BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17735
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VKJ9|C2D1_DROME Coiled-coil and C2 domain-containing protein 1-like OS=Drosophila
melanogaster GN=l(2)gd1 PE=2 SV=1
Length = 816
Score = 125 bits (315), Expect = 5e-29, Method: Composition-based stats.
Identities = 54/69 (78%), Positives = 63/69 (91%)
Query: 26 GFFRSDTLVGTVNVKLQPLETKCTIHDAYDLMDGRKTLGGKLEVKIRIRNPIVSKQLEQV 85
GF RSDTL+GTVNVKLQPLETKC IHD YDLMDGRK +GGKLEVKIR+RNPI++KQ+E +
Sbjct: 748 GFLRSDTLIGTVNVKLQPLETKCEIHDTYDLMDGRKQVGGKLEVKIRVRNPILTKQMEHI 807
Query: 86 KEKWLVIDS 94
EKWLV+D+
Sbjct: 808 TEKWLVLDA 816
>sp|Q29M42|C2D1_DROPS Coiled-coil and C2 domain-containing protein 1-like OS=Drosophila
pseudoobscura pseudoobscura GN=GA18377 PE=3 SV=2
Length = 814
Score = 123 bits (308), Expect = 4e-28, Method: Composition-based stats.
Identities = 53/76 (69%), Positives = 64/76 (84%)
Query: 19 LSFSTSRGFFRSDTLVGTVNVKLQPLETKCTIHDAYDLMDGRKTLGGKLEVKIRIRNPIV 78
L + GF RSD L+GTVNVKLQPLETKC IHD YDLMDGRK +GGKLEVK+R+RNPI+
Sbjct: 737 LEIYSRGGFLRSDILIGTVNVKLQPLETKCDIHDTYDLMDGRKQVGGKLEVKVRVRNPIL 796
Query: 79 SKQLEQVKEKWLVIDS 94
+KQ+E + EKWLV+D+
Sbjct: 797 TKQIEHINEKWLVLDA 812
>sp|Q66HA5|C2D1A_RAT Coiled-coil and C2 domain-containing protein 1A OS=Rattus
norvegicus GN=Cc2d1a PE=2 SV=2
Length = 941
Score = 84.0 bits (206), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 51/70 (72%)
Query: 26 GFFRSDTLVGTVNVKLQPLETKCTIHDAYDLMDGRKTLGGKLEVKIRIRNPIVSKQLEQV 85
G F++D ++GT +KL LET C +H+ +++DGR+ GG+LEV +RIR P+ ++QLE
Sbjct: 734 GLFKTDRVLGTAQLKLDTLETACEVHEILEVLDGRRPTGGRLEVMVRIREPLTAQQLETT 793
Query: 86 KEKWLVIDSV 95
E+WLVID +
Sbjct: 794 TERWLVIDHI 803
>sp|Q8K1A6|C2D1A_MOUSE Coiled-coil and C2 domain-containing protein 1A OS=Mus musculus
GN=Cc2d1a PE=1 SV=2
Length = 943
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 51/70 (72%)
Query: 26 GFFRSDTLVGTVNVKLQPLETKCTIHDAYDLMDGRKTLGGKLEVKIRIRNPIVSKQLEQV 85
G F++D ++GT +KL LET C +H+ +++DGR+ GG+LEV +RIR P+ ++QLE
Sbjct: 736 GLFKTDRVLGTAQLKLGTLETACEVHEILEVLDGRRPTGGRLEVMVRIREPLTAQQLETT 795
Query: 86 KEKWLVIDSV 95
E+WLVID +
Sbjct: 796 TERWLVIDHI 805
>sp|Q8BRN9|C2D1B_MOUSE Coiled-coil and C2 domain-containing protein 1B OS=Mus musculus
GN=Cc2d1b PE=1 SV=1
Length = 848
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 27 FFRSDTLVGTVNVKLQPLETKCTIHDAYDLMDGRKTLGGKLEVKIRIRNPIVSKQLEQVK 86
FFRSD LVGT ++KL+ LE +C I + +++DGRK GGKLEVK+R+R P+ S+ ++ V
Sbjct: 778 FFRSDKLVGTAHLKLERLEKECEIREIMEVLDGRKPTGGKLEVKVRLREPLSSQDVQTVT 837
Query: 87 EKWLVID 93
E WLV++
Sbjct: 838 ENWLVLE 844
>sp|Q5FVK6|C2D1B_RAT Coiled-coil and C2 domain-containing protein 1B OS=Rattus
norvegicus GN=Cc2d1b PE=1 SV=2
Length = 850
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 27 FFRSDTLVGTVNVKLQPLETKCTIHDAYDLMDGRKTLGGKLEVKIRIRNPIVSKQLEQVK 86
FFRSD LVGT ++KL+ LE +C I + +++DGRK GGKLEVK+R+R P+ S+ ++ V
Sbjct: 780 FFRSDKLVGTAHLKLERLEKECEIREIMEVLDGRKPTGGKLEVKVRLREPLSSQDVQMVT 839
Query: 87 EKWLVID 93
E WLV++
Sbjct: 840 ENWLVLE 846
>sp|Q5T0F9|C2D1B_HUMAN Coiled-coil and C2 domain-containing protein 1B OS=Homo sapiens
GN=CC2D1B PE=1 SV=1
Length = 858
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/67 (50%), Positives = 50/67 (74%)
Query: 27 FFRSDTLVGTVNVKLQPLETKCTIHDAYDLMDGRKTLGGKLEVKIRIRNPIVSKQLEQVK 86
FFRSD LVGT ++KL+ LE +C I + +++DGRK GGKLEVK+R+R P+ + ++ V
