RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17736
(99 letters)
>gnl|CDD|233794 TIGR02239, recomb_RAD51, DNA repair protein RAD51. This eukaryotic
sequence family consists of RAD51, a protein involved in
DNA homologous recombination and repair. It is similar
in sequence the exclusively meiotic recombinase DMC1
(TIGR02238), to archaeal families RadA (TIGR02236) and
RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Length = 316
Score = 93.3 bits (232), Expect = 2e-24
Identities = 38/44 (86%), Positives = 41/44 (93%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
++ALLIVDSA ALYRTD+SGRGELSARQMHLARFLR L RLADE
Sbjct: 191 RFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADE 234
>gnl|CDD|117002 pfam08423, Rad51, Rad51. Rad51 is a DNA repair and recombination
protein and is a homologue of the bacterial ATPase RecA
protein.
Length = 261
Score = 91.2 bits (227), Expect = 5e-24
Identities = 34/44 (77%), Positives = 39/44 (88%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
++ALLIVDSA ALYRTD+SGRGEL+ RQ HLA+FLR L RLADE
Sbjct: 138 RFALLIVDSATALYRTDFSGRGELAERQQHLAKFLRSLQRLADE 181
>gnl|CDD|185407 PTZ00035, PTZ00035, Rad51 protein; Provisional.
Length = 337
Score = 84.7 bits (210), Expect = 4e-21
Identities = 31/44 (70%), Positives = 37/44 (84%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
++ALLIVDSA AL+R DYSGRGEL+ RQ HL +FLR L +LADE
Sbjct: 213 RFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADE 256
>gnl|CDD|178728 PLN03186, PLN03186, DNA repair protein RAD51 homolog; Provisional.
Length = 342
Score = 83.2 bits (206), Expect = 1e-20
Identities = 34/44 (77%), Positives = 40/44 (90%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
++AL+IVDSA ALYRT++SGRGELSARQMHL +FLR L RLADE
Sbjct: 218 RFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADE 261
>gnl|CDD|238543 cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B. This group of
recombinases includes the eukaryotic proteins RAD51,
RAD55/57 and the meiosis-specific protein DMC1, and the
archaeal proteins radA and radB. They are closely
related to the bacterial RecA group. Rad51 proteins
catalyze a similiar recombination reaction as RecA,
using ATP-dependent DNA binding activity and a
DNA-dependent ATPase. However, this reaction is less
efficient and requires accessory proteins such as
RAD55/57 .
Length = 235
Score = 74.9 bits (185), Expect = 5e-18
Identities = 26/44 (59%), Positives = 33/44 (75%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+ L+IVDS AL+R ++ GRGEL+ RQ HLA+ LR L RLADE
Sbjct: 115 RIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADE 158
>gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles in
homologous recombination, DNA repair, and the induction
of the SOS response. RecA couples ATP hydrolysis to DNA
strand exchange. While prokaryotes have a single RecA
protein, eukaryotes have multiple RecA homologs such as
Rad51, DMC1 and Rad55/57. Archaea have the RecA-like
homologs radA and radB.
Length = 226
Score = 66.8 bits (164), Expect = 6e-15
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+ L++VDS AL+R ++ GRG L+ R L++ LR LLRLAD+
Sbjct: 114 RVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADK 157
>gnl|CDD|131292 TIGR02238, recomb_DMC1, meiotic recombinase Dmc1. This model
describes DMC1, a subfamily of a larger family of DNA
repair and recombination proteins. It is eukaryotic only
and most closely related to eukaryotic RAD51. It also
resembles archaeal RadA (TIGR02236) and RadB (TIGR02237)
and bacterial RecA (TIGR02012). It has been
characterized for human as a recombinase active only in
meiosis.
Length = 313
Score = 59.0 bits (143), Expect = 8e-12
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 3 YALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+ LLIVDS MAL+R D+SGRGELS RQ LA+ L L ++++E
Sbjct: 192 FRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEE 234
>gnl|CDD|215620 PLN03187, PLN03187, meiotic recombination protein DMC1 homolog;
Provisional.
Length = 344
Score = 56.3 bits (136), Expect = 7e-11
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 3 YALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
+ LLIVDS +AL+R D++GRGEL+ RQ LA+ L L ++A+E
Sbjct: 222 FRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEE 264
>gnl|CDD|223544 COG0468, RecA, RecA/RadA recombinase [DNA replication,
recombination, and repair].
Length = 279
Score = 51.9 bits (125), Expect = 2e-09
Identities = 19/44 (43%), Positives = 25/44 (56%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
K LL+VDS AL R + G L R L++ LR L RLA++
Sbjct: 141 KIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRLANK 184
>gnl|CDD|235273 PRK04301, radA, DNA repair and recombination protein RadA;
Validated.
Length = 317
Score = 51.4 bits (124), Expect = 4e-09
Identities = 22/40 (55%), Positives = 27/40 (67%)
Query: 5 LLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLAD 44
L+IVDS A +R +Y GRG L+ RQ L + L LLRLAD
Sbjct: 201 LVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLAD 240
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 50.4 bits (120), Expect = 1e-08
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
KG + + + EEEEEEEEE+EEEEEEE+E+EEE++ NEE
Sbjct: 850 KGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 44.2 bits (104), Expect = 2e-06
Identities = 25/37 (67%), Positives = 26/37 (70%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
EEEEE EE EEEEEEEEEEEE+E EE E E Q
Sbjct: 867 EEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQ 903
Score = 38.1 bits (88), Expect = 2e-04
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
D ++ + + EEEEE EE EEEEEEEEE EE E E Q++
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905
Score = 35.7 bits (82), Expect = 0.001
Identities = 21/49 (42%), Positives = 26/49 (53%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
E K KGE E E E+E E E E E+E E E EE E+ E++ E
Sbjct: 700 EAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGE 748
Score = 35.4 bits (81), Expect = 0.002
Identities = 20/43 (46%), Positives = 28/43 (65%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
++E++ + + EEEEE EE EEEEEEE EE E E ++Q
Sbjct: 863 SEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905
Score = 33.4 bits (76), Expect = 0.011
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK-EQEEEDQTNEERVGGQ 99
A+ + +R GEE E E E E EE E ++E E E K E E E + ER G Q
Sbjct: 636 AEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQ 693
Score = 33.0 bits (75), Expect = 0.016
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
DE ++ E + E +++E+ + + + EEEEE+E+EEE++ EE
Sbjct: 830 DETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEE 880
Score = 30.7 bits (69), Expect = 0.080
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
+ E E E E + E E E E E + E+E E E + E G+
Sbjct: 662 ESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGE 709
Score = 30.3 bits (68), Expect = 0.13
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
+RKGE+E E E +E + + E E +E E E E E E + E G +
Sbjct: 688 ERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEE 737
Score = 30.3 bits (68), Expect = 0.14
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
E + + +GE E E E+E E E EE EE E+E E E E + E +T +R +
Sbjct: 711 EAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETE 765
Score = 30.0 bits (67), Expect = 0.16
Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 30/81 (37%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEE------------------------------EE 73
E + + E ++ E ++E E EE
Sbjct: 807 TEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEE 866
Query: 74 EQEEEEEEEKEQEEEDQTNEE 94
E+EEEEEEE+E+EEE++ EE
Sbjct: 867 EEEEEEEEEEEEEEEEEEEEE 887
Score = 29.6 bits (66), Expect = 0.21
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
E+ + + E E E + E E E E + E+E E E E +E D E
Sbjct: 660 GEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEE 714
Score = 29.6 bits (66), Expect = 0.22
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
+ RK + E E E E E + + E E EE E E E E E E++ E G+
Sbjct: 684 EIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGE 739
Score = 28.8 bits (64), Expect = 0.48
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
A+++ + KGE E E E E + E+E E E E +E + K + E ++ E
Sbjct: 667 AEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGET 721
Score = 28.0 bits (62), Expect = 0.76
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
E+ + + E E +E E E EE EE E E E E E + E E + + + +
Sbjct: 713 EEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHE 767
Score = 28.0 bits (62), Expect = 0.83
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEE--EEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
+ ++ + +GE EE+ E+E E E E E E E E++ E+E + E
Sbjct: 648 EGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEAD 705
Score = 28.0 bits (62), Expect = 0.90
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
K + E E + +E E E E E E +E E+E E + ++ E + +E G
Sbjct: 752 KHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEG 799
Score = 27.7 bits (61), Expect = 0.99
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
A+ + + +G+ +E E E E E +E+E+E E + E+ E + ++
Sbjct: 749 AEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE 795
Score = 27.7 bits (61), Expect = 1.0
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+GEE E+ E E E + E E E +E E E E E E + +E+
Sbjct: 737 EGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDED 779
Score = 27.7 bits (61), Expect = 1.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
+G E+E E EE EE E+E E E E + E E E + + E
Sbjct: 724 EGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGE 769
Score = 27.7 bits (61), Expect = 1.1
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
+E + E E ENE E E E + ++E E E + +E + + E +
Sbjct: 661 EESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVE 716
Score = 27.7 bits (61), Expect = 1.3
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
+ + + E + E E E E +E + + + E EE E E E E + E+ +
Sbjct: 677 GENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIE 733
Score = 27.3 bits (60), Expect = 1.5
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ + + +GE E + +E E E E +E + E E +E E E +T E
Sbjct: 674 ETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAE 724
Score = 26.1 bits (57), Expect = 3.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
E + ++ + + E E E E E E E E E+E E E +E E+ +E
Sbjct: 694 EGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDE 744
Score = 26.1 bits (57), Expect = 3.6
Identities = 18/74 (24%), Positives = 31/74 (41%)
Query: 21 GRGELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEE 80
G GE + R E + ++ E+E E + E+ E + +E E + E E
Sbjct: 745 GEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHE 804
Query: 81 EEKEQEEEDQTNEE 94
E E E+D+ +
Sbjct: 805 GETEAGEKDEHEGQ 818
Score = 26.1 bits (57), Expect = 4.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
E E EE EE E+E E E E + E E E +++E + E G+
Sbjct: 731 EIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGK 775
Score = 25.7 bits (56), Expect = 5.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
E E E E EE E+E E E + + E E + +E + E
Sbjct: 729 EGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEA 772
Score = 25.7 bits (56), Expect = 5.7
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
+GE E E E E+E E E E + E E E +E E + E G
Sbjct: 729 EGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEG 774
Score = 25.3 bits (55), Expect = 7.1
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
+ + + +GE E ++ E + E + ++ + ++E E+E E+Q
Sbjct: 797 AEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQ 842
Score = 25.0 bits (54), Expect = 8.8
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEE----EKEQEEEDQTNEE 94
++ Q +E E E N E + E +++E+ + + E+EEE++ EE
Sbjct: 819 SETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEE 874
Score = 25.0 bits (54), Expect = 9.3
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
EQ+ +E +++ E EE E E E + E E+E E E ++ E
Sbjct: 691 GEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEV 741
>gnl|CDD|131290 TIGR02236, recomb_radA, DNA repair and recombination protein RadA.
This family consists exclusively of archaeal RadA
protein, a homolog of bacterial RecA (TIGR02012),
eukaryotic RAD51 (TIGR02239), and archaeal RadB
(TIGR02237). This protein is involved in DNA repair and
recombination. The member from Pyrococcus horikoshii
contains an intein [DNA metabolism, DNA replication,
recombination, and repair].
Length = 310
Score = 44.7 bits (106), Expect = 1e-06
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 4 ALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLAD 44
LLIVDS + +R +Y GRG L+ RQ L + L LLRLAD
Sbjct: 194 KLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLAD 234
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 42.7 bits (100), Expect = 5e-06
Identities = 19/52 (36%), Positives = 38/52 (73%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
LA+E + ++++E+ +E++++EE++EE+EEEEEE K ++ED+ +E
Sbjct: 140 LAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDE 191
Score = 41.6 bits (97), Expect = 1e-05
Identities = 20/58 (34%), Positives = 39/58 (67%), Gaps = 4/58 (6%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEE----KEQEEEDQTNEE 94
R E+ R ++++E+E+E++++EE++E+EEEEEEE +++EED+ E+
Sbjct: 138 RHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGED 195
Score = 40.0 bits (93), Expect = 4e-05
Identities = 18/45 (40%), Positives = 35/45 (77%), Gaps = 5/45 (11%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEE-----EEEEKEQEEEDQTNEE 94
++E+ +E++++EE++EEEEE+EEE +E+E+++ ED T E+
Sbjct: 156 DDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200
Score = 40.0 bits (93), Expect = 5e-05
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 8/61 (13%)
Query: 47 KRRKRKGEEEEE--------NEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
+RR R EE+ ++++E+E+E++++EE+ EEEEEEE+E + D +EE GG
Sbjct: 134 RRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGG 193
Query: 99 Q 99
+
Sbjct: 194 E 194
Score = 36.6 bits (84), Expect = 0.001
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
KRR+ + EE+ + ++++E+E E++++EE ++EEE++ E
Sbjct: 133 KRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 36.2 bits (83), Expect = 0.001
Identities = 12/47 (25%), Positives = 31/47 (65%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+R+R EE+ + ++++E+++E++++E++ EEE++ EE
Sbjct: 133 KRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 35.8 bits (82), Expect = 0.002
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+E++++EE++EEEEEEEEE + ++E+EE E E+ + V
Sbjct: 160 EDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEV 203
Score = 30.0 bits (67), Expect = 0.17
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEE---EEEEEEEQEEEEEEEKEQEEEDQTN 92
D++ + +EE++ EE EEEEE ++E+EE E E+ E+ E D+T+
Sbjct: 156 DDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDKTD 207
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 42.7 bits (101), Expect = 5e-06
Identities = 24/41 (58%), Positives = 28/41 (68%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
RR+R+ E EEEEEEE EEE+EEEEEEE+ EEE
Sbjct: 293 RRRRRPPPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 40.0 bits (94), Expect = 5e-05
Identities = 26/47 (55%), Positives = 31/47 (65%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
RL ++RR+R E EE EEEEEE EEEE+EEEEEE +EE
Sbjct: 287 RLPLRRRRRRRPPPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 38.5 bits (90), Expect = 1e-04
Identities = 23/41 (56%), Positives = 27/41 (65%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
RR+R+ E EEEEEEEE EE+EEEEEEE+ EE
Sbjct: 292 RRRRRRPPPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEE 332
Score = 38.1 bits (89), Expect = 2e-04
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
RR+R+ E EEEEEEEEE E+EEEEEEE+E+ E++
Sbjct: 291 RRRRRRRPPPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 37.7 bits (88), Expect = 3e-04
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 37 RMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
M+ R D R+R+ + EEEEEEEEE +EEEEEEE+E+
Sbjct: 279 EMIRRFIDRLPLRRRRRRRPPPSPPEPEEEEEEEEEVPEEEEEEEEEEERT 329
Score = 28.5 bits (64), Expect = 0.45
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 66 EEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
E EEE+EEEEE +E+EEE++ E
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFE 331
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 40.3 bits (95), Expect = 4e-05
Identities = 19/54 (35%), Positives = 40/54 (74%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ +K+R+ + +E+++ +++EEEEEEE++++EEE+E+E+EE ++ EE
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468
Score = 38.4 bits (90), Expect = 2e-04
Identities = 24/51 (47%), Positives = 38/51 (74%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
+ ++K K +EEEE EE E++EEE+EEEEE+ EEE+EE+E++++ Q
Sbjct: 427 KKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQA 477
Score = 36.8 bits (86), Expect = 6e-04
Identities = 24/57 (42%), Positives = 43/57 (75%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
+ +E+K +K+K ++ EE EEEE+E++EEE++EEEEE E+E+EEE++ +++
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQAT 478
Score = 35.3 bits (82), Expect = 0.002
Identities = 15/50 (30%), Positives = 36/50 (72%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+K ++ ++ EE ++ ++++ +++E+EEEEE+EK++EE+++ EE
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461
Score = 34.1 bits (79), Expect = 0.005
Identities = 15/55 (27%), Positives = 36/55 (65%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
+K +K + E++ EE ++E++++ +++EEEEEE+++++E++ EE
Sbjct: 407 KATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461
Score = 32.2 bits (74), Expect = 0.026
Identities = 15/52 (28%), Positives = 32/52 (61%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
K+ +K ++ E E + EEE++E++++ +++E+E+EEE + EE
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457
Score = 31.4 bits (72), Expect = 0.053
Identities = 14/51 (27%), Positives = 34/51 (66%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
++ +K K E+ ++ EEE++E++++ +++EEE+E+E+E + E+
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 28.3 bits (64), Expect = 0.62
Identities = 12/48 (25%), Positives = 32/48 (66%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+K + ++ E+ E++ EEE++E++++ ++KE+EEE++ ++
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKK 451
Score = 26.4 bits (59), Expect = 2.5
Identities = 10/50 (20%), Positives = 31/50 (62%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
++ K ++ + ++ EEE++E++++ ++++E+EEE++ +E
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 39.3 bits (92), Expect = 8e-05
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
E+ E ++EEEE+EEEEEE++E+E KE ++++ E+ V
Sbjct: 382 EDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVES 425
Score = 37.0 bits (86), Expect = 6e-04
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
++EEE +E EEEEE+E+E +E ++EE E+++ + E+ G
Sbjct: 388 RDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGNS 434
Score = 36.3 bits (84), Expect = 9e-04
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E ++E EE+EEEEEEE+E+E +E +++E EE+D ++
Sbjct: 384 ANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKY 427
Score = 35.9 bits (83), Expect = 0.002
Identities = 17/53 (32%), Positives = 30/53 (56%)
Query: 40 LRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
L + D R + EE+EE EE E+E+E +E +EE EE+ + + + ++
Sbjct: 379 LEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSD 431
Score = 35.1 bits (81), Expect = 0.002
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
E ++E EE+EEEEEEE+E E +E + EE ++ + E
Sbjct: 384 ANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVES 425
Score = 32.4 bits (74), Expect = 0.020
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 50 KRKGEEEEENEEN------EEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
K+K + +E E++ E E+ E +EEEE+E+E+EEED+
Sbjct: 358 KQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPS 409
Score = 32.4 bits (74), Expect = 0.022
