy17734 415 ADIMVSEL 422 (626)
Q Consensus 415 ~DiIVSEl 422 (626)
+|+||...
T Consensus 74 id~vi~~a 81 (238)
T PRK08264 74 VTILVNNA 81 (238)
T ss_pred CCEEEECC
Confidence 89998743
No 391
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.88 E-value=25 Score=35.55 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCC-chHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGR-GPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~Gt-G~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
++++++..|+++ +.++..++++..+.| .+|+.+..+.......+.. . ... +.++..|+.+.+.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G--~~Vi~~~r~~~~~~~~~~~--~--~~~-~~~~~~Dl~~~~~v~~~~~~~~ 78 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQG--ATVIYTYQNDRMKKSLQKL--V--DEE-DLLVECDVASDESIERAFATIK 78 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCC--CEEEEecCchHHHHHHHhh--c--cCc-eeEEeCCCCCHHHHHHHHHHHH
Confidence 567999999984 456666666666667 4888887774332222221 1 234 8889999976531
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 79 ~~~g~iD~lv~nA 91 (252)
T PRK06079 79 ERVGKIDGIVHAI 91 (252)
T ss_pred HHhCCCCEEEEcc
Confidence 15799998854
No 392
>PRK08328 hypothetical protein; Provisional
Probab=64.79 E-value=30 Score=35.21 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN 379 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n 379 (626)
...+|+.+|||- ++..++....+.|. .+++.+|.+
T Consensus 26 ~~~~VlIiG~GG--lGs~ia~~La~~Gv-g~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGG--LGSPVAYYLAAAGV-GRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCH--HHHHHHHHHHHcCC-CEEEEEcCC
Confidence 346899999983 33334555555676 488888743
No 393
>PRK07454 short chain dehydrogenase; Provisional
Probab=64.70 E-value=38 Score=33.65 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+.+++|..|+ +|.++..+++...+.| .+|++++.++... ...+..+. ...+ +.++.+|+.+.+.
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~--~~~~-~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAG--WDLALVARSQDALEALAAELRS--TGVK-AAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh--CCCc-EEEEEccCCCHHHHHHHHHHHH
Confidence 3468899985 6777776666665556 4899999987543 22222222 2344 9999999987541
Q ss_pred --CCCccEEEec
Q psy17734 412 --PEKADIMVSE 421 (626)
Q Consensus 412 --p~k~DiIVSE 421 (626)
-.++|++|..
T Consensus 79 ~~~~~id~lv~~ 90 (241)
T PRK07454 79 EQFGCPDVLINN 90 (241)
T ss_pred HHcCCCCEEEEC
Confidence 1368999874
No 394
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=64.49 E-value=18 Score=37.67 Aligned_cols=90 Identities=20% Similarity=0.177 Sum_probs=54.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC------CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN------APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~------~p~k~ 415 (626)
++.+||..|+ .|.++.++++.++..|. +|+++..++.-...++ ..|.. .++..+-.++. .+..+
T Consensus 143 ~g~~vlI~ga-~g~vG~~aiqlA~~~G~--~vi~~~~s~~~~~~l~---~~Ga~----~vi~~~~~~~~~~v~~~~~~gv 212 (329)
T cd08294 143 AGETVVVNGA-AGAVGSLVGQIAKIKGC--KVIGCAGSDDKVAWLK---ELGFD----AVFNYKTVSLEEALKEAAPDGI 212 (329)
T ss_pred CCCEEEEecC-ccHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHH---HcCCC----EEEeCCCccHHHHHHHHCCCCc
Confidence 5678998886 46777777888887784 8999998875432222 22321 22322211111 12468
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|+++- ..| ...+....+.|+++|.++
T Consensus 213 d~vld-~~g--------~~~~~~~~~~l~~~G~iv 238 (329)
T cd08294 213 DCYFD-NVG--------GEFSSTVLSHMNDFGRVA 238 (329)
T ss_pred EEEEE-CCC--------HHHHHHHHHhhccCCEEE
Confidence 98874 222 134556667889999876
No 395
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=64.21 E-value=80 Score=32.76 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEec
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVSE 421 (626)
++.+||..| .|.++.++++.++..|. +|+++..++.....++. .+.. ..+.. ++....+.+|+++.
T Consensus 155 ~g~~vlV~g--~g~vg~~~~q~a~~~G~--~vi~~~~~~~~~~~~~~---~g~~---~~~~~---~~~~~~~~~d~vid- 220 (319)
T cd08242 155 PGDKVAVLG--DGKLGLLIAQVLALTGP--DVVLVGRHSEKLALARR---LGVE---TVLPD---EAESEGGGFDVVVE- 220 (319)
T ss_pred CCCEEEEEC--CCHHHHHHHHHHHHcCC--eEEEEcCCHHHHHHHHH---cCCc---EEeCc---cccccCCCCCEEEE-
Confidence 567899986 47899998998988884 79999988754422222 2322 11111 11122256999875
Q ss_pred cccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 422 LLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 422 llgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
..+. .+.+..+.+.|+++|.++
T Consensus 221 ---~~g~----~~~~~~~~~~l~~~g~~v 242 (319)
T cd08242 221 ---ATGS----PSGLELALRLVRPRGTVV 242 (319)
T ss_pred ---CCCC----hHHHHHHHHHhhcCCEEE
Confidence 2221 234556667789999877
No 396
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=64.20 E-value=26 Score=38.26 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSA 382 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a 382 (626)
+..+|+.+|+| ..+..+++.++..|+ +|+++|.++..
T Consensus 166 ~~~~VlViGaG--~vG~~aa~~a~~lGa--~V~v~d~~~~~ 202 (370)
T TIGR00518 166 EPGDVTIIGGG--VVGTNAAKMANGLGA--TVTILDINIDR 202 (370)
T ss_pred CCceEEEEcCC--HHHHHHHHHHHHCCC--eEEEEECCHHH
Confidence 34569999886 577777888887785 79999998754
No 397
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=64.13 E-value=26 Score=36.50 Aligned_cols=74 Identities=8% Similarity=0.039 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC----CCCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~Di 417 (626)
+++||..|+ +|.++..+++.....| .+|+++..++... .........+..++ ++++.+|+.+-.. -..+|.
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~Dl~~~~~~~~~~~~~d~ 79 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRG--YTVKATVRDPNDPKKTEHLLALDGAKER-LHLFKANLLEEGSFDSVVDGCEG 79 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCC--CEEEEEEcCCCchhhHHHHHhccCCCCc-eEEEeccccCcchHHHHHcCCCE
Confidence 578999886 7888887777666556 4788877654221 11111111122234 9999999987531 146898
Q ss_pred EEe
Q psy17734 418 MVS 420 (626)
Q Consensus 418 IVS 420 (626)
||.
T Consensus 80 Vih 82 (322)
T PLN02662 80 VFH 82 (322)
T ss_pred EEE
Confidence 877
No 398
>PRK06197 short chain dehydrogenase; Provisional
Probab=64.09 E-value=35 Score=35.53 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=48.0
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-------- 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-------- 411 (626)
.++++||..|+. |.++..+++...+.| .+|+.+..++... .+.+.+....-+.+ +.++.+|+.+...
T Consensus 14 ~~~k~vlItGas-~gIG~~~a~~l~~~G--~~vi~~~r~~~~~~~~~~~l~~~~~~~~-~~~~~~Dl~d~~~v~~~~~~~ 89 (306)
T PRK06197 14 QSGRVAVVTGAN-TGLGYETAAALAAKG--AHVVLAVRNLDKGKAAAARITAATPGAD-VTLQELDLTSLASVRAAADAL 89 (306)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHhCCCCc-eEEEECCCCCHHHHHHHHHHH
Confidence 356789999975 455655555555556 4888888876432 33333322111234 8999999887541
Q ss_pred ---CCCccEEEecc
Q psy17734 412 ---PEKADIMVSEL 422 (626)
Q Consensus 412 ---p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 90 ~~~~~~iD~li~nA 103 (306)
T PRK06197 90 RAAYPRIDLLINNA 103 (306)
T ss_pred HhhCCCCCEEEECC
Confidence 14689998754
No 399
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=63.98 E-value=19 Score=38.17 Aligned_cols=92 Identities=18% Similarity=0.189 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc-------cccCCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM-------RTWNAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~-------~~~~~p~k 414 (626)
++.+||..|+ |.++.++++.++..|. .+|++++.++.-....+. .+.. . ++...- .+......
T Consensus 172 ~g~~vlI~g~--g~vG~~a~q~a~~~G~-~~v~~~~~~~~~~~~~~~---~ga~---~-~i~~~~~~~~~~l~~~~~~~~ 241 (351)
T cd08233 172 PGDTALVLGA--GPIGLLTILALKAAGA-SKIIVSEPSEARRELAEE---LGAT---I-VLDPTEVDVVAEVRKLTGGGG 241 (351)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH---hCCC---E-EECCCccCHHHHHHHHhCCCC
Confidence 5678899874 6788888888888774 289999887654322221 2321 1 121111 11111134
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+|+++-- .| .+..+....+.|+++|.++=
T Consensus 242 ~d~vid~-~g-------~~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 242 VDVSFDC-AG-------VQATLDTAIDALRPRGTAVN 270 (351)
T ss_pred CCEEEEC-CC-------CHHHHHHHHHhccCCCEEEE
Confidence 8998752 11 23456667788999998764
No 400
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=63.94 E-value=39 Score=33.58 Aligned_cols=65 Identities=26% Similarity=0.353 Sum_probs=45.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC--C--CCccEEEe
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--P--EKADIMVS 420 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--p--~k~DiIVS 420 (626)
+|-.||+ +|-.+...++-+.+-| ..|+||=-|+.-+.++ . ++++++.|+.+... . ..+|+|||
T Consensus 2 KIaiIgA-sG~~Gs~i~~EA~~RG--HeVTAivRn~~K~~~~---------~-~~~i~q~Difd~~~~a~~l~g~DaVIs 68 (211)
T COG2910 2 KIAIIGA-SGKAGSRILKEALKRG--HEVTAIVRNASKLAAR---------Q-GVTILQKDIFDLTSLASDLAGHDAVIS 68 (211)
T ss_pred eEEEEec-CchhHHHHHHHHHhCC--CeeEEEEeChHhcccc---------c-cceeecccccChhhhHhhhcCCceEEE
Confidence 4566776 7777776666665445 6999999987322111 2 48999999998764 2 57999999
Q ss_pred cc
Q psy17734 421 EL 422 (626)
Q Consensus 421 El 422 (626)
-.
T Consensus 69 A~ 70 (211)
T COG2910 69 AF 70 (211)
T ss_pred ec
Confidence 44
No 401
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=63.60 E-value=5.7 Score=43.67 Aligned_cols=19 Identities=16% Similarity=0.162 Sum_probs=15.6
Q ss_pred CCEEEEEcCCCchHHHHHH
Q psy17734 343 VTTIMVVGAGRGPLVTASL 361 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al 361 (626)
..+|+|+|||+|++++.++
T Consensus 64 ~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred ceeEEEecCCCCccHHHHH
Confidence 5689999999998876553
No 402
>PRK08324 short chain dehydrogenase; Validated
Probab=63.44 E-value=60 Score=38.41 Aligned_cols=74 Identities=19% Similarity=0.105 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
.+++||..|++ |.++..+++.....| .+|++++.++... .+.+.+... .. +.++.+|+.+...
T Consensus 421 ~gk~vLVTGas-ggIG~~la~~L~~~G--a~Vvl~~r~~~~~~~~~~~l~~~---~~-v~~v~~Dvtd~~~v~~~~~~~~ 493 (681)
T PRK08324 421 AGKVALVTGAA-GGIGKATAKRLAAEG--ACVVLADLDEEAAEAAAAELGGP---DR-ALGVACDVTDEAAVQAAFEEAA 493 (681)
T ss_pred CCCEEEEecCC-CHHHHHHHHHHHHCc--CEEEEEeCCHHHHHHHHHHHhcc---Cc-EEEEEecCCCHHHHHHHHHHHH
Confidence 56799999974 456665566655556 4899999987543 222222111 34 9999999876431
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-+++|+||..-
T Consensus 494 ~~~g~iDvvI~~A 506 (681)
T PRK08324 494 LAFGGVDIVVSNA 506 (681)
T ss_pred HHcCCCCEEEECC
Confidence 14689998743
No 403
>PRK11524 putative methyltransferase; Provisional
Probab=63.28 E-value=6.7 Score=41.13 Aligned_cols=54 Identities=22% Similarity=0.225 Sum_probs=37.1
Q ss_pred cEEEEEeccccc--CC-CCCccEEEeccccccC----C-CC---------CcHHHHHHHHHhcccCcEEEe
Q psy17734 398 DVTIVSEDMRTW--NA-PEKADIMVSELLGSFG----D-NE---------LSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 398 nV~vi~~D~~~~--~~-p~k~DiIVSEllgsfg----~-~E---------l~pe~L~~~~r~LkpgGi~IP 451 (626)
+.+++++|..++ .+ .+++|+||+.+.-..+ . ++ .+.+++..+.++|||||.++-
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 478999999885 23 3689999998752111 1 00 023577888999999998764
No 404
>PRK14852 hypothetical protein; Provisional
Probab=63.26 E-value=25 Score=43.07 Aligned_cols=75 Identities=12% Similarity=0.145 Sum_probs=40.5
Q ss_pred CCCEEEEEcCC-CchHHHHHHHHHhhcCCccEEEEEeCC--------------------HHHHHHHHHHHH-cCCCCCcE
Q psy17734 342 VVTTIMVVGAG-RGPLVTASLNAAKEANRKVRVYAVEKN--------------------MSAVVGLKYKKE-EQWAQSDV 399 (626)
Q Consensus 342 ~~~~VLDvG~G-tG~Ls~~al~Aa~~~g~~~~V~AVE~n--------------------p~a~~a~~~~~~-n~~~~~nV 399 (626)
+..+|+.+||| .|.-. +...+..|. .+++-+|.+ +.+.++.+.+.+ |.. - +|
T Consensus 331 ~~srVlVvGlGGlGs~i---a~~LAraGV-G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~-v-~I 404 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIH---LMTLARTGI-GNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPF-L-DI 404 (989)
T ss_pred hcCcEEEECCcHHHHHH---HHHHHHcCC-CeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCC-C-eE
Confidence 45789999999 55543 333344555 377766643 122223333332 332 1 47
Q ss_pred EEEEecccccCC---CCCccEEEecc
Q psy17734 400 TIVSEDMRTWNA---PEKADIMVSEL 422 (626)
Q Consensus 400 ~vi~~D~~~~~~---p~k~DiIVSEl 422 (626)
+++...+.+-.. -+.+|+||..+
T Consensus 405 ~~~~~~I~~en~~~fl~~~DiVVDa~ 430 (989)
T PRK14852 405 RSFPEGVAAETIDAFLKDVDLLVDGI 430 (989)
T ss_pred EEEecCCCHHHHHHHhhCCCEEEECC
Confidence 777655532211 25799999643
No 405
>PRK10458 DNA cytosine methylase; Provisional
Probab=63.25 E-value=21 Score=40.28 Aligned_cols=61 Identities=20% Similarity=0.145 Sum_probs=39.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~ 410 (626)
...+++|+-||-|.+..-+- .+|. ..|.|+|.++.|..+-+. |--.+.+..++.+|++++.
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe----~aG~-~~v~a~Eid~~A~~TY~~---N~~~~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFE----AIGG-QCVFTSEWNKHAVRTYKA---NWYCDPATHRFNEDIRDIT 147 (467)
T ss_pred CCceEEEeCcCccHHHHHHH----HcCC-EEEEEEechHHHHHHHHH---HcCCCCccceeccChhhCc
Confidence 35689999999999985432 3343 378999999988755543 2101112456667777765
No 406
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=63.15 E-value=17 Score=39.90 Aligned_cols=75 Identities=23% Similarity=0.261 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHH---HHHHHHHcCCCCCcEEEEEecccccCC-----CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVV---GLKYKKEEQWAQSDVTIVSEDMRTWNA-----PE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~---a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~ 413 (626)
.+++||..| |+|.++..+++...+.| .+|+++..++.... ....... . .. +++++.+|+++... ..
