RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17734
(626 letters)
>gnl|CDD|218484 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase. The human
homologue of yeast Skb1 (Shk1 kinase-binding protein 1)
is PRMT5, an arginine-N-methyltransferase. These
proteins appear to be key mitotic regulators. They play
a role in Jak signalling in higher eukaryotes.
Length = 445
Score = 591 bits (1526), Expect = 0.0
Identities = 209/449 (46%), Positives = 282/449 (62%), Gaps = 20/449 (4%)
Query: 171 DTWRWWNMFRSVTNYHSKFELALEINGDICDDHELTRWLGEPLRCVFIPTHVFQTNKAGY 230
TW WN R++ NY ++ALE+ D+ L RWL EP++ + + + +F TN+ GY
Sbjct: 4 STWELWNTIRTLCNYSPNLKVALELPRDLPSKEVLERWLAEPVKALILSSSIFLTNQKGY 63
Query: 231 PVLNASLANFIKKILEKN-LQVVIQG----------VNRHQSYLHYVQYMQYLKKSSHSD 279
PVL+ + + + N +++ G Y++Y++YL K
Sbjct: 64 PVLSKAHQALLTRFFRLNNPIILLLGELGPILHGMEKESDHDLTPYLKYLKYLLKKQPPL 123
Query: 280 DPLSMAAQDFEDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQA 339
+EDYLQ PLQPL+++L S TYEVFEKDP+KY +Y+ A+++ALLDRV ++
Sbjct: 124 SEQEKFESGYEDYLQAPLQPLSDNLESQTYEVFEKDPVKYDQYERAIRKALLDRVPEKKK 183
Query: 340 DTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGL-KYKKEEQWAQSD 398
+ I+VVGAGRGPLV +L AA+E RKV++YAVEKN +AVV L K E+W
Sbjct: 184 TSSTLVILVVGAGRGPLVDRALKAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDK- 242
Query: 399 VTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYI 458
VTI+S DMR W PEKADI+VSELLGSFGDNELSPECL AQ++LK DGISIP +YTSY+
Sbjct: 243 VTIISSDMREWKGPEKADILVSELLGSFGDNELSPECLDGAQRFLKPDGISIPQSYTSYL 302
Query: 459 APIMSHKLFTQVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAP-PQPCFTFVHPSEDKDP 517
API S KL+ +VKS + FE PYVV ++ Y ++ Q C++F HP+ D++
Sbjct: 303 APISSPKLYQKVKSMSDPKA------FETPYVVRLKSYYKLSEEVQECWSFEHPNRDENS 356
Query: 518 DNSRYTKATFIAEQDSVLHGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPI 577
N RY F + D VLHG AGYFD LYKD+ LSI P+T +P +ISWFP+ FP+ +P+
Sbjct: 357 HNERYKTLEFKIKHDGVLHGFAGYFDAVLYKDVELSILPNTHTPNMISWFPIFFPLKKPV 416
Query: 578 QLKTNDEIEVHFWRLCDNVKVWYEWLVTK 606
+K E+ VH WR DN KVWYEW V
Sbjct: 417 YVKKGQELSVHIWRKTDNRKVWYEWSVES 445
>gnl|CDD|173550 PTZ00357, PTZ00357, methyltransferase; Provisional.
