RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17734
(626 letters)
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 465 bits (1197), Expect = e-156
Identities = 199/681 (29%), Positives = 303/681 (44%), Gaps = 89/681 (13%)
Query: 18 YNIQSQIESLAAECFDYAVLPLVHPRFARHK----DVDRYRVFGLPEAQVQSLSSICPQW 73
++ + L +++ V P+ A + V LP+ Q+++ W
Sbjct: 68 RHVATFCTRLGEFKYNFVVYPIGGVVRAFWTPNGSAENHPPVIDLPDVQLRN-----DLW 122
Query: 74 LKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDFCNFART 133
+V I + D +S +++ L +EL YI YLG+ + + L + A
Sbjct: 123 ESYVVGKISPWI-DCDSSDPAFASLSEEHLLKELSYICYLGLQTMAIELTRISSPRTAAI 181
Query: 134 LYAH-SEKNMSYTAWIKVPIRPVDTSMLRQQEEEPSSQDTWRWWNMFRSVTNYHS--KFE 190
L +N +T W+++P D W W FR S F+
Sbjct: 182 LKKWIWTRNSRFTVWVQLPS--AIEKCKDYDAFTIEHVDLWTIWADFRKNCGNFSGVYFQ 239
Query: 191 LALEINGDICDD----HELTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLANFIKKILE 246
+AL I+ ++ D+ + RW EPL I + +F + + G + ++ N +K +
Sbjct: 240 VALTISSELPDELTELKLVDRWKAEPLAAFVIESGLFISGRNGEASIPSAHINLLKHLWT 299
Query: 247 KNLQVVIQGVNRH------QSYLHYVQYMQYLKK-----------SSHSDDPLSMAAQDF 289
+ ++ Y Q +++ + +D + ++
Sbjct: 300 TDALRIVLRATTDTFKYNTSIKSEYSQALRHAVRNVNYRSRPDVGEGSNDSTHYLNVIEY 359
Query: 290 EDYLQFPLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVV 349
+D LQ PLQPL+ +L S Y FE+D IKY Y EAV AL D + + V+ ++
Sbjct: 360 KDVLQAPLQPLSENLDSGVYNTFEQDQIKYDVYGEAVVGALKDLGADGRKTVVI---YLL 416
Query: 350 GAGRGPLVTASLNAAKEANR---------KVRVYAVEKNMSAVVGLKYKKEEQWAQSDVT 400
G GRGP+ T L + +E N KV++Y VEKN +A+V LKY W + VT
Sbjct: 417 GGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTW-KRRVT 475
Query: 401 IVSEDMRTWNAP------EKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGISIPYNY 454
I+ DMR+ E+ DI+VSELLGSFGDNELSPECL +LK ISIP Y
Sbjct: 476 IIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIPQKY 535
Query: 455 TSYIAPIMSHKLFTQVKSSMIKEHQ--------------------------HPLYRFEQP 488
TSY+ PIMS + +K+ I H +Q
Sbjct: 536 TSYVKPIMSTHIHQTIKAQSIPYLSRAIPSHGRGEPELDEDEMWIQKYPQGHVRNNMDQI 595
Query: 489 YVVYQRNKYNIAP-PQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTFLY 547
YVVY +A +P FTF HP+ + N R F+ ++++ L G AGYFD LY
Sbjct: 596 YVVYLSKYIPLAETTKPVFTFEHPNFM-NSSNERSDSIEFVMDRNADLMGFAGYFDLQLY 654
Query: 548 KDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVKVWYEWLVTK- 606
K + LSI P T +PG++SWFP + P+ + +++ D I + R DN VWYEW V K
Sbjct: 655 KTVMLSIEPSTHTPGMVSWFPAVIPLRDQLRVGEGDRISLKIDRKVDNTGVWYEWHVEKK 714
Query: 607 -----PTPSPIYNLDGRSYKM 622
+PI N +G SY M
Sbjct: 715 KTNGESVSTPIQNPNGESYYM 735
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 198 bits (504), Expect = 3e-58
Identities = 66/333 (19%), Positives = 117/333 (35%), Gaps = 34/333 (10%)
Query: 309 YEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEAN 368
+ +D ++ YQ A+ Q D D +V + VG G G L S AA+
Sbjct: 25 QQNMMQDYVRTGTYQRAILQNHTDF-----KDKIV---LDVGCGSGIL---SFFAAQAGA 73
Query: 369 RKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGD 428
RK+ YAVE + A K + ++ + + PE+ DI++SE +G
Sbjct: 74 RKI--YAVEASTMAQHAEVLVKSNNLTD-RIVVIPGKVEEVSLPEQVDIIISEPMGYMLF 130
Query: 429 NELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIKEHQHPLY----- 483
NE E A+KYLK G P ++AP +L+ + + +Q +
Sbjct: 131 NERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLS 190
Query: 484 ---------RFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSV 534
F QP V + + +T + + F +
Sbjct: 191 ALRGAAVDEYFRQPVVDTFDIRI-LMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGL 249
