RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17734
(626 letters)
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 111 bits (277), Expect = 2e-27
Identities = 54/287 (18%), Positives = 98/287 (34%), Gaps = 27/287 (9%)
Query: 314 KDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEANRKVRV 373
KD I+ Y++ + Q ++ VG G G L S+ AAK +KV
Sbjct: 15 KDKIRTESYRDFIYQNP--------HIFKDKVVLDVGCGTGIL---SMFAAKAGAKKV-- 61
Query: 374 YAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGDNELSP 433
V+++ + + + + I + EK D+++SE +G F E
Sbjct: 62 LGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESML 121
Query: 434 EC-LYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSMIKEHQHPL-----YRFEQ 487
+ LYA KYL + G P T + + + + + +
Sbjct: 122 DSVLYAKNKYLAKGGSVYPDICTISLVAVSDVNKHADRIAFWDDVYGFKMSCMKKAVIPE 181
Query: 488 PYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYFDTF-- 545
V K I+ P + D + T + S+ IAGYFD +
Sbjct: 182 AVVEVLDPKTLISEPCGIKHIDCHTTSIS-DLEFSSDFTLKITRTSMCTAIAGYFDIYFE 240
Query: 546 --LYKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFW 590
+ + S P + W +F + +P +K + ++
Sbjct: 241 KNCHNRVVFSTGPQSTKT---HWKQTVFLLEKPFSVKAGEALKGKVT 284
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 328
Score = 108 bits (270), Expect = 2e-26
Identities = 50/319 (15%), Positives = 103/319 (32%), Gaps = 33/319 (10%)
Query: 309 YEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEAN 368
+E +D ++ + Y+ A+ Q ++ VG G G L S+ AAK
Sbjct: 13 HEEMLQDTVRTLSYRNAIIQNK--------DLFKDKIVLDVGCGTGIL---SMFAAKHGA 61
Query: 369 RKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMRTWNAPEKADIMVSELLGSFGD 428
+ V V+ + + + + ++ + + K DI++SE +G F
Sbjct: 62 KHV--IGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYFLL 119
Query: 429 NELSPE-CLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVKSSM-----IKEHQHPL 482
E + LYA YL E G+ P + ++A + + + +
Sbjct: 120 YESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFDYSPFVP 179
Query: 483 YRFEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYF 542
+P V F + D + + A++ +++GI +F
Sbjct: 180 LVLHEPIVDTVERNNVNTTSDKLIEFDLNTVKIS-DLAFKSNFKLTAKRQDMINGIVTWF 238
Query: 543 DTFL-----YKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFWRLCD--- 594
D + + S P W +F + + +T D IE +
Sbjct: 239 DIVFPAPKGKRPVEFSTGPHA---PYTHWKQTIFYFPDDLDAETGDTIEGELVCSPNEKN 295
Query: 595 --NVKVWYEWLVTKPTPSP 611
++ + +
Sbjct: 296 NRDLNIKISYKFESNGIDG 314
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 316
Score = 105 bits (263), Expect = 1e-25
Identities = 47/291 (16%), Positives = 96/291 (32%), Gaps = 26/291 (8%)
Query: 309 YEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLNAAKEAN 368
+E KD ++ + Y+ ++ ++ VG+G G L + AAK
Sbjct: 8 HEEMLKDEVRTLTYRNSMFHNRHLFKD--------KVVLDVGSGTGIL---CMFAAKAGA 56
Query: 369 RKVRVYAVEKNMSAVVGLKYKKEEQWAQSDVTIVSEDMR-TWNAPEKADIMVSELLGSFG 427
RKV +E + + +K K + I + + I+ +
Sbjct: 57 RKV--IGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLF 114
Query: 428 DNELSPECLYAAQKYLKEDGISIPYNYTSYIAPIMSHKLFTQVK---SSMIKEHQHPLYR 484
