RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17735
         (96 letters)



>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein
           structural and functional analyses; NMR {Homo sapiens}
           SCOP: b.7.1.1
          Length = 156

 Score = 31.1 bits (70), Expect = 0.026
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 18  SLSFSTSRGFFRSDTLVGTVNVKLQP-LETKCTIHDAYDLM--DGRKTLGGKLEVKIRIR 74
           +++    + +      +    +K    LE    I     L+   G     G +E   R+R
Sbjct: 90  TITLEVHQAYSTEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLR 149

Query: 75  NPI 77
              
Sbjct: 150 VSG 152


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 0.45
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 23/71 (32%)

Query: 29   RSDTLVGTVN--------V---KLQPLETKCTIHDAYDLMDGRKTLGGKLEVKIRIRNPI 77
            R+  LV  VN        V    L+ L+T   +     L      +  +   KI I    
Sbjct: 1836 RTGWLVEIVNYNVENQQYVAAGDLRALDTVTNV-----L----NFIKLQ---KIDIIELQ 1883

Query: 78   VSKQLEQVKEK 88
             S  LE+V+  
Sbjct: 1884 KSLSLEEVEGH 1894


>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase,
           protein translocation, protein transport; 2.00A
           {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A
           3bxz_A*
          Length = 853

 Score = 27.5 bits (62), Expect = 0.67
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 57  MDGRKT---LGGKLEVKIRIRNPIVSKQLEQVKEKW 89
           M GR T   LGG  + ++       ++Q+E++K  W
Sbjct: 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADW 533


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.0 bits (56), Expect = 2.7
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 39  VKLQPLETKCTIHDAYDLMDGRKTLGGKLEVKIRIRN 75
           V+ QP E+  +I   Y  ++ +  L  +  +   I +
Sbjct: 417 VEKQPKESTISIPSIY--LELKVKLENEYALHRSIVD 451


>3nrk_A LIC12922; NC domain, parvulin domain, SURA homology, probable
           chaperon unknown function; 3.10A {Leptospira interrogans
           serovar copenhaorganism_taxid}
          Length = 325

 Score = 25.3 bits (55), Expect = 3.9
 Identities = 5/23 (21%), Positives = 11/23 (47%)

Query: 68  EVKIRIRNPIVSKQLEQVKEKWL 90
            ++  I+N +   + E    +WL
Sbjct: 271 NLRGGIQNILYRDKEEDTFHRWL 293


>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens}
          SCOP: b.26.1.2 PDB: 2aff_A*
          Length = 128

 Score = 24.7 bits (54), Expect = 5.1
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 54 YDLMDGRKTLGGKLEVKIRIRNPIVSK---QLEQVKEKWLVID 93
          + L       G  +E  IRI+ P+VSK   ++E  +++ ++ +
Sbjct: 28 FPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIHEQEAILHN 70


>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A,
           periplasmic molecular chaperone, membrane protein
           folding, GRAM negative bacteria; 3.00A {Escherichia
           coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
          Length = 408

 Score = 24.6 bits (53), Expect = 6.3
 Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 42  QPLETKCTIHDAYDLMDGRKTLGGKLEVKIRIRNPIVSKQLEQVKEKWL 90
            P+ +    H    L+D R         K R    +++++  +    W+
Sbjct: 347 APVHSSFGWHLIE-LLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWM 394


>3rgc_A Possible periplasmic protein; ppiase, chaperone; 2.30A
           {Campylobacter jejuni}
          Length = 252

 Score = 24.4 bits (53), Expect = 6.6
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 68  EVKIRIRNPIVSKQLEQVKEKWL 90
           +VK  + N  VS+Q +   + + 
Sbjct: 216 QVKNEVLNAYVSEQRQNFIQDYF 238


>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
           center for structural genomics of infec diseases, csgid,
           niaid; HET: MSE; 2.09A {Vibrio vulnificus}
          Length = 461

 Score = 24.1 bits (53), Expect = 8.3
 Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 3/37 (8%)

Query: 52  DAYDLMDGRKTLGGKLEVKIRIRNPIVSKQLEQVKEK 88
                 + + +L   + VK     P+V   L  ++E 
Sbjct: 147 QVVSFAEEKVSL---VAVKAYYGGPLVGNALSALREH 180


>2xt9_B Putative signal transduction protein GARA; lyase-signaling
          protein complex, KDH, KGD; HET: TPP; 2.20A
          {Mycobacterium smegmatis}
          Length = 115

 Score = 23.9 bits (52), Expect = 9.7
 Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 54 YDLMDGRKTLGGKLEVKIRIRNPIVSK---QLEQVKEKWLVID 93
          + L     + G   +  I + +  VS+   +      ++ V+D
Sbjct: 26 FLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLEGGEFQVVD 68


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0777    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,384,326
Number of extensions: 66767
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 11
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)