Query: 535 LHGIAGYFDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCD 594
+HG+A +FD I + L W+ V P+ K D + + +
Sbjct: 250 VHGLAFWFDVAFIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIAN 309
Query: 595 -----NVKVWYEWLVTKPTPSPIYNLDGRSYKM 622
++ + + T S + +L ++
Sbjct: 310 KRQSYDISIVAQVDQTGSKSSNLLDLKNPFFRY 342
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 200 bits (510), Expect = 1e-57
Identities = 74/382 (19%), Positives = 130/382 (34%), Gaps = 46/382 (12%)
Query: 265 YVQYMQYLKKSSHSDDPLSMAAQ-----DFEDYLQFPLQPLANDLSSFTYEVFEKDPIKY 319
+ + LK S+ ++ Y QF LS + +D ++
Sbjct: 91 FCSFYNILKTCRGHTLERSVFSERTEESSAVQYFQF-----YGYLSQ--QQNMMQDYVRT 143
Query: 320 IRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN 379
YQ A+ Q D D +V + VG G G L S AA+ RK+ YAVE +
Sbjct: 144 GTYQRAILQNHTDF-----KDKIV---LDVGCGSGIL---SFFAAQAGARKI--YAVEAS 190
Query: 380 MSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAA 439
A K + ++ + + PE+ DI++SE +G NE E A
Sbjct: 191 TMAQHAEVLVKSNNLTD-RIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERMLESYLHA 249
Query: 440 QKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIKEHQHPLY--------------RF 485
+KYLK G P ++AP +L+ + + +Q + F
Sbjct: 250 KKYLKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSFHGVDLSALRGAAVDEYF 309
Query: 486 EQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTF 545
QP V + + +T + + F ++HG+A +FD
Sbjct: 310 RQPVVDTFDIRI-LMAKSVKYTVNFLEAKEGDLHRIEIPFKFHMLHSGLVHGLAFWFDVA 368
Query: 546 LYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCD-----NVKVWY 600
I + L W+ V P+ K D + + + ++ +
Sbjct: 369 FIGSIMTVWLSTAPTEPLTHWYQVRCLFQSPLFAKAGDTLSGTCLLIANKRQSYDISIVA 428
Query: 601 EWLVTKPTPSPIYNLDGRSYKM 622
+ T S + +L ++
Sbjct: 429 QVDQTGSKSSNLLDLKNPFFRY 450
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 155 bits (393), Expect = 1e-42
Identities = 60/290 (20%), Positives = 105/290 (36%), Gaps = 23/290 (7%)
Query: 309 YEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEAN 368
+E KD I+ Y++ + Q D VV + VG G G L S+ AAK
Sbjct: 39 HEEMLKDKIRTESYRDFIYQNPHIF-----KDKVV---LDVGCGTGIL---SMFAAKAGA 87
Query: 369 RKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFG 427
+KV V+++ + + + +T++ + + P EK D+++SE +G F
Sbjct: 88 KKV--LGVDQSEILYQAMDIIRLNKLE-DTITLIKGKIEEVHLPVEKVDVIISEWMGYFL 144
Query: 428 DNE-LSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSM-----IKEHQHP 481
E + LYA KYL + G P T + + + K
Sbjct: 145 LFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMK 204
Query: 482 LYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGY 541
+ V K I+ P D + T + S+ IAGY
Sbjct: 205 KAVIPEAVVEVLDPKTLISEPCGIKHI-DCHTTSISDLEFSSDFTLKITRTSMCTAIAGY 263
Query: 542 FDTFLYKDINLSIHPDTLSPGLIS-WFPVLFPIHEPIQLKTNDEIEVHFW 590
FD + K+ + + T + W +F + +P +K + ++
Sbjct: 264 FDIYFEKNCHNRVVFSTGPQSTKTHWKQTVFLLEKPFSVKAGEALKGKVT 313
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 146 bits (369), Expect = 4e-39
Identities = 57/289 (19%), Positives = 102/289 (35%), Gaps = 22/289 (7%)
Query: 309 YEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEAN 368
+E KD ++ + Y+ ++ D VV + VG+G G L + AAK
Sbjct: 41 HEELLKDEVRTLTYRNSMFHNRHLF-----KDKVV---LDVGSGTGIL---CMFAAKAGA 89
Query: 369 RKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFG 427
RKV +E + + +K K + VTI+ + P EK DI++SE +G
Sbjct: 90 RKV--IGIECSSISDYAVKIVKANKL-DHVVTIIKGKVEEVELPVEKVDIIISEWMGYCL 146
Query: 428 DNELS-PECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSM-----IKEHQHP 481