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEE---EEEEEQEEEEEEEKEQEEEDQ 90
L E +R EEEE+ EE EEE+E+E +E + EE EE++ E + ED
Sbjct: 378 ALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDS 430
Score = 28.2 bits (63), Expect = 0.78
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+QK K K E++ + E E+ E+++EEEE++E+EEE+ +E
Sbjct: 358 KQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEG 407
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 38.2 bits (89), Expect = 1e-04
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+EEEE EE +E E+E+ E + E +E+K++E E+
Sbjct: 96 DEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEK 136
Score = 35.9 bits (83), Expect = 7e-04
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
EEEE EE+ +E E+E+ E + E +E++K + + +T +E+
Sbjct: 95 DDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEK 138
Score = 34.3 bits (79), Expect = 0.003
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
++EEE E E +E E+E+ + + E +EK++ E + E+
Sbjct: 93 SSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEK 136
Score = 31.6 bits (72), Expect = 0.026
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
R+ ++EE E EE +E E+E+ E + E +++++ E
Sbjct: 89 RELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKRE 128
Score = 29.0 bits (65), Expect = 0.29
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+EEEE EEE ++ E+E+ + + E + + V
Sbjct: 96 DEEEETEEESTDETEQEDPPETKTESKEKKKREV 129
Score = 27.8 bits (62), Expect = 0.69
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 58 ENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
E +++EEEE EEE E E+E+ E + E + ++R
Sbjct: 90 ELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKR 127
Score = 25.5 bits (56), Expect = 4.9
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
+E E+ + E + E +E+++ + + + EKE+ +
Sbjct: 107 DETEQEDPPETKTESKEKKKREVPKPKTEKEKPKT 141
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 38.4 bits (90), Expect = 2e-04
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 28 RQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEE-EEEEEEEEEEQEEEEEEEKEQ 85
R + +AR R RLA E+ + KR + EE EE E E EE E + E Q
Sbjct: 249 RWLLIAR--R---RLAYERAKAKRAEILAQRAEEEEESSEGAAETIEEPELDLETISAQ 302
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 37.9 bits (88), Expect = 3e-04
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
R EE + + ++ E+E+E E + +EE ++
Sbjct: 538 RNSTEERIDLDADDWTEDEDENEMETDEERKKP 570
Score = 36.0 bits (83), Expect = 0.001
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
N E + + ++ E E+E E E ++E +
Sbjct: 539 NSTEERIDLDADDWTEDEDENEMETDEERKK 569
Score = 34.5 bits (79), Expect = 0.004
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 57 EENEENEEEEEEEEEEEEQEEEEEEEKE 84
EE + + ++ E+E+E + E +EE K+
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKK 569
Score = 34.5 bits (79), Expect = 0.004
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEEEE 80
R E + + ++ E+E+E E E EE ++
Sbjct: 538 RNSTEERIDLDADDWTEDEDENEMETDEERKK 569
Score = 34.5 bits (79), Expect = 0.005
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 62 NEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
+ EE + + ++ E+E+E E E +EE +
Sbjct: 540 STEERIDLDADDWTEDEDENEMETDEERK 568
Score = 33.3 bits (76), Expect = 0.010
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 39 LLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEE 78
L RL + + + + ++ E+E+E E E +E+ ++
Sbjct: 530 LYRLCWSLRNSTEERIDLDADDWTEDEDENEMETDEERKK 569
Score = 32.1 bits (73), Expect = 0.028
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 70 EEEEEQEEEEEEEKEQEEEDQTNEER 95
EE + + ++ E E E E +T+EER
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEER 567
Score = 31.8 bits (72), Expect = 0.038
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 24/82 (29%)
Query: 31 HLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQ--------------- 75
HL R+ L + + R ++ +E+E E E +EE ++
Sbjct: 529 HL---YRLCWSLRNSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQ 585
Query: 76 ------EEEEEEEKEQEEEDQT 91
EEEE + + D +
Sbjct: 586 GKAPKLTEEEEAALKMKMTDTS 607
Score = 30.2 bits (68), Expect = 0.11
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 68 EEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
EE + + ++ E+E E E E ++ G
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKKPG 571
Score = 28.3 bits (63), Expect = 0.59
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 66 EEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
EE + + + E+E+E E E +++ +
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKK 569
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 37.6 bits (87), Expect = 3e-04
Identities = 24/43 (55%), Positives = 31/43 (72%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ EE E EE EEEEEEEEE+E +EEE E+E+E+EE + N
Sbjct: 440 EEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGS 482
Score = 35.7 bits (82), Expect = 0.002
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E EE EE EEEEEEEE+E E+EE E+EE+E+E E E
Sbjct: 443 ESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSE 483
Score = 35.7 bits (82), Expect = 0.002
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
EEE EE EEEEEEE+E EE+E E+EEE+E+ E D +EE + G
Sbjct: 444 SVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEG 488
Score = 35.3 bits (81), Expect = 0.003
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
+E EE E EEEEEEEEEEEE+E+E EEE+ ++EE++ E G
Sbjct: 435 ASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNG 481
Score = 34.9 bits (80), Expect = 0.003
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
Q+ + + EEEE EE EEEEEE+E EEE+ E+EEEE+E E ++ + EE G
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSS 490
Score = 33.7 bits (77), Expect = 0.009
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E + + EEEEE EE EEEE+E EEEE ++EEEEEE E + + E
Sbjct: 438 ESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 33.3 bits (76), Expect = 0.011
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
+ ++ + EEEEE EE EEE+E EEEE E EEEEEE + ++
Sbjct: 438 ESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEE 484
Score = 33.0 bits (75), Expect = 0.013
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
+E + + EEEEE EE E EEEE E+EEE+EE E + +EE + ++E
Sbjct: 442 EESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSE 491
Score = 32.6 bits (74), Expect = 0.023
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E+ + + EEEEE EE +E EEEE E+EE+EEE E + EEE + + E
Sbjct: 442 EESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSE 491
Score = 31.0 bits (70), Expect = 0.077
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
EEEEE E+ EEEE E+EEEE+E E + E+E E + + G +
Sbjct: 453 EEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEE 498
Score = 31.0 bits (70), Expect = 0.080
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+E++ + + EE+E EE E+EEEEEE E EEE + E D EE
Sbjct: 448 EEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEE 498
Score = 29.1 bits (65), Expect = 0.30
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+E++ + + E+E E EE E+EEEEEE E + EEE E E + E
Sbjct: 449 EEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPE 500
Score = 28.7 bits (64), Expect = 0.38
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
R +D K GE + EEEE EEEEE+EEEEEEE+++ EE++ +E
Sbjct: 417 RSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDE 470
Score = 28.7 bits (64), Expect = 0.40
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+E++ + + +E EE E +EEEEEE E + EEE E + + D E
Sbjct: 449 EEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPE 500
Score = 26.0 bits (57), Expect = 4.0
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
++ + +EEEE E + EEE E E + + E+ +E+ ++ N E G
Sbjct: 460 QESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGI 513
Score = 25.3 bits (55), Expect = 7.3
Identities = 21/55 (38%), Positives = 27/55 (49%)
Query: 40 LRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
R + E +E EEEE EEEEEEE+E+EEE+Q +EE
Sbjct: 410 ERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEE 464
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 37.3 bits (87), Expect = 4e-04
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
L + + +R+ E + E E E + ++E+E EE+ +E+ED E
Sbjct: 226 LKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTE 278
Score = 34.2 bits (79), Expect = 0.005
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
K+ E E E EE + E E E + ++E++ EED
Sbjct: 223 TKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDP 264
Score = 33.4 bits (77), Expect = 0.011
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E++ E +E+E EE+ EE+E+ ++ E+ E
Sbjct: 236 EEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEI 285
Score = 31.9 bits (73), Expect = 0.030
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 58 ENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+ EE EEE + E + E + +QE+E T E+
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDP 264
Score = 30.0 bits (68), Expect = 0.14
Identities = 12/55 (21%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEE-EEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ + + KG ++E+ EE+ EE+E+ ++ E+ +K + +++ +EE
Sbjct: 239 TDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Score = 28.8 bits (65), Expect = 0.40
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
E EE EE + E E E + ++E+E +E+ +EE+
Sbjct: 231 ETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEK 271
Score = 26.5 bits (59), Expect = 2.4
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
E+++E + + EE+ ++EE++E+ + EEKE+ E
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEKERIE 681
Score = 26.1 bits (58), Expect = 3.8
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
E+ +E + + EE+ ++EE++EK + EE
Sbjct: 648 EKKKEFKILDYTEEKTKKEEKKEKNKREEK 677
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 36.6 bits (84), Expect = 7e-04
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
E+ K K E E++ E E E+E+E+E E+E E E E+ + ++E R+
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRMS 634
Score = 35.4 bits (81), Expect = 0.002
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
+LA +++ K + E E + EE E E+E+E+E+E E E E E+
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
Score = 34.7 bits (79), Expect = 0.004
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
K K++ E E+ + E++ EE E E+E+E+E E+E+E E +
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERA 621
Score = 34.7 bits (79), Expect = 0.004
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
+KR + + + E E+ EE E E+E+E+E E E E+E E
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 27.3 bits (60), Expect = 1.6
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
++ KR + EE E E+E+E E E E + E + E + +E ++ G
Sbjct: 585 VEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRMSEPQLSG 640
Score = 25.0 bits (54), Expect = 8.9
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEE-KEQEEEDQTNEER 95
+K EE E + E E++ EE E E+E+ KE+E E + ER
Sbjct: 579 KKREEAVEKAKREAEQKAREERER----EKEKEKEREREREREAER 620
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 36.0 bits (84), Expect = 0.001
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 29 QMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
L++ + L LA + EE +E + + EEEEE+EEEEEEE+ EEE
Sbjct: 261 DDILSKAVAQALALAAALADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 34.1 bits (79), Expect = 0.005
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
EE + + + + EEEE+EEEEEEE+E EE+
Sbjct: 286 EELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 31.0 bits (71), Expect = 0.064
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
+++ +EE +E + + EEEEEEE+E+EEE+ + EE G
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAG 324
Score = 30.2 bits (69), Expect = 0.10
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
K +EE +E + + EE+EEEEEEE+E+E +
Sbjct: 281 KDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSE 318
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 36.0 bits (83), Expect = 0.001
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 32 LARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
+ L+ + Q+ + + E+E++ EE +++E+E E E+ E E E + E EED+
Sbjct: 628 ILDVLKADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQ 687
Query: 92 NEE 94
++
Sbjct: 688 EDD 690
Score = 29.5 bits (66), Expect = 0.24
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+E E E++E E E + E+ E++E+E++ + E ++
Sbjct: 663 DECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKA 703
Score = 28.7 bits (64), Expect = 0.46
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
+E+E E E+ E E E + E EE+E+E + E
Sbjct: 661 DEDECEAIEDSESESESDGEDGEEDEQEDDAE 692
Score = 28.3 bits (63), Expect = 0.55
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 36 LRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
L + D K + K ++ E EE+E++ EE ++ E+E E ++ E E +++ E
Sbjct: 622 NEGLQLILDVLKADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGE 680
Score = 28.3 bits (63), Expect = 0.65
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+E + + +++E+ E E+ E E E + E+ EE+E+E + E +
Sbjct: 649 EEDEDDLEETDDDEDECEAIEDSESESESDG-EDGEEDEQEDDAEANEGVVPI 700
Score = 26.0 bits (57), Expect = 3.5
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
D++ + + E E+E + E+ EE+E+E++ E E + +
Sbjct: 660 DDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRR 706
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 35.7 bits (83), Expect = 0.002
Identities = 16/54 (29%), Positives = 35/54 (64%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
L DE + + EE+++++EE +EE+EE + E++E+++ + +++D ER
Sbjct: 110 LQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRER 163
Score = 35.3 bits (82), Expect = 0.002
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
EE+++++ E +EE+EE + +++E++++ + +++ T E
Sbjct: 124 EEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERS 164
Score = 34.2 bits (79), Expect = 0.004
Identities = 9/47 (19%), Positives = 31/47 (65%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
R + +++++ E +EE+EE + E++++++++++ + + + ER
Sbjct: 121 RDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLER 167
Score = 31.9 bits (73), Expect = 0.029
Identities = 9/43 (20%), Positives = 28/43 (65%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
++ + E+++++EE +EE EE + E +++++D +++ +
Sbjct: 116 YDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDI 158
Score = 31.1 bits (71), Expect = 0.059
Identities = 10/51 (19%), Positives = 34/51 (66%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+E+ + + + ++ + E +++++EE +EE++E + E+ E +++D +++
Sbjct: 107 EEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDD 157
Score = 25.7 bits (57), Expect = 4.2
Identities = 7/43 (16%), Positives = 24/43 (55%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
EE +E +E + E++E++++ +++++ + ++ R
Sbjct: 130 DEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRR 172
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 35.5 bits (82), Expect = 0.002
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ R KR+ + + E +E+E+EEEE+ +E EEEE E EE+ +
Sbjct: 352 SKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSR 401
Score = 33.6 bits (77), Expect = 0.007
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
EE +E+E+ EEE+ +E EEE+ E+ EEE Q ED ++E
Sbjct: 368 EEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESS 409
Score = 33.2 bits (76), Expect = 0.011
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
+E+E+EE E+ +E EEEE ++ EEE + +E+ + VG
Sbjct: 370 VDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGS 414
Score = 32.0 bits (73), Expect = 0.030
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+EEEE +E EEEE E+ EE+ + E+ E +
Sbjct: 375 DEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSD 415
Score = 29.7 bits (67), Expect = 0.21
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
++++ +R E EEE E+ EEE + E+ E + E E
Sbjct: 374 EDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429
Score = 28.9 bits (65), Expect = 0.35
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
DE + +++ +E EE E + EEE + E+ E + + E + ++E
Sbjct: 373 DEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKES 424
Score = 28.2 bits (63), Expect = 0.64
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+++ + + +E E EE E+ EEE + E E + + ++
Sbjct: 372 EDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKE 423
Score = 27.4 bits (61), Expect = 1.1
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
DE + + + +E EE E+ EEE + ++ E + + ++ ++
Sbjct: 371 DEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADK 422
Score = 26.6 bits (59), Expect = 2.0
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
K R +E + ++ + + EE E+E+EEE+++ +E + E
Sbjct: 343 KLRNPSTKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEG 390
Score = 26.2 bits (58), Expect = 2.7
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
+ + EE +E+E EEEE+ E EEE+ + E G Q
Sbjct: 363 DPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQ 399
Score = 25.5 bits (56), Expect = 5.0
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
DE + + + EEE ++ E+ E + + E + +KE + +
Sbjct: 383 DEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 35.0 bits (81), Expect = 0.002
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+ E E E++ + E+EE++ + ED+ EE V
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIV 301
Score = 30.8 bits (70), Expect = 0.080
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
+ EE E++++ ++EEE+++ E +
Sbjct: 263 QPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALE 298
Score = 29.2 bits (66), Expect = 0.28
Identities = 6/36 (16%), Positives = 13/36 (36%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
+ EEE E+ + ED+ ++ +
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDR 295
Score = 29.2 bits (66), Expect = 0.33
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
EEE E++++ E EEE+++ +++ E+
Sbjct: 264 PPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 27.7 bits (62), Expect = 1.1
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
+ EEE E++ + E+++ ++
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDR 295
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 34.8 bits (81), Expect = 0.003
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
+ E E EEEE EEEEEEE+EEE EE +
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEA 257
Score = 34.4 bits (80), Expect = 0.004
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
G + E EEEEEE EEEEE+EEEEE E+ + E
Sbjct: 224 GRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 34.4 bits (80), Expect = 0.004
Identities = 22/34 (64%), Positives = 24/34 (70%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
R+G E EE EEE EEEEEEEE+EE EE E E
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 33.6 bits (78), Expect = 0.006
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEE 82
R+ + E E EE E EEEEEEEEEE+ EE E E
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 32.8 bits (76), Expect = 0.012
Identities = 22/34 (64%), Positives = 23/34 (67%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEE 81
R+ R E EE EE EEEEEEEEEEE EE E E
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 32.4 bits (75), Expect = 0.018
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
+ E EEEEEE EEEE+EEEEEE +E E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 31.7 bits (73), Expect = 0.040
Identities = 21/33 (63%), Positives = 21/33 (63%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEE 78
Q R EEEEE E EEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 30.9 bits (71), Expect = 0.072
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 41 RLAD---EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEE 80
++AD E ++ + EEE EE EEEEEEEEEEE +E E E
Sbjct: 216 KIADAILEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 30.5 bits (70), Expect = 0.076
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 58 ENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
E + E EEEEEE EEEEEEE+E+E E+ E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 30.5 bits (70), Expect = 0.078
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 57 EENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