T Consensus 59 ~~~kVLVtG-atG~IG~~l~~~Ll~~G--~~V~~l~R~~~~~~~~~~~~~~~~-~-~~-~v~~v~~Dl~d~~~l~~~~~~ 132 (390)
T PLN02657 59 KDVTVLVVG-ATGYIGKFVVRELVRRG--YNVVAVAREKSGIRGKNGKEDTKK-E-LP-GAEVVFGDVTDADSLRKVLFS 132 (390)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCC--CEEEEEEechhhccccchhhHHhh-h-cC-CceEEEeeCCCHHHHHHHHHH
Confidence 567899999 58999988887766556 58999988753211 1111111 1 12 39999999987531 12
Q ss_pred ---CccEEEecc
Q psy17734 414 ---KADIMVSEL 422 (626)
Q Consensus 414 ---k~DiIVSEl 422 (626)
++|+||+-.
T Consensus 133 ~~~~~D~Vi~~a 144 (390)
T PLN02657 133 EGDPVDVVVSCL 144 (390)
T ss_pred hCCCCcEEEECC
Confidence 699999744
No 407
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=63.12 E-value=69 Score=34.32 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=54.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec--------ccccCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED--------MRTWNAPE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D--------~~~~~~p~ 413 (626)
++.+||..|+ |.++.++++.++..|. .+|++++.++.-...++ ..+.. ..+-..+ +.++. ..
T Consensus 187 ~g~~VlV~G~--g~vG~~a~q~ak~~G~-~~vi~~~~~~~~~~~~~---~~Ga~---~~i~~~~~~~~~~~~v~~~~-~~ 256 (369)
T cd08301 187 KGSTVAIFGL--GAVGLAVAEGARIRGA-SRIIGVDLNPSKFEQAK---KFGVT---EFVNPKDHDKPVQEVIAEMT-GG 256 (369)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH---HcCCc---eEEcccccchhHHHHHHHHh-CC
Confidence 5678999975 7899888888888775 37999998875432222 22321 1111111 11111 23
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccC-cEEEec
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKED-GISIPY 452 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~Lkpg-Gi~IP~ 452 (626)
.+|+++- ..| .++.+..+.+.++++ |.++-.
T Consensus 257 ~~d~vid-~~G-------~~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 257 GVDYSFE-CTG-------NIDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred CCCEEEE-CCC-------ChHHHHHHHHHhhcCCCEEEEE
Confidence 6888764 222 244566666778896 887643
No 408
>PRK07102 short chain dehydrogenase; Provisional
Probab=63.10 E-value=35 Score=33.96 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=46.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--------CCC
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------PEK 414 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------p~k 414 (626)
++|+..|+ +|.++...++...+.| .+|++++.++... ...+.....+ .. +++++.+|+.+... ..+
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~~~~~~-~~-~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAG--ARLYLAARDVERLERLADDLRARG-AV-AVSTHELDILDTASHAAFLDSLPAL 76 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHHHhc-CC-eEEEEecCCCChHHHHHHHHHHhhc
Confidence 46888896 5666666666655556 4899999887433 2222222222 23 49999999987542 135
Q ss_pred ccEEEec
Q psy17734 415 ADIMVSE 421 (626)
Q Consensus 415 ~DiIVSE 421 (626)
+|++|..
T Consensus 77 ~d~vv~~ 83 (243)
T PRK07102 77 PDIVLIA 83 (243)
T ss_pred CCEEEEC
Confidence 7999864
No 409
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=62.99 E-value=40 Score=35.66 Aligned_cols=86 Identities=14% Similarity=0.165 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEE-ecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVS-EDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~-~D~~~~~~p~k~DiIVS 420 (626)
.+++|+.+|+|. .+..++..++..|+ +|++++.++...... ...+ .+.+. .++.+. -.++|+||.
T Consensus 151 ~g~kvlViG~G~--iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~---~~~G-----~~~~~~~~l~~~--l~~aDiVI~ 216 (296)
T PRK08306 151 HGSNVLVLGFGR--TGMTLARTLKALGA--NVTVGARKSAHLARI---TEMG-----LSPFHLSELAEE--VGKIDIIFN 216 (296)
T ss_pred CCCEEEEECCcH--HHHHHHHHHHHCCC--EEEEEECCHHHHHHH---HHcC-----CeeecHHHHHHH--hCCCCEEEE
Confidence 468999999875 66666777777774 999999997543211 1222 22221 122221 146999998
Q ss_pred ccccccCCCCCcHHHH-HHHHHhcccCcEEE
Q psy17734 421 ELLGSFGDNELSPECL-YAAQKYLKEDGISI 450 (626)
Q Consensus 421 Ellgsfg~~El~pe~L-~~~~r~LkpgGi~I 450 (626)
-... ..+ +..-+.++|++++|
T Consensus 217 t~p~---------~~i~~~~l~~~~~g~vII 238 (296)
T PRK08306 217 TIPA---------LVLTKEVLSKMPPEALII 238 (296)
T ss_pred CCCh---------hhhhHHHHHcCCCCcEEE
Confidence 3211 122 23335578888777
No 410
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=62.89 E-value=74 Score=33.41 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc---cc--cCCCCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM---RT--WNAPEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~---~~--~~~p~k~D 416 (626)
++.+||..|+ .|.++..+++.++..|+ +|+++..+.....+ ...+. . .++..+- .+ ......+|
T Consensus 177 ~g~~vlI~g~-~g~ig~~~~~~a~~~g~--~vi~~~~~~~~~~~----~~~g~--~--~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08274 177 AGETVLVTGA-SGGVGSALVQLAKRRGA--IVIAVAGAAKEEAV----RALGA--D--TVILRDAPLLADAKALGGEPVD 245 (350)
T ss_pred CCCEEEEEcC-CcHHHHHHHHHHHhcCC--EEEEEeCchhhHHH----HhcCC--e--EEEeCCCccHHHHHhhCCCCCc
Confidence 5678999998 57788888888888885 68888755421122 22222 1 1222111 11 11225699
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+++. ..| ...+..+.+.|+++|.++
T Consensus 246 ~vi~-~~g--------~~~~~~~~~~l~~~G~~v 270 (350)
T cd08274 246 VVAD-VVG--------GPLFPDLLRLLRPGGRYV 270 (350)
T ss_pred EEEe-cCC--------HHHHHHHHHHhccCCEEE
Confidence 9985 222 124566678899999877
No 411
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=62.84 E-value=81 Score=33.31 Aligned_cols=91 Identities=15% Similarity=0.152 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc----C--CCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW----N--APEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~----~--~p~k~ 415 (626)
++.+||..|+ |.++.++++.++..|. .+|++++.++.-....+. .+. -.++..+..++ . .++.+
T Consensus 175 ~~~~vlI~g~--g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~---~g~----~~~~~~~~~~~~~~~~~~~~~~~ 244 (350)
T cd08240 175 ADEPVVIIGA--GGLGLMALALLKALGP-ANIIVVDIDEAKLEAAKA---AGA----DVVVNGSDPDAAKRIIKAAGGGV 244 (350)
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH---hCC----cEEecCCCccHHHHHHHHhCCCC
Confidence 4578888864 7888888888888885 378999887644322221 221 12232221111 1 12368
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
|+++. ..| .+..+....+.|+++|.+|
T Consensus 245 d~vid-~~g-------~~~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 245 DAVID-FVN-------NSATASLAFDILAKGGKLV 271 (350)
T ss_pred cEEEE-CCC-------CHHHHHHHHHHhhcCCeEE
Confidence 99885 222 2335666778889999877
No 412
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=62.68 E-value=11 Score=36.56 Aligned_cols=104 Identities=22% Similarity=0.350 Sum_probs=57.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEE-ec-ccccC-CCCCccEEE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVS-ED-MRTWN-APEKADIMV 419 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~-~D-~~~~~-~p~k~DiIV 419 (626)
+++++++|... |++. +.|.++ |+ .+|..||-|+--+ .+...++ +.-+. .| +.+|. ..++||.+.
T Consensus 2 ~~~g~V~GS~~-PwvE--v~aL~~-GA-~~iltveyn~L~i-------~~~~~dr-~ssi~p~df~~~~~~y~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQ-PWVE--VMALQH-GA-AKILTVEYNKLEI-------QEEFRDR-LSSILPVDFAKNWQKYAGSFDFAA 68 (177)
T ss_pred CceEEEEecCC-chhh--HHHHHc-CC-ceEEEEeeccccc-------Ccccccc-cccccHHHHHHHHHHhhccchhhh
Confidence 46899999986 5543 233332 33 5999999885211 1122233 22221 11 11221 236799876
Q ss_pred e----cc--ccccCCCCC---cHHHHHHHHHhcccCcEEEeccceeeEEeccChH
Q psy17734 420 S----EL--LGSFGDNEL---SPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHK 465 (626)
Q Consensus 420 S----El--lgsfg~~El---~pe~L~~~~r~LkpgGi~IP~~~t~y~api~s~~ 465 (626)
| |- ||-+|+.-. -...+..+++.|||||.++ ...|+..+.
T Consensus 69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~------l~vPvG~d~ 117 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLF------LGVPVGTDA 117 (177)
T ss_pred eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEE------EEeecCCcc
Confidence 6 22 444554322 1345666788999999877 457776654
No 413
>PLN02214 cinnamoyl-CoA reductase
Probab=62.66 E-value=32 Score=36.71 Aligned_cols=73 Identities=16% Similarity=0.175 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH--HHHHHHHHcCCCCCcEEEEEecccccCC----CCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV--VGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~--~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~ 415 (626)
++++||..|+ +|.++..++++..+.| .+|+++..++... ..++... +...+ ++++.+|+++... -..+
T Consensus 9 ~~~~vlVTGa-tGfIG~~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~--~~~~~-~~~~~~Dl~d~~~~~~~~~~~ 82 (342)
T PLN02214 9 AGKTVCVTGA-GGYIASWIVKILLERG--YTVKGTVRNPDDPKNTHLRELE--GGKER-LILCKADLQDYEALKAAIDGC 82 (342)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCc--CEEEEEeCCchhhhHHHHHHhh--CCCCc-EEEEecCcCChHHHHHHHhcC
Confidence 4568999887 7889888777766556 4898887764321 1112211 12234 9999999987431 1468
Q ss_pred cEEEe
Q psy17734 416 DIMVS 420 (626)
Q Consensus 416 DiIVS 420 (626)
|+||.
T Consensus 83 d~Vih 87 (342)
T PLN02214 83 DGVFH 87 (342)
T ss_pred CEEEE
Confidence 98876
No 414
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=62.59 E-value=60 Score=29.90 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN 379 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n 379 (626)
+|+.+||| .++...++...+.|. .+++-+|.+
T Consensus 1 ~VliiG~G--glGs~ia~~L~~~Gv-~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLG--GLGSEIALNLARSGV-GKITLIDFD 32 (143)
T ss_pred CEEEECCC--HHHHHHHHHHHHCCC-CEEEEEcCC
Confidence 37899997 354444555566675 488888755
No 415
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=62.35 E-value=17 Score=42.36 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=45.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-----CCCccEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKADIM 418 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~DiI 418 (626)
..|+.+|+|+ ++...++...+.| ..++++|.|+..+...+. . +..++.||..+.+. -+++|.+
T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~~g--~~vvvID~d~~~v~~~~~---~-----g~~v~~GDat~~~~L~~agi~~A~~v 468 (601)
T PRK03659 401 PQVIIVGFGR--FGQVIGRLLMANK--MRITVLERDISAVNLMRK---Y-----GYKVYYGDATQLELLRAAGAEKAEAI 468 (601)
T ss_pred CCEEEecCch--HHHHHHHHHHhCC--CCEEEEECCHHHHHHHHh---C-----CCeEEEeeCCCHHHHHhcCCccCCEE
Confidence 4688888775 6665566655445 599999999976643322 1 37789999987542 2689998
Q ss_pred Ee
Q psy17734 419 VS 420 (626)
Q Consensus 419 VS 420 (626)
|+
T Consensus 469 v~ 470 (601)
T PRK03659 469 VI 470 (601)
T ss_pred EE
Confidence 87
No 416
>PRK13699 putative methylase; Provisional
Probab=62.32 E-value=7.1 Score=39.69 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=35.8
Q ss_pred EEEEEeccccc--CCC-CCccEEEeccccccC---------CC----CCcHHHHHHHHHhcccCcEEE
Q psy17734 399 VTIVSEDMRTW--NAP-EKADIMVSELLGSFG---------DN----ELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 399 V~vi~~D~~~~--~~p-~k~DiIVSEllgsfg---------~~----El~pe~L~~~~r~LkpgGi~I 450 (626)
.+++++|..++ .+| +++|+||+.+.-..+ .+ |...+++.++.|.|||||.++
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~ 69 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMV 69 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEE
Confidence 57888998775 343 789999998752211 01 112457788889999999875
No 417
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=62.01 E-value=70 Score=33.63 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=52.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC------CCCCcc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN------APEKAD 416 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~------~p~k~D 416 (626)
.+||..|+ +|.++.++++.++..|+ .+|++++.++.-. .+++. .|.. .++..+-.++. .+..+|
T Consensus 156 ~~VlI~ga-~g~vG~~aiqlAk~~G~-~~Vi~~~~s~~~~~~~~~~---lGa~----~vi~~~~~~~~~~i~~~~~~gvd 226 (345)
T cd08293 156 QTMVVSGA-AGACGSLAGQIGRLLGC-SRVVGICGSDEKCQLLKSE---LGFD----AAINYKTDNVAERLRELCPEGVD 226 (345)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHh---cCCc----EEEECCCCCHHHHHHHHCCCCce
Confidence 78999987 46777777888887774 2799998886433 22221 2321 12222111110 125699
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+++. ..| .+ .+....+.|+++|.++-
T Consensus 227 ~vid-~~g-------~~-~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 227 VYFD-NVG-------GE-ISDTVISQMNENSHIIL 252 (345)
T ss_pred EEEE-CCC-------cH-HHHHHHHHhccCCEEEE
Confidence 9874 322 12 23555678999999873
No 418
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=62.01 E-value=97 Score=32.47 Aligned_cols=90 Identities=18% Similarity=0.207 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc-------CCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW-------NAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~-------~~p~k 414 (626)
++.+||..| .|.++.++++.++..|. .+|++++.++.-....+. -+ +..+..+..++ ...+.
T Consensus 167 ~~~~vlI~g--~g~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~---~g-----~~~~~~~~~~~~~~l~~~~~~~~ 235 (344)
T cd08284 167 PGDTVAVIG--CGPVGLCAVLSAQVLGA-ARVFAVDPVPERLERAAA---LG-----AEPINFEDAEPVERVREATEGRG 235 (344)
T ss_pred cCCEEEEEC--CcHHHHHHHHHHHHcCC-ceEEEEcCCHHHHHHHHH---hC-----CeEEecCCcCHHHHHHHHhCCCC
Confidence 567888886 46899888888887774 279999777643322221 12 12233222221 12256
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+|+++.-. + ..+.+....+.|+++|.+|
T Consensus 236 ~dvvid~~----~----~~~~~~~~~~~l~~~g~~v 263 (344)
T cd08284 236 ADVVLEAV----G----GAAALDLAFDLVRPGGVIS 263 (344)
T ss_pred CCEEEECC----C----CHHHHHHHHHhcccCCEEE
Confidence 89987621 1 1345666677889999877
No 419
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=61.97 E-value=95 Score=32.33 Aligned_cols=90 Identities=17% Similarity=0.113 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC--CCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN--APEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~--~p~k~DiIV 419 (626)
++..||..|+| .++.++++.++..| .+|+++..++......+. .+.. .++..+-.+.. ..+.+|+++
T Consensus 162 ~~~~vlI~g~g--~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~---~g~~----~~~~~~~~~~~~~~~~~~d~vi 230 (330)
T cd08245 162 PGERVAVLGIG--GLGHLAVQYARAMG--FETVAITRSPDKRELARK---LGAD----EVVDSGAELDEQAAAGGADVIL 230 (330)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH---hCCc----EEeccCCcchHHhccCCCCEEE
Confidence 45788888764 47777778888777 489999888754322221 2221 12221111110 224689988
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.-. + ....+..+.+.|+++|.++
T Consensus 231 ~~~-~-------~~~~~~~~~~~l~~~G~~i 253 (330)
T cd08245 231 VTV-V-------SGAAAEAALGGLRRGGRIV 253 (330)
T ss_pred ECC-C-------cHHHHHHHHHhcccCCEEE
Confidence 521 1 1335666677899999876
No 420
>PRK06125 short chain dehydrogenase; Provisional
Probab=61.86 E-value=45 Score=33.61 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-------CC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-------PE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-------p~ 413 (626)
++++++..|+++| ++..+++.....| .+|++++.++... ...+.+... .+.+ +.++..|+.+... -.
