Query psy17736
Match_columns 99
No_of_seqs 117 out of 295
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 21:39:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i1q_A DNA repair and recombin 98.5 1.3E-07 4.5E-12 70.5 4.8 46 2-47 204-249 (322)
2 1v5w_A DMC1, meiotic recombina 98.4 2.2E-07 7.5E-12 71.3 5.5 46 2-47 219-264 (343)
3 2z43_A DNA repair and recombin 98.4 2.3E-07 7.9E-12 70.1 5.3 46 2-47 203-248 (324)
4 3lda_A DNA repair protein RAD5 98.3 6.7E-07 2.3E-11 71.5 4.8 46 2-47 273-318 (400)
5 1pzn_A RAD51, DNA repair and r 98.2 9E-07 3.1E-11 68.5 4.8 46 2-47 231-276 (349)
6 3io5_A Recombination and repai 97.9 4.5E-06 1.5E-10 67.2 3.0 47 2-48 111-163 (333)
7 1n0w_A DNA repair protein RAD5 97.8 3E-05 1E-09 53.6 4.6 46 2-47 119-164 (243)
8 4a74_A DNA repair and recombin 97.5 0.00015 5.1E-09 49.5 5.3 46 2-47 125-170 (231)
9 2zr9_A Protein RECA, recombina 97.0 0.00088 3E-08 52.0 5.1 46 2-47 139-188 (349)
10 3hr8_A Protein RECA; alpha and 97.0 0.0004 1.4E-08 55.0 3.1 46 2-47 139-188 (356)
11 1u94_A RECA protein, recombina 96.9 0.0011 3.8E-08 51.9 4.9 46 2-47 141-190 (356)
12 1xp8_A RECA protein, recombina 96.7 0.0006 2.1E-08 53.7 2.3 46 2-47 152-201 (366)
13 3cmu_A Protein RECA, recombina 96.0 0.003 1E-07 60.4 3.0 44 2-47 810-859 (2050)
14 2cvh_A DNA repair and recombin 95.8 0.0067 2.3E-07 41.1 3.1 41 3-47 106-146 (220)
15 3bh0_A DNAB-like replicative h 95.7 0.012 4.3E-07 44.2 4.6 41 2-47 179-221 (315)
16 1q57_A DNA primase/helicase; d 95.1 0.015 5.1E-07 46.1 3.5 41 2-47 354-394 (503)
17 2zts_A Putative uncharacterize 95.1 0.0087 3E-07 41.0 1.9 38 2-47 135-172 (251)
18 3cmu_A Protein RECA, recombina 95.0 0.013 4.3E-07 56.2 3.2 46 2-47 112-161 (2050)
19 2q6t_A DNAB replication FORK h 94.8 0.021 7.3E-07 44.8 3.7 44 2-47 310-353 (444)
20 3cmw_A Protein RECA, recombina 94.8 0.019 6.6E-07 54.0 3.8 46 2-47 461-510 (1706)
21 2r6a_A DNAB helicase, replicat 94.7 0.03 1E-06 44.1 4.2 42 2-47 313-354 (454)
22 3cmw_A Protein RECA, recombina 94.5 0.025 8.4E-07 53.3 3.9 46 2-47 810-859 (1706)
23 1nlf_A Regulatory protein REPA 93.4 0.094 3.2E-06 37.9 4.3 39 2-47 133-171 (279)
24 3bgw_A DNAB-like replicative h 93.1 0.092 3.1E-06 41.9 4.3 41 2-47 308-350 (444)
25 4a1f_A DNAB helicase, replicat 91.9 0.04 1.4E-06 43.2 0.7 41 2-47 156-196 (338)
26 2ca6_A RAN GTPase-activating p 91.0 0.055 1.9E-06 40.0 0.6 9 42-50 325-333 (386)
27 2w0m_A SSO2452; RECA, SSPF, un 89.6 0.2 6.9E-06 33.5 2.5 35 2-46 121-157 (235)
28 1cr0_A DNA primase/helicase; R 89.4 0.24 8.2E-06 35.8 2.9 41 2-47 147-187 (296)
29 2dr3_A UPF0273 protein PH0284; 89.2 0.28 9.6E-06 33.4 3.0 36 2-47 128-163 (247)
30 2ca6_A RAN GTPase-activating p 87.3 0.11 3.8E-06 38.3 -0.0 7 32-38 325-331 (386)
31 2vhj_A Ntpase P4, P4; non- hyd 84.7 0.48 1.6E-05 37.8 2.4 43 4-47 184-226 (331)
32 1exn_A 5'-exonuclease, 5'-nucl 73.3 2 6.9E-05 33.4 2.6 38 4-46 20-57 (290)
33 1tf7_A KAIC; homohexamer, hexa 69.4 3.5 0.00012 32.9 3.3 35 2-45 371-405 (525)
34 3clj_A Protein NRD1; CTD-inter 56.9 4.9 0.00017 29.0 1.8 37 4-40 61-105 (157)
35 2ehv_A Hypothetical protein PH 54.2 15 0.00051 24.8 3.8 16 2-17 135-150 (251)
36 1c9k_A COBU, adenosylcobinamid 33.0 58 0.002 23.2 4.3 16 4-19 75-90 (180)