E + E EEEEEE +EEEEEEE+E+ EE +
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 30.1 bits (69), Expect = 0.12
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 62 NEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E EEEEE+ EEEEEE+E+EE ++ E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 29.4 bits (67), Expect = 0.24
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E + E EEEE+E EEEEE+E+EEE + E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEA 257
Score = 26.7 bits (60), Expect = 1.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 65 EEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+ E EE+EEE EEE+E+EEE++ E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAE 256
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 34.8 bits (80), Expect = 0.003
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+K ++E + E E + +EE+ +QEE E+++KEQ +ED+ ++
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQK 429
Score = 32.5 bits (74), Expect = 0.023
Identities = 14/46 (30%), Positives = 31/46 (67%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
+ + + EE E + EE+ ++EE E++Q+E+ +E+KE+ ++D+
Sbjct: 386 GEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDE 431
Score = 29.4 bits (66), Expect = 0.22
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 36 LRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEE-EKEQEEEDQ 90
L+ + E K EE E + E+ ++EE E++++E+ +E+ EK Q++E +
Sbjct: 378 LQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
Score = 28.2 bits (63), Expect = 0.54
Identities = 13/52 (25%), Positives = 32/52 (61%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
+K + K E + E + +EE+ ++EE E++++E+ ++++E + +ER
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 27.1 bits (60), Expect = 1.6
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
++ + E ++E + EE + + +EE+ +QEE ++ +E+
Sbjct: 379 QDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQ 419
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 34.6 bits (80), Expect = 0.003
Identities = 17/46 (36%), Positives = 32/46 (69%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
DE+ + + EEE EE++ E E+E+EE+++EEEEE+ ++ ++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 34.3 bits (79), Expect = 0.005
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
E+ E EE E++ E E+E+E++E+EEEE++ +E D+
Sbjct: 284 EKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 32.7 bits (75), Expect = 0.015
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
G +EE+ EE E+ EEEEEE++ E E+E++E E+E++ ++ G +
Sbjct: 273 GGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 31.9 bits (73), Expect = 0.030
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
+++ + E+ EE EE ++ E E+E+EE E+EEEEE + E +
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 27.7 bits (62), Expect = 0.83
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
K KGE E + E+ EE E+ EE+EEE++ + ++E+++ +E
Sbjct: 264 KVKGEPEVVGGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDE 308
Score = 26.5 bits (59), Expect = 2.3
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEE 79
L ++ + + + + E +E+EE+E+EEEEE++ E ++
Sbjct: 282 LLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 25.4 bits (56), Expect = 5.3
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 36 LRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQE 76
L LL A+E++ E E+E+EE+E+EEEEE+++E +
Sbjct: 279 LEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 34.7 bits (80), Expect = 0.004
Identities = 18/30 (60%), Positives = 25/30 (83%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
N E ++EEEE+E+EEE+EEEEE E+ + EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 33.9 bits (78), Expect = 0.007
Identities = 19/29 (65%), Positives = 24/29 (82%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
E+ +EEEE+E+EEEE+EEEE EE E EE
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 33.1 bits (76), Expect = 0.011
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
E+++EE E+E+EEEEEEEE+ EE E E+
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 33.1 bits (76), Expect = 0.012
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEE 80
K EEEE+ +E EEEEEEE EE E EE
Sbjct: 347 KDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 33.1 bits (76), Expect = 0.012
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
E+++E EE E+EEEEEEEEE +E E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 32.0 bits (73), Expect = 0.028
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
E ++ EEE+E+EEEEEE+EE EE E E+
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 32.0 bits (73), Expect = 0.032
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 62 NEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
N E+++EEEE+E++EEEEEEE+ +E E +
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPL 376
Score = 30.8 bits (70), Expect = 0.073
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEE 79
++ EEE+E+EE EEEEEE EE E +E
Sbjct: 346 QKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 30.0 bits (68), Expect = 0.15
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E E E EEEEEEE E ++E+E EEE+E+E E+ EE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEE 203
Score = 29.3 bits (66), Expect = 0.25
Identities = 21/35 (60%), Positives = 25/35 (71%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
EEEE EE E +EE+E EE+EEEE EE +EEE
Sbjct: 170 GEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 27.7 bits (62), Expect = 0.84
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEE 73
EQK + + E+EEE EE EE EE E EE
Sbjct: 344 PEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 27.3 bits (61), Expect = 1.5
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
E E E EEEEEE E +E++E EEEE+E+ EE EE G
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEEGTG 207
Score = 26.9 bits (60), Expect = 1.5
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 62 NEEEEEEEEEEEEQEEEEEEEKEQEEED 89
EEEEEEEEEEE E +E E+ + E
Sbjct: 286 QLEEEEEEEEEEEPAERDELEENPDFEG 313
Score = 26.6 bits (59), Expect = 2.4
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
E E EE EEEE E +EE++ EEEEEE+ +E
Sbjct: 165 VELREGEEEEEEEEVGEADEEDEGEEEEEEEPEE 198
Score = 26.2 bits (58), Expect = 3.1
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
EEEEE EE EE E +E EE + E E +E +
Sbjct: 288 EEEEEEEEEEEPAERDELEENPDFEGLEVRELAD 321
Score = 26.2 bits (58), Expect = 3.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
EEE EE EEEE E +E E+ + E + +E D +
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDN 325
Score = 26.2 bits (58), Expect = 3.5
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
E EEEEEEEEE E++E EE + E
Sbjct: 286 QLEEEEEEEEEEEPAERDELEENPDFEGLE 315
Score = 26.2 bits (58), Expect = 3.7
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 67 EEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
E+++EE+E+E+EEE+E+EEE + E G
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 25.4 bits (56), Expect = 6.9
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEE 82
EEEE EE EEE E +E EE + E E
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLE 315
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP),
alpha subunit. The alpha-subunit of the TRAP complex
(TRAP alpha) is a single-spanning membrane protein of
the endoplasmic reticulum (ER) which is found in
proximity of nascent polypeptide chains translocating
across the membrane.
Length = 281
Score = 34.0 bits (78), Expect = 0.005
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
++ E+EE E++ +E+EE+E EE+E + EEE+ E
Sbjct: 32 QDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 31.7 bits (72), Expect = 0.036
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 37 RMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
+ A + + ++ + +E +E EE+E E EEEE+EE E
Sbjct: 25 KGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 31.3 bits (71), Expect = 0.051
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
E+EE ++ +E+EE+E E++E E E+E++EE +
Sbjct: 36 EDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEV 73
Score = 29.0 bits (65), Expect = 0.31
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
+E+E +E EE+E E EE+E+EE E K + D T
Sbjct: 45 VDEDEEDEAVVEEDENELTEEEEDEEGEVKASPDADTT 82
Score = 29.0 bits (65), Expect = 0.36
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
++ +E E++ +E+EE++ EE+E E EE++ E V
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVK 74
Score = 27.4 bits (61), Expect = 1.1
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
K ++ E+EE E++ +E+E++E EE E E ++ +E
Sbjct: 25 KGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDE 69
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This
is a family of uncharacterized proteins.
Length = 449
Score = 33.8 bits (77), Expect = 0.006
Identities = 16/54 (29%), Positives = 35/54 (64%)
Query: 36 LRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
L + + E RK E EEE E E+++EE++++++ E+E++++ + +E+D
Sbjct: 26 LTLNDTMKKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDD 79
Score = 27.3 bits (60), Expect = 1.6
Identities = 8/49 (16%), Positives = 36/49 (73%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
+L E + + E+++E +++++++E+E+++++ ++E++E+++ ++
Sbjct: 40 KLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDST 88
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 33.6 bits (77), Expect = 0.008
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEEEE 80
R E EE E E EE+EE+ +E+++
Sbjct: 575 RANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.5 bits (69), Expect = 0.12
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEE 77
D + EE E E EE+EE+++E ++
Sbjct: 573 DPRANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.8 bits (67), Expect = 0.20
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEE 82
R E E E EE+E++++E+++
Sbjct: 575 RANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.4 bits (66), Expect = 0.26
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
N E EE E E EE+EE++ E ++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.0 bits (65), Expect = 0.30
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
N E EE E E EE+E++ +E+D
Sbjct: 575 RANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 28.6 bits (64), Expect = 0.48
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEK 83
E +EE E E EE++E+++E++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 28.2 bits (63), Expect = 0.75
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 58 ENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
NE +EE E E +E+EE+++++ +
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 27.5 bits (61), Expect = 1.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 57 EENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
N EE E E EE+EE+ +++++
Sbjct: 575 RANNNEASEETETITVPENNEEDEEDDDEDDD 606
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 33.6 bits (77), Expect = 0.008
Identities = 19/45 (42%), Positives = 33/45 (73%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
K K E E+ +E +E++EEEEEEEE+E+E+ ++ + +++D N E
Sbjct: 159 KLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDDDYNAE 203
Score = 32.8 bits (75), Expect = 0.015
Identities = 16/43 (37%), Positives = 36/43 (83%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
+++ ++ E E+ +EE+E++EEEEEEEEE++E+ +++ + +++D
Sbjct: 157 EKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDDD 199
Score = 30.5 bits (69), Expect = 0.079
Identities = 17/46 (36%), Positives = 32/46 (69%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
++K + + +E E+ +EE+E++EEEE+EEEEE+E +++D
Sbjct: 149 IDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDD 194
Score = 30.5 bits (69), Expect = 0.096
Identities = 16/48 (33%), Positives = 32/48 (66%)
Query: 39 LLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
+L+ +K+ K E+ + E+ ++EEEEEEEEEE E+ ++++ + +
Sbjct: 150 DEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 30.1 bits (68), Expect = 0.13
Identities = 21/78 (26%), Positives = 45/78 (57%)
Query: 21 GRGELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEE 80
G + + +++ L++F R + +E++ K E+ + E E+ +EE+E+ EEEEE
Sbjct: 121 GINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEE 180
Query: 81 EEKEQEEEDQTNEERVGG 98
EE+E++E+ +++
Sbjct: 181 EEEEEDEDFDDDDDDDDD 198
>gnl|CDD|222927 PHA02774, PHA02774, E1; Provisional.
Length = 613
Score = 33.3 bits (77), Expect = 0.010
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 40 LRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+ L+ +K ++R EE++ N EEE + EE+ E E E
Sbjct: 99 ISLSPRKKAKRRLFEEQDSGLGNSLEEESTDVVEEEGVESSGGGEGGSETGQGGGN 154
Score = 26.4 bits (59), Expect = 2.8
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
+K+ KR+ EE+++ EEE + E+E E + + G
Sbjct: 104 RKKAKRRLFEEQDSGLGNSLEEESTDVVEEEGVESSGGGEGGSETGQGGGNG 155
Score = 24.9 bits (55), Expect = 8.5
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
KG + EE E E E + E+E E+ + +
Sbjct: 5 KGTDPEEGGSGWFLVEAEAECSDGEDELEDLFDTGSDI 42
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 33.0 bits (76), Expect = 0.012
Identities = 19/53 (35%), Positives = 36/53 (67%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
DE++ +E+EE+++++ EEEEE+ + EEE+EE+++ ++ED EE
Sbjct: 320 EEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEE 372
Score = 31.9 bits (73), Expect = 0.030
Identities = 17/42 (40%), Positives = 32/42 (76%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E+EE+++++ EEEEE+ + ++EE+EE+E +E+D+ EE
Sbjct: 332 DEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEE 373
Score = 31.9 bits (73), Expect = 0.031
Identities = 14/40 (35%), Positives = 31/40 (77%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
++ EE EE+ + +EEE+EE+++ ++E+++E+EEE++
Sbjct: 339 DDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 31.9 bits (73), Expect = 0.032
Identities = 17/43 (39%), Positives = 33/43 (76%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+GEE+EE EE+ ++E+EE++++ EEEEE+ + +E++ E+
Sbjct: 318 QGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEED 360
Score = 31.1 bits (71), Expect = 0.070
Identities = 13/42 (30%), Positives = 33/42 (78%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+++++ EE EE+ + +EEE++E+E+ ++++ EEE++ +E+
Sbjct: 337 DDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 30.4 bits (69), Expect = 0.10
Identities = 16/41 (39%), Positives = 33/41 (80%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
EEEE + + +EEE+EE+E+ ++E++EE+E+EE+++ ++
Sbjct: 342 LEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKK 382
Score = 30.0 bits (68), Expect = 0.14
Identities = 12/38 (31%), Positives = 30/38 (78%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
+ + +EE +EE+E+ ++E+++EEEEEE+++++++
Sbjct: 348 DVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAE 385
Score = 30.0 bits (68), Expect = 0.15
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
G + E +E EEE+ ++E+EE ++++ EE+E++ + EE
Sbjct: 315 GLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEE 356
Score = 30.0 bits (68), Expect = 0.18
Identities = 15/42 (35%), Positives = 30/42 (71%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E+++++ E EEE+ + +EEE EE+E+ + E +EE++ E+
Sbjct: 335 EEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEK 376
Score = 29.6 bits (67), Expect = 0.21
Identities = 17/43 (39%), Positives = 31/43 (72%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
E+ + ++E E+EE+E+ ++E+ EEEEEEEKE++++ R
Sbjct: 346 EEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTR 388
Score = 29.6 bits (67), Expect = 0.25
Identities = 15/42 (35%), Positives = 32/42 (76%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
EE+ + + EE+EE+E+ ++E +EEEEEE++++++ ++ E
Sbjct: 345 EEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAES 386
Score = 29.2 bits (66), Expect = 0.29
Identities = 14/45 (31%), Positives = 34/45 (75%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+ EE+++++ EEEE+ + +EE++EE+E+ ++++E++ EE+
Sbjct: 333 EDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKE 377
Score = 29.2 bits (66), Expect = 0.30
Identities = 15/41 (36%), Positives = 31/41 (75%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ +E E+ E+E+ ++E++EE+EEEE+E+K+++ + T E
Sbjct: 350 DLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 29.2 bits (66), Expect = 0.33
Identities = 15/40 (37%), Positives = 29/40 (72%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
D+ + + + + EE+EE+E+ ++E++E+EEEEE+EK
Sbjct: 339 DDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 28.8 bits (65), Expect = 0.35
Identities = 17/45 (37%), Positives = 35/45 (77%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+ EEE+ + +EEE+EE+E+ +++++EEEEE+E+E++ + + E
Sbjct: 343 EEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAEST 387
Score = 28.4 bits (64), Expect = 0.51
Identities = 13/51 (25%), Positives = 36/51 (70%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ + + EEE+ ++ +EE+++++ EEE+E+ + ++E++EED+ +++
Sbjct: 315 GLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDD 365
Score = 25.7 bits (57), Expect = 4.2
Identities = 12/41 (29%), Positives = 28/41 (68%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
++++N + EE+EEEEE+ ++E+EE + ++ ++ E+
Sbjct: 308 PDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEED 348
Score = 25.7 bits (57), Expect = 4.6
Identities = 18/53 (33%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 45 EQKRRKR-KGEEEEENEENEEEEEEEEEEEEQEEEEEEEK--EQEEEDQTNEE 94
E +R +R +GEEE++ EE + +E ++ ++E E ++++ Q EED+ EE
Sbjct: 275 EAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEE 327
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 32.7 bits (75), Expect = 0.012
Identities = 16/32 (50%), Positives = 28/32 (87%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
EE+E++++EE+EEEE++EE+ +E+E EE+E
Sbjct: 108 ASEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 31.5 bits (72), Expect = 0.028
Identities = 14/31 (45%), Positives = 26/31 (83%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
E+E +++E +EEEE++EE+++++E EEEE
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 31.1 bits (71), Expect = 0.048
Identities = 14/31 (45%), Positives = 26/31 (83%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
EE+ +++EE+EEEE++EE ++E+E E+E+
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 30.4 bits (69), Expect = 0.075
Identities = 15/30 (50%), Positives = 26/30 (86%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEE 81
+ +E +++EE+EEEE++EE+++E E EEEE
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 30.4 bits (69), Expect = 0.077
Identities = 16/29 (55%), Positives = 25/29 (86%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
EE+E +++EE+EEEE +EE+++E E EEE
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEE 138
Score = 30.4 bits (69), Expect = 0.083
Identities = 14/31 (45%), Positives = 28/31 (90%)
Query: 57 EENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
E +E++++EE+EEEE+++E+++E+E E+EE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 30.0 bits (68), Expect = 0.10
Identities = 13/31 (41%), Positives = 25/31 (80%)
Query: 58 ENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
E+ +++EE+EEEE+ EE+++E++ +EEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 29.6 bits (67), Expect = 0.13
Identities = 14/31 (45%), Positives = 28/31 (90%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
EE+E +++EE+EEEE++E++++E+E +E+E
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 29.6 bits (67), Expect = 0.14
Identities = 11/33 (33%), Positives = 28/33 (84%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
E +E +++EE+EEE+++EE++++++ EE+++
Sbjct: 108 ASEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 28.8 bits (65), Expect = 0.27
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
+++E +E EE++EE+++E+E EEEE K+
Sbjct: 114 SDDDEEDEEEEDDEEDDDEDESEEEESPVKK 144
Score = 27.7 bits (62), Expect = 0.81
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 62 NEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
EE+E +++EE++EEE++EE + E+E + E
Sbjct: 108 ASEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 27.3 bits (61), Expect = 0.88
Identities = 12/32 (37%), Positives = 25/32 (78%)