E L+A K+L DG+ P T Y+ I +
Sbjct: 147 FYESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIK 206
Query: 482 LYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGY 541
++P V K + K D + + +++ +H + Y
Sbjct: 207 DVAIKEPLVDVVDPKQLVTNACLIKEVDI-YTVKVEDLTFTSPFCLQVKRNDYVHALVAY 265
Query: 542 FDTFLYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFW 590
F+ + + + W +F + + + +KT +EI
Sbjct: 266 FNIEFTRCHKRTGFSTSPESPYTHWKQTVFYMEDYLTVKTGEEIFGTIG 314
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 143 bits (360), Expect = 1e-37
Identities = 61/373 (16%), Positives = 118/373 (31%), Gaps = 61/373 (16%)
Query: 296 PLQPLANDLSSF-TYEVFE------KDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMV 348
P+ + F TY D ++ Y AV Q + T++
Sbjct: 18 PVDKEVDYAQYFCTYSFLYHQKDMLSDRVRMDAYFNAVFQN--------KHHFEGKTVLD 69
Query: 349 VGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRT 408
VG G G L S A +VYAVE A K V ++ +
Sbjct: 70 VGTGSGILAIWSAQAGAR-----KVYAVEATKMADHARALVKANNL-DHIVEVIEGSVED 123
Query: 409 WNAPEKADIMVSELLGSFGDNE-LSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKL- 466
+ PEK D+++SE +G F E + + A ++LK G+ P + ++API S+
Sbjct: 124 ISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNIAD 183
Query: 467 ----------------------FTQVKSSMIKE---HQHPLYRFEQPYVVYQRNKYNIAP 501
+ V ++ + + Y + + I
Sbjct: 184 RKRNDFDGAMADWHNFSDEIKSYYGVDMGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGT 243
Query: 502 PQPCFTFVHPSEDK-DPDNSRYTKATFIAEQDSVLHGIAGYFDTFLYKDINLSIHPDTL- 559
P + + + R + I + + L G G+FD +
Sbjct: 244 PTIVKEMDCLTASVSEIEEVRSNVTSVINMEHTRLCGFGGWFDVQFSGRKEDPAQQEIEL 303
Query: 560 -----SPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCD-----NVKVWYEWLVTKPTP 609
W +F + PI ++ D + + +++ + + +
Sbjct: 304 TTAPSEQHCTHWGQQVFIMSNPINVEEGDNLNLGLLMSRSKENHRLMEIELNCEIKEASG 363
Query: 610 SPIYNLDGRSYKM 622
+P + ++Y +
Sbjct: 364 NPKESF-KKTYFI 375
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 116 bits (291), Expect = 9e-29
Identities = 59/333 (17%), Positives = 116/333 (34%), Gaps = 37/333 (11%)
Query: 309 YEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEAN 368
+E +D ++ + Y+ A+ Q + ++ VG G G L S+ AAK
Sbjct: 13 HEEMLQDTVRTLSYRNAIIQN--------KDLFKDKIVLDVGCGTGIL---SMFAAKHGA 61
Query: 369 RKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAP-EKADIMVSELLGSFG 427
+ V V+ + + + + + +T++ + + P K DI++SE +G F
Sbjct: 62 KHV--IGVDMSSIIEMAKELVELNGF-SDKITLLRGKLEDVHLPFPKVDIIISEWMGYFL 118
Query: 428 DNE-LSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSM-----IKEHQHP 481
E + LYA YL E G+ P + ++A + + + +
Sbjct: 119 LYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFV 178
Query: 482 LYRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGY 541
+P V F + K D + + A++ +++GI +
Sbjct: 179 PLVLHEPIVDTVERNNVNTTSDKLIEFDL-NTVKISDLAFKSNFKLTAKRQDMINGIVTW 237
Query: 542 FDTFL-----YKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHF------- 589
FD + + S P W +F + + +T D IE
Sbjct: 238 FDIVFPAPKGKRPVEFSTGP---HAPYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEK 294
Query: 590 WRLCDNVKVWYEWLVTKPTPSPIYNLDGRSYKM 622
N+K+ Y++ + + SY M
Sbjct: 295 NNRDLNIKISYKFESNGIDGNSRSRKNEGSYLM 327
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 4e-11
Identities = 78/572 (13%), Positives = 182/572 (31%), Gaps = 163/572 (28%)
Query: 85 LKDFESKYVERRDHAKDLL-HQELEYITYLGIPFIVVSLDQPDFCNFARTLY---AHSEK 140
+ +F+ K V+ D K +L +E+++I + D + L+ ++
Sbjct: 30 VDNFDCKDVQ--DMPKSILSKEEIDHI-----------IMSKDAVSGTLRLFWTLLSKQE 76