37 2qv5_A AGR_C_5032P, uncharacte 30.9 42 0.0015 25.5 3.4 42 3-47 154-211 (261)
38 2hz5_A Dynein light chain 2A, 26.4 84 0.0029 21.0 3.9 41 3-48 28-68 (106)
39 3l7h_A RE64145P, roadblock; LC 20.9 83 0.0028 20.7 3.0 41 3-48 19-59 (97)
No 1
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=98.48 E-value=1.3e-07 Score=70.52 Aligned_cols=46 Identities=37% Similarity=0.660 Sum_probs=42.7
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||++++||.++.|+|.++.|++.+.++++.|.++|++++
T Consensus 204 ~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~ 249 (322)
T 2i1q_A 204 NIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFN 249 (322)
T ss_dssp EEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999888888899999999999999999876
No 2
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.44 E-value=2.2e-07 Score=71.29 Aligned_cols=46 Identities=50% Similarity=0.839 Sum_probs=43.0
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||++++|+.+|.|+|.++.|++.+.++++.|.++|+.++
T Consensus 219 ~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~ 264 (343)
T 1v5w_A 219 IFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYN 264 (343)
T ss_dssp SEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5799999999999999999888888899999999999999999886
No 3
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.43 E-value=2.3e-07 Score=70.12 Aligned_cols=46 Identities=37% Similarity=0.624 Sum_probs=43.0
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||++++|+.++.|+|.++.|++.+.++++.|.++|++++
T Consensus 203 ~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~ 248 (324)
T 2z43_A 203 SIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYD 248 (324)
T ss_dssp TEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5799999999999999999888888899999999999999999886
No 4
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.28 E-value=6.7e-07 Score=71.47 Aligned_cols=46 Identities=70% Similarity=1.113 Sum_probs=37.6
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||++++|+.+++|+|.++.||+.+.+++..|.+||++|+
T Consensus 273 ~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~g 318 (400)
T 3lda_A 273 RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFG 318 (400)
T ss_dssp CEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999999999999875
No 5
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.25 E-value=9e-07 Score=68.47 Aligned_cols=46 Identities=46% Similarity=0.641 Sum_probs=43.0
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||+|++|+.++.|++.++.|++.+.++++.|.++|++++
T Consensus 231 ~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~ 276 (349)
T 1pzn_A 231 PVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD 276 (349)
T ss_dssp CEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999999999999999999999998875
No 6
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.92 E-value=4.5e-06 Score=67.25 Aligned_cols=47 Identities=15% Similarity=0.259 Sum_probs=32.5
Q ss_pred ccceeeeechhhhh-hhhcCCC-cc--hH--HHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALY-RTDYSGR-GE--LS--ARQMHLARFLRMLLRLADEQKR 48 (99)
Q Consensus 2 ~v~LIIVDSiTALF-R~EysGR-Ge--LA--~RQq~L~kqL~~L~rLAr~f~~ 48 (99)
+++||||||+++|| |.++.|. |. .. .+++.++++|+.|.++|++++.