Query: 61 ENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
E+E +++EE+EE+E++EE++ E E E++ +
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 27.3 bits (61), Expect = 1.1
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
EE+E +++EE EEEE++E++ +E++ EE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 32.7 bits (75), Expect = 0.013
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ EE E+ E E E+ E E+ +E N E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 27.3 bits (61), Expect = 1.2
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
EE EE+EE + E+ E + EE V
Sbjct: 207 PEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAA 243
Score = 27.3 bits (61), Expect = 1.3
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
EE+EE E+ + EE EE + N
Sbjct: 211 EEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNEWEN 249
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 32.9 bits (75), Expect = 0.013
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 37 RMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
R L +LA E+ R+R+ EE+ EE + E + + + E E+ EK Q
Sbjct: 256 RELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQN 305
Score = 27.5 bits (61), Expect = 1.3
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
E+KRR+ + +EE E + EE+ EEE+ E + + + E + E++
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKL 303
Score = 26.4 bits (58), Expect = 2.9
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 9/63 (14%)
Query: 46 QKRRKRKGEEEEEN---------EENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
QKR ++ ++E++ E+ +EE + + E +E E + E
Sbjct: 24 QKRIQQNNGDKEDSSTSTSSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIEVE 83
Query: 97 GGQ 99
Q
Sbjct: 84 QNQ 86
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 33.1 bits (75), Expect = 0.014
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
R + +EE +E ++++ + E E E E + + E
Sbjct: 51 RSCQGQEEPDEKTQDQQSLSDVERAEPEVEASRGRGE 87
Score = 31.2 bits (70), Expect = 0.058
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEE 80
R + EE +E ++++ + E E + E
Sbjct: 51 RSCQGQEEPDEKTQDQQSLSDVERAEPEVEASR 83
Score = 30.0 bits (67), Expect = 0.15
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
R +G+EE + + +++ + E E E E +
Sbjct: 51 RSCQGQEEPDEKTQDQQSLSDVERAEPEVEASRGR 85
Score = 27.3 bits (60), Expect = 1.5
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEE 88
+EE +E+ +++Q + E E E E
Sbjct: 55 GQEEPDEKTQDQQSLSDVERAEPEVE 80
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 32.6 bits (75), Expect = 0.014
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 26 SARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
S +Q HLA LL L R + + + +E E +E E + +E E E +
Sbjct: 48 SIKQ-HLAELAADLLELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 32.9 bits (76), Expect = 0.016
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 35 FLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK-EQEEEDQTNE 93
LR LR ++ + EE E+EE E E +EE EEEK E+E + +
Sbjct: 457 VLRPRLRPLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLL 516
Query: 94 ERV 96
+R+
Sbjct: 517 KRL 519
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 32.8 bits (75), Expect = 0.016
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
++++ + +E+EE+EE EEE+EE +E ++E EE+ + E++ TN
Sbjct: 76 EDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 32.4 bits (74), Expect = 0.017
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
E++ + E+ +EE EEE EEE++E +E EKE EE+ ++N E+
Sbjct: 79 EDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKE 121
Score = 31.6 bits (72), Expect = 0.031
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
ADEQ+ +K +E E EE +EEE+E E++E++ + EKE EE ++ NEE
Sbjct: 46 ADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEE 97
Score = 31.2 bits (71), Expect = 0.046
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
E + EEE+E +E++E++ + E+E EE EEE +E++EE E+
Sbjct: 57 QETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109
Score = 30.9 bits (70), Expect = 0.066
Identities = 17/52 (32%), Positives = 35/52 (67%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
D++ + +EEE+ N E++E++ + E+++EE EEE E+E+E+ ++E
Sbjct: 55 DDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDEN 106
Score = 30.5 bits (69), Expect = 0.097
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
E + K + +E +E+ E++ + E+E+EE EEE EEE E+ ++ E
Sbjct: 61 EIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETE 111
Score = 30.5 bits (69), Expect = 0.10
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
+E+K ++E++ + +E+EE EEE EE++EE +E E+E E++T
Sbjct: 67 EEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTES 116
Score = 29.7 bits (67), Expect = 0.18
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ + E +EE +E E++E++ + ++E+EE E+E EEED+ + +
Sbjct: 53 KSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSD 104
Score = 28.5 bits (64), Expect = 0.38
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+D+ +++ ++ ++ E E EE +EEE+E E++E+K E++ E
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEE 93
Score = 27.4 bits (61), Expect = 1.1
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
D+ K E EEENEE +EE +E E+E +E+ E ++
Sbjct: 79 EDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEK 120
Score = 26.2 bits (58), Expect = 2.8
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
DE+ + + E+EE ++ENE+E EE+ E ++E + +QT
Sbjct: 88 DEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPSWKPVGTEQTGP 137
Score = 24.7 bits (54), Expect = 9.4
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ +E+E + +++E E EE +E+E+E +++E++ +E
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKE 87
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 32.5 bits (74), Expect = 0.017
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+K++K K E E E + EE EE +++ + E + + + +E+ +
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVI 118
Score = 32.1 bits (73), Expect = 0.022
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
K+ K+K +E+EE E EE + EE E+ +++ + + + ++ E
Sbjct: 65 KKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEV 112
Score = 30.2 bits (68), Expect = 0.11
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
+K +K+K E+EE E EE + EE EE +++ + E + +
Sbjct: 65 KKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQ 106
Score = 28.2 bits (63), Expect = 0.51
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQE-EEEEEEKEQEEEDQTNEERV 96
+ ++K+K +EE EE + EE EE + + E K Q + N E V
Sbjct: 66 KTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDV 117
Score = 27.9 bits (62), Expect = 0.75
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+K RK + ++ ++ ++E+EE E +E + EE E+ ++ E
Sbjct: 54 KKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYEL 102
Score = 27.1 bits (60), Expect = 1.3
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+++K + +++ +E EE E EE EE EE ++ + + +
Sbjct: 59 RKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQ 106
Score = 27.1 bits (60), Expect = 1.5
Identities = 10/49 (20%), Positives = 27/49 (55%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+K+ + ++ + + +++E+EE E EE + E+ +E + + + E
Sbjct: 53 KKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYE 101
Score = 25.9 bits (57), Expect = 3.4
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
K+ ++++E EE E EE + E+ EE +++ + E N
Sbjct: 65 KKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAA 110
Score = 25.2 bits (55), Expect = 6.7
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+++ + EE ++EENEE +++ + E + + E E+ ++ ++
Sbjct: 74 KEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVIDLSDLKL 125
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 32.8 bits (75), Expect = 0.018
Identities = 19/41 (46%), Positives = 32/41 (78%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E+E E E +EEEEEE+EE+++EEE+ +KE+E +++ +E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKE 68
Score = 32.4 bits (74), Expect = 0.025
Identities = 19/43 (44%), Positives = 33/43 (76%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
EEEEE EE +EEEE+ ++EE+ +EEEE++E++++ + +E
Sbjct: 39 EEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETT 81
Score = 32.0 bits (73), Expect = 0.026
Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
K +++ +EEE EE EE++EEEE+ ++EEE +EE+E+EE
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEE 69
Score = 32.0 bits (73), Expect = 0.031
Identities = 21/57 (36%), Positives = 40/57 (70%)
Query: 35 FLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
F+ + L E++ K +EEEE E+ E++EEEE+ +++EE +EEE+++E++ +T
Sbjct: 18 FINYPIYLWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKT 74
Score = 30.5 bits (69), Expect = 0.12
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
K +EE EE +EE++EEEE+ +EEE +E+E++EE + ++V
Sbjct: 33 KEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKV 77
Score = 28.6 bits (64), Expect = 0.43
Identities = 18/42 (42%), Positives = 33/42 (78%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
E E+E + EEEEE+EE++EE+E+ ++E+E +EE++ E++
Sbjct: 30 EVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKK 71
Score = 28.2 bits (63), Expect = 0.70
Identities = 16/43 (37%), Positives = 31/43 (72%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ EE++E EE ++EEE +EEE++EE++++ ++ +E T E
Sbjct: 43 EKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWE 85
Score = 28.2 bits (63), Expect = 0.75
Identities = 18/47 (38%), Positives = 34/47 (72%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
+E++ ++ K EEEE+ + EEE +EEEE+EE++++ ++ KE E +
Sbjct: 39 EEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWE 85
Score = 27.4 bits (61), Expect = 1.3
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ K E++EE E+ ++EEE +EEEE+EE++++ K+ +E E
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
Score = 26.3 bits (58), Expect = 2.8
Identities = 15/50 (30%), Positives = 36/50 (72%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
+E+++ ++K EEE+ ++ EE +EEEE+EE++++ ++ ++ E + N+
Sbjct: 40 EEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNK 89
Score = 25.5 bits (56), Expect = 5.8
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
E+E E+E +E+EEEE+EEK++EEE T++E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEE 60
Score = 25.5 bits (56), Expect = 6.6
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
E+E E+E +EE+EEE+EE+KE+EE+ EE V
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEV 61
Score = 25.1 bits (55), Expect = 7.0
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
+E+ E EE+EE E E E EE+ E+ + EE D
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEEVD 529
Score = 24.7 bits (54), Expect = 9.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+E+EE EEE+E+ E E E +E+ + + E V
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEEV 528
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 32.7 bits (75), Expect = 0.019
Identities = 10/40 (25%), Positives = 27/40 (67%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEE 82
+ RR RK + + +E++++ E ++ E+E+ E++E+++
Sbjct: 1349 SSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 27.3 bits (61), Expect = 1.5
Identities = 7/38 (18%), Positives = 25/38 (65%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEE 78
RL +++K E++++ ++ E+E++E++++++
Sbjct: 1351 RLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 32.7 bits (74), Expect = 0.020
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
GEE EE + N+ E + E EEE EEEE E + E
Sbjct: 81 EAGEEAEEED-NDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 30.8 bits (69), Expect = 0.088
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 18/83 (21%)
Query: 32 LARFLRMLLRLADEQKRRKR----KGEEEEENEENE--------------EEEEEEEEEE 73
L +LR A Q+RR R G + EN E E EE EEE+ +
Sbjct: 34 LPPWLRKEKACALRQQRRHRLQRQHGVIDGENSETERPRDLTAALFAEAGEEAEEEDNDR 93
Query: 74 EQEEEEEEEKEQEEEDQTNEERV 96
E + E EE+++EEE + + V
Sbjct: 94 ECPDTEAEEEDEEEEIEAPDPEV 116
>gnl|CDD|227391 COG5058, LAG1, Protein transporter of the TRAM (translocating
chain-associating membrane) superfamily, longevity
assurance factor [Intracellular trafficking and
secretion].
Length = 395
Score = 32.5 bits (74), Expect = 0.023
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 25 LSARQ-MHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEE 80
L A Q +++ +++R+A + E E ++E +++E EEE + E E++ +
Sbjct: 345 LQALQLVNIYWLF-LIVRVA-----YRVIWEGELKDERSDDESEEESDLESSEDKND 395
Score = 26.7 bits (59), Expect = 2.2
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 61 ENEEEEEEEEEEEEQEEEEEEEKEQEE 87
E E ++E ++E E+E + E +++ +
Sbjct: 369 EGELKDERSDDESEEESDLESSEDKND 395
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 32.5 bits (74), Expect = 0.023
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 8/90 (8%)
Query: 5 LLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEE 64
L V +A A GR E++ + LA L +L R + E +
Sbjct: 228 LFAVRAAKAH--AALHGRTEVTEEDLKLAVELVLLPRATRLPEP------EPQPPPPPPP 279
Query: 65 EEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E E EEE E ++ + + EE DQ EE
Sbjct: 280 PEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD)
repeat [General function prediction only].
Length = 561
Score = 32.2 bits (73), Expect = 0.025
Identities = 19/47 (40%), Positives = 24/47 (51%)
Query: 34 RFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEE 80
R L LR + K R R GEE E + N+ E EEE E +E E+
Sbjct: 515 RSLLKKLRAIEALKERMRSGEELEVIQVNKIETEEEVLSELKELVED 561
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 31.8 bits (73), Expect = 0.030
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 40 LRLADEQKRRKRKGEEEEE--------NEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
L+L+ E R+ K EEEE E EE +E++EE++++E E + K EE +
Sbjct: 251 LKLSPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRK 310
Query: 92 NEER 95
EE+
Sbjct: 311 LEEK 314
Score = 31.5 bits (72), Expect = 0.038
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 11 AMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEE 70
+ LY D +LS + R ++ + + +EE E+ EE+++EE
Sbjct: 239 NLVLYLVDKLANLKLSPEVLRKVDKTR--EEEEEKILKAAEEERQEEAQEKKEEKKKEER 296
Query: 71 EEEEQEEEEEEEKEQEEEDQTNEER 95
E + + EE+++ EE+++ + R
Sbjct: 297 EAKLAKLSPEEQRKLEEKERKKQAR 321
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 31.8 bits (72), Expect = 0.035
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 60 EENEEEEEEEEEEEEQEEEEE 80
+ E EE+EEEEEE+EEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 31.8 bits (72), Expect = 0.036
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 53 GEEEEENEENEEEEEEEEEEE 73
G + E E+ EEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 31.1 bits (70), Expect = 0.058
Identities = 15/21 (71%), Positives = 18/21 (85%)
Query: 54 EEEEENEENEEEEEEEEEEEE 74
+ E+EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 30.7 bits (69), Expect = 0.075
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 63 EEEEEEEEEEEEQEEEEEEE 82
+ E EE+EEEE+EEEEEEE
Sbjct: 224 SDSESEEDEEEEEEEEEEEE 243
Score = 29.9 bits (67), Expect = 0.15
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 57 EENEENEEEEEEEEEEEEQEE 77
+ E+EE+EEEEEEEEE+EE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.9 bits (67), Expect = 0.16
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 61 ENEEEEEEEEEEEEQEEEEEE 81
++ E EE+EEEEE+EEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.9 bits (67), Expect = 0.18
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 56 EEENEENEEEEEEEEEEEEQE 76
++E E+EEEEEEEEEE+E
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.1 bits (65), Expect = 0.28
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 64 EEEEEEEEEEEQEEEEEEEKE 84
+ E EE+EE+EEEEEEE+E
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.1 bits (65), Expect = 0.28
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 67 EEEEEEEEQEEEEEEEKEQEEED 89
+ E EE EEEEEEE+E+EE D
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEID 245
Score = 29.1 bits (65), Expect = 0.31
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
E EE+EE EEEEEEEEE + E+ + +
Sbjct: 227 ESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKASTS 263
Score = 29.1 bits (65), Expect = 0.33
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 63 EEEEEEEEEEEEQEEEEEEE 82
+ E EE+EEE+EEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEE 242
Score = 28.7 bits (64), Expect = 0.38
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 66 EEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+ E EE++EEEEEEE+E+E + T E+R
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDVVTVEKR 252
Score = 28.0 bits (62), Expect = 0.84
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEEEKEQ 85
N + + E EE+E+EEEEEEE+E+
Sbjct: 217 NSSSSSGSDSESEEDEEEEEEEEEEEE 243
Score = 27.2 bits (60), Expect = 1.4
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 55 EEEENEENEEEEEEEEEEEEQ 75
+ E +EEEEEEEEEEE+
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 31.7 bits (72), Expect = 0.037
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+ +R + E E+ E EE+ E E+E E+E E EE EE
Sbjct: 396 EALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEE 447
Score = 31.3 bits (71), Expect = 0.058
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
A +++ +R E+ E E + E E E E+E+E E+ + ++ E R
Sbjct: 397 ALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 30.9 bits (70), Expect = 0.081
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
E EE E E+ E EE+ +E E E E+ED+ E + +
Sbjct: 400 REAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEE 445
Score = 30.5 bits (69), Expect = 0.097
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
EEE E EE E E+ E +E+ E ED+ +E
Sbjct: 394 EEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDE 434
Score = 29.4 bits (66), Expect = 0.23
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 39 LLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
L R A+E+ ++ EE+ E E+E E+++E EE + E+EEE
Sbjct: 398 LQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEE 447
Score = 29.0 bits (65), Expect = 0.36
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ +R+ EE + E E E E+ E E++ E E++ +E+
Sbjct: 384 KVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDED 435
Score = 29.0 bits (65), Expect = 0.36
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
L E + R + E E+ E E+E E+E+E E+ Q EE++
Sbjct: 398 LQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEE 446
Score = 29.0 bits (65), Expect = 0.40
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
++A+ +R+ + + E EE E E+ E EE+ E ++E + +E
Sbjct: 384 KVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDEL 437
Score = 27.1 bits (60), Expect = 1.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 40 LRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
RL EQ R + E E+E E+E+E E+ + EEEE+ +
Sbjct: 404 ERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 27.1 bits (60), Expect = 1.9
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E + K + EE + E EE E ++ E EE + E E
Sbjct: 379 EAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPE 428
Score = 25.9 bits (57), Expect = 3.6
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
D++ + E + EE E + E EE E E+ E E++ +
Sbjct: 377 DQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLP 427
Score = 25.9 bits (57), Expect = 4.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+E E+ + E + EEEE Q E EE + ++ E + R
Sbjct: 378 QEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDAR 419
Score = 25.9 bits (57), Expect = 4.8
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
++ E+ + E + EEEE + E EE E E+ + E+
Sbjct: 377 DQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRE 422
Score = 25.5 bits (56), Expect = 5.0
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ ++ + + E EEEE + E E+ E E+ + EE+ + E
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLREL 423
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 31.6 bits (72), Expect = 0.047
Identities = 9/50 (18%), Positives = 31/50 (62%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
+K ++E++N E++++ E++++++++++E + E E + +T
Sbjct: 47 NKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTP 96
>gnl|CDD|217633 pfam03600, CitMHS, Citrate transporter.