Length = 1072
Score = 155 bits (392), Expect = 2e-39
Identities = 118/426 (27%), Positives = 177/426 (41%), Gaps = 99/426 (23%)
Query: 279 DDPLSMAAQDFEDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAV------------ 326
++P FE LQ PLQPL++ LSS YEVFE+D KY +Y+EAV
Sbjct: 612 EEPTRDVFASFEGQLQLPLQPLSHHLSSGVYEVFERDARKYRQYREAVFHYVRDWYAAGA 671
Query: 327 -------------QQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRV 373
+ ++ RV D ++++G GRGPL+ L+A ++R+
Sbjct: 672 EQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAVSALGVRLRI 731
Query: 374 YAVEKNM--SAVVGLKYKKEEQWAQSDVT------IVSEDMRTWNAPEK----------- 414
+A+EKN+ +A +++ + +W Q T ++ D RT +
Sbjct: 732 FAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFG 791
Query: 415 -ADIMVSELLGSFGDNELSPECLYAAQKYLKE----DGIS-------IPYNYTSYIAPIM 462
D++VSELLGS GDNELSPECL A L++ GI+ IP YT+++AP+M
Sbjct: 792 LCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGIAFNPHLMCIPQQYTAWVAPLM 851
Query: 463 SHKLFTQVKSSMIKE--------HQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSED 514
S V + +K H H V +APPQPC+TF H
Sbjct: 852 SATFDAAVTEAAVKGLTVPPPGCHDHHAALNHTLLVTNLSRAVTLAPPQPCWTFEHRFHG 911
Query: 515 KDPDNSRYTKATFIAEQDSVLH----------------GIAGYFDTFLYKDIN-----LS 553
++ + + + L G+AGYF LY+ ++
Sbjct: 912 GSDNDYKGDRGAMKRREPVSLERAASLLFEVPPCGRCCGLAGYFSAVLYQSATAPATIIA 971
Query: 554 IHPDTLSPGLISWFPVLFPIHEPIQLKTND------------EIEVHFWRLC--DNVKVW 599
P + + SWFP +F + Q + D I V R +VW
Sbjct: 972 TAPVERTEDMYSWFPCVFALEPAQQAELQDVGQAAAEESRMVAIRVQLDRRTSLAEQRVW 1031
Query: 600 YEWLVT 605
YEW VT
Sbjct: 1032 YEWSVT 1037
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of
this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8
P11096, cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Length = 295
Score = 40.8 bits (96), Expect = 0.001
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 6/116 (5%)
Query: 337 EQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQ 396
EQ +VV G G L KE +RV VE + + + + +
Sbjct: 153 EQLGQGDPDAVVVPVGGGGLAAGIARGLKELGPGIRVIGVEPEGAPALA-RSLEAGRRVP 211
Query: 397 SDVTIVSEDMRTWNAPEKADIMVSELLGSFG--DNELSPECLYAAQKYLKEDGISI 450
TI E A ++ E +G +E E L A + + +GI +
Sbjct: 212 KPTTIAGLGPGIPLDGELALELIDEYVGDVYAVSDE---EALEAIRLLARREGILV 264
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 37.4 bits (87), Expect = 0.003
Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 12/112 (10%)
Query: 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE 404
++ GAG G A L AA A RV VE + A + + V +V
Sbjct: 3 RVLDPGAGSG----AFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVG 58
Query: 405 DMRT--WNAPEKADIMV-----SELLGSFGDN-ELSPECLYAAQKYLKEDGI 448
D R D+++ G DN +L L AA + LK G+
Sbjct: 59 DARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGV 110
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 34.2 bits (79), Expect = 0.055
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE 404
+ +GAG G + ++ AA+ RVYA+E+N + L + ++ S++ IV
Sbjct: 22 VLWDIGAGTG---SVTIEAAR-LVPNGRVYAIERN-PEALDLIERNLRRFGVSNIVIVEG 76
Query: 405 DMRTW--NAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGI 448
D + D + +G G L E L A ++ L+ G
Sbjct: 77 DAPEAPEDLLPDPDAVF---VG--GSGGLLQEILEAVERRLRPGGR 117
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 34.2 bits (78), Expect = 0.24
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 12/60 (20%)
Query: 518 DNSRYTKATFIAEQDSVLHGIAGYFDTFLYKDINL----SIHPDTLSPGLISWFPVLFPI 573
D++RYT T+I D L D L K++ + P L+ ISWFP+L I
Sbjct: 62 DSNRYT--TYIPVNDPKL------LDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLI 113
>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase.