T Consensus 111 ~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i 163 (333)
T 3io5_A 111 EKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNI 163 (333)
T ss_dssp CCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 47899999999999 5777775 22 11 3678999999999999998863
No 7
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.75 E-value=3e-05 Score=53.55 Aligned_cols=46 Identities=91% Similarity=1.271 Sum_probs=34.4
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||+++++...++|++..+.|++.+..++..|.++|+.++
T Consensus 119 ~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~ 164 (243)
T 1n0w_A 119 RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFG 164 (243)
T ss_dssp CEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4789999999999999998877777788889999999999998764
No 8
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.52 E-value=0.00015 Score=49.53 Aligned_cols=46 Identities=46% Similarity=0.641 Sum_probs=40.9
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++|||+|++++++...++|.+..+.|++.+..++..|.++++.++
T Consensus 125 ~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g 170 (231)
T 4a74_A 125 PVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD 170 (231)
T ss_dssp CEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCC
Confidence 4689999999999999999987788888889999999999988764
No 9
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.98 E-value=0.00088 Score=52.04 Aligned_cols=46 Identities=20% Similarity=0.378 Sum_probs=34.9
Q ss_pred ccceeeeechhhhh-hhhcCCC-cch--HHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALY-RTDYSGR-GEL--SARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALF-R~EysGR-GeL--A~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||+++++ +.++.|+ |.. ..+++.+.++|..|..+|++++
T Consensus 139 ~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~ 188 (349)
T 2zr9_A 139 ALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSG 188 (349)
T ss_dssp CCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999 7888765 221 1344578999999999998865
No 10
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.98 E-value=0.0004 Score=54.96 Aligned_cols=46 Identities=26% Similarity=0.429 Sum_probs=36.5
Q ss_pred ccceeeeechhhhh-hhhcCCC-cc--hHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALY-RTDYSGR-GE--LSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALF-R~EysGR-Ge--LA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||++++| +.+++|+ |. ...+.+.++++|+.|.++|+.++
T Consensus 139 ~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~ 188 (356)
T 3hr8_A 139 VVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSK 188 (356)
T ss_dssp CCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSS
T ss_pred CCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 37899999999999 5899876 33 22456788999999999998764
No 11
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.89 E-value=0.0011 Score=51.93 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=34.6
Q ss_pred ccceeeeechhhhh-hhhcCCC-cch--HHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALY-RTDYSGR-GEL--SARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALF-R~EysGR-GeL--A~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||+++++ +.++.|+ |.. ..+.+.+.++|..|..+|++++
T Consensus 141 ~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~ 190 (356)
T 1u94_A 141 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 190 (356)
T ss_dssp CCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999 6787765 221 1233578999999999998876
No 12
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.73 E-value=0.0006 Score=53.74 Aligned_cols=46 Identities=24% Similarity=0.377 Sum_probs=33.1
Q ss_pred ccceeeeechhhhh-hhhcCCC-cc--hHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALY-RTDYSGR-GE--LSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALF-R~EysGR-Ge--LA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||+++++ |.++.|+ |. ...+.+.+.++++.|..+|++++