Length = 377
Score = 31.5 bits (72), Expect = 0.047
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEE 73
K RKR GE E E E + EE E E E
Sbjct: 195 KERKRLGEGELELERDTLEELEAEYEI 221
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 31.5 bits (72), Expect = 0.048
Identities = 11/39 (28%), Positives = 26/39 (66%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
+EEEE +E++++E++ + ++++EEE + E E +
Sbjct: 227 DEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTST 265
Score = 30.0 bits (68), Expect = 0.15
Identities = 7/35 (20%), Positives = 23/35 (65%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
++ ++EEEE +E +++E++ + +++D+ +
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESD 257
Score = 28.8 bits (65), Expect = 0.36
Identities = 8/39 (20%), Positives = 22/39 (56%)
Query: 57 EENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
++ ++ EEE +E+++ E++ + + +EE+ E
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVE 261
Score = 26.5 bits (59), Expect = 2.2
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
E +NE ++ ++EEEE E++++E+ + +D
Sbjct: 217 EIQNELDDIDDEEEERVLADEDDDDEDDMFDMDD 250
Score = 26.5 bits (59), Expect = 2.6
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 57 EENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
E E ++ ++EEEE +E++++E + + D +EE +
Sbjct: 217 EIQNELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPE 259
Score = 26.1 bits (58), Expect = 3.6
Identities = 8/39 (20%), Positives = 25/39 (64%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
+ ++EE E +E++++E++ + ++++E+E + E
Sbjct: 221 ELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPE 259
Score = 25.7 bits (57), Expect = 4.5
Identities = 6/38 (15%), Positives = 25/38 (65%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
+ ++E EE +E++++E++ + +++++E+ + +
Sbjct: 224 DIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVE 261
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 31.3 bits (71), Expect = 0.054
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
+ E+E E + E E+ ++++E E +++KE EE
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEE 106
Score = 25.9 bits (57), Expect = 3.7
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 61 ENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
E+E+E E EQ +++EE + +++++
Sbjct: 75 EDEKELSASSLEAEQAKKKEEAEAKKKKEM 104
Score = 25.1 bits (55), Expect = 6.5
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 61 ENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ E+E+E E E+ +++E+ + ++ + EE
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEE 106
Score = 25.1 bits (55), Expect = 8.3
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+ E+E+E E E+ +K++E E + +E
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEM 104
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 31.3 bits (71), Expect = 0.057
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
R +QK KR E+ ++ E+ + EE ++++ EQE ++ EKE+ + ++
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQ 119
Score = 30.9 bits (70), Expect = 0.078
Identities = 10/53 (18%), Positives = 29/53 (54%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
++ +++ ++E++ E ++++ E+E ++ E+E QE++ Q E
Sbjct: 72 KSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAA 124
Score = 25.2 bits (55), Expect = 6.7
Identities = 7/47 (14%), Positives = 24/47 (51%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
A++++ ++ + E E+ ++ EE ++ ++++ EE +
Sbjct: 98 AEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAA 144
Score = 24.8 bits (54), Expect = 8.7
Identities = 8/44 (18%), Positives = 26/44 (59%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
E+ ++K+ E+E + +E +E++++ EE ++ ++++
Sbjct: 90 EELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQ 133
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 31.0 bits (70), Expect = 0.063
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E R + +G +E E +E E + E EE E E E+ E +E D+ E
Sbjct: 247 SEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTET 297
Score = 31.0 bits (70), Expect = 0.074
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ +EE+ ++++ + E+ E +E E +E E++E + T+ E
Sbjct: 228 EEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGE 271
Score = 27.5 bits (61), Expect = 1.0
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E+ E E E +E EE+E + + E E+ + + + +E+
Sbjct: 242 DNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASED 285
Score = 26.3 bits (58), Expect = 2.9
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
+E R+ E + E +E E + E EE E + E E E D+++E
Sbjct: 244 NEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDE 293
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 31.1 bits (70), Expect = 0.065
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
E+ E E EE E EEE E E+E + ++ +D E
Sbjct: 371 EKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFR 413
Score = 28.8 bits (64), Expect = 0.47
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
++ + R EE E EE E+ E+E + + +++E E D+ N
Sbjct: 371 EKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKN 419
Score = 27.6 bits (61), Expect = 1.1
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
E++ ++ E+ E E EE E EE+ ++ ED+ + +
Sbjct: 359 PLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRI 402
Score = 27.3 bits (60), Expect = 1.3
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E+ ++ E+ E E EE E E+E E+ + N+
Sbjct: 358 VPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDH 398
Score = 26.9 bits (59), Expect = 2.0
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
E+K ++ ++ E+ E E EE E E+E ED +E
Sbjct: 346 AERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDE 395
Score = 25.3 bits (55), Expect = 7.5
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 29 QMHLARFLRMLLRLADEQKRRKRKGEEEEENE--------ENEEEEEEEEEEEEQEEEEE 80
+ +FL + ++ G EE E + E++ ++ E+ E E
Sbjct: 318 NLDFLQFLSKYIGCLWRNLNNEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIEN 377
Query: 81 EEKEQEEEDQTNEE 94
E+ E ++ E+
Sbjct: 378 RNPEESEHEEEVED 391
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 31.1 bits (70), Expect = 0.069
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 40 LRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
L L E+K K++ +E+ N +EE EE +E+QEEEE EE+E+
Sbjct: 304 LILGGEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEE 349
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 31.1 bits (71), Expect = 0.072
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEE 79
R+R +EEE E + +EE EEEE+ +
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 29.5 bits (67), Expect = 0.25
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEE 80
+R+ ++EEE + +EE EEE+E +
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 28.4 bits (64), Expect = 0.64
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEE 78
RR+ K EEE E + +EE EEEEE +
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 28.0 bits (63), Expect = 0.87
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
+EEE E + QEE EEE+E +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 27.2 bits (61), Expect = 1.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEEED 89
++EEE E + +EE E+EEE
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEES 337
Score = 27.2 bits (61), Expect = 1.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 65 EEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
++EEE + + +EE +EEE+ N+
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 26.5 bits (59), Expect = 3.1
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
++EEE E + +EE E+E+E +
Sbjct: 313 SKQEEEAAAEAAKAQEEAAEEEEESIND 340
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 31.1 bits (70), Expect = 0.075
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 29 QMHLARFLRMLLRLAD--EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
Q AR +R +LR + E+ + E+EE+ ++++ E E+EE+ E E E +E +
Sbjct: 183 QQAFARVVREMLRSMELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQ 242
Query: 87 EEDQTNEERVGGQ 99
E + T+ E G+
Sbjct: 243 ESEATDRESESGE 255
Score = 28.4 bits (63), Expect = 0.57
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+EQ + +G+E +E+E + E E EE+ + +++ +E D +E
Sbjct: 226 EEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSET 276
>gnl|CDD|236482 PRK09361, radB, DNA repair and recombination protein RadB;
Provisional.
Length = 225
Score = 30.6 bits (70), Expect = 0.075
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLA 43
L+++DSA +LYR + + S L R L LL+LA
Sbjct: 107 NVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLA 148
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 30.8 bits (70), Expect = 0.077
Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 43 ADEQKRRKRKGE----EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
D + R+ + E ++ E + ++ E++ EE + ++ E E +T E + G
Sbjct: 57 VDSELRKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSG 116
Query: 99 Q 99
+
Sbjct: 117 E 117
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 31.0 bits (70), Expect = 0.077
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
K ++EE++EE EE + EE +EE EEEE+ + E
Sbjct: 280 KEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEK 317
Score = 31.0 bits (70), Expect = 0.077
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E++EE +E + EE + EE +E+ EEEE+ E ++ N E
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIE 321
Score = 30.2 bits (68), Expect = 0.12
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEE 80
D K K K EE++E + E + EE +EE E+EE+
Sbjct: 274 DWLKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 28.7 bits (64), Expect = 0.51
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
K++ ++EE++EE + EE +EE EEE++ E E+
Sbjct: 282 KKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVN 319
Score = 28.3 bits (63), Expect = 0.75
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
L + +++++ K EE+ E + EE +EE EEEE+ E EK
Sbjct: 276 LKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEK 317
Score = 27.9 bits (62), Expect = 0.83
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
++K E++EE E + EE +EE EE+E+ E ++ + N++ +
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKKFIK 328
Score = 26.7 bits (59), Expect = 2.5
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
+K+ ++ E+ EE + E +EE EEEE+ E E+ E + +E + G+
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKKFIKEVIAGR 334
Score = 24.8 bits (54), Expect = 9.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
L ++++ + + EE + EE +EE EEEE+ E E+ E
Sbjct: 279 LKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIE 321
>gnl|CDD|225962 COG3428, COG3428, Predicted membrane protein [Function unknown].
Length = 494
Score = 30.9 bits (70), Expect = 0.077
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEE--EEEQEEEEEEEKE 84
L E + +K E E + EEE E + + E
Sbjct: 141 LVREARVKKLDALELAEADTPEEEVAEVLARSQSSVLRYPMNKGE 185
Score = 29.3 bits (66), Expect = 0.29
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEE 79
LA + + K + E E + EEE E + +
Sbjct: 137 ELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSS 175
Score = 28.2 bits (63), Expect = 0.63
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 40 LRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEE 82
A ++ R +K + E E + EEE E +
Sbjct: 137 ELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSSVLRY 179
Score = 25.5 bits (56), Expect = 6.6
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 9/75 (12%)
Query: 20 SGRGELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEE 79
G GE A + R + L + R K+ + E E + EEE E
Sbjct: 120 GGGGEAEAE--LVEREIAFELAALVREARVKKL-------DALELAEADTPEEEVAEVLA 170
Query: 80 EEEKEQEEEDQTNEE 94
+ E
Sbjct: 171 RSQSSVLRYPMNKGE 185
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 30.9 bits (71), Expect = 0.078
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
G + EE+ E EE + +E+EEEE+++ ++
Sbjct: 171 DGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDS 208
Score = 30.5 bits (70), Expect = 0.11
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
EE+ + E EE +++E EEEEE+E + +E
Sbjct: 175 DPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 29.8 bits (68), Expect = 0.16
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+ E + E EE +++++EEEEE++ + E
Sbjct: 175 DPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESEL 216
Score = 29.8 bits (68), Expect = 0.17
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
+ + E EE +++E+EEEE++E ++ E E
Sbjct: 179 EEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELP 217
Score = 28.6 bits (65), Expect = 0.49
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
EE+ + +E EE +++E+EE+EE+E ++ +E + E+
Sbjct: 178 AEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
Score = 28.2 bits (64), Expect = 0.70
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 39 LLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
+L D + +R+ E + + EE+ + EE ++++++EEE+ N+
Sbjct: 152 ILEWYDRLENGERRLRELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDEND 206
Score = 27.8 bits (63), Expect = 0.96
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
EE+ E EE +++E+E+EEE+E + ++ E+V
Sbjct: 178 AEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKV 220
Score = 26.3 bits (59), Expect = 2.9
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 24 ELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
L + L + + E+ E EE +++ +EEEEE+E ++ +E E
Sbjct: 158 RLENGERRLRELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELP 217
Query: 84 EQ 85
E+
Sbjct: 218 EK 219
Score = 25.9 bits (58), Expect = 3.9
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 61 ENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ EE+ E EE ++ E EEE++ +
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDEND 206
Score = 25.1 bits (56), Expect = 6.9
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 62 NEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ EE+ E EE + E+E++ +E
Sbjct: 172 GFVDPNAEEDPAHVGSELEELDDDEDEEEEEDE 204
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 30.9 bits (70), Expect = 0.082
Identities = 19/38 (50%), Positives = 20/38 (52%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
K KG E EEEEEEEEEEEE E E +E
Sbjct: 391 KEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 29.4 bits (66), Expect = 0.24
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 65 EEEEEEEEEEQEEEEEEEKEQEEE 88
EEEEEEEEE+EEE E + EE
Sbjct: 402 AEEEEEEEEEEEEEAAEAEAPMEE 425
Score = 29.4 bits (66), Expect = 0.25
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
R+ +E+ + E EEEEEEEE+EEEE E E E+
Sbjct: 387 REFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEP 426
Score = 29.0 bits (65), Expect = 0.30
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
+E E EEE+EEEEEEE+E E + EE V G
Sbjct: 391 KEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPG 429
Score = 26.7 bits (59), Expect = 2.5
Identities = 18/49 (36%), Positives = 21/49 (42%)
Query: 36 LRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
LR L+ + EEEEE EE EEE E E E+ E E
Sbjct: 386 LREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPE 434
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 30.8 bits (69), Expect = 0.087
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
EE EE E EE+EE E+E + +E+ E+EEE++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEEL 175
Score = 30.4 bits (68), Expect = 0.11
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
EEEE E EE+EE E+E + +E+ E+E+EEE +T ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 25.0 bits (54), Expect = 9.2
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
EEEEE E EE+E+ E+E K +E+ + EE
Sbjct: 141 EEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEE 173
Score = 25.0 bits (54), Expect = 9.8
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 54 EEEEENEENEEEEEEE-----EEEEEQEEEEEEEKEQEEED 89
EEE E EE+EE E+E +E+ E+EEEEE + ++ D
Sbjct: 143 EEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKDFID 183
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 30.6 bits (70), Expect = 0.090
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
GEEEEE EE EEEE + E + ++E+ Q +R
Sbjct: 225 GEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQE 269
Score = 29.1 bits (66), Expect = 0.27
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
EE EEEE EEEE + E + + +++ Q
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQ 266
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 30.4 bits (69), Expect = 0.092
Identities = 7/44 (15%), Positives = 35/44 (79%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
++++K K ++++ ++ ++++++++++++ + E+++EKE E++
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKL 122
Score = 30.0 bits (68), Expect = 0.13
Identities = 6/55 (10%), Positives = 38/55 (69%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
++QK + +K + +++ ++++++++++++++ ++++E+E +++ E+ +
Sbjct: 77 EYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSE 131
Score = 30.0 bits (68), Expect = 0.14
Identities = 13/70 (18%), Positives = 45/70 (64%)
Query: 24 ELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
E ++ LA + + + +E+++ K K ++ ++ ++ ++++++++++++ E+++E+E
Sbjct: 59 EAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEA 118
Query: 84 EQEEEDQTNE 93
E + ED T
Sbjct: 119 EDKLEDLTKS 128
Score = 26.6 bits (59), Expect = 2.1
Identities = 9/53 (16%), Positives = 40/53 (75%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
LA+E ++ K++ EE+++ + +++ ++++++++ +++++++ + E++D+ E
Sbjct: 67 LAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAE 119
Score = 25.0 bits (55), Expect = 7.5
Identities = 8/51 (15%), Positives = 33/51 (64%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
++ K K E EE+ + ++++ ++++++ +++++++K+ + E + +E
Sbjct: 68 AEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEA 118
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 30.4 bits (69), Expect = 0.092
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Query: 39 LLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
LL L +E + E E E E + +EE ++ +
Sbjct: 110 LLALMEE-------EDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKS 156
Score = 28.1 bits (63), Expect = 0.56
Identities = 10/43 (23%), Positives = 13/43 (30%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
EEE+ E E E E E + E+ G
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSG 157
Score = 26.9 bits (60), Expect = 1.4
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEE 81
K K K +E+ +++ +E + +E+EE+++E
Sbjct: 179 KFYKPKQQEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 25.8 bits (57), Expect = 3.5
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
EEE+ + E E E E E++ +
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 25.0 bits (55), Expect = 8.1
Identities = 6/33 (18%), Positives = 20/33 (60%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEE 82
+ ++E+ +++ +E + +E+E+E++E
Sbjct: 181 YKPKQQEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 24.6 bits (54), Expect = 9.6
Identities = 7/34 (20%), Positives = 19/34 (55%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEE 79
+ K++ + +++ +E + +E+EEE+ E
Sbjct: 180 FYKPKQQEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 30.7 bits (69), Expect = 0.094
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
+ + E EE E +E E E E+
Sbjct: 388 QVDAEAASAAPEEPAALASEAHDETEPEVPEKAA 421
Score = 28.0 bits (62), Expect = 0.67
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+ + + EE E +E E E ++ + +
Sbjct: 388 QVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAK 428
Score = 28.0 bits (62), Expect = 0.80
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
+ ++ + E E+ E E E + E+
Sbjct: 380 AGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAP 422
Score = 27.6 bits (61), Expect = 0.90
Identities = 6/51 (11%), Positives = 13/51 (25%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
E + + + + + E EE E +E +
Sbjct: 366 TSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEV 416
Score = 26.9 bits (59), Expect = 2.2
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
+ + E EE + +E E + E+
Sbjct: 386 AHQVDAEAASAAPEEPAALASEAHDETEPEVPEKA 420
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 30.5 bits (69), Expect = 0.096
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 57 EENEENEEEEEEEEEEEEQEEEEEEE 82
E+ EE EE+ EE +E+E+E+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 0.21
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEE 79
E++EE EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.8 bits (62), Expect = 0.84
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEE 70
EQK K + EE +E+ EE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.8 bits (62), Expect = 0.98
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 40 LRLADEQKRRKRKGEEEEENEENEEEEEEEEEE 72
L+L ++ ++ K E+ E + +EEE+ E+E
Sbjct: 49 LQLLEQ---KEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.8 bits (62), Expect = 1.0
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEE 80
E++E +E + EE +E+EEEQ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.1 bits (60), Expect = 1.5
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQ 85
E+ EE+EE+ EE +++EEE+ E E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 25.9 bits (57), Expect = 3.6
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEE 81
E++ E+ E+ EE +E+EE++ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 25.2 bits (55), Expect = 7.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 61 ENEEEEEEEEEEEEQEEEEEEEKEQE 86