Query: 141 NMSYTA----------WIKVPIR--PVDTSMLRQQEEEPSSQDTWRWWNMFRSVTNYH-S 187
M ++ PI+ SM+ + E R +N + Y+ S
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD----RLYNDNQVFAKYNVS 132
Query: 188 KFELALEINGDICDDHELTRWLGE--PLRCVFIPTH-VFQTNKAGYPVLNASLANFIKKI 244
+ + +L + L E P + V I V + K + + K
Sbjct: 133 RLQPY----------LKLRQALLELRPAKNVLI--DGVLGSGKT---WVALDVCLSYKVQ 177
Query: 245 LEKNLQVVIQGVNRHQSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFPLQPLANDL 304
+ + ++ ++ K+ +S + + Q + ++
Sbjct: 178 CKMDFKI------------FWLNL-----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 305 SSFTYEVFE-KDPIKYIRYQEAVQQAL--LDRV-SPEQAD-------TVVTTIMVVGAGR 353
S+ + + ++ + + + L L V + + + ++TT R
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-------R 273
Query: 354 GPLVTASLNAAKEANRKVRVYAVEKNM---------SAVVGLKYKKE-EQWAQSD---VT 400
VT L+AA + + + + + + + ++ ++
Sbjct: 274 FKQVTDFLSAATT--THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331
Query: 401 IVSEDMR----TWNAPEKADIM-VSELLGSFGDNELSPECLYAAQKYLKE-----DGISI 450
I++E +R TW+ + + ++ ++ S + L P +K I
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEY---RKMFDRLSVFPPSAHI 387
Query: 451 P--------YNYTSYIAPIMSHKLFTQVKSSMIKEHQ-------HPLY-----RFEQPYV 490
P ++ ++ +KL K S++++ +Y + E Y
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKL---HKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 491 VYQR--NKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFI---------AEQDSVLHGIA 539
+++ + YNI + P D+ Y + I E+ ++ +
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQ------YF-YSHIGHHLKNIEHPERMTLFRMV- 496
Query: 540 GYFD-TFLYKDINLSIHPDTLSPGLISWFPVL 570
+ D FL + I H T S L
Sbjct: 497 -FLDFRFLEQKI---RHDSTAWNASGSILNTL 524
Score = 57.6 bits (138), Expect = 1e-08
Identities = 91/612 (14%), Positives = 178/612 (29%), Gaps = 178/612 (29%)
Query: 2 SQAKIAVSVGLE--YP---TCYNIQSQIESLAAECFDYAVLPL--VHPRFARHKDVDRYR 54
+ V L Y + + + S+ + L + FA++ +V R +
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY-NVSRLQ 135
Query: 55 VF-----GLPEAQVQSLSSIC------PQWLKLIVC---DIQCKLKDFESKYVE-RRDHA 99
+ L E + I W+ L VC +QCK+ DF+ ++ + ++
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM-DFKIFWLNLKNCNS 194
Query: 100 KDLLHQELEYITYLGIPFIVVSLDQPDFCNFARTLYAHSEKNMSYTAWIKVPIRPVDTSM 159
+ + + L+ + Y +D P++ + + HS I+ +R
Sbjct: 195 PETVLEMLQKLLYQ--------ID-PNWTSRSD----HSSNIKLRIHSIQAELR-----R 236
Query: 160 LRQQEEEPSS----QDTWRW--WNMF------------RSVTNYHS---KFELALEINGD 198
L + + + + WN F + VT++ S ++L+ +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 199 ICDDHE----LTRWLGEPLRCVFIPTHVFQTNKAGYPVLNASLANFIKKILEKNLQVVIQ 254
E L ++L + +P V TN P + +A I+
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQD--LPREVLTTN----PRRLSIIAESIR-----------D 339
Query: 255 GVNRHQSYLHYVQYMQYLKKSSHSDDPLSMAAQDFEDYLQFP-LQPLANDLSSFTYEVFE 313
G+ ++ H + D L+ + + L+ + + + LS VF
Sbjct: 340 GLATWDNWKHV------------NCDKLTTIIESSLNVLEPAEYRKMFDRLS-----VFP 382
Query: 314 KD-PIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVR 372
I + + V VV L SL + +
Sbjct: 383 PSAHIP-----TILLSLIWFDVIKSDVMVVVNK----------LHKYSLVEKQPKESTIS 427
Query: 373 VYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELS 432
+ ++ L+ K + + N +V
Sbjct: 428 IPSIY--------LELKVKLE----------------NEYALHRSIVDH----------- 452
Query: 433 PECLYAAQKYLKEDGISIPY--NYT-SYIAPIMSHKLFTQVKSSMIKEHQHPLYRFEQPY 489
Y K D + PY Y S+I H L EH + F +
Sbjct: 453 ----YNIPKTFDSDDLIPPYLDQYFYSHIG----HHLKN-------IEHPERMTLFRMVF 497