T Consensus 152 ~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~ 201 (366)
T 1xp8_A 152 AIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTG 201 (366)
T ss_dssp CCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcC
Confidence 47899999999999 6787654 22 11345778999999999998765
No 13
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.03 E-value=0.003 Score=60.38 Aligned_cols=44 Identities=27% Similarity=0.425 Sum_probs=36.2
Q ss_pred ccceeeeechhhhhh-hhcCCC-c----chHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYR-TDYSGR-G----ELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR-~EysGR-G----eLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||++++|+ ..+.++ | .++.|+ ++++++.|.+||+.++
T Consensus 810 ~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Re--is~ilr~Lk~lAke~~ 859 (2050)
T 3cmu_A 810 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARM--MSQAMRKLAGNLKQSN 859 (2050)
T ss_dssp CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHH--HHHHHHHHHHHHHTTT
T ss_pred CCCEEEEcchhhhcccccccCCCCchhhHHHHHH--HHHHHHHHHHHHHHhC
Confidence 478999999999998 777654 3 456554 9999999999999875
No 14
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.78 E-value=0.0067 Score=41.08 Aligned_cols=41 Identities=37% Similarity=0.522 Sum_probs=31.9
Q ss_pred cceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 3 YALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 3 v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
++|||||++++++...- . ...|++.+..++..|.++|+.++
T Consensus 106 ~~lliiD~~~~~l~~~~--~--~~~~~~~~~~~~~~L~~l~~~~~ 146 (220)
T 2cvh_A 106 FALVVVDSITAHYRAEE--N--RSGLIAELSRQLQVLLWIARKHN 146 (220)
T ss_dssp EEEEEEECCCCCTTGGG--G--SSTTHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCcHHHhhhcC--c--hHHHHHHHHHHHHHHHHHHHHcC
Confidence 78999999999987642 1 12346788999999999998775
No 15
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.70 E-value=0.012 Score=44.21 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=32.5
Q ss_pred ccc--eeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYA--LLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~--LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++ ||||||++.++-. +. ...|++.+..+++.|..||++++
T Consensus 179 ~~~~~lVVID~l~~l~~~---~~--~~~r~~~i~~~~~~Lk~lAk~~~ 221 (315)
T 3bh0_A 179 PGKRVIVMIDYLQLLEPA---KA--NDSRTNQISQISRDLKKMARELD 221 (315)
T ss_dssp SSCCEEEEEECGGGSBCS---CT--TSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEeCchhcCCC---CC--CCCHHHHHHHHHHHHHHHHHHhC
Confidence 467 9999999998642 21 13467889999999999999986
No 16
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.12 E-value=0.015 Score=46.05 Aligned_cols=41 Identities=12% Similarity=0.185 Sum_probs=32.2
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||++.+. .. +++ ..|++.+..+++.|.+||+.++
T Consensus 354 ~~~lvVID~l~~l~-~~--~~~--~~~~~~~~~~~~~Lk~lak~~~ 394 (503)
T 1q57_A 354 GCDVIILDHISIVV-SA--SGE--SDERKMIDNLMTKLKGFAKSTG 394 (503)
T ss_dssp CCSEEEEECTTCCC-SC--CSC--CCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEccchhcC-CC--CCC--CCHHHHHHHHHHHHHHHHHHHC
Confidence 47899999999874 22 211 2468899999999999999986
No 17
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.09 E-value=0.0087 Score=41.02 Aligned_cols=38 Identities=16% Similarity=0.076 Sum_probs=29.7
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
++++|||||++.+++.. + +++.+.+++..|.++|++++
T Consensus 135 ~~~~vviD~~~~l~~~~--~------~~~~~~~~~~~L~~~a~~~~ 172 (251)
T 2zts_A 135 NAKRLVIDSIPSIALRL--E------EERKIREVLLKLNTILLEMG 172 (251)
T ss_dssp TCSEEEEECHHHHHHHS--S------SGGGHHHHHHHHHHHHHHHC
T ss_pred CCcEEEEEcHHHHhhhc--c------ChHHHHHHHHHHHHHHHHcC
Confidence 46899999999998743 2 24557788999999999875
No 18