E +EE+EE+ EE E+EEE+ +++
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 25.2 bits (55), Expect = 8.8
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEE 88
E++EE+EE+ E+ +E+EEE+ ++E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 25.2 bits (55), Expect = 8.9
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 65 EEEEEEEEEEQEEEEEEEKEQEEEDQ 90
E++EE+EE+ EE +E+E+EQ E++
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 30.3 bits (69), Expect = 0.099
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
EE+ E+ EE E E EQ+EE +E + ++E D+ +
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADA 41
Score = 26.0 bits (58), Expect = 2.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 58 ENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
NEE + +E+ EE E E E++EE ++ E + +E
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEA 39
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 30.4 bits (69), Expect = 0.10
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
E ++ E EE E +EEE E E++E
Sbjct: 157 AEWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 30.0 bits (68), Expect = 0.12
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEE 77
+ + + EE +EEE E E++E
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 30.0 bits (68), Expect = 0.14
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
E ++ + EE EE E +EEE + +++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 28.8 bits (65), Expect = 0.31
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
E K K E E E +EEE E +++E +++K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 28.5 bits (64), Expect = 0.48
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 61 ENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E ++ + EE E+ E KE+E + +E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKE 191
Score = 26.5 bits (59), Expect = 2.0
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEE 72
+ K + EE E +EEE E E
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGE 188
Score = 26.5 bits (59), Expect = 2.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
K EE E E +EEE E E++E K+++
Sbjct: 159 WKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 30.3 bits (69), Expect = 0.10
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEE---EEEEKEQE 86
++++ + EE+ + EE ++EEEEEEE+ + + E E
Sbjct: 324 SKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 29.1 bits (66), Expect = 0.34
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
+E+ E +E+ EE ++EE+EEEEE + D
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLID 360
Score = 26.8 bits (60), Expect = 1.7
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEE 80
KRK ++ EE E+ EE ++EEEEEE+E ++
Sbjct: 322 LLSKRKEQQAEEKEKPAEEAKKEEEEEEEESVDD 355
Score = 26.1 bits (58), Expect = 4.2
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 66 EEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+E++ EE+++ EE +KE+EEE++ + + V
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDV 356
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 30.4 bits (69), Expect = 0.12
Identities = 10/33 (30%), Positives = 23/33 (69%)
Query: 58 ENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
E EE E +E++ + +++EE+++KE E+ ++
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 30.0 bits (68), Expect = 0.13
Identities = 12/39 (30%), Positives = 26/39 (66%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
K +EE + E+ E+E +E++ + +++EE+K++E E
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELE 584
Score = 29.6 bits (67), Expect = 0.19
Identities = 11/37 (29%), Positives = 27/37 (72%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
++EE E EE+E +E++ ++ +++EEK+++E ++
Sbjct: 549 DKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEK 585
Score = 28.1 bits (63), Expect = 0.84
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
EE + E+EE+E +EQ+ + +K++E++ + E+
Sbjct: 551 EELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKL 586
Score = 27.7 bits (62), Expect = 1.1
Identities = 10/41 (24%), Positives = 29/41 (70%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
D+++ +R+ EE+E +E + + +++EE++++E E+ ++
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 27.7 bits (62), Expect = 1.1
Identities = 8/33 (24%), Positives = 24/33 (72%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
E+EE E +E++ + ++++E++++E ++ E+
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 27.3 bits (61), Expect = 1.3
Identities = 12/43 (27%), Positives = 29/43 (67%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
+L D+++ ++ K E+E E+ + +++EE++++E E+ EK
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 26.9 bits (60), Expect = 1.8
Identities = 10/33 (30%), Positives = 24/33 (72%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
E+E +E +E++ + ++QEE++++E E+ E+
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 26.5 bits (59), Expect = 2.2
Identities = 8/33 (24%), Positives = 23/33 (69%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
E+EE+ E++ + +++E+++++E EK ++
Sbjct: 556 EKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 25.8 bits (57), Expect = 4.1
Identities = 7/40 (17%), Positives = 25/40 (62%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+++ E E+EE+E +E++ + +++E++++ + +
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLE 587
Score = 25.4 bits (56), Expect = 6.7
Identities = 8/36 (22%), Positives = 22/36 (61%)
Query: 40 LRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQ 75
L+ E+K ++ + + ++ EE++++E E+ E+
Sbjct: 553 LQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 25.0 bits (55), Expect = 8.7
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 39 LLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEE 74
L R +E++ K + + ++ E++++E E+ E+
Sbjct: 553 LQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 29.6 bits (67), Expect = 0.12
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
RRK EE E E EEE EEEE+ + E+++ EE
Sbjct: 8 RRKLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEE 54
>gnl|CDD|218055 pfam04386, SspB, Stringent starvation protein B. Escherichia coli
stringent starvation protein B (SspB), is thought to
enhance the specificity of degradation of tmRNA-tagged
proteins by the ClpXP protease. The tmRNA tag, also
known as ssrA, is an 11-aa peptide added to the C
terminus of proteins stalled during translation, targets
proteins for degradation by ClpXP and ClpAP. SspB a
cytoplasmic protein that specifically binds to residues
1-4 and 7 of the tag. Binding of SspB enhances
degradation of tagged proteins by ClpX, and masks
sequence elements important for ClpA interactions,
inhibiting degradation by ClpA. However, more recent
work has cast doubt on the importance of SspB in
wild-type cells. SspB is encoded in an operon whose
synthesis is stimulated by carbon, amino acid, and
phosphate starvation. SspB may play a special role
during nutrient stress, for example by ensuring rapid
degradation of the products of stalled translation,
without causing a global increase in degradation of all
ClpXP substrates.
Length = 153
Score = 29.9 bits (68), Expect = 0.12
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
E E + EEEEE+++ ++ E+E+ E K+ + +V
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSLKV 151
Score = 26.8 bits (60), Expect = 1.7
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
E EE +EEEEE++++ ++ E E+ + + + G
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKG 145
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 30.2 bits (68), Expect = 0.12
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
QK +++ E+EE EE E E+EEEE+ ++EEE++Q + + +
Sbjct: 134 QKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQA 182
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 30.2 bits (68), Expect = 0.12
Identities = 11/29 (37%), Positives = 25/29 (86%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEE 82
+ +ENE+++ +E+E+++E+E E+E+E+E
Sbjct: 882 SQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 29.4 bits (66), Expect = 0.28
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
EE + +E E+++ +E+E ++E+E+E E E+E
Sbjct: 877 EEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 28.6 bits (64), Expect = 0.49
Identities = 9/27 (33%), Positives = 20/27 (74%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
+ +E E+++ E+E+++E E E+ED+
Sbjct: 882 SQFQENEDDDADEDEDQDEDEDEDEDE 908
Score = 28.3 bits (63), Expect = 0.69
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 57 EENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
EE ++ +E E+++ +E E+++E+E E E+ED+
Sbjct: 877 EEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 27.9 bits (62), Expect = 1.0
Identities = 9/26 (34%), Positives = 21/26 (80%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEE 78
E E+++ + +E+++E+E+E+E E+E
Sbjct: 885 QENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 27.5 bits (61), Expect = 1.3
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 66 EEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ +E E++ +E+E++ E E+ED+ +E
Sbjct: 882 SQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 27.1 bits (60), Expect = 1.7
Identities = 8/23 (34%), Positives = 20/23 (86%)
Query: 52 KGEEEEENEENEEEEEEEEEEEE 74
+ ++ +E+E+ +E+E+E+E+E+E
Sbjct: 888 EDDDADEDEDQDEDEDEDEDEDE 910
Score = 25.2 bits (55), Expect = 7.5
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
N+ + EE + +E E+++ +E E ++ED+ +E
Sbjct: 871 NDLTDLEEYLISQFQENEDDDADEDEDQDEDEDEDE 906
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 30.4 bits (68), Expect = 0.13
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 42 LADEQKRRKRKGEEEEENEENEEE-----EEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
L EQK ++ E + ++E+ E+++ +E+E EEE ++ ++E Q + +
Sbjct: 3917 LETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQ 3974
Score = 30.0 bits (67), Expect = 0.18
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 54 EEEEENEEN-EEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
++E+ NE+ EE +E EE E + +EE EQ E +
Sbjct: 4058 DDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPED 4096
Score = 29.6 bits (66), Expect = 0.20
Identities = 8/46 (17%), Positives = 25/46 (54%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
+E ++ + + +++ +E+E+EEE + ++E + +E+
Sbjct: 3931 NESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQEN 3976
Score = 29.6 bits (66), Expect = 0.21
Identities = 9/47 (19%), Positives = 20/47 (42%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
+++ + ++E+ E+ EE +E EE E + E+
Sbjct: 4048 QQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVP 4094
Score = 29.6 bits (66), Expect = 0.27
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 39 LLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
L LA+E+ + +E E E E + ++ E E + E+E +D E
Sbjct: 3837 LEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEE 3891
Score = 27.7 bits (61), Expect = 1.1
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 38 MLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEE-----EEEEKEQ----EEE 88
M + ADE K ++E +E+ EE +E+ Q+++ E++EK EE
Sbjct: 4011 MDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEEN 4070
Query: 89 DQTNEE 94
Q NEE
Sbjct: 4071 VQENEE 4076
Score = 27.3 bits (60), Expect = 1.6
Identities = 9/47 (19%), Positives = 26/47 (55%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
A+ + K ++ + E+ + +E+E+EEE + ++E + + ++
Sbjct: 3929 ANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQE 3975
Score = 26.9 bits (59), Expect = 1.8
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEE-KEQEEEDQTNEERV 96
E+ EEN +E EE E+ + +EE E+ + E++ N ++
Sbjct: 4062 MNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKM 4105
Score = 26.5 bits (58), Expect = 2.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 57 EENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
E +EN+EE + E++E Q+E+ EE +ED ++
Sbjct: 4014 EAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFS 4053
Score = 26.1 bits (57), Expect = 3.6
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E+ ++++ ++ E++E+ E+ EE +E E+ ED +
Sbjct: 4045 EDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSD 4085
Score = 25.7 bits (56), Expect = 4.9
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK-EQEEEDQTNEERVGGQ 99
+L DE E++ NE++ E + +E + + E+K QE+ED+ G
Sbjct: 3906 KLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGI 3965
Score = 25.7 bits (56), Expect = 5.2
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 44 DEQKRRKRKGEEEEENEENEEEE---EEEEEEEEQEEEEEEEKEQEEED 89
D+ K + K +E+E+EE ++ ++E + + QE + E E+ D
Sbjct: 3940 DDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLD 3988
Score = 25.3 bits (55), Expect = 7.1
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 42 LADEQKRRKRKGEEEE--ENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
LA++ ++ G EE ENEE+ E+ + +EE EQ E E++ +
Sbjct: 4055 LAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKS 4109
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 30.1 bits (68), Expect = 0.13
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
+ E E+ E E+ E +EE ++E ++ +K E +
Sbjct: 462 EAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVD 504
Score = 27.7 bits (62), Expect = 1.0
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
K EE + E+ E+ E +EE ++E ++ ++ E T
Sbjct: 456 KQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTY 506
Score = 26.6 bits (59), Expect = 2.4
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 38 MLLRLADEQKRRKR-KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+L + +E+ K + ++ +E EE E+ E+ E+ + QEE + ++V
Sbjct: 438 LLKKFLEEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKV 497
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 30.0 bits (67), Expect = 0.14
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
+++ R++RK ++ +E+ E++ E E + EE E E E EEE
Sbjct: 134 EKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEE 178
Score = 26.9 bits (59), Expect = 2.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
+KRRK K +E+ ++ E E + EE E E E E+E +
Sbjct: 138 RKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELD 180
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 29.8 bits (67), Expect = 0.14
Identities = 9/62 (14%), Positives = 25/62 (40%)
Query: 34 RFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
R +R L + + K E + ++ E+ + + + E +K +E + +
Sbjct: 11 RVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEK 70
Query: 94 ER 95
++
Sbjct: 71 KK 72
Score = 24.8 bits (54), Expect = 8.4
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 48 RRKR--KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
R KR + E E+ + N+++ E + +++ EK + ERV
Sbjct: 8 RAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKL 61
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 30.0 bits (68), Expect = 0.14
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEE 87
EEEEEEEEEEE+EEE E
Sbjct: 404 AEEEEEEEEEEEEEEEPVAEVMMMP 428
Score = 29.7 bits (67), Expect = 0.20
Identities = 16/24 (66%), Positives = 17/24 (70%)
Query: 61 ENEEEEEEEEEEEEQEEEEEEEKE 84
E EEEEEEEEE+EEEEE E
Sbjct: 400 ERWAAEEEEEEEEEEEEEEEPVAE 423
Score = 29.3 bits (66), Expect = 0.23
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 66 EEEEEEEEEQEEEEEEEKEQEEE 88
EEEEEEE+EEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 28.9 bits (65), Expect = 0.32
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQ 85
EEEEEEEEEE+EEEE +
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 28.9 bits (65), Expect = 0.38
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 65 EEEEEEEEEEQEEEEEEEKEQEE 87
EEEEEEEE+EEEEEE +
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 28.9 bits (65), Expect = 0.42
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQ 75
+R EEEE EE EEEEEEE E
Sbjct: 400 ERWAAEEEEEEEEEEEEEEEPVAEVM 425
Score = 28.5 bits (64), Expect = 0.48
Identities = 18/37 (48%), Positives = 19/37 (51%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
K K E EEEEEEEEEEEE+EE E
Sbjct: 392 KEKEHPVVERWAAEEEEEEEEEEEEEEEPVAEVMMMP 428
Score = 27.3 bits (61), Expect = 1.2
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 68 EEEEEEEQEEEEEEEKEQEEEDQT 91
EEEEE+EEEEEEE+E E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMM 426
Score = 27.3 bits (61), Expect = 1.4
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 67 EEEEEEEEQEEEEEEEKEQEEEDQ 90
EEEEEE+EEEEEEE+ E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMM 426
Score = 26.2 bits (58), Expect = 3.1
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKE 84
E EE EEEEEEEEEE E E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 25.8 bits (57), Expect = 3.9
Identities = 15/27 (55%), Positives = 15/27 (55%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEE 80
EEEEE EE EEEEEE E E
Sbjct: 405 EEEEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 25.8 bits (57), Expect = 3.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 70 EEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
EEE+EEEEEEE+E+E +
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 30.0 bits (68), Expect = 0.15
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
E + + K + E EE E EEQ+ ++E K + E Q EE +
Sbjct: 813 ESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEI 864
Score = 26.6 bits (59), Expect = 2.5
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+R + EE NEE++ ++E + + E +E +E+ + N+
Sbjct: 824 IQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKN 872
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 29.9 bits (67), Expect = 0.16
Identities = 15/55 (27%), Positives = 29/55 (52%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
D ++R + E E E++E+ EE EEE+ EEE ++ ++ + + + G
Sbjct: 296 DPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNG 350
Score = 27.2 bits (60), Expect = 1.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
N+ E E++ E + E E++E +E E++ NEE
Sbjct: 290 SSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEE 330
Score = 26.1 bits (57), Expect = 3.8
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
G + EE E+ E + E EQ+E+ EE +E++ E++ + G
Sbjct: 294 GNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKG 338
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 29.8 bits (67), Expect = 0.16
Identities = 16/43 (37%), Positives = 34/43 (79%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
+ +K ++EE+++++ + EE+E +E++EEEE EE+E+EE++
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 29.4 bits (66), Expect = 0.26
Identities = 18/43 (41%), Positives = 33/43 (76%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
K +K EE+++ + + EE+E +E+EE+EE EEEE+E++E++
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 27.5 bits (61), Expect = 1.2
Identities = 18/51 (35%), Positives = 35/51 (68%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
D K K ++ ++ E+++++ + EE+E +E+EEEEE E+EEE++ +E
Sbjct: 235 DGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 26.3 bits (58), Expect = 2.8
Identities = 13/52 (25%), Positives = 33/52 (63%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
A Q + + + + ++EE+++++ + E++E +E+E+E+E E++ EE
Sbjct: 230 AASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEE 281
Score = 25.6 bits (56), Expect = 5.4
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEE 81
+ +D+++ + G+ EE E E+EEEEE EEEE+EE+E+E
Sbjct: 245 KKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 29.7 bits (67), Expect = 0.19
Identities = 6/37 (16%), Positives = 18/37 (48%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
++ ++ EE EE +E ++ +K + ++ +
Sbjct: 160 KDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 28.9 bits (65), Expect = 0.29
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
E ++ ++ EE EE +E ++ Q+ E
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 26.2 bits (58), Expect = 2.9
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 57 EENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
E + ++EE EE +E ++ ++ +T
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETK 193
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 29.7 bits (66), Expect = 0.19
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
E + G+EE ++NE EE EEEE++ E + E+E+ + +E
Sbjct: 420 ENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDE 468
Score = 25.8 bits (56), Expect = 4.6
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEE--EEEKEQEEEDQTNEER 95
++++ +EN+ EE +EE ++ E EE +EEE Q E R
Sbjct: 414 DDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFR 456
Score = 25.0 bits (54), Expect = 8.6
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E+E EE+ + +EE ++++ +E + EE E
Sbjct: 392 WAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEES 432
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 29.9 bits (67), Expect = 0.19
Identities = 11/42 (26%), Positives = 28/42 (66%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
+KR++R+ E +E+E++ +E+E + E+E + +E+++
Sbjct: 356 RKRKRRRVPPLPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 27.9 bits (62), Expect = 0.82
Identities = 10/42 (23%), Positives = 26/42 (61%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
+RKR+ ++E+E++ +E+E E+E + + +E+++
Sbjct: 357 KRKRRRVPPLPEYSSDEDEDDSDEDEVDYEKERKRRREEDKN 398
>gnl|CDD|222508 pfam14033, DUF4246, Protein of unknown function (DUF4246). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and fungi.