Length = 323
Score = 33.8 bits (77), Expect = 0.25
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVV 384
I+V G G G T KE N+ ++V VE SAV+
Sbjct: 177 ILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVL 215
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 32.0 bits (73), Expect = 1.1
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 24/112 (21%)
Query: 363 AAKEANRKVRVYAVEKNMSAVV-GLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421
AA N +V VE ++A+V +K + A S V +S+ V
Sbjct: 258 AATNYNNRV----VECRLAAIVLAVKLGMSAEEAISKVKTLSD--------------VEG 299
Query: 422 LLGSFGDNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSS 473
L SF + S + A ++ L E PY I I+ L + K+S
Sbjct: 300 LCVSFAGSHGSSDPAVAVKELLHEG----PYT-AEEIEEILGESLTSIFKNS 346
>gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase.
Length = 572
Score = 31.9 bits (72), Expect = 1.3
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 320 IRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN 379
I Y E ++Q L+D P +AD ++V G V A L AAK + ++
Sbjct: 216 INYTERLEQDLIDNPPPTEADVEAARLIVKERGE---VVAQLKAAKASKEEI-------- 264
Query: 380 MSAVVGLKYKKE 391
+AV LK KE
Sbjct: 265 TAAVAELKIAKE 276
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 30.9 bits (70), Expect = 1.5
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE 404
I+ +G G G + ++ A+ +VYAV+K+ A + L + E++ + ++ +
Sbjct: 43 MILDIGCGTG---SVTVEASLLVGETGKVYAVDKDEKA-INLTRRNAEKFGVLNNIVLIK 98
Query: 405 DMRTWNAPEKADIMVSELLGSF--GDNELSPECLYAAQKYLKEDGI 448
APE + + F G +E E + A+ + +K+ G
Sbjct: 99 G----EAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGR 140
>gnl|CDD|217771 pfam03870, RNA_pol_Rpb8, RNA polymerase Rpb8. Rpb8 is a subunit
common to the three yeast RNA polymerases, pol I, II and
III. Rpb8 interacts with the largest subunit Rpb1, and
with Rpb3 and Rpb11, two smaller subunits.
Length = 137
Score = 30.1 bits (68), Expect = 1.6
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 514 DKDPDNSRYTKATFIAEQDSVLHGIAGYFDTFLYKDINLSIHP 556
DPD +Y + S + + F L DIN ++P
Sbjct: 8 SVDPDGKKYDRV-------SRIEAESESFKMELILDINSQLYP 43
>gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase.
Length = 368
Score = 30.7 bits (69), Expect = 2.1
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 309 YEVFEKDPIKYIRYQ---EAVQQALLDRVSPE-QADTV-VTTIMVVGAGRGPLVTASLNA 363
YE+ E P ++ Q A Q + PE DT+ I V+G G G V+
Sbjct: 177 YELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKY 236
Query: 364 AKEANRKVRVYAVEKNMSAVV 384
K N V++Y VE S V+
Sbjct: 237 LKSKNPNVKIYGVEPAESNVL 257
>gnl|CDD|172313 PRK13775, PRK13775, formimidoylglutamase; Provisional.
Length = 328
Score = 30.7 bits (69), Expect = 2.3
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 233 LNASLANFIKKILEKNLQVVIQGVNRHQSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDY 292
L SL+ IK++ + NL+ ++ G +Y HY+ L++S D L++ D
Sbjct: 108 LQNSLSKAIKRMCDLNLKPIVLGGGHETAYGHYLG----LRQSLSPSDDLAVINMD---- 159
Query: 293 LQFPLQP 299
F L+P
Sbjct: 160 AHFDLRP 166
>gnl|CDD|165216 PHA02889, PHA02889, hypothetical protein; Provisional.
Length = 241
Score = 29.6 bits (66), Expect = 3.8
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 39 LVHPRFARHKDVDRYRVFGLPEAQVQSLSSICPQWLKLIVCDIQCKLKD-FESKYVERRD 97
+ H Y+++ L L IC + +IVC I CK K F K +++ D
Sbjct: 157 IEHTNNTTKNFFHNYKLYNL------ILIPICTLIIIIIVCYISCKHKTCFFKKKIDKID 210
Query: 98 HAKDL----LHQELE 108
+D LH + E
Sbjct: 211 DIEDFILIKLHPDKE 225
>gnl|CDD|197821 smart00658, RPOL8c, RNA polymerase subunit 8. subunit of RNA
polymerase I, II and III.