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.98 E-value=0.013 Score=56.21 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=34.1
Q ss_pred ccceeeeechhhhhhhh-cCC---CcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTD-YSG---RGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~E-ysG---RGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||+++|||.. ..+ ......|.+.+.+++..|.++|++++
T Consensus 112 ~~~lVVIDSISaL~~~~e~~~e~~d~~~~~raR~l~~~l~~L~~~ak~~g 161 (2050)
T 3cmu_A 112 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 161 (2050)
T ss_dssp CCSEEEESCGGGCCCHHHHHSCSSSCCTTHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcEEEEcChHHhhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999973 222 11233455678999999999998764
No 19
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.84 E-value=0.021 Score=44.78 Aligned_cols=44 Identities=30% Similarity=0.316 Sum_probs=32.2
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||++.++... .++. ...|++.+..+++.|..||+.++
T Consensus 310 ~~~lIvID~l~~~~~~~-~~~~-~~~r~~~i~~i~~~Lk~lAke~~ 353 (444)
T 2q6t_A 310 QVGLIIIDYLQLMSGPG-SGKS-GENRQQEIAAISRGLKALARELG 353 (444)
T ss_dssp CCCEEEEECGGGCBCC---------CHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEcChhhcCCCc-CCCC-CCCHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999986321 1221 13478999999999999999987
No 20
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.80 E-value=0.019 Score=54.02 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=36.3
Q ss_pred ccceeeeechhhhh-hhhcCCC-cc--hHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALY-RTDYSGR-GE--LSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALF-R~EysGR-Ge--LA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||++++| +.++.|+ |. ...+.+.+.++|+.|..+|++++
T Consensus 461 ~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~ 510 (1706)
T 3cmw_A 461 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 510 (1706)
T ss_dssp CCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcC
Confidence 47899999999999 5776654 22 23456789999999999998876
No 21
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.68 E-value=0.03 Score=44.06 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=32.0
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||++.++..... ...|.+.+..++..|..||++++
T Consensus 313 ~~~livID~l~~~~~~~~~----~~~~~~~i~~i~~~Lk~lAke~~ 354 (454)
T 2r6a_A 313 GLGMIVIDYLQLIQGSGRS----KENRQQEVSEISRSLKALARELE 354 (454)
T ss_dssp CCCEEEEECGGGSCCSCC--------CHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEccHHHhccCCCC----CCCHHHHHHHHHHHHHHHHHHhC
Confidence 5789999999998754321 12357889999999999999875
No 22
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.53 E-value=0.025 Score=53.33 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=36.5
Q ss_pred ccceeeeechhhhh-hhhcCCC-cch--HHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALY-RTDYSGR-GEL--SARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALF-R~EysGR-GeL--A~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||+.+++ +.++.|+ |.. ..+.+.+..+|..|..+|++++
T Consensus 810 ~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~g 859 (1706)
T 3cmw_A 810 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 859 (1706)
T ss_dssp CCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcC
Confidence 47899999999999 7777665 332 1356789999999999999876
No 23
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.38 E-value=0.094 Score=37.90 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=27.6
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||+++++..+.. . ...+..++..|..+|+.++
T Consensus 133 ~~~livlDe~~~~~~~d~~-----~--~~~~~~~~~~L~~l~~~~g 171 (279)
T 1nlf_A 133 GRRLMVLDTLRRFHIEEEN-----A--SGPMAQVIGRMEAIAADTG 171 (279)
T ss_dssp TCSEEEEECGGGGCCSCTT-----C--HHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEECCHHHhcCCCcC-----c--hHHHHHHHHHHHHHHHHcC
Confidence 4789999999998865311 1 2446677788888887654