Query: 490 VVYQ--RNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTFLY 547
+ ++ K I + + Y +I + D + FL
Sbjct: 498 LDFRFLEQK--IRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNAILDFLP 553
Query: 548 K-DINLSIHPDT 558
K + NL T
Sbjct: 554 KIEENLICSKYT 565
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 2e-09
Identities = 93/563 (16%), Positives = 183/563 (32%), Gaps = 193/563 (34%)
Query: 1 MSQAKIAVSVGLEYPT-CYNIQSQIESLAAECFDYAVLPLVHPRFARHKD-------VDR 52
+S + L PT + I SQ++ E F +LP FA + V +
Sbjct: 11 LSHGSLEHV--LLVPTASFFIASQLQ----EQF-NKILPEPTEGFAADDEPTTPAELVGK 63
Query: 53 YRVFGLPEAQVQSLSSICPQWLKLIVCDIQCKLKDFESKYVERRD-HAKDLLHQELEYIT 111
+ + + + Q L L L +FE+ Y+E D HA
Sbjct: 64 FLGYVSSLVEPSKVGQFD-QVLNLC-------LTEFENCYLEGNDIHA------------ 103
Query: 112 YLGIPFIVVSLDQPDFCNFARTLYAHSEKNMSYTAWIKVPIRPVDTSMLRQQEEEPSSQD 171
+ L Q + TL E +Y + RP D ++ S+
Sbjct: 104 ------LAAKLLQEN----DTTLVKTKELIKNYITARIMAKRPFD-------KKSNSA-- 144
Query: 172 TWRWWNMFRSVTNYHSKFELALEING--DICDDHELTRWLGEPLRCVFIPTHVFQTNKAG 229
+FR+V +L G + D + E LR ++QT
Sbjct: 145 ------LFRAVGE--GNAQLVAIFGGQGNTDD------YFEE-LR------DLYQT---- 179
Query: 230 YPVLNASLANFIKKILEKNLQVVIQGVNRHQSYLHYVQYMQYLKKSSHSDDPLSMAAQDF 289
Y VL + + IK E +++ ++ + + + +++L+ S++ D
Sbjct: 180 YHVL---VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPD--------- 227
Query: 290 EDYLQ-----FPL----QPLANDLSSFTYEVFEK----DP---IKYIR----YQEAVQQA 329
+DYL PL Q LA+ Y V K P Y++ + + + A
Sbjct: 228 KDYLLSIPISCPLIGVIQ-LAH------YVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 330 LLDRVSP------EQADTVVTTIMVVGAGRG----PLVTASLNAAKEANRKVRVYAVEKN 379
+ + +T + +G R P + + ++ ++E N
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGV-RCYEAYPNTSLPPSILED--------SLENN 331
Query: 380 ------MSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNA--PEKADIMVSELLGSFGDNEL 431
M ++ L ++ V + + N+ P + +S L+ + +
Sbjct: 332 EGVPSPMLSISNLTQEQ-----------VQDYVNKTNSHLPAGKQVEIS-LVNGAKNLVV 379
Query: 432 S--PECLYAAQKYLKE----DG---------------------ISIPYNYTSYIAPIMSH 464
S P+ LY L++ G ++ P++ + + P S
Sbjct: 380 SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH-SHLLVPA-SD 437
Query: 465 KLFTQVKSSMIKEHQH----PLY 483
+ + + + + P+Y
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVY 460
Score = 33.1 bits (75), Expect = 0.32
Identities = 44/274 (16%), Positives = 68/274 (24%), Gaps = 127/274 (46%)
Query: 408 TWNAPEKADIMVSELLGSF------------GDNEL-SPECLYAAQKYLKEDGISIPYNY 454
P + + S+L F D+E +P L K+L Y
Sbjct: 19 VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG--KFL---------GY 67
Query: 455 TSYIAPIMSHKLFTQVKSSMIKEHQHPLYRFEQPYVVYQRNKYNIAPPQPCFTFVH---- 510
S + F QV + + E FE Y+ + N +I H
Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTE-------FENCYL--EGN--DI----------HALAA 106
Query: 511 ---PSEDKDPDNSR-----YTKATFIAEQ------DSVL-----HGIAG----------- 540
D ++ Y A +A++ +S L G A
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 541 --YFDTF--LYKD----------------INLSIHPDTLSP----GL--ISWF------- 567
YF+ LY+ L GL + W
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 568 --------PVLFPIHEPIQLKTNDEIEVHFWRLC 593
P+ P+ IQL H+
Sbjct: 227 DKDYLLSIPISCPLIGVIQL-------AHYVVTA 253
Score = 29.2 bits (65), Expect = 5.2
Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 21/75 (28%)
Query: 226 NKAGYPVLNASLANFIKKILEKNL---QVVIQG----VNRHQSYLHYVQYMQYLKKSSHS 278
+ G+ V + N+ N+ Q V G ++ + L++++ L+K
Sbjct: 1835 KRTGWLV---EIVNY-------NVENQQYVAAGDLRALDTVTNVLNFIK----LQKIDII 1880