Sbjct: 788 FFRSDKLVGTAHLKLERLENECEIREIVEVLDGRKPTGGKLEVKVRLREPLSGQDVQMVT 847
Query: 87 EKWLVID 93
E WLV++
Sbjct: 848 ENWLVLE 854
>sp|Q6P1N0|C2D1A_HUMAN Coiled-coil and C2 domain-containing protein 1A OS=Homo sapiens
GN=CC2D1A PE=1 SV=1
Length = 951
Score = 79.7 bits (195), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/70 (45%), Positives = 49/70 (70%)
Query: 26 GFFRSDTLVGTVNVKLQPLETKCTIHDAYDLMDGRKTLGGKLEVKIRIRNPIVSKQLEQV 85
G F++D ++GT +KL LE C + + +++DGR+ GG+LEV +RIR P+ ++QLE
Sbjct: 743 GLFKTDRVLGTAQLKLDALEIACEVREILEVLDGRRPTGGRLEVMVRIREPLTAQQLETT 802
Query: 86 KEKWLVIDSV 95
E+WLVID V
Sbjct: 803 TERWLVIDPV 812
>sp|Q6PF54|C2D1B_XENLA Coiled-coil and C2 domain-containing protein 1B OS=Xenopus laevis
GN=cc2d1b PE=2 SV=1
Length = 864
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/73 (50%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 25 RGFF--RSDTLVGTVNVKLQPLETKCTIHDAYDLMDGRKTLGGKLEVKIRIRNPIVSKQL 82
+GFF RSD VG+ +VKL LET+C I + ++ DGRK GGKLE+K+R+R+P+ + L
Sbjct: 789 KGFFLVRSDKQVGSASVKLDKLETQCEIREIVEVFDGRKPTGGKLEIKVRLRDPLNGQDL 848
Query: 83 EQVKEKWLVIDSV 95
+ V EKWLV+ V
Sbjct: 849 QVVTEKWLVMGHV 861
>sp|Q9U2M8|C2D1_CAEEL Coiled-coil and C2 domain-containing protein 1-like
OS=Caenorhabditis elegans GN=Y37H9A.3 PE=1 SV=2
Length = 792
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/69 (43%), Positives = 44/69 (63%)
Query: 26 GFFRSDTLVGTVNVKLQPLETKCTIHDAYDLMDGRKTLGGKLEVKIRIRNPIVSKQLEQV 85
GF RSD L+GT KL+ LE + ++ L DGRK +GG L K+RIR PI + + +
Sbjct: 724 GFMRSDKLLGTCEWKLEKLEHSAEMEESLPLKDGRKAVGGLLSAKVRIRQPIGDAKAQHI 783
Query: 86 KEKWLVIDS 94
+KWL++D+
Sbjct: 784 AQKWLILDN 792
>sp|B8D7A5|SECA_BUCAT Protein translocase subunit SecA OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain Tuc7) GN=secA PE=3 SV=1
Length = 875
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 57 MDGRKT---LGGKLEVKIRIRNPIVSKQLEQVKEKW 89
M GR T LGG LEV++ I S+++E++K+KW
Sbjct: 506 MAGRGTDIVLGGNLEVELNKYKNITSRKIEEIKKKW 541
>sp|P57297|SECA_BUCAI Protein translocase subunit SecA OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=secA PE=3 SV=1
Length = 875
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 57 MDGRKT---LGGKLEVKIRIRNPIVSKQLEQVKEKW 89
M GR T LGG LEV++ I S+++E++K+KW
Sbjct: 506 MAGRGTDIVLGGNLEVELNKYKNITSRKIEEIKKKW 541
>sp|B8D900|SECA_BUCA5 Protein translocase subunit SecA OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain 5A) GN=secA PE=3 SV=1
Length = 875
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Query: 57 MDGRKT---LGGKLEVKIRIRNPIVSKQLEQVKEKW 89
M GR T LGG LEV++ I S+++E++K+KW
Sbjct: 506 MAGRGTDIVLGGNLEVELNKYKNITSRKIEEIKKKW 541
>sp|Q6BTX0|ATG2_DEBHA Autophagy-related protein 2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=ATG2 PE=3 SV=2
Length = 1887
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 23 TSRGFFRSDTLVGTVNVKLQPLETKCTIHDAYDLMDGRKTLGGKLEVKIRIRNPIVSKQL 82
+S G R++T V + + + +TK ++D +D RKT+ G ++ R+ + ++L
Sbjct: 1201 SSNGADRNNTEVFPIKMNINLSKTKIYLYDGFDWKGTRKTIKGAVK---RVEAQAL-QEL 1256
Query: 83 EQVKE 87
E+VKE
Sbjct: 1257 ERVKE 1261
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,091,871
Number of Sequences: 539616
Number of extensions: 1095680
Number of successful extensions: 2617
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2604
Number of HSP's gapped (non-prelim): 15
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)