No 24
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.11 E-value=0.092 Score=41.93 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=32.4
Q ss_pred ccc--eeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYA--LLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~--LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++ ||||||+..++-. +.. ..|++.+..+++.|..||++++
T Consensus 308 ~~~~~lIVID~Lq~~~~~---~~~--~~r~~~i~~i~~~Lk~lAke~~ 350 (444)
T 3bgw_A 308 PGKRVIVMIDYLQLLEPA---KAN--DSRTNQISQISRDLKKMARELD 350 (444)
T ss_dssp CSSCEEEEEECSTTSBCS---CSS--SCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEecHHhccCC---CCC--CCHHHHHHHHHHHHHHHHHHhC
Confidence 467 9999999987632 211 3468899999999999999986
No 25
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.90 E-value=0.04 Score=43.23 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=32.9
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++||||||+..+..... ...|++.+..++..|..||+.++
T Consensus 156 g~~lIVIDyLqlm~~~~~-----~~~r~~ei~~isr~LK~lAkel~ 196 (338)
T 4a1f_A 156 ELGIAFIDYLQLMSGSKA-----TKERHEQIAEISRELKTLARELE 196 (338)
T ss_dssp TEEEEEEEEEECCCTHHH-----HHHCCCCHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEechHHhcCCCC-----CCChHHHHHHHHHHHHHHHHHcC
Confidence 579999999998765331 13467789999999999999987
No 26
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=90.96 E-value=0.055 Score=39.95 Aligned_cols=9 Identities=11% Similarity=0.147 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q psy17736 42 LADEQKRRK 50 (99)
Q Consensus 42 LAr~f~~~~ 50 (99)
++..+.+.|
T Consensus 325 l~~~l~~~~ 333 (386)
T 2ca6_A 325 IREVFSTRG 333 (386)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhhhcC
Confidence 333333333
No 27
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.62 E-value=0.2 Score=33.54 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=22.4
Q ss_pred ccc--eeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYA--LLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQ 46 (99)
Q Consensus 2 ~v~--LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f 46 (99)
+++ |||||++++++..+. . ....++..|.++++.+
T Consensus 121 ~~~~~llilDe~~~~~~~d~------~----~~~~~~~~l~~~~~~~ 157 (235)
T 2w0m_A 121 GYGKARLVIDSVSALFLDKP------A----MARKISYYLKRVLNKW 157 (235)
T ss_dssp CSSCEEEEEETGGGGSSSCG------G----GHHHHHHHHHHHHHHT
T ss_pred CCCceEEEEECchHhhcCCH------H----HHHHHHHHHHHHHHhC
Confidence 356 999999999975331 1 1345566666666543
No 28
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.44 E-value=0.24 Score=35.83 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=24.4
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+++|||||++++++... ..+ .+.+.+..++..|..||+.++
T Consensus 147 ~p~llilDept~~~~~~----~~~-d~~~~~~~i~~~L~~la~~~~ 187 (296)
T 1cr0_A 147 GCDVIILDHISIVVSAS----GES-DERKMIDNLMTKLKGFAKSTG 187 (296)
T ss_dssp CCSEEEEEEEC----------------CHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEcCccccCCCC----CCC-CHHHHHHHHHHHHHHHHHHhC
Confidence 57899999999987531 111 233567778888888888764
No 29
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.20 E-value=0.28 Score=33.43 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=22.7
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
++++|||||+++++- +. .. ...+++..|.+++++++
T Consensus 128 ~~~~vviD~~~~l~~----~~--~~----~~~~~l~~l~~~~~~~~ 163 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYI----NK--PA----MARSIILQLKRVLAGTG 163 (247)
T ss_dssp TCCEEEEETSGGGTT----TC--GG----GHHHHHHHHHHHHHHTT
T ss_pred CCCEEEECCchHhhc----CC--HH----HHHHHHHHHHHHHHHCC
Confidence 468999999999871 22 11 12345666777775543
No 30
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=87.34 E-value=0.11 Score=38.33 Aligned_cols=7 Identities=0% Similarity=0.187 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy17736 32 LARFLRM 38 (99)
Q Consensus 32 L~kqL~~ 38 (99)
+...+..
