BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17736
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P37383|RAD51_CHICK DNA repair protein RAD51 homolog 1 OS=Gallus gallus GN=RAD51A PE=2
SV=1
Length = 339
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/44 (95%), Positives = 43/44 (97%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+YALLIVDSA ALYRTDYSGRGELSARQMHLARFLRMLLRLADE
Sbjct: 215 RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADE 258
>sp|O77507|RAD51_RABIT DNA repair protein RAD51 homolog 1 OS=Oryctolagus cuniculus
GN=RAD51 PE=2 SV=1
Length = 339
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/44 (95%), Positives = 43/44 (97%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+YALLIVDSA ALYRTDYSGRGELSARQMHLARFLRMLLRLADE
Sbjct: 215 RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADE 258
>sp|P70099|RAD51_CRIGR DNA repair protein RAD51 homolog 1 OS=Cricetulus griseus GN=RAD51
PE=2 SV=1
Length = 339
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/44 (95%), Positives = 43/44 (97%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+YALLIVDSA ALYRTDYSGRGELSARQMHLARFLRMLLRLADE
Sbjct: 215 RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADE 258
>sp|Q8MKI8|RAD51_CANFA DNA repair protein RAD51 homolog 1 OS=Canis familiaris GN=RAD51
PE=2 SV=1
Length = 339
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/44 (95%), Positives = 43/44 (97%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+YALLIVDSA ALYRTDYSGRGELSARQMHLARFLRMLLRLADE
Sbjct: 215 RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADE 258
>sp|Q2KJ94|RAD51_BOVIN DNA repair protein RAD51 homolog 1 OS=Bos taurus GN=RAD51 PE=2 SV=1
Length = 339
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/44 (95%), Positives = 43/44 (97%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+YALLIVDSA ALYRTDYSGRGELSARQMHLARFLRMLLRLADE
Sbjct: 215 RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADE 258
>sp|Q06609|RAD51_HUMAN DNA repair protein RAD51 homolog 1 OS=Homo sapiens GN=RAD51 PE=1
SV=1
Length = 339
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/44 (95%), Positives = 43/44 (97%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+YALLIVDSA ALYRTDYSGRGELSARQMHLARFLRMLLRLADE
Sbjct: 215 RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADE 258
>sp|Q08297|RAD51_MOUSE DNA repair protein RAD51 homolog 1 OS=Mus musculus GN=Rad51 PE=1
SV=1
Length = 339
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/44 (95%), Positives = 43/44 (97%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+YALLIVDSA ALYRTDYSGRGELSARQMHLARFLRMLLRLADE
Sbjct: 215 RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADE 258
>sp|Q91918|RA51A_XENLA DNA repair protein RAD51 homolog A OS=Xenopus laevis GN=rad51-a
PE=2 SV=1
Length = 336
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/44 (95%), Positives = 43/44 (97%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+YALLIVDSA ALYRTDYSGRGELSARQMHLARFLRMLLRLADE
Sbjct: 212 RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADE 255
>sp|Q91917|RA51B_XENLA DNA repair protein RAD51 homolog B OS=Xenopus laevis GN=rad51-b
PE=2 SV=1
Length = 336
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 42/44 (95%), Positives = 43/44 (97%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+YALLIVDSA ALYRTDYSGRGELSARQMHLARFLRMLLRLADE
Sbjct: 212 RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADE 255
>sp|P94102|RAD51_ARATH DNA repair protein RAD51 homolog 1 OS=Arabidopsis thaliana GN=RAD51
PE=1 SV=1
Length = 342
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 41/44 (93%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
++ALLIVDSA ALYRTD+SGRGELSARQMHLA+FLR L +LADE
Sbjct: 218 RFALLIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADE 261
>sp|Q40134|RAD51_SOLLC DNA repair protein RAD51 homolog OS=Solanum lycopersicum GN=RAD51
PE=2 SV=1
Length = 342
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 41/44 (93%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
++AL+IVDSA ALYRTD+SGRGELSARQMHLA+FLR L +LADE
Sbjct: 218 RFALMIVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADE 261
>sp|P36601|RAD51_SCHPO DNA repair protein rhp51 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp51 PE=1 SV=1
Length = 365
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 40/44 (90%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+++LL+VDS ALYRTD+SGRGELSARQMHLARF+R L RLADE
Sbjct: 237 RFSLLVVDSCTALYRTDFSGRGELSARQMHLARFMRTLQRLADE 280
>sp|Q9XED7|R51A2_MAIZE DNA repair protein RAD51 homolog B OS=Zea mays GN=RAD51B PE=2 SV=1
Length = 340
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 41/44 (93%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
++AL++VDSA ALYRTD+SGRGELSARQMHLA+FLR L +LADE
Sbjct: 216 RFALMVVDSATALYRTDFSGRGELSARQMHLAKFLRSLQKLADE 259
>sp|Q99133|RAD51_USTMA DNA repair protein RAD51 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RAD51 PE=3 SV=1
Length = 339
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 41/44 (93%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+++LLIVDS +LYRTD+SGRGELSARQMHLA+FLR L+RLADE
Sbjct: 215 RFSLLIVDSLTSLYRTDFSGRGELSARQMHLAKFLRGLMRLADE 258
>sp|P25454|RAD51_YEAST DNA repair protein RAD51 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RAD51 PE=1 SV=1
Length = 400
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 41/44 (93%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+++L++VDS MALYRTD+SGRGELSARQMHLA+F+R L RLAD+
Sbjct: 273 RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQ 316
>sp|Q27297|RAD51_DROME DNA repair protein Rad51 homolog OS=Drosophila melanogaster
GN=spn-A PE=2 SV=1
Length = 336
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 39/44 (88%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+YALLIVDSAMALYR+DY GRGEL+ARQ HL FLRML RLADE
Sbjct: 212 RYALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQRLADE 255
>sp|Q67EU8|R51A1_MAIZE DNA repair protein RAD51 homolog A OS=Zea mays GN=RAD51A PE=2 SV=2
Length = 340
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 41/44 (93%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
++AL++VDSA ALYRTD+SGRGELSARQMH+A+FLR L +LADE
Sbjct: 216 RFALMVVDSATALYRTDFSGRGELSARQMHMAKFLRSLQKLADE 259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.298 0.122 0.299
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,366,846
Number of Sequences: 539616
Number of extensions: 2225341
Number of successful extensions: 333018
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7046
Number of HSP's successfully gapped in prelim test: 649
Number of HSP's that attempted gapping in prelim test: 75799
Number of HSP's gapped (non-prelim): 114759
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 55 (25.8 bits)