Length = 143
Score = 28.5 bits (64), Expect = 5.4
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 513 EDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTFLYKDINLSIHP 556
+ DPD ++ K S + + Y L DIN I+P
Sbjct: 12 KSVDPDGKKFDKV-------SRIFAESEYLQMELILDINSEIYP 48
>gnl|CDD|202059 pfam01950, FBPase_3, Fructose-1,6-bisphosphatase. This is a family
of bacterial and archaeal fructose-1,6-bisphosphatases
(FBPases). FBPase catalyzes the hydrolysis of
D-fructose-1,6-bisphosphate (FBP) to
D-fructose-6-phosphate (F6P) and orthophosphate and is
an essential regulatory enzyme in the glyconeogenic
pathway.
Length = 363
Score = 29.5 bits (67), Expect = 5.9
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 15/60 (25%)
Query: 414 KADIMVSELLGSF-GDNELSPECLYAAQKYLKE---DGISIPYNYTSY----IAPIMSHK 465
KAD+ G G + P+ L AA++ L E G+ I Y Y ++ IA IM+H
Sbjct: 9 KADV------GGIGGHTRVHPKLLEAAEEVLAEAKDGGLLIDY-YVTHCGDDIALIMTHT 61
>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 29.2 bits (66), Expect = 7.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 351 AGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLK 387
AG GP S+ AK + +VYA++ N AV LK
Sbjct: 197 AGVGPF---SIPIAK--KGRPKVYAIDINPDAVEYLK 228
>gnl|CDD|119312 pfam10792, DUF2605, Protein of unknown function (DUF2605). This
family is conserved in Cyanobacteria. The function is
not known.
Length = 99
Score = 27.2 bits (61), Expect = 7.8
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 297 LQPLANDLSSFTY------EVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVG 350
L+PL D F + E+ E +PI ++ +E QQALL+RV Q + V+ T +
Sbjct: 13 LEPLLED---FQHWFQRSRELLETEPISFMSPEE--QQALLERVKEAQKE-VIATRALFQ 66
Query: 351 AGRGP 355
A
Sbjct: 67 ATDQQ 71
>gnl|CDD|181285 PRK08199, PRK08199, thiamine pyrophosphate protein; Validated.
Length = 557
Score = 29.1 bits (66), Expect = 8.9
Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 8/38 (21%)
Query: 104 HQELEYITYLGIPFIVV--SLDQPDFCNFARTLYAHSE 139
HQE EY P V L PDF AR H E
Sbjct: 478 HQEREY------PGRVSGTDLTNPDFAALARAYGGHGE 509
>gnl|CDD|225162 COG2253, COG2253, Uncharacterized conserved protein [Function
unknown].
Length = 258
Score = 28.6 bits (64), Expect = 9.3
Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 27/144 (18%)
Query: 83 CKLKDFESKYVE--RRDHAKDLLHQELEYI-TYLGIPFIVVSLDQPDFCNFARTLYAHSE 139
L D ++ E +H + H L Y+ T LG IV+ F L E
Sbjct: 80 RDLIDTVTERSEFTVSEHRESRRHYPLHYVDTELGYNRIVLDH------EFYTRLLVLVE 133
Query: 140 KNMSYTAWIKVPIRPVD-TSMLRQQEEEP-------------SSQDTWRWWNMFRSVTNY 185
+N+ A+IKVP +MLR E ++D + + + +
Sbjct: 134 ENV---AFIKVPFHHSYPITMLRVYSLEEIFAEKLRALFQRTLARDLYDVFKLLDMEKDE 190
Query: 186 HSKFELALEINGDICDDHELTRWL 209
KF + L+ D D E L
Sbjct: 191 -IKFLVVLKALEDKYDIKEGDFDL 213
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,031,435
Number of extensions: 3100905
Number of successful extensions: 2836
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2826
Number of HSP's successfully gapped: 31
Length of query: 626
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 523
Effective length of database: 6,369,140
Effective search space: 3331060220
Effective search space used: 3331060220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)