T Consensus 325 l~~~l~~ 331 (386)
T 2ca6_A 325 IREVFST 331 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 3333333
No 31
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=84.68 E-value=0.48 Score=37.82 Aligned_cols=43 Identities=9% Similarity=0.048 Sum_probs=25.9
Q ss_pred ceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 4 ALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 4 ~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
+||||||+.+++..... .+......+.+.++|..|.+++..++
T Consensus 184 ~LLVIDsI~aL~~~~~~-~s~~G~v~~~lrqlL~~L~~~~k~~g 226 (331)
T 2vhj_A 184 RVIVIDSLKNVIGAAGG-NTTSGGISRGAFDLLSDIGAMAASRG 226 (331)
T ss_dssp SEEEEECCTTTC------------CCHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEeccccccccccc-ccccchHHHHHHHHHHHHHHHHhhCC
Confidence 49999999998654432 11111124668888999998887654
No 32
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=73.34 E-value=2 Score=33.38 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=30.6
Q ss_pred ceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy17736 4 ALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQ 46 (99)
Q Consensus 4 ~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f 46 (99)
+|++||.-.-+||+-|...|.. ++..|++.|.+|-+.+
T Consensus 20 ~lllIDg~~llyRa~~~~~G~p-----av~Gf~~~l~~ll~~~ 57 (290)
T 1exn_A 20 NLMIVDGTNLGFRFKHNNSKKP-----FASSYVSTIQSLAKSY 57 (290)
T ss_dssp EEEEEEHHHHHHHHHHHCSSSC-----CHHHHHHHHHHHHHHT
T ss_pred CEEEEECcHHHHHHHhCCCCch-----HHHHHHHHHHHHHHHc
Confidence 6999999999999988666664 5777888888877664
No 33
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=69.37 E-value=3.5 Score=32.86 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=22.5
Q ss_pred ccceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q psy17736 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~ 45 (99)
++++|||||+++|+.. +.| +| +..++..|++.+..
T Consensus 371 ~p~llilDp~~~Ld~~-~~~------~~--~~~~i~~ll~~l~~ 405 (525)
T 1tf7_A 371 KPARIAIDSLSALARG-VSN------NA--FRQFVIGVTGYAKQ 405 (525)
T ss_dssp CCSEEEEECHHHHTSS-SCH------HH--HHHHHHHHHHHHHH
T ss_pred CCCEEEEcChHHHHhh-CCh------HH--HHHHHHHHHHHHHh
Confidence 5789999999998875 332 12 45555555555543
No 34
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=56.93 E-value=4.9 Score=29.03 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=23.9
Q ss_pred ceeeeechhhhhhhhc--CCC------cchHHHHHHHHHHHHHHH
Q psy17736 4 ALLIVDSAMALYRTDY--SGR------GELSARQMHLARFLRMLL 40 (99)
Q Consensus 4 ~LIIVDSiTALFR~Ey--sGR------GeLA~RQq~L~kqL~~L~ 40 (99)
+|-|||||+.-|+..+ .|. |.-|..-++++..+..|.
T Consensus 61 ~LYVvDSIvR~~~~~~~k~g~~~~a~~gt~a~~v~~~~e~i~~l~ 105 (157)
T 3clj_A 61 SLYIIDSIGRAYLDETRSNSNSSSNKPGTCAHAINTLGEVIQELL 105 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTCCC----STTSHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHhcCCccCCCCccHHHHHHHHHHHHHHHH
Confidence 5679999999999876 332 445544445555555553
No 35
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=54.17 E-value=15 Score=24.77 Aligned_cols=16 Identities=19% Similarity=0.193 Sum_probs=13.4
Q ss_pred ccceeeeechhhhhhh
Q psy17736 2 KYALLIVDSAMALYRT 17 (99)
Q Consensus 2 ~v~LIIVDSiTALFR~ 17 (99)
+.++||+|+++++...