Query: 279 DDPLSMAAQDFEDYL 293
+ S++ ++ E +L
Sbjct: 1881 ELQKSLSLEEVEGHL 1895
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 35.2 bits (80), Expect = 0.060
Identities = 18/86 (20%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 296 PLQPLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGP 355
L++ + + F+ PI+ + V +A+ R + V+ +++VGAG
Sbjct: 22 VTHCLSDIVKKEDWSDFKFAPIR----ESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSG 77
Query: 356 LVTASLNAAKEANRKVRVYAVEKNMS 381
L A + A + KV + +E +++
Sbjct: 78 LSAAYVIAKNRPDLKVCI--IESSVA 101
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 34.4 bits (78), Expect = 0.11
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 299 PLANDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVT 358
PL + + + F PI+ + V +A+ R + T I++VGAG L
Sbjct: 39 PLLELMPTLGTDAFTFSPIR----ESTVSRAMTRRYFADLDAHAETDIVIVGAGSCGLSA 94
Query: 359 ASLNAAKEANRKVRVYAVEKNMS 381
A + + + ++ + VE ++
Sbjct: 95 AYVLSTLRPDLRITI--VEAGVA 115
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 33.8 bits (77), Expect = 0.12
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE 404
++ + AG G L SL A K +V A+EK+ L + ++ +
Sbjct: 128 LVVDMFAGIGHL---SLPIAV--YGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 182
Query: 405 DMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGI 448
D R + AD ++ + + E + A K+ I
Sbjct: 183 DNRDFPGENIADRILMGYVVR------THEFIPKALSIAKDGAI 220
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 33.2 bits (75), Expect = 0.20
Identities = 17/138 (12%), Positives = 44/138 (31%), Gaps = 11/138 (7%)
Query: 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVS 403
I+ +G G + + + R+Y VE + L ++ ++ +
Sbjct: 79 DRILYLGIASGTTASH---MSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPIL 132
Query: 404 EDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDG---ISIPYNYTSYIAP 460
D R V L E + + A+ +L++ G ++I
Sbjct: 133 GDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTE 192
Query: 461 IMSHKLFTQVKSSMIKEH 478
+++ + +++
Sbjct: 193 P--SEVYKREIKTLMDGG 208
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 31.3 bits (72), Expect = 0.95
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 337 EQADTVVTTI--MVVGAGRGPLVTASLNAAKEANRKVRVYAVE 377
QA + ++ G G L+ A K + V VE
Sbjct: 161 AQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVE 203
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 30.8 bits (69), Expect = 1.0
Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 12/138 (8%)
Query: 344 TTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVS 403
+ I+ +GA G + + A + VYA+E + L E+ ++ +
Sbjct: 76 SKILYLGASAGTTPSHVADIADKG----IVYAIEYAPRIMRELLDACAER---ENIIPIL 128
Query: 404 EDMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDG---ISIPYNYTSYIAP 460
D V + + + A+ +LK+ G I+I
Sbjct: 129 GDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD 188
Query: 461 IMSHKLFTQVKSSMIKEH 478
++F + K +
Sbjct: 189 P--KEIFKEQKEILEAGG 204
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Length = 597
Score = 31.0 bits (69), Expect = 1.2
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 550 INLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCDNVKVWYE 601
+ P +S FP L PI + + K + ++F R ++++
Sbjct: 546 AAYHLGPHVISKASTEEFPPLQPILQQKKEKDIMKKTINFARTGGLENLYFQ 597
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 30.5 bits (69), Expect = 1.4
Identities = 24/150 (16%), Positives = 54/150 (36%), Gaps = 19/150 (12%)
Query: 302 NDLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASL 361