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~-~~~~-~~~~~~D~~~~~~~~~~~~~~g 80 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEG--CHLHLVARDADALEALAADLRAA-HGVD-VAVHALDLSSPEAREQLAAEAG 80 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhh-cCCc-eEEEEecCCCHHHHHHHHHHhC
Confidence 4578999997655 5655555555556 4899999886533 222222222 1334 8899999876431 25
Q ss_pred CccEEEecc
Q psy17734 414 KADIMVSEL 422 (626)
Q Consensus 414 k~DiIVSEl 422 (626)
++|++|...
T Consensus 81 ~id~lv~~a 89 (259)
T PRK06125 81 DIDILVNNA 89 (259)
T ss_pred CCCEEEECC
Confidence 799998854
No 421
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=61.74 E-value=33 Score=35.21 Aligned_cols=76 Identities=13% Similarity=0.030 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCCc-hHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRG-PLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG-~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|..|+|+| .++..+++...+.|. +|+.++.+.......+.+... . .. +.++.+|+.+.+.
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~~~~~~~~~~~~~-~-~~-~~~~~~Dl~~~~~v~~~~~~~~ 79 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQ-L-GS-DIVLPCDVAEDASIDAMFAELG 79 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecchhHHHHHHHHHhc-c-CC-ceEeecCCCCHHHHHHHHHHHH
Confidence 4578999999863 566555666555664 788787764322222222222 1 23 6778889877431
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 80 ~~~g~iD~linnA 92 (262)
T PRK07984 80 KVWPKFDGFVHSI 92 (262)
T ss_pred hhcCCCCEEEECC
Confidence 15789999864
No 422
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=61.28 E-value=27 Score=35.56 Aligned_cols=68 Identities=7% Similarity=0.124 Sum_probs=43.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++..||+||+|.-..-. +....+.|++++|+|-|.++..... .. .++ |+++..+.+.-.+ ..+++||+
T Consensus 24 ~~~~VLVVGGG~VA~RK--~~~Ll~~gA~VtVVap~i~~el~~l----~~---~~~-i~~~~r~~~~~dl-~g~~LVia 91 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIK--GKTFLKKGCYVYILSKKFSKEFLDL----KK---YGN-LKLIKGNYDKEFI-KDKHLIVI 91 (223)
T ss_pred CCCEEEEECCCHHHHHH--HHHHHhCCCEEEEEcCCCCHHHHHH----Hh---CCC-EEEEeCCCChHHh-CCCcEEEE
Confidence 56789999999755432 3344446777788888888765421 11 233 8888866554333 45788877
No 423
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=61.19 E-value=40 Score=33.94 Aligned_cols=74 Identities=20% Similarity=0.185 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------- 411 (626)
.+++||..|++.| ++..+++...+.| .+|+.+..+.......+..... +.+ +.++.+|+.+...
T Consensus 14 ~~k~vlItGas~g-IG~~ia~~l~~~G--~~v~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~D~~~~~~i~~~~~~~~~ 87 (258)
T PRK06935 14 DGKVAIVTGGNTG-LGQGYAVALAKAG--ADIIITTHGTNWDETRRLIEKE--GRK-VTFVQVDLTKPESAEKVVKEALE 87 (258)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCC--CEEEEEeCCcHHHHHHHHHHhc--CCc-eEEEEcCCCCHHHHHHHHHHHHH
Confidence 5679999998665 4444455555456 4788887764333333333222 234 8999999987541
Q ss_pred -CCCccEEEec
Q psy17734 412 -PEKADIMVSE 421 (626)
Q Consensus 412 -p~k~DiIVSE 421 (626)
-.++|++|..
T Consensus 88 ~~g~id~li~~ 98 (258)
T PRK06935 88 EFGKIDILVNN 98 (258)
T ss_pred HcCCCCEEEEC
Confidence 1468999874
No 424
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=60.90 E-value=42 Score=33.25 Aligned_cols=75 Identities=16% Similarity=0.087 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
.+++||..|+ +|.++..+++...+.| .+|+++..++... ...+.+...+ . +++++.+|+.+...
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g--~~V~~~~r~~~~~~~~~~~l~~~~--~-~~~~~~~Dl~~~~~~~~~~~~~~ 78 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADG--AEVIVVDICGDDAAATAELVEAAG--G-KARARQVDVRDRAALKAAVAAGV 78 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhcC--C-eEEEEECCCCCHHHHHHHHHHHH
Confidence 4568998886 5667776666655556 4899999886433 2233333222 3 39999999987431
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
..++|.||...
T Consensus 79 ~~~~~~d~vi~~a 91 (251)
T PRK12826 79 EDFGRLDILVANA 91 (251)
T ss_pred HHhCCCCEEEECC
Confidence 13689988754
No 425
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=60.89 E-value=48 Score=33.23 Aligned_cols=75 Identities=16% Similarity=0.144 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
++++||..|+ +|.++..+++...+.| .+|+.++.++... ...+.+... +.+ +.++.+|+.+...
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~i~~~--~~~-~~~~~~D~~~~~~~~~~~~~~~ 82 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAG--AEVILNGRDPAKLAAAAESLKGQ--GLS-AHALAFDVTDHDAVRAAIDAFE 82 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhc--Cce-EEEEEccCCCHHHHHHHHHHHH
Confidence 5678999996 5666666666555556 4899999887544 223333322 234 8889999887431
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|...
T Consensus 83 ~~~~~~d~li~~a 95 (255)
T PRK07523 83 AEIGPIDILVNNA 95 (255)
T ss_pred HhcCCCCEEEECC
Confidence 14689988743
No 426
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=60.86 E-value=26 Score=36.44 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=52.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec------ccccCCCCCcc
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED------MRTWNAPEKAD 416 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D------~~~~~~p~k~D 416 (626)
+.+||..|+ .|.++.++++.++..|. +|+++..++.-....+ ..+. + .++..+ +..+ ....+|
T Consensus 147 ~~~vlI~g~-~g~vg~~~~~~a~~~g~--~v~~~~~~~~~~~~~~---~~g~-~---~v~~~~~~~~~~~~~~-~~~~~d 215 (326)
T cd08289 147 QGPVLVTGA-TGGVGSLAVSILAKLGY--EVVASTGKADAADYLK---KLGA-K---EVIPREELQEESIKPL-EKQRWA 215 (326)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCC--eEEEEecCHHHHHHHH---HcCC-C---EEEcchhHHHHHHHhh-ccCCcC
Confidence 568999988 47788888888888884 8999988864332222 1222 1 111111 1111 124588
Q ss_pred EEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 417 IMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 417 iIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+++. ..| ...+....+.|+++|.+|
T Consensus 216 ~vld-~~g--------~~~~~~~~~~l~~~G~~i 240 (326)
T cd08289 216 GAVD-PVG--------GKTLAYLLSTLQYGGSVA 240 (326)
T ss_pred EEEE-CCc--------HHHHHHHHHHhhcCCEEE
Confidence 8764 222 124555667789999877
No 427
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=60.80 E-value=39 Score=34.41 Aligned_cols=76 Identities=12% Similarity=0.047 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCCc-hHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRG-PLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG-~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
++++++..|+++| -++..++++..+.|. +|+.++.++......+.+... .+ . ..++..|+.+...
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~--~v~~~~r~~~~~~~~~~l~~~-~g-~-~~~~~~Dv~~~~~v~~~~~~~~ 81 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGA--ELWFTYQSEVLEKRVKPLAEE-IG-C-NFVSELDVTNPKSISNLFDDIK 81 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCC--EEEEEeCchHHHHHHHHHHHh-cC-C-ceEEEccCCCHHHHHHHHHHHH
Confidence 4678999999874 355555555555564 788887774332222222221 12 2 3456788876431
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
..++|++|...
T Consensus 82 ~~~g~iDilVnna 94 (260)
T PRK06603 82 EKWGSFDFLLHGM 94 (260)
T ss_pred HHcCCccEEEEcc
Confidence 15799998854
No 428
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=60.72 E-value=36 Score=35.37 Aligned_cols=73 Identities=21% Similarity=0.151 Sum_probs=42.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHH--HHHHHHHHHcCCCCCcEEEEEecccccCCCCC-ccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSA--VVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEK-ADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a--~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k-~DiI 418 (626)
.+.+||-.|..+-.+ .++..+++.|++.+|+.+|-.|.. ....+.+.+.|. +|+++...+--.-. .+ +|.|
T Consensus 107 ~~~~ILT~~~S~~v~--~~l~~a~~~~~~~~V~v~es~P~~eG~~~a~~L~~~gi---~v~~i~d~~~~~~m-~~~vd~V 180 (282)
T PF01008_consen 107 DGDTILTHGYSSTVE--RFLLSAKKKGKKFRVIVLESRPYNEGRLMAKELAEAGI---PVTLIPDSAVGYVM-PRDVDKV 180 (282)
T ss_dssp TTEEEEEES--SHHH--HHHHHHHHTTEEEEEEEE--TTTTHHHTHHHHHHHTT----EEEEE-GGGHHHHH-HCTESEE
T ss_pred CCeEEEEeCCchHHH--HHHHHHHHcCCeEEEEEccCCcchhhhhHHHHhhhcce---eEEEEechHHHHHH-HHhCCee
Confidence 467999999876433 345556566777899999998732 333444455665 48888865543333 34 8888
Q ss_pred Ee
Q psy17734 419 VS 420 (626)
Q Consensus 419 VS 420 (626)
+.
T Consensus 181 li 182 (282)
T PF01008_consen 181 LI 182 (282)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 429
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=60.69 E-value=45 Score=30.72 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=43.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHH-HHHHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEE
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMS-AVVGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIM 418 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~-a~~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiI 418 (626)
.++++||.+|+| ..+..++.+....|+ .+|+-+..+.. +....+.. ++.+++++.- .++. ...++|+|
T Consensus 10 l~~~~vlviGaG--g~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~-----~~~~~~~~~~--~~~~~~~~~~Div 79 (135)
T PF01488_consen 10 LKGKRVLVIGAG--GAARAVAAALAALGA-KEITIVNRTPERAEALAEEF-----GGVNIEAIPL--EDLEEALQEADIV 79 (135)
T ss_dssp GTTSEEEEESSS--HHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHH-----TGCSEEEEEG--GGHCHHHHTESEE
T ss_pred cCCCEEEEECCH--HHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHc-----CccccceeeH--HHHHHHHhhCCeE
Confidence 367899999986 455555666666676 37999998864 32222222 1113666553 3333 12579999
Q ss_pred Eecc
Q psy17734 419 VSEL 422 (626)
Q Consensus 419 VSEl 422 (626)
|+-.
T Consensus 80 I~aT 83 (135)
T PF01488_consen 80 INAT 83 (135)
T ss_dssp EE-S
T ss_pred EEec
Confidence 9854
No 430
>PRK07063 short chain dehydrogenase; Provisional
Probab=60.61 E-value=46 Score=33.46 Aligned_cols=76 Identities=16% Similarity=0.134 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
.++++|..|++.| ++..+++...+.| .+|+.++.++... ...+.+.....+.+ +.++.+|+.+...
T Consensus 6 ~~k~vlVtGas~g-IG~~~a~~l~~~G--~~vv~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK07063 6 AGKVALVTGAAQG-IGAAIARAFAREG--AAVALADLDAALAERAAAAIARDVAGAR-VLAVPADVTDAASVAAAVAAAE 81 (260)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhccCCce-EEEEEccCCCHHHHHHHHHHHH
Confidence 4578999998654 5555555555556 4899999887544 23333332222344 8899999876531
Q ss_pred --CCCccEEEec
Q psy17734 412 --PEKADIMVSE 421 (626)
Q Consensus 412 --p~k~DiIVSE 421 (626)
.+++|++|..
T Consensus 82 ~~~g~id~li~~ 93 (260)
T PRK07063 82 EAFGPLDVLVNN 93 (260)
T ss_pred HHhCCCcEEEEC
Confidence 1478999874
No 431
>CHL00194 ycf39 Ycf39; Provisional
Probab=60.43 E-value=27 Score=36.82 Aligned_cols=65 Identities=17% Similarity=0.365 Sum_probs=44.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----CCCccEEEe
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKADIMVS 420 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~DiIVS 420 (626)
+||..|+ ||.++..++++....| .+|+++..++.... .. ..+ +++++.+|+++... -..+|.|+.
T Consensus 2 kIlVtGa-tG~iG~~lv~~Ll~~g--~~V~~l~R~~~~~~---~l--~~~---~v~~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 2 SLLVIGA-TGTLGRQIVRQALDEG--YQVRCLVRNLRKAS---FL--KEW---GAELVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred EEEEECC-CcHHHHHHHHHHHHCC--CeEEEEEcChHHhh---hH--hhc---CCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence 5787774 8899988887776656 58999988753221 11 112 39999999987431 146899987
No 432
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=60.38 E-value=39 Score=33.54 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~ 383 (626)
.++++|+.+|.| .++..+++.....| .+|++.|.++...
T Consensus 26 l~gk~v~I~G~G--~vG~~~A~~L~~~G--~~Vvv~D~~~~~~ 64 (200)
T cd01075 26 LEGKTVAVQGLG--KVGYKLAEHLLEEG--AKLIVADINEEAV 64 (200)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHCC--CEEEEEcCCHHHH
Confidence 367899999998 47666666666667 4899999998654
No 433
>KOG2671|consensus
Probab=60.30 E-value=8.2 Score=41.57 Aligned_cols=77 Identities=14% Similarity=0.037 Sum_probs=54.2
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHH--------HHHHHHHcCCCCCcEEEEEecccccCC-
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVV--------GLKYKKEEQWAQSDVTIVSEDMRTWNA- 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~--------a~~~~~~n~~~~~nV~vi~~D~~~~~~- 411 (626)
.+++.|.|=-.|||.|. .++++.| ..|+|-|++=+++. ...+.++.|....-+.++.+|...-..
T Consensus 207 ~pGdivyDPFVGTGslL----vsaa~FG--a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLL----VSAAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR 280 (421)
T ss_pred CCCCEEecCccccCcee----eehhhhc--ceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh
Confidence 37889999999999885 3555577 49999999865543 233444455444447778888776443
Q ss_pred -CCCccEEEeccc
Q psy17734 412 -PEKADIMVSELL 423 (626)
Q Consensus 412 -p~k~DiIVSEll 423 (626)
..++|.||+++.
T Consensus 281 sn~~fDaIvcDPP 293 (421)
T KOG2671|consen 281 SNLKFDAIVCDPP 293 (421)
T ss_pred hcceeeEEEeCCC
Confidence 368999999884
No 434
>PRK08589 short chain dehydrogenase; Validated
Probab=60.24 E-value=44 Score=34.14 Aligned_cols=75 Identities=16% Similarity=0.123 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------- 411 (626)
+++++|..|++.|+ +..+++.....| .+|+.++.++......+.+... +.+ +.++.+|+.+...
