RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17735
         (96 letters)



>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 136

 Score = 25.9 bits (56), Expect = 0.77
 Identities = 8/46 (17%), Positives = 18/46 (39%)

Query: 27  FFRSDTLVGTVNVKLQPLETKCTIHDAYDLMDGRKTLGGKLEVKIR 72
               D  VG   + L+P+  + +I      +   +   G++ V + 
Sbjct: 82  VGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127


>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 126

 Score = 25.1 bits (54), Expect = 1.3
 Identities = 5/46 (10%), Positives = 15/46 (32%), Gaps = 3/46 (6%)

Query: 28  FRSDTLVGTVNVKLQPLETKCTIHDAYDLMDGRKTLGGKLEVKIRI 73
           +  D  +GT    +  ++        +      +     LE+ + +
Sbjct: 81  YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTE---MVLEMSLEV 123


>d2r9fa1 d.3.1.3 (A:33-354) Calpain large subunit, catalytic domain
           (domain II) {Rat (Rattus norvegicus), mu-type [TaxId:
           10116]}
          Length = 322

 Score = 24.8 bits (53), Expect = 2.2
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 53  AYDLMDGRK-TLGGKLEVKIRIRNP 76
           AY + D ++ T  G+    IR+RNP
Sbjct: 241 AYSVTDAKQVTYQGQRVNLIRMRNP 265


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0493    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 335,925
Number of extensions: 12354
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 9
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.4 bits)