N + ++ D + Y ++ + + + + + V + + G G L T +L
Sbjct: 4 NKFAHIYDKLIRAD-VDYKKWSDFIIEKC------VENNLVFDDYLDLACGTGNL-TENL 55
Query: 362 NAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSE 421
+ +AV+ + + + K + +D+ N K D++
Sbjct: 56 -----CPKFKNTWAVDLSQEMLSEAENKFRS--QGLKPRLACQDISNLNINRKFDLITC- 107
Query: 422 LLGSFG---DNELSPECLYAAQKYLKEDGI 448
L S D++ + A +LKE G+
Sbjct: 108 CLDSTNYIIDSDDLKKYFKAVSNHLKEGGV 137
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 30.2 bits (69), Expect = 1.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383
V G G G +T + +EA +++YAVE S V
Sbjct: 172 AFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPV 209
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 30.2 bits (69), Expect = 1.9
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383
V G+G G +T KE V+V AVE S V
Sbjct: 169 AFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNV 206
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 30.2 bits (69), Expect = 2.1
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383
I+V G V KE + +++ AVE SAV
Sbjct: 186 IVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAV 223
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 29.8 bits (68), Expect = 2.6
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383
I+V G G G +T KE R AVE S V
Sbjct: 175 IVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPV 212
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 29.8 bits (68), Expect = 2.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383
V G G G +T + KE N V++Y VE SA+
Sbjct: 175 GFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAI 212
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.15A {Planctomyces limnophilus}
Length = 290
Score = 29.8 bits (67), Expect = 2.8
Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 8/117 (6%)
Query: 5 KIAVSVGLEYPTCYNIQSQIESLAAEC-FDYAVLPLVHPRFARHKDVDRYRVFGLPEAQV 63
I V ++ + +E +A + + HP + +R A +
Sbjct: 12 PIGVFTSVDAG----LGVHLE-VAQDLKVPTVQVHAPHPHTRTREHAQAFRAK-CDAAGI 65
Query: 64 QSLSSICPQWLKLIVCDIQCKLKDFESKYVERRDHAKDLLHQELEYITYLGIPFIVV 120
Q ++ I + DI + +E R + + ++ +++G P I +
Sbjct: 66 Q-VTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGL 121
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 29.6 bits (67), Expect = 3.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383
I V G G G +T KE N K +V VE S +
Sbjct: 283 IFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDI 320
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 29.4 bits (67), Expect = 3.2
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAV 383
+ G G G +T A K+ R+ AVE S V
Sbjct: 180 CFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPV 217
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 29.4 bits (67), Expect = 3.6
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 337 EQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVE 377
T +++ G G L + + V + A+E
Sbjct: 150 AVLRTPPGALVLAVGGGGLLAGVVAGLLEVGWQHVPIIAME 190
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.9 bits (64), Expect = 3.7
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 4/34 (11%)
Query: 148 IKVPIRPVDTSMLRQQEEEPSSQD----TWRWWN 177
I++P + S + D +W+
Sbjct: 176 IELPPNEILFSENNDMDNNNDGVDELNKKCTFWD 209
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 29.0 bits (64), Expect = 4.8
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 5/77 (6%)
Query: 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKN---MSAVVGLKYKKEEQWAQSDVTIV 402