T Consensus 5 ~~k~vlItGas~gI-G~aia~~l~~~G--~~vi~~~r~~~~~~~~~~~~~~--~~~-~~~~~~Dl~~~~~~~~~~~~~~~ 78 (272)
T PRK08589 5 ENKVAVITGASTGI-GQASAIALAQEG--AYVLAVDIAEAVSETVDKIKSN--GGK-AKAYHVDISDEQQVKDFASEIKE 78 (272)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCC--CEEEEEeCcHHHHHHHHHHHhc--CCe-EEEEEeecCCHHHHHHHHHHHHH
Confidence 46789999987664 544455544456 4899999885443333333322 334 8999999886531
Q ss_pred -CCCccEEEecc
Q psy17734 412 -PEKADIMVSEL 422 (626)
Q Consensus 412 -p~k~DiIVSEl 422 (626)
..++|++|..-
T Consensus 79 ~~g~id~li~~A 90 (272)
T PRK08589 79 QFGRVDVLFNNA 90 (272)
T ss_pred HcCCcCEEEECC
Confidence 14689998864
No 435
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=60.20 E-value=55 Score=32.74 Aligned_cols=61 Identities=10% Similarity=0.143 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH--HHHHHHHHcCCCCCcEEEEEecccccCC
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV--VGLKYKKEEQWAQSDVTIVSEDMRTWNA 411 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~--~a~~~~~~n~~~~~nV~vi~~D~~~~~~ 411 (626)
...|++.|.-.|.-..+.+..+-..|.+++|.++|++-... .+.+ .. +|++++++.++...
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-------~p-~i~f~egss~dpai 132 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-------VP-DILFIEGSSTDPAI 132 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-------CC-CeEEEeCCCCCHHH
Confidence 45799999988866666666666677678999999874331 2221 23 49999999998653
No 436
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.15 E-value=49 Score=32.75 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|..|+ +|.++..+++.....| .+|++++.++... ...+..... +.+ +.++.+|+.+...
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G--~~Vi~~~r~~~~~~~~~~~~~~~--~~~-~~~~~~D~~~~~~~~~~~~~~~ 79 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEG--VNVGLLARTEENLKAVAEEVEAY--GVK-VVIATADVSDYEEVTAAIEQLK 79 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHHh--CCe-EEEEECCCCCHHHHHHHHHHHH
Confidence 3568999995 6777777666655556 4899999886543 222223222 334 9999999876531
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|...
T Consensus 80 ~~~~~id~vi~~a 92 (239)
T PRK07666 80 NELGSIDILINNA 92 (239)
T ss_pred HHcCCccEEEEcC
Confidence 13689998743
No 437
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=60.06 E-value=42 Score=37.16 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=46.8
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC-----CCCCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN-----APEKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~-----~p~k~Di 417 (626)
..+|+.+|+| .++..+++...+.| ..|+++|.++......+. .+ . ++.++.+|..+.. ..+++|.
T Consensus 231 ~~~iiIiG~G--~~g~~l~~~L~~~~--~~v~vid~~~~~~~~~~~---~~--~-~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 231 VKRVMIVGGG--NIGYYLAKLLEKEG--YSVKLIERDPERAEELAE---EL--P-NTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCC--CeEEEEECCHHHHHHHHH---HC--C-CCeEEECCCCCHHHHHhcCCccCCE
Confidence 4689999985 57766666665545 589999999976533322 11 2 3888999987643 1268999
Q ss_pred EEe
Q psy17734 418 MVS 420 (626)
Q Consensus 418 IVS 420 (626)
+++
T Consensus 301 vi~ 303 (453)
T PRK09496 301 FIA 303 (453)
T ss_pred EEE
Confidence 887
No 438
>PRK07677 short chain dehydrogenase; Provisional
Probab=60.06 E-value=46 Score=33.37 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=46.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-----------
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA----------- 411 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~----------- 411 (626)
+++|..|++.| ++..+++...+.| .+|++++.++... ...+..... +.+ +.++.+|+.+...
T Consensus 2 k~~lItG~s~g-iG~~ia~~l~~~G--~~Vi~~~r~~~~~~~~~~~~~~~--~~~-~~~~~~D~~~~~~~~~~~~~~~~~ 75 (252)
T PRK07677 2 KVVIITGGSSG-MGKAMAKRFAEEG--ANVVITGRTKEKLEEAKLEIEQF--PGQ-VLTVQMDVRNPEDVQKMVEQIDEK 75 (252)
T ss_pred CEEEEeCCCCh-HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhc--CCc-EEEEEecCCCHHHHHHHHHHHHHH
Confidence 57899998766 4544455544456 4899999886543 222222222 344 9999999876431
Q ss_pred CCCccEEEecc
Q psy17734 412 PEKADIMVSEL 422 (626)
Q Consensus 412 p~k~DiIVSEl 422 (626)
-.++|++|...
T Consensus 76 ~~~id~lI~~a 86 (252)
T PRK07677 76 FGRIDALINNA 86 (252)
T ss_pred hCCccEEEECC
Confidence 14689999754
No 439
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=60.04 E-value=36 Score=34.40 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------- 411 (626)
++++++..|+++| ++..+++...+.| .+|+.++.++.....+. . ..+.+ +..+.+|+.+...
T Consensus 4 ~~k~vlItGas~g-IG~~ia~~l~~~G--~~V~~~~r~~~~~~~l~---~-~~~~~-~~~~~~D~~~~~~~~~~~~~~~~ 75 (262)
T TIGR03325 4 KGEVVLVTGGASG-LGRAIVDRFVAEG--ARVAVLDKSAAGLQELE---A-AHGDA-VVGVEGDVRSLDDHKEAVARCVA 75 (262)
T ss_pred CCcEEEEECCCCh-HHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH---h-hcCCc-eEEEEeccCCHHHHHHHHHHHHH
Confidence 4578999998655 5555555555556 48999998864332221 1 12344 8899999887431
Q ss_pred -CCCccEEEecc
Q psy17734 412 -PEKADIMVSEL 422 (626)
Q Consensus 412 -p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 76 ~~g~id~li~~A 87 (262)
T TIGR03325 76 AFGKIDCLIPNA 87 (262)
T ss_pred HhCCCCEEEECC
Confidence 14689998853
No 440
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=60.01 E-value=17 Score=41.76 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=44.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC-----CCCccEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKADIM 418 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~DiI 418 (626)
.+|+.+|||+ .+..+++..++.| ..|+.||+|+......+. . ++.++.+|..+-+. -+++|.+
T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g--~~vvvId~d~~~~~~~~~-----~---g~~~i~GD~~~~~~L~~a~i~~a~~v 485 (558)
T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAG--IPLVVIETSRTRVDELRE-----R---GIRAVLGNAANEEIMQLAHLDCARWL 485 (558)
T ss_pred CCEEEECCCh--HHHHHHHHHHHCC--CCEEEEECCHHHHHHHHH-----C---CCeEEEcCCCCHHHHHhcCccccCEE
Confidence 4688888876 6666666665555 589999999865533321 1 38899999987531 2688977
Q ss_pred Ee
Q psy17734 419 VS 420 (626)
Q Consensus 419 VS 420 (626)
+.
T Consensus 486 iv 487 (558)
T PRK10669 486 LL 487 (558)
T ss_pred EE
Confidence 65
No 441
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=59.78 E-value=45 Score=33.42 Aligned_cols=75 Identities=7% Similarity=0.096 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
.++++|..|+++ .++..+++...+.| .+|+.++.++... ...+.+... +.+ +.++.+|+.+...
T Consensus 8 ~~k~~lItGas~-giG~~ia~~L~~~G--~~vvl~~r~~~~~~~~~~~l~~~--~~~-~~~~~~Dl~~~~~~~~~~~~~~ 81 (254)
T PRK08085 8 AGKNILITGSAQ-GIGFLLATGLAEYG--AEIIINDITAERAELAVAKLRQE--GIK-AHAAPFNVTHKQEVEAAIEHIE 81 (254)
T ss_pred CCCEEEEECCCC-hHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHHHHhc--CCe-EEEEecCCCCHHHHHHHHHHHH
Confidence 457899999765 55555555555556 4899999886443 222333222 234 8888999887531
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|...
T Consensus 82 ~~~~~id~vi~~a 94 (254)
T PRK08085 82 KDIGPIDVLINNA 94 (254)
T ss_pred HhcCCCCEEEECC
Confidence 14689998854
No 442
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=59.58 E-value=37 Score=35.73 Aligned_cols=90 Identities=12% Similarity=0.059 Sum_probs=53.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEeccccc----CCCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTW----NAPEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~----~~p~k~Di 417 (626)
.+.+||..|+ |.++.++++.++..|. +|++++.++.-...++. .+. + .++...-.++ .....+|+
T Consensus 163 ~~~~vlV~g~--g~iG~~~~~~a~~~G~--~vi~~~~~~~~~~~~~~---~g~-~---~~i~~~~~~~~~~~~~~~~~d~ 231 (333)
T cd08296 163 PGDLVAVQGI--GGLGHLAVQYAAKMGF--RTVAISRGSDKADLARK---LGA-H---HYIDTSKEDVAEALQELGGAKL 231 (333)
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHH---cCC-c---EEecCCCccHHHHHHhcCCCCE
Confidence 5678999983 7899888888888884 79999988643311121 221 1 1222111111 10135888
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
++. ..| .+..+....+.|+++|.++
T Consensus 232 vi~-~~g-------~~~~~~~~~~~l~~~G~~v 256 (333)
T cd08296 232 ILA-TAP-------NAKAISALVGGLAPRGKLL 256 (333)
T ss_pred EEE-CCC-------chHHHHHHHHHcccCCEEE
Confidence 874 111 2346666777899999876
No 443
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=59.50 E-value=45 Score=30.88 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=47.2
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC---HHHHHHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN---MSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n---p~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
++||..|+++| ++..++++..+.|. .+|+.+..+ +.+....+.....+ . ++++++.|+.+.+.
T Consensus 1 k~~lItGa~~g-iG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~l~~~l~~~~--~-~~~~~~~D~~~~~~~~~~~~~~~ 75 (167)
T PF00106_consen 1 KTVLITGASSG-IGRALARALARRGA-RVVILTSRSEDSEGAQELIQELKAPG--A-KITFIECDLSDPESIRALIEEVI 75 (167)
T ss_dssp EEEEEETTTSH-HHHHHHHHHHHTTT-EEEEEEESSCHHHHHHHHHHHHHHTT--S-EEEEEESETTSHHHHHHHHHHHH
T ss_pred CEEEEECCCCH-HHHHHHHHHHhcCc-eEEEEeeecccccccccccccccccc--c-ccccccccccccccccccccccc
Confidence 36899998765 55555555554443 488999988 33333334444444 4 49999999876531
Q ss_pred --CCCccEEEec
Q psy17734 412 --PEKADIMVSE 421 (626)
Q Consensus 412 --p~k~DiIVSE 421 (626)
..++|++|..
T Consensus 76 ~~~~~ld~li~~ 87 (167)
T PF00106_consen 76 KRFGPLDILINN 87 (167)
T ss_dssp HHHSSESEEEEE
T ss_pred cccccccccccc
Confidence 1589999874
No 444
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=59.38 E-value=72 Score=31.70 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN 379 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n 379 (626)
..+|+.+|||. ++...+....+.|. .+++-+|.+
T Consensus 21 ~~~V~IvG~Gg--lGs~ia~~La~~Gv-g~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGG--LGSNVAINLARAGI-GKLILVDFD 54 (200)
T ss_pred CCcEEEECcCH--HHHHHHHHHHHcCC-CEEEEECCC
Confidence 46899999974 54444555555675 378888876
No 445
>PRK12743 oxidoreductase; Provisional
Probab=59.38 E-value=41 Score=33.86 Aligned_cols=72 Identities=10% Similarity=0.058 Sum_probs=44.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeC-CHH-HHHHHHHHHHcCCCCCcEEEEEecccccCC----------
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEK-NMS-AVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---------- 411 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~-np~-a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------- 411 (626)
++||..|++. .++..+++...+.| .+|+.+.. +.. +....+.++.. +.+ +.++.+|+.+...
T Consensus 3 k~vlItGas~-giG~~~a~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~Dl~~~~~~~~~~~~~~~ 76 (256)
T PRK12743 3 QVAIVTASDS-GIGKACALLLAQQG--FDIGITWHSDEEGAKETAEEVRSH--GVR-AEIRQLDLSDLPEGAQALDKLIQ 76 (256)
T ss_pred CEEEEECCCc-hHHHHHHHHHHHCC--CEEEEEeCCChHHHHHHHHHHHhc--CCc-eEEEEccCCCHHHHHHHHHHHHH
Confidence 5799999754 46666666665566 47877754 332 22333333333 344 9999999887531
Q ss_pred -CCCccEEEec
Q psy17734 412 -PEKADIMVSE 421 (626)
Q Consensus 412 -p~k~DiIVSE 421 (626)
-.++|++|..
T Consensus 77 ~~~~id~li~~ 87 (256)
T PRK12743 77 RLGRIDVLVNN 87 (256)
T ss_pred HcCCCCEEEEC
Confidence 1468999874
No 446
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.92 E-value=36 Score=34.65 Aligned_cols=77 Identities=8% Similarity=0.011 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCC-chHHHHHHHHHhhcCCccEEEEEeCCHHHHHHH-HHHHHcCCCCCcEEEEEecccccCC--------
Q psy17734 342 VVTTIMVVGAGR-GPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSDVTIVSEDMRTWNA-------- 411 (626)
Q Consensus 342 ~~~~VLDvG~Gt-G~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~-~~~~~n~~~~~nV~vi~~D~~~~~~-------- 411 (626)
.+++++..|++. +.++..++++..+.|. +|+.+..+......+ +...... +.+ +.++..|+.+.+.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~--~v~~~~r~~~~~~~~~~~~~~~~-~~~-~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA--KLVFTYAGERLEKEVRELADTLE-GQE-SLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEecCcccchHHHHHHHHHcC-CCc-eEEEecCCCCHHHHHHHHHHH
Confidence 467999999983 5567666666666674 788775442111111 1111111 244 8889999876531
Q ss_pred ---CCCccEEEecc
Q psy17734 412 ---PEKADIMVSEL 422 (626)
Q Consensus 412 ---p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 82 ~~~~g~ld~lv~na 95 (257)
T PRK08594 82 KEEVGVIHGVAHCI 95 (257)
T ss_pred HHhCCCccEEEECc
Confidence 16799998753
No 447
>PRK08251 short chain dehydrogenase; Provisional
Probab=58.68 E-value=55 Score=32.55 Aligned_cols=74 Identities=9% Similarity=0.030 Sum_probs=45.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-----------
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA----------- 411 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~----------- 411 (626)
+++|..|+ +|.++..+++...+.| .+|+.++.++... ...+......-+.+ +.++.+|+.+...
T Consensus 3 k~vlItGa-s~giG~~la~~l~~~g--~~v~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~~~~~~~~~~~~ 78 (248)
T PRK08251 3 QKILITGA-SSGLGAGMAREFAAKG--RDLALCARRTDRLEELKAELLARYPGIK-VAVAALDVNDHDQVFEVFAEFRDE 78 (248)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhhCCCce-EEEEEcCCCCHHHHHHHHHHHHHH
Confidence 57898896 5566665565555556 4899999887543 22222222111233 9999999987531
Q ss_pred CCCccEEEec
Q psy17734 412 PEKADIMVSE 421 (626)
Q Consensus 412 p~k~DiIVSE 421 (626)
-.++|++|..