T Consensus 135 ~p~~lilDep~~~ld~ 150 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALR 150 (251)
T ss_dssp TCSEEEEECHHHHHHH
T ss_pred CCCEEEEccHHHHHhh
Confidence 4689999999998863
No 36
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=32.95 E-value=58 Score=23.19 Aligned_cols=16 Identities=0% Similarity=0.125 Sum_probs=14.2
Q ss_pred ceeeeechhhhhhhhc
Q psy17736 4 ALLIVDSAMALYRTDY 19 (99)
Q Consensus 4 ~LIIVDSiTALFR~Ey 19 (99)
++|+|||+|.++...+
T Consensus 75 ~~VLvDclt~wl~n~l 90 (180)
T 1c9k_A 75 DAILLECITTMVTNLL 90 (180)
T ss_dssp CEEEEECHHHHHHHHH
T ss_pred CeEEEcCHHHHHHHHH
Confidence 6899999999998765
No 37
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=30.86 E-value=42 Score=25.53 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=29.1
Q ss_pred cceeeeechhhh----------------hhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 3 YALLIVDSAMAL----------------YRTDYSGRGELSARQMHLARFLRMLLRLADEQK 47 (99)
Q Consensus 3 v~LIIVDSiTAL----------------FR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~ 47 (99)
.+|+.|||-|+- .|.-|.+. ... ...+.+||..+.++|++.+
T Consensus 154 ~gL~FlDS~Ts~~S~a~~~A~~~gvp~~~rdvFLD~-~~~--~~~I~~qL~~a~~~Ar~~G 211 (261)
T 2qv5_A 154 RGLLFLDDGSSAQSLSGGIAKAISAPQGFADVLLDG-EVT--EASILRKLDDLERIARRNG 211 (261)
T ss_dssp TTCEEEECSCCTTCCHHHHHHHHTCCEEECSEETTS-SCS--HHHHHHHHHHHHHHHHHHS
T ss_pred CCCEEEcCCCCcccHHHHHHHHcCCCeEEeeeecCC-CCC--HHHHHHHHHHHHHHHHhcC
Confidence 479999999842 23334443 222 4578899999999998764
No 38
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=26.37 E-value=84 Score=20.98 Aligned_cols=41 Identities=10% Similarity=0.204 Sum_probs=31.3
Q ss_pred cceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 3 YALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQKR 48 (99)
Q Consensus 3 v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~~ 48 (99)
.+.||+|+--...|+.+.. ....+.+..+..|...|+...+
T Consensus 28 ~G~iIln~~G~pIrSt~d~-----~~~~~yA~li~~L~~~A~~~vr 68 (106)
T 2hz5_A 28 QGIIVVNTEGIPIKSTMDN-----PTTTQYASLMHSFILKARSTVR 68 (106)
T ss_dssp EEEEEECTTCCEEEESSCH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCeEEEecCc-----hHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999988888866432 2356788888999999988865
No 39
>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A
Probab=20.89 E-value=83 Score=20.69 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=30.7
Q ss_pred cceeeeechhhhhhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy17736 3 YALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQKR 48 (99)
Q Consensus 3 v~LIIVDSiTALFR~EysGRGeLA~RQq~L~kqL~~L~rLAr~f~~ 48 (99)
.|.||+|+--...|+.+.. ....+.+.++..|...|+...+
T Consensus 19 ~G~iI~n~~G~pirst~d~-----~~~~~yA~~~~~L~~~a~~~vr 59 (97)
T 3l7h_A 19 VGTIVVNNEGIPVKSTLDN-----TTTVQYAGLMSQLADKARSVVR 59 (97)
T ss_dssp EEEEEEETTSCEEEESSCH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCEeEEeCCh-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999877788876532 2356788888888888887765
Done!