I+V+GAG LV AS + + EKN G+ ++
Sbjct: 3 ILVIGAGPAGLVFASQLKQARPLWAIDIV--EKNDEQEVLGWGVVLPGRPGQHPANPLSY 60
Query: 403 SEDMRTWNAPEKADIMV 419
+ N D +
Sbjct: 61 LDAPERLNPQFLEDFKL 77
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 29.1 bits (66), Expect = 4.9
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 337 EQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRVYAVE 377
Q V +VV G G ++ K V+VYA E
Sbjct: 172 NQVPLV--DALVVPVGGGGMLAGIAITVKALKPSVKVYAAE 210
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 29.0 bits (65), Expect = 5.0
Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 15/104 (14%)
Query: 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSE 404
++ + AG GP S+ ++YA++ N A+ LK + + + +
Sbjct: 198 VVVDMFAGVGPF---SIACKN----AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILS 250
Query: 405 DMRTWNAPEKADIMVSELLGSFGDNELSPECLYAAQKYLKEDGI 448
D+R K + ++ L + + + + A ++E G+
Sbjct: 251 DVR--EVDVKGNRVIMNLP------KFAHKFIDKALDIVEEGGV 286
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 29.0 bits (66), Expect = 5.0
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 346 IMVVGAGRGPLVTASLNAAKEANRKVRVYAVE 377
+ V G G L++ S AA+ VY VE
Sbjct: 177 ALFVCLGGGGLLSGSALAARHFAPNCEVYGVE 208
>1ro2_A Hypothetical protein ORF904; DNA polymerase, primase, replication,
polymerization, evolution of nucleic acid polymerizing
enzymes; 1.60A {Sulfolobus islandicus} SCOP: d.264.1.2
PDB: 1ro0_A 1rni_A
Length = 216
Score = 28.5 bits (63), Expect = 6.1
Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 153 RPVDTSMLRQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEING----DICDDHELTRW 208
+PV + E PS ++ R+ M NY + G D +L W
Sbjct: 27 KPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNY----AIPGGQKGMVIMDFESKEKLKAW 82
Query: 209 LGEP-LRCVFIPTHVFQTNKAGY 230
+GE L + T T G
Sbjct: 83 IGESALEELCRKTLCTNTVHGGI 105
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic
translation initiation factor 2balpha (EIF2balpha);
2.65A {Homo sapiens}
Length = 315
Score = 28.5 bits (64), Expect = 6.7
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 345 TIMVVGAGRGPLVTASLNAAKEANRKVRVYAVE 377
TI+ R +V L AA A ++ VY E
Sbjct: 124 TILTHAYSR--VVLRVLEAAVAAKKRFSVYVTE 154
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.12A {Shewanella oneidensis}
Length = 331
Score = 28.4 bits (63), Expect = 8.2
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 15/90 (16%)
Query: 225 TNKAGYPVL---------------NASLANFIKKILEKNLQVVIQGVNRHQSYLHYVQYM 269
+ YPV+ L+ + K + V I NR + Y +
Sbjct: 38 QSLEAYPVVYLLDGEDQFDHMASLLQFLSQGTMPQIPKVIIVGIHNTNRMRDYTPTHTLV 97
Query: 270 QYLKKSSHSDDPLSMAAQDFEDYLQFPLQP 299
+ + A F D+++ L P
Sbjct: 98 LPSGNKGNPQYQHTGGAGRFLDFIEKELAP 127
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 28.3 bits (64), Expect = 8.4
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 348 VVGAGRGPLVTASLNAAKEANRKVRVYAVE 377
+V G G L+ A K N ++V V+
Sbjct: 193 IVPIGGGGLIAGIAIAIKSINPTIKVIGVQ 222
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,726,576
Number of extensions: 581737
Number of successful extensions: 1372
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1325
Number of HSP's successfully gapped: 44
Length of query: 626
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 527
Effective length of database: 3,937,614
Effective search space: 2075122578
Effective search space used: 2075122578
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)