T Consensus 79 ~~~id~vi~~ 88 (248)
T PRK08251 79 LGGLDRVIVN 88 (248)
T ss_pred cCCCCEEEEC
Confidence 1468998874
No 448
>KOG0725|consensus
Probab=58.36 E-value=1.7e+02 Score=30.55 Aligned_cols=78 Identities=15% Similarity=0.050 Sum_probs=52.4
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCC-CCCcEEEEEecccccC--------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQW-AQSDVTIVSEDMRTWN-------- 410 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~-~~~nV~vi~~D~~~~~-------- 410 (626)
..++++|.-|+++|+=- ..+...++.|+ +|+.+..++... .+++.....+. +.+ +..+.+|.++.+
T Consensus 6 l~gkvalVTG~s~GIG~-aia~~la~~Ga--~v~i~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv~~~~~~~~l~~~ 81 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGK-AIALLLAKAGA--KVVITGRSEERLEETAQELGGLGYTGGK-VLAIVCDVSKEVDVEKLVEF 81 (270)
T ss_pred CCCcEEEEECCCChHHH-HHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCCe-eEEEECcCCCHHHHHHHHHH
Confidence 46789999999999753 33344445674 888888887654 44444333443 344 999999997543
Q ss_pred ----CCCCccEEEecc
Q psy17734 411 ----APEKADIMVSEL 422 (626)
Q Consensus 411 ----~p~k~DiIVSEl 422 (626)
...+.|++|..-
T Consensus 82 ~~~~~~GkidiLvnna 97 (270)
T KOG0725|consen 82 AVEKFFGKIDILVNNA 97 (270)
T ss_pred HHHHhCCCCCEEEEcC
Confidence 136899999854
No 449
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=58.29 E-value=42 Score=36.05 Aligned_cols=94 Identities=19% Similarity=0.195 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEe--c----ccccCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE--D----MRTWNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~--D----~~~~~~p~k~ 415 (626)
++.+||..|+ |.++..+++.++..|.+ .|++++.++.-....+. .+.... +..-.. + +.++. ++.+
T Consensus 183 ~g~~vlI~g~--g~vG~~a~~~a~~~G~~-~v~~~~~~~~~~~~~~~---~g~~~~-v~~~~~~~~~~~~l~~~~-~~~~ 254 (365)
T cd05279 183 PGSTCAVFGL--GGVGLSVIMGCKAAGAS-RIIAVDINKDKFEKAKQ---LGATEC-INPRDQDKPIVEVLTEMT-DGGV 254 (365)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHH---hCCCee-cccccccchHHHHHHHHh-CCCC
Confidence 5678888864 78988888888888852 68888877643322222 222111 111111 1 11122 3568
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcc-cCcEEEe
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLK-EDGISIP 451 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~Lk-pgGi~IP 451 (626)
|+++. ..| .+..+..+.+.|+ ++|.++-
T Consensus 255 d~vid-~~g-------~~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 255 DYAFE-VIG-------SADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred cEEEE-CCC-------CHHHHHHHHHHhccCCCEEEE
Confidence 99884 222 1345666667788 9998873
No 450
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=58.21 E-value=46 Score=35.10 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec---ccccCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED---MRTWNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D---~~~~~~p~k~DiI 418 (626)
++.+||..|+ |.++.++++.++..|. .+|++++.++.-....+ ..+.... +..-..+ +.+....+.+|++
T Consensus 163 ~g~~vlV~g~--g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~---~~g~~~~-~~~~~~~~~~~~~~~~~~~vd~v 235 (341)
T cd05281 163 SGKSVLITGC--GPIGLMAIAVAKAAGA-SLVIASDPNPYRLELAK---KMGADVV-INPREEDVVEVKSVTDGTGVDVV 235 (341)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHH---HhCccee-eCcccccHHHHHHHcCCCCCCEE
Confidence 4567888664 6788888888887774 26888876653332111 1232111 1111111 1222223578999
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+.-. + .........+.|+++|.++
T Consensus 236 ld~~----g----~~~~~~~~~~~l~~~G~~v 259 (341)
T cd05281 236 LEMS----G----NPKAIEQGLKALTPGGRVS 259 (341)
T ss_pred EECC----C----CHHHHHHHHHHhccCCEEE
Confidence 8621 1 2334556667889999876
No 451
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.18 E-value=55 Score=32.41 Aligned_cols=74 Identities=16% Similarity=0.092 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
++++||..|++. .++..+++...+.| .+|++++.++... .....+.. +.+ +.++.+|+.+...
T Consensus 4 ~~~~vlItGasg-~iG~~l~~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~---~~~-~~~~~~D~~~~~~~~~~~~~~~ 76 (251)
T PRK07231 4 EGKVAIVTGASS-GIGEGIARRFAAEG--ARVVVTDRNEEAAERVAAEILA---GGR-AIAVAADVSDEADVEAAVAAAL 76 (251)
T ss_pred CCcEEEEECCCC-hHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHhc---CCe-EEEEECCCCCHHHHHHHHHHHH
Confidence 456899998754 55555555544455 4899999987443 22222221 334 8999999876531
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|+||...
T Consensus 77 ~~~~~~d~vi~~a 89 (251)
T PRK07231 77 ERFGSVDILVNNA 89 (251)
T ss_pred HHhCCCCEEEECC
Confidence 13689998844
No 452
>KOG2015|consensus
Probab=58.14 E-value=32 Score=36.89 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=46.1
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC--------------------HHHHHHHHHHHHcCCCCCcEEEEE
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN--------------------MSAVVGLKYKKEEQWAQSDVTIVS 403 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n--------------------p~a~~a~~~~~~n~~~~~nV~vi~ 403 (626)
..||++|||- |+-.+++-.+..|- .++..||.+ +.|.+|.+.+++.--+- .|....
T Consensus 41 ~kiLviGAGG--LGCElLKnLal~gF-~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~-~v~~h~ 116 (422)
T KOG2015|consen 41 CKILVIGAGG--LGCELLKNLALSGF-RQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC-VVVPHR 116 (422)
T ss_pred CcEEEEccCc--ccHHHHHhHHhhcc-ceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc-EEeeee
Confidence 5699999973 55555555444453 144444332 34556666555433233 378888
Q ss_pred ecccccCCC--CCccEEEecc
Q psy17734 404 EDMRTWNAP--EKADIMVSEL 422 (626)
Q Consensus 404 ~D~~~~~~p--~k~DiIVSEl 422 (626)
+++++.+.. .+||+||+-+
T Consensus 117 ~kIqd~~~~FYk~F~~iicGL 137 (422)
T KOG2015|consen 117 QKIQDKPISFYKRFDLIICGL 137 (422)
T ss_pred cchhcCCHHHHhhhceEEecc
Confidence 999988754 7899999843
No 453
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=58.09 E-value=42 Score=33.97 Aligned_cols=65 Identities=23% Similarity=0.372 Sum_probs=44.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHH-HHHHHHcCCCCCcEEEEEecccccCC-----CCCccEE
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVG-LKYKKEEQWAQSDVTIVSEDMRTWNA-----PEKADIM 418 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a-~~~~~~n~~~~~nV~vi~~D~~~~~~-----p~k~DiI 418 (626)
.++.+|||+ ++...++.....| ..|++||.++..... ++ ..+ .+.++.+|..+-.. -..+|++
T Consensus 2 ~iiIiG~G~--vG~~va~~L~~~g--~~Vv~Id~d~~~~~~~~~----~~~---~~~~v~gd~t~~~~L~~agi~~aD~v 70 (225)
T COG0569 2 KIIIIGAGR--VGRSVARELSEEG--HNVVLIDRDEERVEEFLA----DEL---DTHVVIGDATDEDVLEEAGIDDADAV 70 (225)
T ss_pred EEEEECCcH--HHHHHHHHHHhCC--CceEEEEcCHHHHHHHhh----hhc---ceEEEEecCCCHHHHHhcCCCcCCEE
Confidence 578899987 5544455555455 499999999866522 22 112 48899999887531 2689999
Q ss_pred Ee
Q psy17734 419 VS 420 (626)
Q Consensus 419 VS 420 (626)
|.
T Consensus 71 va 72 (225)
T COG0569 71 VA 72 (225)
T ss_pred EE
Confidence 87
No 454
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=58.00 E-value=46 Score=33.64 Aligned_cols=73 Identities=19% Similarity=0.299 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------- 411 (626)
+++++|..|+++|+ +..+++...+.| .+|+.++.++.....+.. ....+ +.++.+|+.+...
T Consensus 5 ~~k~vlVtGas~gI-G~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~----~~~~~-~~~~~~D~~~~~~~~~~~~~~~~ 76 (263)
T PRK06200 5 HGQVALITGGGSGI-GRALVERFLAEG--ARVAVLERSAEKLASLRQ----RFGDH-VLVVEGDVTSYADNQRAVDQTVD 76 (263)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----HhCCc-ceEEEccCCCHHHHHHHHHHHHH
Confidence 45789999986654 555555555556 489999988654322111 12344 8889999887531
Q ss_pred -CCCccEEEecc
Q psy17734 412 -PEKADIMVSEL 422 (626)
Q Consensus 412 -p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 77 ~~g~id~li~~a 88 (263)
T PRK06200 77 AFGKLDCFVGNA 88 (263)
T ss_pred hcCCCCEEEECC
Confidence 14789998753
No 455
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=57.95 E-value=43 Score=35.11 Aligned_cols=75 Identities=12% Similarity=0.065 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHH-HHHHHHHHHHcCCCCCcEEEEEecccccCC----CCCcc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMS-AVVGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKAD 416 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~-a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~D 416 (626)
++++||+.|+ +|.++..+++.....| .+|+++-.+.. +....+.....+...+ ++++.+|+++... -..+|
T Consensus 4 ~~~~vlVTGa-tG~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~Dl~~~~~~~~~~~~~d 79 (322)
T PLN02986 4 GGKLVCVTGA-SGYIASWIVKLLLLRG--YTVKATVRDLTDRKKTEHLLALDGAKER-LKLFKADLLEESSFEQAIEGCD 79 (322)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCC--CEEEEEECCCcchHHHHHHHhccCCCCc-eEEEecCCCCcchHHHHHhCCC
Confidence 4578999885 7888887777665556 47887655532 1111211111222344 9999999987542 14589
Q ss_pred EEEe
Q psy17734 417 IMVS 420 (626)
Q Consensus 417 iIVS 420 (626)
+||.
T Consensus 80 ~vih 83 (322)
T PLN02986 80 AVFH 83 (322)
T ss_pred EEEE
Confidence 8876
No 456
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=57.94 E-value=31 Score=36.41 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc----cccCCCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM----RTWNAPEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~----~~~~~p~k~Di 417 (626)
++.+|+..| .|.++..+++.++..|.+ .|++++.++......+ ..+.... +.....+. .++...+.+|+
T Consensus 161 ~g~~vlI~~--~g~vg~~a~~la~~~G~~-~v~~~~~~~~~~~~~~---~~g~~~~-v~~~~~~~~~~l~~~~~~~~~d~ 233 (340)
T TIGR00692 161 SGKSVLVTG--AGPIGLMAIAVAKASGAY-PVIVSDPNEYRLELAK---KMGATYV-VNPFKEDVVKEVADLTDGEGVDV 233 (340)
T ss_pred CCCEEEEEC--CCHHHHHHHHHHHHcCCc-EEEEECCCHHHHHHHH---HhCCcEE-EcccccCHHHHHHHhcCCCCCCE
Confidence 456777755 378888888888877741 4888877763332211 1222110 11111111 11222356899
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
++.- .+ ..+.+....+.|+++|.++
T Consensus 234 vld~----~g----~~~~~~~~~~~l~~~g~~v 258 (340)
T TIGR00692 234 FLEM----SG----APKALEQGLQAVTPGGRVS 258 (340)
T ss_pred EEEC----CC----CHHHHHHHHHhhcCCCEEE
Confidence 9762 11 1234566677889999876
No 457
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=57.76 E-value=30 Score=35.55 Aligned_cols=90 Identities=24% Similarity=0.266 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec----ccccCCCCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED----MRTWNAPEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D----~~~~~~p~k~Di 417 (626)
++..||..|+ .|.++.++++.++..|. +|+++..++.-...++ ..+. +. +-.-..+ +..+ ...+|+
T Consensus 142 ~g~~vlV~ga-~g~~g~~~~~~a~~~g~--~v~~~~~~~~~~~~~~---~~g~-~~-~~~~~~~~~~~i~~~--~~~~d~ 211 (320)
T cd08243 142 PGDTLLIRGG-TSSVGLAALKLAKALGA--TVTATTRSPERAALLK---ELGA-DE-VVIDDGAIAEQLRAA--PGGFDK 211 (320)
T ss_pred CCCEEEEEcC-CChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHH---hcCC-cE-EEecCccHHHHHHHh--CCCceE
Confidence 4678999988 56788778888888784 7999988764332111 1222 11 2110111 1122 356999
Q ss_pred EEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 418 MVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 418 IVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
++. ..| ...+....+.|+++|.++
T Consensus 212 vl~-~~~--------~~~~~~~~~~l~~~g~~v 235 (320)
T cd08243 212 VLE-LVG--------TATLKDSLRHLRPGGIVC 235 (320)
T ss_pred EEE-CCC--------hHHHHHHHHHhccCCEEE
Confidence 885 222 124556667899999876
No 458
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=57.63 E-value=31 Score=32.66 Aligned_cols=64 Identities=22% Similarity=0.216 Sum_probs=46.4
Q ss_pred EEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----CCCccEEEec
Q psy17734 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKADIMVSE 421 (626)
Q Consensus 346 VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~DiIVSE 421 (626)
|+.+|+ ||.++..+++.+.+.| .+|+++=.++.-... .. +++++.+|+.+... -..+|.||.-
T Consensus 1 I~V~Ga-tG~vG~~l~~~L~~~~--~~V~~~~R~~~~~~~---------~~-~~~~~~~d~~d~~~~~~al~~~d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGA-TGFVGRALAKQLLRRG--HEVTALVRSPSKAED---------SP-GVEIIQGDLFDPDSVKAALKGADAVIHA 67 (183)
T ss_dssp EEEETT-TSHHHHHHHHHHHHTT--SEEEEEESSGGGHHH---------CT-TEEEEESCTTCHHHHHHHHTTSSEEEEC
T ss_pred eEEECC-CChHHHHHHHHHHHCC--CEEEEEecCchhccc---------cc-ccccceeeehhhhhhhhhhhhcchhhhh
Confidence 566774 8889988888887666 699999988742211 23 49999999988631 1579999884
Q ss_pred c
Q psy17734 422 L 422 (626)
Q Consensus 422 l 422 (626)
.
T Consensus 68 ~ 68 (183)
T PF13460_consen 68 A 68 (183)
T ss_dssp C
T ss_pred h
Confidence 4
No 459
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=57.58 E-value=53 Score=32.95 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=44.9
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCC-CCcEEEEEecccccCC----------
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWA-QSDVTIVSEDMRTWNA---------- 411 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~-~~nV~vi~~D~~~~~~---------- 411 (626)
++||..|++ |.++..+++.....| .+|+.++.++... .....+.. ..+ .+ +.++.+|+.+...
T Consensus 3 k~ilItG~~-~~IG~~la~~l~~~g--~~vi~~~r~~~~~~~~~~~~~~-~~~~~~-~~~~~~D~~~~~~i~~~~~~~~~ 77 (259)
T PRK12384 3 QVAVVIGGG-QTLGAFLCHGLAEEG--YRVAVADINSEKAANVAQEINA-EYGEGM-AYGFGADATSEQSVLALSRGVDE 77 (259)
T ss_pred CEEEEECCC-cHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHH-hcCCce-eEEEEccCCCHHHHHHHHHHHHH
Confidence 579999965 556655555555455 4899999886543 22222221 112 23 8999999886431
Q ss_pred -CCCccEEEec
Q psy17734 412 -PEKADIMVSE 421 (626)
Q Consensus 412 -p~k~DiIVSE 421 (626)
-.++|++|..
T Consensus 78 ~~~~id~vv~~ 88 (259)
T PRK12384 78 IFGRVDLLVYN 88 (259)
T ss_pred HcCCCCEEEEC
Confidence 1468998874
No 460
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=57.37 E-value=39 Score=35.56 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=54.6
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe-cc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS-EL 422 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS-El 422 (626)
.+|..+|.| .++...+++.+..|..+.|++.|.+......... -+..+. ...+.. ...-..+|+||- -+
T Consensus 4 ~~v~IvG~G--liG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~---lgv~d~----~~~~~~-~~~~~~aD~VivavP 73 (279)
T COG0287 4 MKVGIVGLG--LMGGSLARALKEAGLVVRIIGRDRSAATLKAALE---LGVIDE----LTVAGL-AEAAAEADLVIVAVP 73 (279)
T ss_pred cEEEEECCc--hHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh---cCcccc----cccchh-hhhcccCCEEEEecc
Confidence 578888855 5666667777777766778999998755432221 121111 000110 111245788654 22
Q ss_pred ccccCCCCCcHHHHHHHHHhcccCcEEEeccceeeEEecc
Q psy17734 423 LGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIM 462 (626)
Q Consensus 423 lgsfg~~El~pe~L~~~~r~LkpgGi~IP~~~t~y~api~ 462 (626)
+ +...++++.....||+|.++. +-.++...+++
T Consensus 74 i------~~~~~~l~~l~~~l~~g~iv~-Dv~S~K~~v~~ 106 (279)
T COG0287 74 I------EATEEVLKELAPHLKKGAIVT-DVGSVKSSVVE 106 (279)
T ss_pred H------HHHHHHHHHhcccCCCCCEEE-ecccccHHHHH
Confidence 2 234566776666777776654 44444444443
No 461
>PRK07814 short chain dehydrogenase; Provisional
Probab=57.29 E-value=57 Score=33.04 Aligned_cols=74 Identities=22% Similarity=0.145 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|..|+ +|.++..+++.....| .+|+.++.++... ...+.+.. .+.+ +.++.+|+++...