Proteins in this family are typically between 392 and
644 amino acids in length.
Length = 496
Score = 29.5 bits (67), Expect = 0.20
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 37 RMLLRLADEQKRRKR-KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
L L D R + E + + +E EE + E E E+ E+ + EE EER
Sbjct: 241 ETLTPLKDAGHEPLRIEYYGVEYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREER 300
Score = 25.7 bits (57), Expect = 4.7
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 36 LRMLLRLADEQKR-------RKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
L L E R K +E EE + E+E+ E+ E+ EE + +E+
Sbjct: 243 LTPLKDAGHEPLRIEYYGVEYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREER 300
>gnl|CDD|219805 pfam08347, CTNNB1_binding, N-terminal CTNNB1 binding. This
region tends to appear at the N-terminus of proteins
also containing DNA-binding HMG (high mobility group)
boxes (pfam00505) and appears to bind the armadillo
repeat of CTNNB1 (beta-catenin), forming a stable
complex. Signaling by Wnt through TCF/LCF is involved
in developmental patterning, induction of neural
tissues, cell fate decisions and stem cell
differentiation. Isoforms of HMG T-cell factors lacking
the N-terminal CTNNB1-binding domain cannot fulfill
their role as transcriptional activators in T-cell
differentiation.
Length = 200
Score = 29.5 bits (66), Expect = 0.20
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQ--EEEEEEEK 83
DE K +GE+EE+ EN E + + + E E E
Sbjct: 16 DEMISFKDEGEQEEKISENVGAERDLADVKSSLVNESESSES 57
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 29.3 bits (66), Expect = 0.21
Identities = 12/54 (22%), Positives = 26/54 (48%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
++ ++K K + EE ++ E ++++ EE E + EE + +E N
Sbjct: 62 PATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSL 115
Score = 28.6 bits (64), Expect = 0.35
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
K+ K K EEE+ E+++++ EE E + EE + ++ + +
Sbjct: 70 KKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSD 117
Score = 26.6 bits (59), Expect = 2.0
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
+ A +K +K+ E+ E E+ E ++++ EE E + + EE +E +
Sbjct: 61 KPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESAS 111
Score = 26.6 bits (59), Expect = 2.0
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
K K ++++ E+ EEE++ E ++++ EE E + + EE ++E
Sbjct: 61 KPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQE 108
Score = 25.1 bits (55), Expect = 7.0
Identities = 9/51 (17%), Positives = 26/51 (50%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
RK ++ + ++ E+ EEE++ E +++ EE + + ++ + +
Sbjct: 59 PRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 29.7 bits (67), Expect = 0.22
Identities = 11/60 (18%), Positives = 25/60 (41%)
Query: 35 FLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
L+ L+ L K ++ +EE+N + + +E+++ + E E+ E
Sbjct: 200 HLKKLIILDTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLE 259
Score = 28.1 bits (63), Expect = 0.69
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
+ G + + E+ + + E E+ E +KE+ E
Sbjct: 224 NNGSNVNNNGNKNNKEEQ-KGNDLSNELEDISLGPLEYDKEKLE 266
Score = 25.4 bits (56), Expect = 6.6
Identities = 7/49 (14%), Positives = 19/49 (38%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
E+ +N + E++ + E E E ++E+ ++ +
Sbjct: 222 EKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKD 270
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 29.6 bits (67), Expect = 0.22
Identities = 9/42 (21%), Positives = 32/42 (76%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
++E+++E++++++ ++E+EE++E +E E+ +++ +E+
Sbjct: 151 DDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDED 192
Score = 29.6 bits (67), Expect = 0.23
Identities = 7/42 (16%), Positives = 33/42 (78%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
++++ ++++++E+++E+++++ ++E+EEK++ +E + +
Sbjct: 143 DDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDD 184
Score = 28.8 bits (65), Expect = 0.37
Identities = 8/39 (20%), Positives = 30/39 (76%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
++++++E+++E++++++ ++++EE++E KE E+
Sbjct: 145 DDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSD 183
Score = 28.8 bits (65), Expect = 0.42
Identities = 11/42 (26%), Positives = 33/42 (78%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+++E+++E++++++ ++E+EE++E +E EK +++D +E
Sbjct: 150 DDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDE 191
Score = 28.0 bits (63), Expect = 0.63
Identities = 6/41 (14%), Positives = 29/41 (70%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+E+++ ++++++ ++E+EE+++ +E E+ + ++ ++
Sbjct: 153 DEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDD 193
Score = 27.7 bits (62), Expect = 0.95
Identities = 10/48 (20%), Positives = 29/48 (60%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
L D+ E+++E++++++ ++E+EE++E +E E+ + +
Sbjct: 142 LDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVW 189
Score = 26.5 bits (59), Expect = 2.7
Identities = 7/40 (17%), Positives = 27/40 (67%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
++++++ ++E+EE++E +E E+ ++++ E++ +
Sbjct: 159 DDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALR 198
Score = 25.7 bits (57), Expect = 5.4
Identities = 7/41 (17%), Positives = 34/41 (82%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
++ ++++++E+++E++++++ +E+EE+++ +E E ++++
Sbjct: 145 DDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDD 185
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional.
Length = 852
Score = 29.3 bits (66), Expect = 0.23
Identities = 7/38 (18%), Positives = 18/38 (47%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
E++ E+ ++++ + + +EEED R+
Sbjct: 33 SEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMRRRLI 70
Score = 28.2 bits (63), Expect = 0.76
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 40 LRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
L D + R G E++ + ++++++ + EEEE
Sbjct: 19 LVGTDSGESRWVDGSEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMR 66
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 29.4 bits (67), Expect = 0.24
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
EEE EE + E EEE + E +E E +E+ + +
Sbjct: 40 EEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPA 82
Score = 29.4 bits (67), Expect = 0.26
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
EEEE +E + E EEE + E EE E E+E + +
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAA 80
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 29.2 bits (65), Expect = 0.25
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
K ++ + + + E + EE++ +EEQEEEE EE+ ++EE Q ++
Sbjct: 192 VKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 29.2 bits (65), Expect = 0.27
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 36 LRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
L+ L L + + K ++E+ + +E +E + EE+Q +EE+EE+E EEE + E
Sbjct: 180 LQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEE 237
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for
cell viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 29.3 bits (66), Expect = 0.25
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
K + + E +EEE++EE++ ++ EE ++ +E +
Sbjct: 60 KEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPK 97
Score = 29.3 bits (66), Expect = 0.31
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
EE E + + EE +EEE +EE++ + +E +D E
Sbjct: 55 REEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 28.1 bits (63), Expect = 0.68
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEE 82
L +E + K + EE++E E++EE++ ++ E+ ++ EE
Sbjct: 54 LREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 26.9 bits (60), Expect = 1.6
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 34 RFLRMLLRLADEQKRRKRKGE----EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
+ L E+ ++R EE EE +E + + EE +EEE++E++ ++
Sbjct: 26 DEDPLSLEELIERINQERGSFRDLTEESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDS 85
Query: 90 QTNEERV 96
+ N++ V
Sbjct: 86 EENKDTV 92
Score = 26.2 bits (58), Expect = 2.8
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
++ K EE + EE++EE++ ++ EE ++ EE K ++E
Sbjct: 59 AKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARDE 101
Score = 25.8 bits (57), Expect = 4.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
+E + EE +EEE++EE + ++ EE + E+
Sbjct: 59 AKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEF 95
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 29.2 bits (65), Expect = 0.27
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
E+EE +E +E+ E+E E + +EE+ E+ ++ E + R G
Sbjct: 954 EDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPG 997
Score = 28.8 bits (64), Expect = 0.43
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
+E+EE++E+ E+ E+E E + +EE+ E E E + + G+
Sbjct: 953 DEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGK 998
Score = 28.4 bits (63), Expect = 0.62
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+E E+ +E E + +EE+ E+ +E E + + + + R
Sbjct: 958 SDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGKRR 1000
Score = 27.7 bits (61), Expect = 0.99
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+E +E +E+EE +E E+ E E E + E++ ED E
Sbjct: 947 DESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELES 988
Score = 27.3 bits (60), Expect = 1.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E EEE E E ++E +E +++EE +E E ED++ +
Sbjct: 933 ESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESEND 973
Score = 26.9 bits (59), Expect = 2.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
E +E+ E +E E+ E+E E + +EE+ E +E ++
Sbjct: 951 ETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAY 992
Score = 25.7 bits (56), Expect = 5.1
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+E +E+EE E E ++E E +E+EE ++ ED + +E
Sbjct: 929 DESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDE 969
Score = 25.4 bits (55), Expect = 6.5
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
+DE + E E+ E+E E + +EE+ ++ +E E K +
Sbjct: 949 SDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGK 998
>gnl|CDD|233793 TIGR02237, recomb_radB, DNA repair and recombination protein RadB.
This family consists exclusively of archaeal RadB
protein, a homolog of bacterial RecA (TIGR02012),
eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and
archaeal RadA (TIGR02236).