+ L+A K+L DG+ P T Y+ I + ++ +
Sbjct: 115 YESMLNTVLHARDKWLAPDGLIFPDRATLYVTAIEDRQYKDYKIHWWENVYGFDMSCIKD 174
Query: 485 --FEQPYVVYQRNKYNIAPPQPCFTFVHPSEDKDPDNSRYTKATFIAEQDSVLHGIAGYF 542
++P V K + K D + + +++ +H + YF
Sbjct: 175 VAIKEPLVDVVDPKQLVTNACLIKEV-DIYTVKVEDLTFTSPFCLQVKRNDYVHALVAYF 233
Query: 543 DTFL---YKDINLSIHPDTLSPGLISWFPVLFPIHEPIQLKTNDEIEVHFW 590
+ +K S P++ W +F + + + +KT +EI
Sbjct: 234 NIEFTRCHKRTGFSTSPESPYT---HWKQTVFYMEDYLTVKTGEEIFGTIG 281
>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale
cress(Arabidopsis thaliana) [TaxId: 3702]}
Length = 278
Score = 31.0 bits (69), Expect = 0.42
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 303 DLSSFTYEVFEKDPIKYIRYQEAVQQALLDRVSPEQADTVVTTIMVVGAGRGPLVTASLN 362
DL++FT++ PIK + V + + R + T ++VVGAG L A
Sbjct: 2 DLNAFTFD-----PIK----ESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAA-YE 51
Query: 363 AAKEANRKVRVY 374
+K N +V +
Sbjct: 52 ISKNPNVQVAII 63
>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 25.5 bits (56), Expect = 5.9
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 66 LSSICPQWLKLIVCDIQCKLKDFESKYVER---RDHAKDLLHQEL 107
LS++ + L+V + F ++ ++ + K L+ L
Sbjct: 36 LSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGKALIQTCL 80
>d1wzaa2 c.1.8.1 (A:28-436) Bacterial alpha-amylase {Halothermothrix
orenii [TaxId: 31909]}
Length = 409
Score = 26.9 bits (58), Expect = 7.9
Identities = 27/199 (13%), Positives = 53/199 (26%), Gaps = 9/199 (4%)
Query: 40 VHPRFARHKD----VDRYRVFGL---PEAQVQSLSSICPQWLKLIVCDIQCKLKDFESKY 92
++P + +D V+ G+ + + S P +LK +
Sbjct: 74 INPDYGTLEDFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAG 133
Query: 93 VERRDHAKDLLHQELEYITYLGIPFIVVSLDQPDFCNFARTLYAHSEKNMSYTAWIKVPI 152
+ L + + + G+ + PD + Y W+K +
Sbjct: 134 PDTDTKETKLDGGRVWHYSPTGMYYGYFWSGMPDLNYNNPEVQEKVIGIAKY--WLKQGV 191
Query: 153 RPVDTSMLRQQEEEPSSQDTWRWWNMFRSVTNYHSKFELALEINGDICDDHELTRWLGEP 212
+ WW FR L E+ ++ +
Sbjct: 192 DGFRLDGAMHIFPPAQYDKNFTWWEKFRQEIEEVKPVYLVGEVWDISETVAPYFKYGFDS 251
Query: 213 LRCVFIPTHVFQTNKAGYP 231
+ V T KAG+P
Sbjct: 252 TFNFKLAEAVIATAKAGFP 270
>d1q2la3 d.185.1.1 (A:264-503) Protease III {Escherichia coli
[TaxId: 562]}
Length = 240
Score = 26.9 bits (59), Expect = 7.9
Identities = 14/96 (14%), Positives = 25/96 (26%), Gaps = 8/96 (8%)
Query: 257 NRHQSYLHYVQYMQYLKKSSHSDDPL----SMAAQDFEDYLQFPLQPLANDLSSFTYEVF 312
NR Q Y+ L++ ++ DF L+ V
Sbjct: 101 NRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVP 160
Query: 313 EKD----PIKYIRYQEAVQQALLDRVSPEQADTVVT 344
+ RY + L ++P+ A
Sbjct: 161 VEHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYI 196
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,415,066
Number of extensions: 115347
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 10
Length of query: 626
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 535
Effective length of database: 1,158,166
Effective search space: 619618810
Effective search space used: 619618810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.0 bits)