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~l~~--~~~~-~~~~~~D~~~~~~~~~~~~~~~ 82 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAG--ADVLIAARTESQLDEVAEQIRA--AGRR-AHVVAADLAHPEATAGLAGQAV 82 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHh--cCCc-EEEEEccCCCHHHHHHHHHHHH
Confidence 4678999996 5556666666655556 4899999886543 22222222 2344 8999999887541
Q ss_pred --CCCccEEEec
Q psy17734 412 --PEKADIMVSE 421 (626)
Q Consensus 412 --p~k~DiIVSE 421 (626)
-.++|+||..
T Consensus 83 ~~~~~id~vi~~ 94 (263)
T PRK07814 83 EAFGRLDIVVNN 94 (263)
T ss_pred HHcCCCCEEEEC
Confidence 1378999874
No 462
>PRK05867 short chain dehydrogenase; Provisional
Probab=57.21 E-value=48 Score=33.25 Aligned_cols=75 Identities=19% Similarity=0.096 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|..|+++|. +..+++...+.| .+|+.++.++... ...+.+...+ .+ +..+.+|+.+...
T Consensus 8 ~~k~vlVtGas~gI-G~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~l~~~~--~~-~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T PRK05867 8 HGKRALITGASTGI-GKRVALAYVEAG--AQVAIAARHLDALEKLADEIGTSG--GK-VVPVCCDVSQHQQVTSMLDQVT 81 (253)
T ss_pred CCCEEEEECCCchH-HHHHHHHHHHCC--CEEEEEcCCHHHHHHHHHHHHhcC--Ce-EEEEEccCCCHHHHHHHHHHHH
Confidence 46789999987654 444455544456 4899999887543 2223333222 34 8889999876531
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|...
T Consensus 82 ~~~g~id~lv~~a 94 (253)
T PRK05867 82 AELGGIDIAVCNA 94 (253)
T ss_pred HHhCCCCEEEECC
Confidence 14799998753
No 463
>PRK09242 tropinone reductase; Provisional
Probab=57.08 E-value=55 Score=32.86 Aligned_cols=77 Identities=18% Similarity=0.116 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|..|++.|+=. .+++.....| .+|++++.++... ...+......-+.+ +.++.+|+.+...
T Consensus 8 ~~k~~lItGa~~gIG~-~~a~~l~~~G--~~v~~~~r~~~~~~~~~~~l~~~~~~~~-~~~~~~Dl~~~~~~~~~~~~~~ 83 (257)
T PRK09242 8 DGQTALITGASKGIGL-AIAREFLGLG--ADVLIVARDADALAQARDELAEEFPERE-VHGLAADVSDDEDRRAILDWVE 83 (257)
T ss_pred CCCEEEEeCCCchHHH-HHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHhhCCCCe-EEEEECCCCCHHHHHHHHHHHH
Confidence 4678999998665443 3344444445 4899999886443 22233322211234 8899999876421
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|...
T Consensus 84 ~~~g~id~li~~a 96 (257)
T PRK09242 84 DHWDGLHILVNNA 96 (257)
T ss_pred HHcCCCCEEEECC
Confidence 14789988743
No 464
>PRK07062 short chain dehydrogenase; Provisional
Probab=56.64 E-value=59 Score=32.79 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|..|+++| ++..+++.....| .+|+++..++... ...+......-+.+ +.++..|+.+.+.
T Consensus 7 ~~k~~lItGas~g-iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T PRK07062 7 EGRVAVVTGGSSG-IGLATVELLLEAG--ASVAICGRDEERLASAEARLREKFPGAR-LLAARCDVLDEADVAAFAAAVE 82 (265)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHhhCCCce-EEEEEecCCCHHHHHHHHHHHH
Confidence 4678999998765 4444455544456 4899999887543 22333222211234 8889999887531
Q ss_pred --CCCccEEEec
Q psy17734 412 --PEKADIMVSE 421 (626)
Q Consensus 412 --p~k~DiIVSE 421 (626)
-.++|++|..
T Consensus 83 ~~~g~id~li~~ 94 (265)
T PRK07062 83 ARFGGVDMLVNN 94 (265)
T ss_pred HhcCCCCEEEEC
Confidence 1468999875
No 465
>PRK08339 short chain dehydrogenase; Provisional
Probab=56.49 E-value=63 Score=32.88 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|..|+++|+ +..+++...+.| .+|+.++.++... ...+.+... .+.+ +.++.+|+.+...
T Consensus 7 ~~k~~lItGas~gI-G~aia~~l~~~G--~~V~~~~r~~~~~~~~~~~~~~~-~~~~-~~~~~~Dv~~~~~i~~~~~~~~ 81 (263)
T PRK08339 7 SGKLAFTTASSKGI-GFGVARVLARAG--ADVILLSRNEENLKKAREKIKSE-SNVD-VSYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCCEEEEeCCCCcH-HHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhh-cCCc-eEEEEecCCCHHHHHHHHHHHH
Confidence 56789999988765 444445544456 4899999886543 222222221 1234 8999999887531
Q ss_pred -CCCccEEEec
Q psy17734 412 -PEKADIMVSE 421 (626)
Q Consensus 412 -p~k~DiIVSE 421 (626)
-.++|++|..
T Consensus 82 ~~g~iD~lv~n 92 (263)
T PRK08339 82 NIGEPDIFFFS 92 (263)
T ss_pred hhCCCcEEEEC
Confidence 1468998875
No 466
>PRK06181 short chain dehydrogenase; Provisional
Probab=56.34 E-value=58 Score=32.78 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=46.3
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC-----------
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA----------- 411 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~----------- 411 (626)
++||..|+ +|.++..+++.....| .+|++++.++... ...+.+... +.+ +.++.+|+.+...
T Consensus 2 ~~vlVtGa-sg~iG~~la~~l~~~g--~~Vi~~~r~~~~~~~~~~~l~~~--~~~-~~~~~~Dl~~~~~~~~~~~~~~~~ 75 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLARAG--AQLVLAARNETRLASLAQELADH--GGE-ALVVPTDVSDAEACERLIEAAVAR 75 (263)
T ss_pred CEEEEecC-CcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhc--CCc-EEEEEccCCCHHHHHHHHHHHHHH
Confidence 46888886 4556666565555455 4899999986443 333333332 334 8999999987531
Q ss_pred CCCccEEEecc
Q psy17734 412 PEKADIMVSEL 422 (626)
Q Consensus 412 p~k~DiIVSEl 422 (626)
-.++|++|...
T Consensus 76 ~~~id~vi~~a 86 (263)
T PRK06181 76 FGGIDILVNNA 86 (263)
T ss_pred cCCCCEEEECC
Confidence 13689998753
No 467
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=56.21 E-value=90 Score=32.89 Aligned_cols=90 Identities=20% Similarity=0.146 Sum_probs=53.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEE-e---cc----cccCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVS-E---DM----RTWNAPE 413 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~-~---D~----~~~~~p~ 413 (626)
++.+||..|+ .|.++.++++.++..|. +|+++..++.-...++. ..|.. .++. . +. +... ..
T Consensus 151 ~g~~VlI~Ga-~G~vG~~aiqlAk~~G~--~Vi~~~~~~~~~~~~~~--~lGa~----~vi~~~~~~~~~~~i~~~~-~~ 220 (338)
T cd08295 151 KGETVFVSAA-SGAVGQLVGQLAKLKGC--YVVGSAGSDEKVDLLKN--KLGFD----DAFNYKEEPDLDAALKRYF-PN 220 (338)
T ss_pred CCCEEEEecC-ccHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHH--hcCCc----eeEEcCCcccHHHHHHHhC-CC
Confidence 5678999887 46778888888888885 79998877643321111 02321 1222 1 11 1121 24
Q ss_pred CccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 414 KADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 414 k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.+|+++- ..| ...+....+.|+++|.++
T Consensus 221 gvd~v~d-~~g--------~~~~~~~~~~l~~~G~iv 248 (338)
T cd08295 221 GIDIYFD-NVG--------GKMLDAVLLNMNLHGRIA 248 (338)
T ss_pred CcEEEEE-CCC--------HHHHHHHHHHhccCcEEE
Confidence 6898874 332 124555667899999877
No 468
>PLN00198 anthocyanidin reductase; Provisional
Probab=56.15 E-value=42 Score=35.47 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=45.9
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHH-cCCCCCcEEEEEecccccCC----CCCc
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKE-EQWAQSDVTIVSEDMRTWNA----PEKA 415 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~-n~~~~~nV~vi~~D~~~~~~----p~k~ 415 (626)
+.+++||..|+ +|.++..+++.....| .+|+++..++........... ... .+ ++++.+|+++... -.++
T Consensus 7 ~~~~~vlItG~-~GfIG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~-~~-~~~~~~Dl~d~~~~~~~~~~~ 81 (338)
T PLN00198 7 TGKKTACVIGG-TGFLASLLIKLLLQKG--YAVNTTVRDPENQKKIAHLRALQEL-GD-LKIFGADLTDEESFEAPIAGC 81 (338)
T ss_pred CCCCeEEEECC-chHHHHHHHHHHHHCC--CEEEEEECCCCCHHHHHHHHhcCCC-Cc-eEEEEcCCCChHHHHHHHhcC
Confidence 34678988885 5888888777776666 478777655322111111111 112 24 9999999987542 1468
Q ss_pred cEEEe
Q psy17734 416 DIMVS 420 (626)
Q Consensus 416 DiIVS 420 (626)
|.||.
T Consensus 82 d~vih 86 (338)
T PLN00198 82 DLVFH 86 (338)
T ss_pred CEEEE
Confidence 99885
No 469
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=55.81 E-value=37 Score=36.38 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=53.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc-------cccCCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM-------RTWNAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~-------~~~~~p~k 414 (626)
++.+||..|+ |.++.++++.++..|. .+|++++.++.-....+. .+. -.++..+. ..+.....
T Consensus 182 ~g~~vLI~g~--g~vG~a~i~lak~~G~-~~Vi~~~~~~~~~~~~~~---~g~----~~vv~~~~~~~~~~l~~~~~~~~ 251 (363)
T cd08279 182 PGDTVAVIGC--GGVGLNAIQGARIAGA-SRIIAVDPVPEKLELARR---FGA----THTVNASEDDAVEAVRDLTDGRG 251 (363)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH---hCC----eEEeCCCCccHHHHHHHHcCCCC
Confidence 5678888865 6788888888887774 258898887643322221 222 12222211 11222356
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+|+++.-. | ..+.+....+.|+++|.++
T Consensus 252 vd~vld~~-~-------~~~~~~~~~~~l~~~G~~v 279 (363)
T cd08279 252 ADYAFEAV-G-------RAATIRQALAMTRKGGTAV 279 (363)
T ss_pred CCEEEEcC-C-------ChHHHHHHHHHhhcCCeEE
Confidence 89887521 1 1245677778899999876
No 470
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.80 E-value=49 Score=33.65 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=45.6
Q ss_pred CCCEEEEEcC-CCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGA-GRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~-GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|.-|+ |++.++...+++..+.|. +|+.+..+......++.+... .+ . ...+.+|+.+.+.
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~-~~-~-~~~~~~Dv~~~~~v~~~~~~~~ 79 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGA--ELAFTYVVDKLEERVRKMAAE-LD-S-ELVFRCDVASDDEINQVFADLG 79 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHhc-cC-C-ceEEECCCCCHHHHHHHHHHHH
Confidence 4578999998 456666666666655664 777765543222222222222 12 2 4568888887531
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 80 ~~~g~iD~lVnnA 92 (261)
T PRK08690 80 KHWDGLDGLVHSI 92 (261)
T ss_pred HHhCCCcEEEECC
Confidence 15799999864
No 471
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.79 E-value=40 Score=34.20 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=46.1
Q ss_pred CCCEEEEEcCC-CchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAG-RGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~G-tG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
.+++++..|+| ++.++..+++...+.| .+|+.++.+.......+... ..+.+ +.++..|+.+.+.
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G--~~v~l~~r~~~~~~~~~~~~--~~~~~-~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQG--AEVVLTGFGRALRLTERIAK--RLPEP-APVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCC--CEEEEecCccchhHHHHHHH--hcCCC-CcEEeCCCCCHHHHHHHHHHHH
Confidence 45789999995 4667766666655566 48888876531111111111 11234 7788889876531
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 81 ~~~g~iD~li~nA 93 (256)
T PRK07889 81 EHVDGLDGVVHSI 93 (256)
T ss_pred HHcCCCcEEEEcc
Confidence 15799998853
No 472
>PRK09186 flagellin modification protein A; Provisional
Probab=55.78 E-value=59 Score=32.45 Aligned_cols=77 Identities=25% Similarity=0.172 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
++++||..|++.| ++..+++...+.| .+|+++..++... ...+.+....-... +.++.+|+.+...
T Consensus 3 ~~k~vlItGas~g-iG~~~a~~l~~~g--~~v~~~~r~~~~~~~~~~~l~~~~~~~~-~~~~~~Dl~d~~~~~~~~~~~~ 78 (256)
T PRK09186 3 KGKTILITGAGGL-IGSALVKAILEAG--GIVIAADIDKEALNELLESLGKEFKSKK-LSLVELDITDQESLEEFLSKSA 78 (256)
T ss_pred CCCEEEEECCCch-HHHHHHHHHHHCC--CEEEEEecChHHHHHHHHHHHhhcCCCc-eeEEEecCCCHHHHHHHHHHHH
Confidence 3578999998655 5555555555456 4899998876443 33333322211233 7888999887431
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|..-
T Consensus 79 ~~~~~id~vi~~A 91 (256)
T PRK09186 79 EKYGKIDGAVNCA 91 (256)
T ss_pred HHcCCccEEEECC
Confidence 13589998754
No 473
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=55.70 E-value=82 Score=33.73 Aligned_cols=93 Identities=18% Similarity=0.104 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccC-CCCCccEEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWN-APEKADIMV 419 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~-~p~k~DiIV 419 (626)
++.+|+..|+ |+++.++++.++..|. +|++++.++... .+++ ..+.. ..+...+...+. ....+|+++
T Consensus 180 ~g~~vlV~G~--G~vG~~av~~Ak~~G~--~vi~~~~~~~~~~~~~~---~~Ga~---~~i~~~~~~~~~~~~~~~D~vi 249 (357)
T PLN02514 180 SGLRGGILGL--GGVGHMGVKIAKAMGH--HVTVISSSDKKREEALE---HLGAD---DYLVSSDAAEMQEAADSLDYII 249 (357)
T ss_pred CCCeEEEEcc--cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHH---hcCCc---EEecCCChHHHHHhcCCCcEEE
Confidence 4678888854 7899888888888884 788888876433 2222 22321 222221111111 113578886
Q ss_pred eccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 420 SELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 420 SEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
- ..| .+..+..+.+.|+++|.++-.
T Consensus 250 d-~~g-------~~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 250 D-TVP-------VFHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred E-CCC-------chHHHHHHHHHhccCCEEEEE
Confidence 4 222 123555566789999987643
No 474
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=55.70 E-value=38 Score=33.80 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=38.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
.+++||.||.|.=.. .-++.....|+ +|+.|+...... ++..... ++ |+++.++...-.+ ..+|+||.
T Consensus 8 ~gk~vlVvGgG~va~--rk~~~Ll~~ga--~VtVvsp~~~~~--l~~l~~~---~~-i~~~~~~~~~~dl-~~~~lVi~ 75 (205)
T TIGR01470 8 EGRAVLVVGGGDVAL--RKARLLLKAGA--QLRVIAEELESE--LTLLAEQ---GG-ITWLARCFDADIL-EGAFLVIA 75 (205)
T ss_pred CCCeEEEECcCHHHH--HHHHHHHHCCC--EEEEEcCCCCHH--HHHHHHc---CC-EEEEeCCCCHHHh-CCcEEEEE
Confidence 467899999986333 33444445665 666665543211 1111222 23 9998877653333 56898887
No 475
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=55.69 E-value=40 Score=36.51 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHH
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSA 382 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a 382 (626)
++.+||..|+ .|.++.+++.+++..|. ++++++.++.-
T Consensus 193 ~g~~vlV~ga-~g~iG~a~~~lak~~G~--~vv~~~~s~~~ 230 (393)
T cd08246 193 PGDNVLIWGA-SGGLGSMAIQLARAAGA--NPVAVVSSEEK 230 (393)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHcCC--eEEEEeCCHHH
Confidence 5678999987 57788888888888884 77888877643
No 476
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=55.65 E-value=41 Score=35.38 Aligned_cols=92 Identities=21% Similarity=0.256 Sum_probs=53.5
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEec---cc---ccCCCCCc
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSED---MR---TWNAPEKA 415 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D---~~---~~~~p~k~ 415 (626)
++.+||..|+ |.++.++++.++..|.+ +|+++..++.....++ ..+. -+++..+ .+ .......+
T Consensus 159 ~~~~vlI~g~--g~~g~~~~~lA~~~G~~-~v~~~~~~~~~~~~l~---~~g~----~~~~~~~~~~~~~~~~~~~~~~~ 228 (343)
T cd08236 159 LGDTVVVIGA--GTIGLLAIQWLKILGAK-RVIAVDIDDEKLAVAR---ELGA----DDTINPKEEDVEKVRELTEGRGA 228 (343)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCC-EEEEEcCCHHHHHHHH---HcCC----CEEecCccccHHHHHHHhCCCCC
Confidence 4568888874 66888888888877752 4999987764432222 1222 1222211 11 12222459
Q ss_pred cEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 416 DIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 416 DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
|+++.- .+ ....+..+.+.|+++|.++-
T Consensus 229 d~vld~----~g----~~~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 229 DLVIEA----AG----SPATIEQALALARPGGKVVL 256 (343)
T ss_pred CEEEEC----CC----CHHHHHHHHHHhhcCCEEEE
Confidence 999862 11 13355666788899998763
No 477
>PRK07904 short chain dehydrogenase; Provisional
Probab=55.33 E-value=52 Score=33.33 Aligned_cols=75 Identities=19% Similarity=0.153 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCCchHHHHHHHH-HhhcCCccEEEEEeCCHH--HHHHHHHHHHcCCCCCcEEEEEecccccCC-------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNA-AKEANRKVRVYAVEKNMS--AVVGLKYKKEEQWAQSDVTIVSEDMRTWNA------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~A-a~~~g~~~~V~AVE~np~--a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~------- 411 (626)
.+++||..||++| ++..+++. +++.| .+|++++.++. ...+.+.+...+ ..+ ++++.+|+.+...
T Consensus 7 ~~~~vlItGas~g-iG~~la~~l~~~gg--~~V~~~~r~~~~~~~~~~~~l~~~~-~~~-v~~~~~D~~~~~~~~~~~~~ 81 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLKNAP--ARVVLAALPDDPRRDAAVAQMKAAG-ASS-VEVIDFDALDTDSHPKVIDA 81 (253)
T ss_pred CCcEEEEEcCCcH-HHHHHHHHHHhcCC--CeEEEEeCCcchhHHHHHHHHHhcC-CCc-eEEEEecCCChHHHHHHHHH
Confidence 4578999999655 55554544 33333 48888888754 223333333332 224 9999999876431
Q ss_pred ---CCCccEEEec
Q psy17734 412 ---PEKADIMVSE 421 (626)
Q Consensus 412 ---p~k~DiIVSE 421 (626)
..++|++|..
T Consensus 82 ~~~~g~id~li~~ 94 (253)
T PRK07904 82 AFAGGDVDVAIVA 94 (253)
T ss_pred HHhcCCCCEEEEe
Confidence 1479988864
No 478
>KOG0821|consensus
Probab=55.30 E-value=16 Score=37.18 Aligned_cols=62 Identities=24% Similarity=0.373 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN 410 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~ 410 (626)
...-|..+|.|.|.++...+.|+. .+...||+++...-.+|.++... ..+ ..+.++|+-.++
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~-----~RL~vVE~D~RFip~LQ~L~EAa-~~~-~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADV-----ARLLVVEKDTRFIPGLQMLSEAA-PGK-LRIHHGDVLRFK 111 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcch-----hheeeeeeccccChHHHHHhhcC-Ccc-eEEeccccceeh
Confidence 456799999999999988777765 48888999887666666665432 234 888888875543
No 479
>PRK06500 short chain dehydrogenase; Provisional
Probab=55.19 E-value=55 Score=32.46 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------- 411 (626)
++++||..|++. .++..+++...+.| .+|++++.++....... . .++.+ +.++.+|..+...
T Consensus 5 ~~k~vlItGasg-~iG~~la~~l~~~g--~~v~~~~r~~~~~~~~~--~--~~~~~-~~~~~~D~~~~~~~~~~~~~~~~ 76 (249)
T PRK06500 5 QGKTALITGGTS-GIGLETARQFLAEG--ARVAITGRDPASLEAAR--A--ELGES-ALVIRADAGDVAAQKALAQALAE 76 (249)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCC--CEEEEecCCHHHHHHHH--H--HhCCc-eEEEEecCCCHHHHHHHHHHHHH
Confidence 456899999865 45555555554456 48999998864332211 1 12344 8888888876531
Q ss_pred -CCCccEEEec
Q psy17734 412 -PEKADIMVSE 421 (626)
Q Consensus 412 -p~k~DiIVSE 421 (626)
-.++|++|..
T Consensus 77 ~~~~id~vi~~ 87 (249)
T PRK06500 77 AFGRLDAVFIN 87 (249)
T ss_pred HhCCCCEEEEC
Confidence 1468998874
No 480
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=55.01 E-value=67 Score=32.14 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=47.8
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--------
Q psy17734 341 TVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-------- 411 (626)
Q Consensus 341 ~~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-------- 411 (626)
.++++++..|++. .++..+++...+.| .+|+.++.++... ...+.++.. +.+ +.++.+|+.+...
T Consensus 9 ~~~k~ilItGas~-~IG~~la~~l~~~G--~~v~~~~r~~~~~~~~~~~~~~~--~~~-~~~~~~Dl~~~~~~~~~~~~~ 82 (256)
T PRK06124 9 LAGQVALVTGSAR-GLGFEIARALAGAG--AHVLVNGRNAATLEAAVAALRAA--GGA-AEALAFDIADEEAVAAAFARI 82 (256)
T ss_pred CCCCEEEEECCCc-hHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHHhc--CCc-eEEEEccCCCHHHHHHHHHHH
Confidence 3578999999754 55655555555556 4899999987543 222223322 344 8899999876431
Q ss_pred ---CCCccEEEec
Q psy17734 412 ---PEKADIMVSE 421 (626)
Q Consensus 412 ---p~k~DiIVSE 421 (626)
-.++|.+|..
T Consensus 83 ~~~~~~id~vi~~ 95 (256)
T PRK06124 83 DAEHGRLDILVNN 95 (256)
T ss_pred HHhcCCCCEEEEC
Confidence 1468999875
No 481
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=55.00 E-value=17 Score=38.68 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=40.5
Q ss_pred eEEEecCCcccccCCccHHHHHHHHHHHHHHHhhhhhhCCC---eEEEc
Q psy17734 76 LIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIP---FIVVS 121 (626)
Q Consensus 76 ~~v~~~s~w~~~~ds~~~~~~~~s~~~l~~e~~~a~~~g~~---~~i~~ 121 (626)
.++.-.+..+ .|.|++|.+++.|.+.|.+++..|..+|+. .|++-
T Consensus 106 rls~Hp~y~i-nL~S~~~ev~e~Si~~L~~~~~~~~~lG~~~~~~vViH 153 (303)
T PRK02308 106 RLSFHPDQFV-VLNSPKPEVVENSIKDLEYHAKLLDLMGIDDSSKINIH 153 (303)
T ss_pred CeeccChhhh-cCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
Confidence 5666667778 999999999999999999999999999999 88884
No 482
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.91 E-value=34 Score=35.71 Aligned_cols=99 Identities=14% Similarity=0.119 Sum_probs=49.8
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHH-HHHHH---HcCCC-CC-----------cEEEEEeccc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVG-LKYKK---EEQWA-QS-----------DVTIVSEDMR 407 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a-~~~~~---~n~~~-~~-----------nV~vi~~D~~ 407 (626)
++|..||+|. ++...+......| .+|+.+|.++..... .+.+. ..+.. .. ++++. .+..
T Consensus 2 ~~V~VIG~G~--mG~~iA~~la~~G--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~ 76 (288)
T PRK09260 2 EKLVVVGAGV--MGRGIAYVFAVSG--FQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYS-LDLK 76 (288)
T ss_pred cEEEEECccH--HHHHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CcHH
Confidence 3688999975 4333334444345 489999999876522 22111 11100 00 12222 2322
Q ss_pred ccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEEec
Q psy17734 408 TWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPY 452 (626)
Q Consensus 408 ~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP~ 452 (626)
+. -..+|+|+.-+... .+...+++..+.+.++++.++.-+
T Consensus 77 ~~--~~~aD~Vi~avpe~---~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 77 AA--VADADLVIEAVPEK---LELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred Hh--hcCCCEEEEeccCC---HHHHHHHHHHHHhhCCCCcEEEEc
Confidence 21 15689998633211 011234566677788888765433
No 483
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=54.91 E-value=40 Score=33.40 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN 379 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n 379 (626)
..+|+.+|||- ++...++.....|. .+++-+|.+
T Consensus 19 ~s~VlviG~gg--lGsevak~L~~~GV-g~i~lvD~d 52 (198)
T cd01485 19 SAKVLIIGAGA--LGAEIAKNLVLAGI-DSITIVDHR 52 (198)
T ss_pred hCcEEEECCCH--HHHHHHHHHHHcCC-CEEEEEECC
Confidence 46899999984 55555666666776 478888744
No 484
>PRK06949 short chain dehydrogenase; Provisional
Probab=54.51 E-value=74 Score=31.75 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
++++|+..|+ +|.++..+++...+.| .+|+++..++... ......... ..+ ++++.+|+.+...
T Consensus 8 ~~k~ilItGa-sg~IG~~~a~~l~~~G--~~Vi~~~r~~~~~~~~~~~l~~~--~~~-~~~~~~D~~~~~~~~~~~~~~~ 81 (258)
T PRK06949 8 EGKVALVTGA-SSGLGARFAQVLAQAG--AKVVLASRRVERLKELRAEIEAE--GGA-AHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHHhc--CCc-EEEEEecCCCHHHHHHHHHHHH
Confidence 5678999995 5566666666665556 4899999887543 222222222 234 8999999876421
Q ss_pred --CCCccEEEecc
Q psy17734 412 --PEKADIMVSEL 422 (626)
Q Consensus 412 --p~k~DiIVSEl 422 (626)
-.++|++|...
T Consensus 82 ~~~~~~d~li~~a 94 (258)
T PRK06949 82 TEAGTIDILVNNS 94 (258)
T ss_pred HhcCCCCEEEECC
Confidence 14689998843
No 485
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=54.39 E-value=55 Score=33.59 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN 379 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n 379 (626)
...+|+.+||| .++..++......|. .+++-+|.+
T Consensus 31 ~~~~VliiG~G--glGs~va~~La~~Gv-g~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLG--GLGCAASQYLAAAGV-GTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCC--HHHHHHHHHHHHcCC-CEEEEEcCC
Confidence 45789999996 454444555556676 478777654
No 486
>PRK10083 putative oxidoreductase; Provisional
Probab=54.34 E-value=82 Score=33.03 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=52.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhh-cCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc-cccC-CCCCccEE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKE-ANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM-RTWN-APEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~-~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~-~~~~-~p~k~DiI 418 (626)
++.+|+..|+ |.++.++++.++. .|+ ..|++++.++......+. .+.... +..-..+. +.+. ....+|++
T Consensus 160 ~g~~vlI~g~--g~vG~~~~~~a~~~~G~-~~v~~~~~~~~~~~~~~~---~Ga~~~-i~~~~~~~~~~~~~~g~~~d~v 232 (339)
T PRK10083 160 EQDVALIYGA--GPVGLTIVQVLKGVYNV-KAVIVADRIDERLALAKE---SGADWV-INNAQEPLGEALEEKGIKPTLI 232 (339)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHH---hCCcEE-ecCccccHHHHHhcCCCCCCEE
Confidence 5678999995 6788888888775 475 368889988754422221 232111 11111111 1111 11235666
Q ss_pred EeccccccCCCCCcHHHHHHHHHhcccCcEEEe
Q psy17734 419 VSELLGSFGDNELSPECLYAAQKYLKEDGISIP 451 (626)
Q Consensus 419 VSEllgsfg~~El~pe~L~~~~r~LkpgGi~IP 451 (626)
+. ..| .+..+....+.|+++|.++=
T Consensus 233 id-~~g-------~~~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 233 ID-AAC-------HPSILEEAVTLASPAARIVL 257 (339)
T ss_pred EE-CCC-------CHHHHHHHHHHhhcCCEEEE
Confidence 54 222 23456666788999998873
No 487
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=54.28 E-value=92 Score=34.41 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=44.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccC----C-CCCccEEE
Q psy17734 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWN----A-PEKADIMV 419 (626)
Q Consensus 345 ~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~----~-p~k~DiIV 419 (626)
+|+.+|+ |.++..+++.....| ..|+.+|.++......+. .. +++++.+|..+-. . .+++|.+|
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g--~~v~vid~~~~~~~~~~~----~~---~~~~~~gd~~~~~~l~~~~~~~a~~vi 70 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGEN--NDVTVIDTDEERLRRLQD----RL---DVRTVVGNGSSPDVLREAGAEDADLLI 70 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCC--CcEEEEECCHHHHHHHHh----hc---CEEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence 5788887 568877677666555 589999999865432221 11 3889999987632 1 26799887
Q ss_pred e
Q psy17734 420 S 420 (626)
Q Consensus 420 S 420 (626)
+
T Consensus 71 ~ 71 (453)
T PRK09496 71 A 71 (453)
T ss_pred E
Confidence 7
No 488
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=54.24 E-value=93 Score=31.80 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN 379 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~n 379 (626)
++..|+..|+ +|.++..+++.++..|. +|++++.+
T Consensus 143 ~g~~vli~g~-~g~~g~~~~~la~~~g~--~v~~~~~~ 177 (319)
T cd08267 143 PGQRVLINGA-SGGVGTFAVQIAKALGA--HVTGVCST 177 (319)
T ss_pred CCCEEEEEcC-CcHHHHHHHHHHHHcCC--EEEEEeCH
Confidence 5678999997 56777777888887785 88888754
No 489
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=54.18 E-value=44 Score=35.39 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----CCCccE
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA----PEKADI 417 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~----p~k~Di 417 (626)
++++||+.|+ +|.++..+++.....|...+|++++.++......+. ... ..+ ++++.+|+++... -+.+|+
T Consensus 3 ~~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~--~~~-~~~-~~~v~~Dl~d~~~l~~~~~~iD~ 77 (324)
T TIGR03589 3 NNKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQ--KFP-APC-LRFFIGDVRDKERLTRALRGVDY 77 (324)
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHH--HhC-CCc-EEEEEccCCCHHHHHHHHhcCCE
Confidence 3578998886 688887777665543311478888876533211111 111 134 9999999988542 146899
Q ss_pred EEe
Q psy17734 418 MVS 420 (626)
Q Consensus 418 IVS 420 (626)
||.
T Consensus 78 Vih 80 (324)
T TIGR03589 78 VVH 80 (324)
T ss_pred EEE
Confidence 987
No 490
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=54.17 E-value=43 Score=33.31 Aligned_cols=68 Identities=10% Similarity=0.180 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
+++.||.+|+|. .+...++.....|+ +|+.|+...... ++..... .. |++.....++-.+ ..+|+||+
T Consensus 9 ~~k~vLVIGgG~--va~~ka~~Ll~~ga--~V~VIs~~~~~~--l~~l~~~---~~-i~~~~~~~~~~~l-~~adlVia 76 (202)
T PRK06718 9 SNKRVVIVGGGK--VAGRRAITLLKYGA--HIVVISPELTEN--LVKLVEE---GK-IRWKQKEFEPSDI-VDAFLVIA 76 (202)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCC--eEEEEcCCCCHH--HHHHHhC---CC-EEEEecCCChhhc-CCceEEEE
Confidence 567999999975 44433444444554 666665442111 1111111 22 7776544433223 56899988
No 491
>PRK09072 short chain dehydrogenase; Provisional
Probab=53.90 E-value=70 Score=32.28 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHH-HHHHHHHcCCCCCcEEEEEecccccCC---------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVV-GLKYKKEEQWAQSDVTIVSEDMRTWNA--------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~-a~~~~~~n~~~~~nV~vi~~D~~~~~~--------- 411 (626)
+++++|..|++. .++..+++...+.| .+|++++.++.... ..+.+ .. +.+ +.++.+|+.+...
T Consensus 4 ~~~~vlItG~s~-~iG~~ia~~l~~~G--~~V~~~~r~~~~~~~~~~~~-~~--~~~-~~~~~~D~~d~~~~~~~~~~~~ 76 (263)
T PRK09072 4 KDKRVLLTGASG-GIGQALAEALAAAG--ARLLLVGRNAEKLEALAARL-PY--PGR-HRWVVADLTSEAGREAVLARAR 76 (263)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHHHH-hc--CCc-eEEEEccCCCHHHHHHHHHHHH
Confidence 356899998765 45555555544456 48999999875432 22222 11 344 9999999987531
Q ss_pred -CCCccEEEec
Q psy17734 412 -PEKADIMVSE 421 (626)
Q Consensus 412 -p~k~DiIVSE 421 (626)
-.++|.+|..
T Consensus 77 ~~~~id~lv~~ 87 (263)
T PRK09072 77 EMGGINVLINN 87 (263)
T ss_pred hcCCCCEEEEC
Confidence 1468999874
No 492
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=53.84 E-value=41 Score=35.34 Aligned_cols=100 Identities=15% Similarity=0.247 Sum_probs=52.7
Q ss_pred CEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHH-------HHcC-C--------CCCcEEEEEecc
Q psy17734 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYK-------KEEQ-W--------AQSDVTIVSEDM 406 (626)
Q Consensus 344 ~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~-------~~n~-~--------~~~nV~vi~~D~ 406 (626)
.+|-.||+|+ .+.-.+......| .+|+.+|.++.+. .+.+.+ ...+ . ..+ +++ ..|.
T Consensus 6 ~~V~ViGaG~--mG~~iA~~~a~~G--~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~-l~~-~~~~ 79 (286)
T PRK07819 6 QRVGVVGAGQ--MGAGIAEVCARAG--VDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALAR-LRF-TTDL 79 (286)
T ss_pred cEEEEEcccH--HHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhC-eEe-eCCH
Confidence 4789999986 3222233333345 5999999998765 322221 1111 1 011 332 2344
Q ss_pred cccCCCCCccEEEeccccccCCCCCcHHHHHHHHHhc-ccCcEEEeccce
Q psy17734 407 RTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYL-KEDGISIPYNYT 455 (626)
Q Consensus 407 ~~~~~p~k~DiIVSEllgsfg~~El~pe~L~~~~r~L-kpgGi~IP~~~t 455 (626)
..+ ..+|+|+--... +-+.-.+++..+.+.+ +|+.++.-++.+
T Consensus 80 ~~~---~~~d~ViEav~E---~~~~K~~l~~~l~~~~~~~~~il~snTS~ 123 (286)
T PRK07819 80 GDF---ADRQLVIEAVVE---DEAVKTEIFAELDKVVTDPDAVLASNTSS 123 (286)
T ss_pred HHh---CCCCEEEEeccc---CHHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence 332 568998763321 1111245666777788 778777644433
No 493
>PLN02650 dihydroflavonol-4-reductase
Probab=53.84 E-value=55 Score=34.85 Aligned_cols=74 Identities=16% Similarity=0.064 Sum_probs=46.4
Q ss_pred CCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHH-HHcCCCCCcEEEEEecccccCC----CCCccE
Q psy17734 343 VTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYK-KEEQWAQSDVTIVSEDMRTWNA----PEKADI 417 (626)
Q Consensus 343 ~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~-~~n~~~~~nV~vi~~D~~~~~~----p~k~Di 417 (626)
.++||..|+ +|.++..+++.....| .+|+++..++......... ...+...+ ++++.+|+++... -..+|.
T Consensus 5 ~k~iLVTGa-tGfIGs~l~~~L~~~G--~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~v~~Dl~d~~~~~~~~~~~d~ 80 (351)
T PLN02650 5 KETVCVTGA-SGFIGSWLVMRLLERG--YTVRATVRDPANVKKVKHLLDLPGATTR-LTLWKADLAVEGSFDDAIRGCTG 80 (351)
T ss_pred CCEEEEeCC-cHHHHHHHHHHHHHCC--CEEEEEEcCcchhHHHHHHHhccCCCCc-eEEEEecCCChhhHHHHHhCCCE
Confidence 457888885 8888888777776556 4888887664322111111 11223334 8999999987532 145898
Q ss_pred EEe
Q psy17734 418 MVS 420 (626)
Q Consensus 418 IVS 420 (626)
||.
T Consensus 81 ViH 83 (351)
T PLN02650 81 VFH 83 (351)
T ss_pred EEE
Confidence 876
No 494
>PLN02702 L-idonate 5-dehydrogenase
Probab=53.80 E-value=1.4e+02 Score=31.78 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=54.1
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEe---ccc----cc--CCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE---DMR----TW--NAP 412 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~---D~~----~~--~~p 412 (626)
++.+||..|+ |.++.++++.++..|++ .|++++.++......+ ..+.. . +..+.. +.. .+ ...
T Consensus 181 ~g~~vlI~g~--g~vG~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~---~~g~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 252 (364)
T PLN02702 181 PETNVLVMGA--GPIGLVTMLAARAFGAP-RIVIVDVDDERLSVAK---QLGAD-E-IVLVSTNIEDVESEVEEIQKAMG 252 (364)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHH---HhCCC-E-EEecCcccccHHHHHHHHhhhcC
Confidence 5678888864 68888888888888863 6899998864432222 12221 1 211111 110 11 112
Q ss_pred CCccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 413 EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 413 ~k~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
.++|+++.- .| .+..+....+.|+++|.++
T Consensus 253 ~~~d~vid~-~g-------~~~~~~~~~~~l~~~G~~v 282 (364)
T PLN02702 253 GGIDVSFDC-VG-------FNKTMSTALEATRAGGKVC 282 (364)
T ss_pred CCCCEEEEC-CC-------CHHHHHHHHHHHhcCCEEE
Confidence 468988762 11 1335666778899999876
No 495
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=53.70 E-value=55 Score=34.16 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCCch---HHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCCCCCccEE
Q psy17734 342 VVTTIMVVGAGRGP---LVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIM 418 (626)
Q Consensus 342 ~~~~VLDvG~GtG~---Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiI 418 (626)
..++||-+|||+-- =+...++.= .-....++-.|.++ -.+|. -..+.+|.+.+..+.++|+|
T Consensus 61 ~nMrVlHlGAgSdkGvaPGt~VLrqw--lP~~ailvDnDi~d------------~vSDa-~~~~~~Dc~t~~~~~k~DlI 125 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPGTAVLRQW--LPEDAILVDNDIRD------------YVSDA-DQSIVGDCRTYMPPDKFDLI 125 (299)
T ss_dssp TT-EEEEES---TTSB-HHHHHHHHH--S-TT-EEEEEESS--------------B-SS-SEEEES-GGGEEESS-EEEE
T ss_pred cCcEEEEecccccCCcCCchHHHHHh--CCCCcEEEecchhh------------hcccc-CCceeccccccCCCCcccEE
Confidence 45899999998521 111112211 11124777777764 12344 55677899999889999999
Q ss_pred Eecccc--------ccCCCCCcHHHH-HHHHHhcccCcEEE
Q psy17734 419 VSELLG--------SFGDNELSPECL-YAAQKYLKEDGISI 450 (626)
Q Consensus 419 VSEllg--------sfg~~El~pe~L-~~~~r~LkpgGi~I 450 (626)
||++-+ .-...|..-..+ .-++..|+-||.+.
T Consensus 126 iSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSva 166 (299)
T PF06460_consen 126 ISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVA 166 (299)
T ss_dssp EE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEE
T ss_pred EEecccccccccccccCCccccHHHHHHHHHhhhhcCceEE
Confidence 998852 112223332233 33456788888754
No 496
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=53.69 E-value=51 Score=34.66 Aligned_cols=91 Identities=23% Similarity=0.232 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecc-------cccCCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDM-------RTWNAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~-------~~~~~p~k 414 (626)
++.+|+..| .|.++.++++.++..|.+ .|++++.++......+ ..+. -.++..+- ........
T Consensus 168 ~g~~vlI~g--~g~vg~~~~~lak~~G~~-~v~~~~~~~~~~~~~~---~~ga----~~v~~~~~~~~~~~i~~~~~~~~ 237 (345)
T cd08287 168 PGSTVVVVG--DGAVGLCAVLAAKRLGAE-RIIAMSRHEDRQALAR---EFGA----TDIVAERGEEAVARVRELTGGVG 237 (345)
T ss_pred CCCEEEEEC--CCHHHHHHHHHHHHcCCC-EEEEECCCHHHHHHHH---HcCC----ceEecCCcccHHHHHHHhcCCCC
Confidence 456777765 478888888888888852 6899998864322111 2222 12222211 11112246
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+|+++. ..| .+..+..+.+.|+++|.++
T Consensus 238 ~d~il~-~~g-------~~~~~~~~~~~l~~~g~~v 265 (345)
T cd08287 238 ADAVLE-CVG-------TQESMEQAIAIARPGGRVG 265 (345)
T ss_pred CCEEEE-CCC-------CHHHHHHHHHhhccCCEEE
Confidence 898875 221 2446677778889999876
No 497
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=53.67 E-value=1.3e+02 Score=27.73 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=40.4
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHH-HHHHHHcCCCCCcEEEEEecccccCCCCCccEEEe
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVG-LKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVS 420 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a-~~~~~~n~~~~~nV~vi~~D~~~~~~p~k~DiIVS 420 (626)
++++|+.+|+| .++...+++....|. .+|+.++.++..... .+...... +.....|..+. -+.+|+||+
T Consensus 18 ~~~~i~iiG~G--~~g~~~a~~l~~~g~-~~v~v~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~Dvvi~ 87 (155)
T cd01065 18 KGKKVLILGAG--GAARAVAYALAELGA-AKIVIVNRTLEKAKALAERFGELG-----IAIAYLDLEEL--LAEADLIIN 87 (155)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHhhcc-----cceeecchhhc--cccCCEEEe
Confidence 45789999985 455555555554432 489999998754322 22211110 11222233332 267999998
Q ss_pred cccc
Q psy17734 421 ELLG 424 (626)
Q Consensus 421 Ellg 424 (626)
-...
T Consensus 88 ~~~~ 91 (155)
T cd01065 88 TTPV 91 (155)
T ss_pred CcCC
Confidence 6543
No 498
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=53.47 E-value=54 Score=32.97 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=45.8
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccccCC----------
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA---------- 411 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~~~~---------- 411 (626)
+++++|..|+. |.++..+++...+.| .+|++++.+...... +.+.. .+.+ +..+..|+.+.+.
T Consensus 9 ~~k~~lItG~~-~gIG~a~a~~l~~~G--~~vv~~~~~~~~~~~-~~~~~--~~~~-~~~~~~Dl~~~~~~~~~~~~~~~ 81 (253)
T PRK08993 9 EGKVAVVTGCD-TGLGQGMALGLAEAG--CDIVGINIVEPTETI-EQVTA--LGRR-FLSLTADLRKIDGIPALLERAVA 81 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCC--CEEEEecCcchHHHH-HHHHh--cCCe-EEEEECCCCCHHHHHHHHHHHHH
Confidence 46789999975 556666666665556 488888876432222 22222 2344 8889999876421
Q ss_pred -CCCccEEEec
Q psy17734 412 -PEKADIMVSE 421 (626)
Q Consensus 412 -p~k~DiIVSE 421 (626)
..++|++|..
T Consensus 82 ~~~~~D~li~~ 92 (253)
T PRK08993 82 EFGHIDILVNN 92 (253)
T ss_pred HhCCCCEEEEC
Confidence 1478999874
No 499
>PRK07831 short chain dehydrogenase; Provisional
Probab=53.41 E-value=70 Score=32.26 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=46.4
Q ss_pred CCCEEEEEcCC-CchHHHHHHHHHhhcCCccEEEEEeCCHHHH-HHHHHHHHcCCCCCcEEEEEecccccCC--------
Q psy17734 342 VVTTIMVVGAG-RGPLVTASLNAAKEANRKVRVYAVEKNMSAV-VGLKYKKEEQWAQSDVTIVSEDMRTWNA-------- 411 (626)
Q Consensus 342 ~~~~VLDvG~G-tG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~-~a~~~~~~n~~~~~nV~vi~~D~~~~~~-------- 411 (626)
+++++|..|++ +| ++..+++.....| .+|+.++.++... ...+.++. .++..++.++.+|+.+...
T Consensus 16 ~~k~vlItG~sg~g-IG~~ia~~l~~~G--~~V~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 91 (262)
T PRK07831 16 AGKVVLVTAAAGTG-IGSATARRALEEG--ARVVISDIHERRLGETADELAA-ELGLGRVEAVVCDVTSEAQVDALIDAA 91 (262)
T ss_pred CCCEEEEECCCccc-HHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHH-hcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 45789999974 44 4444455555456 4799999886543 33333322 1222138899999876421
Q ss_pred ---CCCccEEEecc
Q psy17734 412 ---PEKADIMVSEL 422 (626)
Q Consensus 412 ---p~k~DiIVSEl 422 (626)
-+++|++|..-
T Consensus 92 ~~~~g~id~li~~a 105 (262)
T PRK07831 92 VERLGRLDVLVNNA 105 (262)
T ss_pred HHHcCCCCEEEECC
Confidence 14789988743
No 500
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=53.34 E-value=41 Score=35.32 Aligned_cols=91 Identities=21% Similarity=0.224 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCchHHHHHHHHHhhcCCccEEEEEeCCHHHHHHHHHHHHcCCCCCcEEEEEecccc-------cCCCCC
Q psy17734 342 VVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT-------WNAPEK 414 (626)
Q Consensus 342 ~~~~VLDvG~GtG~Ls~~al~Aa~~~g~~~~V~AVE~np~a~~a~~~~~~n~~~~~nV~vi~~D~~~-------~~~p~k 414 (626)
++.+||..|+ |.++.++++.++..|.+ .|+++..++.-...++. .+. -.++..+-.+ ......
T Consensus 165 ~g~~VlV~g~--g~vg~~~~~la~~~g~~-~v~~~~~s~~~~~~~~~---~g~----~~~~~~~~~~~~~~i~~~~~~~~ 234 (343)
T cd08235 165 PGDTVLVIGA--GPIGLLHAMLAKASGAR-KVIVSDLNEFRLEFAKK---LGA----DYTIDAAEEDLVEKVRELTDGRG 234 (343)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHcCCc-EEEEECCCHHHHHHHHH---hCC----cEEecCCccCHHHHHHHHhCCcC
Confidence 5678888874 56888888888877752 38888887644322221 122 1223222111 112245
Q ss_pred ccEEEeccccccCCCCCcHHHHHHHHHhcccCcEEE
Q psy17734 415 ADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISI 450 (626)
Q Consensus 415 ~DiIVSEllgsfg~~El~pe~L~~~~r~LkpgGi~I 450 (626)
+|+++.-. + ....+....+.|+++|.++
T Consensus 235 vd~vld~~----~----~~~~~~~~~~~l~~~g~~v 262 (343)
T cd08235 235 ADVVIVAT----G----SPEAQAQALELVRKGGRIL 262 (343)
T ss_pred CCEEEECC----C----ChHHHHHHHHHhhcCCEEE
Confidence 89998521 1 1235666667889999876
Done!