Length = 209
Score = 28.9 bits (65), Expect = 0.29
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLA 43
+L++VDS ALYR + S + +R LAR L +LL LA
Sbjct: 97 SASLVVVDSFTALYRLELS--DDRISRNRELARQLTLLLSLA 136
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 28.9 bits (64), Expect = 0.29
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 29 QMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
Q+ AR R L E +RR+ K +E E+ EE E E EE+ EE+ ++ E E EQ+E
Sbjct: 127 QIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDES 186
Query: 89 DQTNEE 94
+ +++
Sbjct: 187 ETESDD 192
Score = 26.2 bits (57), Expect = 3.1
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 32 LARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
LA +R LR + +K+K + + + +E EE EE E E EEK E EDQ
Sbjct: 99 LAIRIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQE 158
Query: 92 NEER 95
+ER
Sbjct: 159 EQER 162
Score = 25.0 bits (54), Expect = 7.9
Identities = 21/50 (42%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
Q++ ++ +E EE EE E E EE+ +E+E++EE+E+E E+QT EE+
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQERE--REEQTIEEQ 172
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 29.2 bits (66), Expect = 0.31
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEE 78
LA + +EEE E+EE EE E +E+ E
Sbjct: 216 LARAILEGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 27.2 bits (61), Expect = 1.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 58 ENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
E +EEE EE++E EE E KE+ E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 26.9 bits (60), Expect = 1.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 57 EENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
E +EEE EE+E+ EE E ++E E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 26.1 bits (58), Expect = 2.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
E +EEE EE+EE +E E +EE +
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 25.7 bits (57), Expect = 3.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
E +EEE EE+EE EE E +E+ E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 24.5 bits (54), Expect = 9.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
E +EEE E++EE EE + +EE
Sbjct: 221 LEGRGGALDEEEAAIEEDEEVEEFEAKEEA 250
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 28.9 bits (64), Expect = 0.32
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 32 LARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEE---EEKEQEEE 88
LA L + + L +++ KR EE+E E+ E+ + E+ EQ+ E EE +E
Sbjct: 82 LAIILGLAIGLPIVKRKEKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEP 141
Query: 89 DQ 90
Q
Sbjct: 142 TQ 143
Score = 27.3 bits (60), Expect = 1.4
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 57 EENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
EE E E+ E+ + EQ E++ E + EE T E
Sbjct: 104 EEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEP 141
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 29.0 bits (66), Expect = 0.33
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
+ EEE +E+ E +E +E+E++ EK +
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 26.3 bits (59), Expect = 3.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
+ EE +E+ E +E EEKE++ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPE 539
Score = 25.5 bits (57), Expect = 5.4
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
+ E E +E+ E ++ EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 25.5 bits (57), Expect = 6.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ EEE +E+ E +E E++E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 28.8 bits (65), Expect = 0.35
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
E E EE EE EE + ++ + E++ + E+ Q
Sbjct: 829 EPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQLG 867
Score = 27.7 bits (62), Expect = 1.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
K K E E EE EEE EE E+ + E+ + E + +D+ +
Sbjct: 821 KVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 26.9 bits (60), Expect = 1.9
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
E EEE E EE + E+ + E + ++E+ +
Sbjct: 831 LPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQLG 867
Score = 26.5 bits (59), Expect = 2.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
E E EE EEE EE EE + E + + ++ GQ
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 28.9 bits (65), Expect = 0.37
Identities = 11/57 (19%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 44 DEQKRRKRKGEE------EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+E +R +R+ ++ E + E E+ ++E+++ E + + +E+ Q +E
Sbjct: 637 EENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQE 693
Score = 27.3 bits (61), Expect = 1.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 41 RLADEQKR-----RKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
R DEQ++ R+R+ +E+ + E + EE+ QE E+EE +Q
Sbjct: 666 RTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQ 715
Score = 26.5 bits (59), Expect = 2.8
Identities = 11/53 (20%), Positives = 27/53 (50%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+++++ + E + + + + ++E + EE+ +E EQEE Q + R
Sbjct: 667 TQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPR 719
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 28.9 bits (65), Expect = 0.38
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 31 HLARFLRMLLRLADEQKRRKRKGEEEEE------NEENEEEEEEEEEEEEQEEEEEEEKE 84
H A L + ++ +E + E + +E E E ++E E E E E
Sbjct: 198 HGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAE 257
Query: 85 QEEED 89
+ E+
Sbjct: 258 KIAEE 262
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 28.8 bits (64), Expect = 0.40
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 61 ENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
+++E + EEE+ ++ + E+ D TN
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNT 303
Score = 28.0 bits (62), Expect = 0.69
Identities = 9/40 (22%), Positives = 24/40 (60%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
+++E + N+ +EEE+ ++++ E+ ++ +ED N
Sbjct: 273 SDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDN 312
Score = 27.6 bits (61), Expect = 0.92
Identities = 7/36 (19%), Positives = 20/36 (55%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
E +++E + +E+E+ ++++ E ++ TN
Sbjct: 272 ESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGD 307
Score = 27.2 bits (60), Expect = 1.2
Identities = 5/40 (12%), Positives = 21/40 (52%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
+++E + + +EEE+ +++ E+ ++ ++ +
Sbjct: 272 ESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCD 311
Score = 26.8 bits (59), Expect = 2.1
Identities = 7/39 (17%), Positives = 19/39 (48%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
G E +++E + + +EEE+ + ++ E+ +
Sbjct: 270 GYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDE 308
Score = 25.7 bits (56), Expect = 4.4
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 62 NEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
N E +++E + +EEE +++++ N++
Sbjct: 268 NYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDD 300
Score = 24.9 bits (54), Expect = 8.2
Identities = 8/49 (16%), Positives = 23/49 (46%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
K E +++ + +EEE+ ++++ E+ + + +E+ G
Sbjct: 265 KGVNYGYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDNG 313
>gnl|CDD|153128 cd02437, CCC1_like_1, CCC1-related protein family. CCC1_like_1:
This is a protein family closely related to CCC1, a
family of proteins involved in iron and manganese
transport. Yeast CCC1 is a vacuole transmembrane
protein responsible for the iron and manganese
accumulation in vacuole. .
Length = 175
Score = 28.5 bits (64), Expect = 0.40
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
EE E++E+ EQ T EE
Sbjct: 53 GAAVAEEGSLRGMLEEKEKILLRLEQMLTS-TREEL 87
>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 28.9 bits (66), Expect = 0.41
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEE 74
RKR+ + E E EEEE E EEE
Sbjct: 327 RKREKKAAELAAEEAEEEEAAEPEEE 352
Score = 27.8 bits (63), Expect = 0.80
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEE 74
R++ K E EE EEEE E EEE
Sbjct: 327 RKREKKAAELAAEEAEEEEAAEPEEES 353
Score = 27.4 bits (62), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEE 73
++R++K E E EEE E EEE
Sbjct: 327 RKREKKAAELAAEEAEEEEAAEPEEES 353
Score = 26.2 bits (59), Expect = 2.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEE 72
+KR K+ E E E EE E EEE
Sbjct: 327 RKREKKAAELAAEEAEEEEAAEPEEES 353
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 28.6 bits (64), Expect = 0.41
Identities = 16/63 (25%), Positives = 37/63 (58%)
Query: 32 LARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
+ L +L + + K+ K K + ++ ++ +E ++++EEE E E+E + E+ ED +
Sbjct: 132 IMEGLDKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDS 191
Query: 92 NEE 94
++E
Sbjct: 192 DDE 194
Score = 25.2 bits (55), Expect = 7.0
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
+K +K++ +E + ++ EE E E+E + E+ E++ + E+EE+
Sbjct: 153 KKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEED 198
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 28.1 bits (63), Expect = 0.43
Identities = 11/47 (23%), Positives = 32/47 (68%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
L ++ ++K+K + +++ +++ +++ +EE +EE++E E++EE
Sbjct: 83 LEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 26.5 bits (59), Expect = 1.5
Identities = 8/46 (17%), Positives = 33/46 (71%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
+E+ +K+K + +++ +++ +++ +E++ +EE+++++E+E+
Sbjct: 84 EEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 28.8 bits (65), Expect = 0.43
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
E+ E E E E E+E+ EEE EEEE+E +
Sbjct: 4 FEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 28.0 bits (63), Expect = 0.65
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
G E+ EE EE E E+E+ EE++EEEE+E E Q +
Sbjct: 2 GFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQGLSKTKKN 47
Score = 27.2 bits (61), Expect = 1.2
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
E E E EE E E+E+ +EE+EEEEKE E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFE 35
Score = 26.8 bits (60), Expect = 1.8
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
E+ EEE EE E E+E+ EEE+EE+E+E +
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 26.1 bits (58), Expect = 3.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
E+ EEE E+ E E+E+ E+E+E++ E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGW 33
Score = 24.9 bits (55), Expect = 8.3
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
K EEE E E E+E+ EEE+EEE++E E +Q
Sbjct: 5 EKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQ 39
>gnl|CDD|218010 pfam04293, SpoVR, SpoVR like protein. Bacillus subtilis stage V
sporulation protein R is involved in spore cortex
formation. Little is known about cortex biosynthesis,
except that it depends on several sigma E controlled
genes, including spoVR.
Length = 427
Score = 28.7 bits (65), Expect = 0.44
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 27 ARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
A H+ R+ R + +E+K R+ + EE +++ N+ + E+ EEE K
Sbjct: 161 ALMNHVDRYKRPIKLSLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKRFP 220
Query: 87 EEDQTN 92
EE Q +
Sbjct: 221 EEPQED 226
Score = 25.2 bits (56), Expect = 5.9
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
R KR + E E+ +EE EE + + + Q E+ + R
Sbjct: 168 RYKRPIKLSLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERAR 215
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 28.2 bits (63), Expect = 0.44
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 58 ENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
+ EEEEEEEE E++Q+ +E + ++ ++ + E
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAE 127
Score = 27.9 bits (62), Expect = 0.59
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
EEEEE EENE++++ +E + +Q ++ E E EE
Sbjct: 97 EEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 27.1 bits (60), Expect = 1.3
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEEEKEQE 86
+EEEEEEEE E++++ +E + Q+
Sbjct: 91 TGHTRQEEEEEEEENEKQQQSDEAQVQQ 118
Score = 25.9 bits (57), Expect = 3.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
G EE EEEEE E++++ E + ++ ++ E + EE
Sbjct: 90 GTGHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 25.2 bits (55), Expect = 6.1
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 72 EEEQEEEEEEEKEQEEEDQTNEERV 96
++EEEEEE+E E++ Q++E +V
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQV 116
>gnl|CDD|221342 pfam11960, DUF3474, Domain of unknown function (DUF3474). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 126 to 140 amino acids in length.
This domain is found associated with pfam00487.
Length = 135
Score = 28.1 bits (63), Expect = 0.45
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 54 EEEEENEENEEEEEEE 69
EEEEE N+EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 27.7 bits (62), Expect = 0.62
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 56 EEENEENEEEEEEEEE 71
EEE EEN +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 27.7 bits (62), Expect = 0.63
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 53 GEEEEENEENEEEEEE 68
EEEEEN +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 27.7 bits (62), Expect = 0.75
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 64 EEEEEEEEEEEQEEEE 79
EEEEEE +E+EEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 27.3 bits (61), Expect = 1.1
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 67 EEEEEEEEQEEEEEEE 82
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 1.2
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 55 EEEENEENEEEEEEEE 70
EEEE E +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 1.3
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 66 EEEEEEEEEQEEEEEE 81
EEEEEE EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.5 bits (59), Expect = 1.7
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 69 EEEEEEQEEEEEEEKE 84
EEEEEE +EEEE+E
Sbjct: 74 EEEEEENGNDEEEEEE 89
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 28.4 bits (64), Expect = 0.46
Identities = 11/38 (28%), Positives = 26/38 (68%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
K+++RK +E +++++E+E+++ E E EE ++E
Sbjct: 188 KKQRRKRSKELREDDDDDEDEDDDGEGGGEGGEERQRE 225
Score = 26.9 bits (60), Expect = 1.9
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEE 82
+++RRKR E E+++++E+E+++ E E EE + E
Sbjct: 186 QRKKQRRKRSKELREDDDDDEDEDDDGEGGGEGGEERQRE 225
Score = 26.1 bits (58), Expect = 3.2
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEE 81
+ +Q+R++ K E+++++ +E+++ E E EE + E
Sbjct: 185 KQRKKQRRKRSKELREDDDDDEDEDDDGEGGGEGGEERQRE 225
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 28.7 bits (65), Expect = 0.46
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 50 KRKGEEEEENEENE----EEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
K G+E++ ++E E ++ +E E++K +E + NE
Sbjct: 485 KGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNE 532
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 28.5 bits (63), Expect = 0.47
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
KG + + E++++ EEE+ + ++ + +K Q
Sbjct: 110 KGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKKTQ 143
Score = 25.8 bits (56), Expect = 5.2
Identities = 10/52 (19%), Positives = 26/52 (50%)
Query: 38 MLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
+ R E ++ + ++ E ++ + + + EE++ + EEE+ K +D
Sbjct: 84 NITRSFQEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKD 135
Score = 25.4 bits (55), Expect = 6.5
Identities = 10/54 (18%), Positives = 27/54 (50%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
Q+ ++ E ++ E+N++ + + + EE +++ EEE + + + Q
Sbjct: 90 QEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSKKTQ 143
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The
domain is found in the primary vegetative sigma factor.
The function of this domain is unclear and can be
removed without loss of function.
Length = 211
Score = 28.3 bits (64), Expect = 0.47
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E E +EE+ E+ ++++E+E E +EE+
Sbjct: 35 AAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGP 75
Score = 26.8 bits (60), Expect = 1.7
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
E+E +EE+ E++++++E E+E++EE+ D
Sbjct: 41 AAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPD 76
Score = 26.8 bits (60), Expect = 1.8
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
+ E E +EE E+++++ E E+ED E +G
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLG 74
Score = 26.4 bits (59), Expect = 2.4
Identities = 11/36 (30%), Positives = 27/36 (75%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
E E +EE+ E++++++E+E++++EEE + + E+
Sbjct: 44 IESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 26.4 bits (59), Expect = 2.4
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
E +E + ++++++E+E+E+ EEE + + EE
Sbjct: 45 ESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
>gnl|CDD|182840 PRK10921, PRK10921, twin-arginine protein translocation system
subunit TatC; Provisional.
Length = 258
Score = 28.6 bits (64), Expect = 0.47
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 48 RRKRKGEEEEENEENEEEEE 67
+ +R+ EE + E+E+ EE
Sbjct: 239 KGRRREEENDAEAESEKTEE 258
Score = 28.2 bits (63), Expect = 0.52
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 47 KRRKRKGEEEEENEENEEEE 66
K R+R+ E + E E + EE
Sbjct: 239 KGRRREEENDAEAESEKTEE 258
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 28.4 bits (64), Expect = 0.49
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 23 GELSARQMHLARFLRMLLRLA-------DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQ 75
+L + L+ L L +E+K+ K EE + EE E+ E+E +E
Sbjct: 46 RKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKEL 105
Query: 76 EEEEEEEKEQEEEDQTNEERV 96
EEE E + + +E + ER+
Sbjct: 106 EEEISELENEIKELEQEIERL 126
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 28.6 bits (65), Expect = 0.50
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 39 LLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
L L E +++ + E + E +EE EE++E+ QEEE++ +E E+E
Sbjct: 525 LEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
Score = 26.3 bits (59), Expect = 2.7
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
E+ R+ + + EE +E E+ +EE EE++E+ +EE+++ E+ E
Sbjct: 526 EELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 28.4 bits (64), Expect = 0.51
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 63 EEEEEEEEEEEEQEEEEEEE 82
+EEEEEE+
Sbjct: 283 AAAAAAAAAAPAEEEEEEED 302
Score = 28.4 bits (64), Expect = 0.57
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 61 ENEEEEEEEEEEEEQEEEEEE 81
EE+EEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 28.1 bits (63), Expect = 0.59
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 63 EEEEEEEEEEEEQEEEEEEE 82
E+EEEEE++
Sbjct: 284 AAAAAAAAAPAEEEEEEEDD 303
Score = 28.1 bits (63), Expect = 0.70
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 60 EENEEEEEEEEEEEEQEEEEE 80
EEE+EEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.7 bits (62), Expect = 0.89
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 52 KGEEEEENEENEEEEEEEEEEE 73
EEEEEEE++
Sbjct: 282 AAAAAAAAAAAPAEEEEEEEDD 303
Score = 27.3 bits (61), Expect = 1.2
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 68 EEEEEEEQEEEEEEEKEQEEED 89
EEE+E+E++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDDM 304
Score = 26.9 bits (60), Expect = 1.5
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 56 EEENEENEEEEEEEEEEEEQE 76
EEEEEEE +
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 26.9 bits (60), Expect = 1.8
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 55 EEEENEENEEEEEEEEEEEE 74
EEEEEEE+
Sbjct: 283 AAAAAAAAAAPAEEEEEEED 302
Score = 26.9 bits (60), Expect = 1.9
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 54 EEEEENEENEEEEEEEEEEEE 74
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 26.5 bits (59), Expect = 2.4
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 58 ENEENEEEEEEEEEEEEQEEE 78
EEEEE+E++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 26.5 bits (59), Expect = 2.7
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 65 EEEEEEEEEEQEEEEEEEKE 84
EEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEED 302
Score = 26.1 bits (58), Expect = 2.8
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 67 EEEEEEEEQEEEEEEEKEQEE 87
EEEE+E+++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 26.1 bits (58), Expect = 3.4
Identities = 8/24 (33%), Positives = 9/24 (37%), Gaps = 3/24 (12%)
Query: 66 EEEEEEEEEQEEEEEEEKEQEEED 89
EEEEE EE+D
Sbjct: 283 AAAAAAAAAAPAEEEEE---EEDD 303
Score = 25.7 bits (57), Expect = 4.1
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 57 EENEENEEEEEEEEEEEEQEE 77
EEEEEE+++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 28.6 bits (64), Expect = 0.52
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
EEE+ ++E + E E EE EE+ + + +E R
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPR 281
Score = 27.8 bits (62), Expect = 0.92
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
EEE ++ + E E EE EEE + RV
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRRV 283
Score = 27.5 bits (61), Expect = 1.2
Identities = 11/44 (25%), Positives = 28/44 (63%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
DE+ + G +E++E+E++EE +EE +++++ ++K +
Sbjct: 322 KLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPR 365
Score = 24.8 bits (54), Expect = 9.3
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
+ EE ++E + E E EE EEE Q D+
Sbjct: 241 QEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
>gnl|CDD|216110 pfam00771, FHIPEP, FHIPEP family.
Length = 658
Score = 28.6 bits (65), Expect = 0.52
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEE 77
+RKR+ E E E E E E EEE ++
Sbjct: 295 LSKRKRQEAAEAEAEAAEAEAAAEPEEESWDD 326
Score = 27.8 bits (63), Expect = 0.84
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEE 78
++++ E E E E E E EEE ++
Sbjct: 296 SKRKRQEAAEAEAEAAEAEAAAEPEEESWDD 326
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 28.4 bits (63), Expect = 0.52
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
K++G+ E +EE E+E E +E EE E + E + ER+
Sbjct: 337 KQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERL 383
Score = 26.0 bits (57), Expect = 3.9
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
E +E E+E E +E EE E E E + + ++ E +
Sbjct: 346 ESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAETEI 388
>gnl|CDD|205286 pfam13105, DUF3959, Protein of unknown function (DUF3959). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 260 amino acids in length.
Length = 242
Score = 28.3 bits (63), Expect = 0.55
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
RK ++ + E EE E ++ KE + QT ER
Sbjct: 195 RKPSNSKDPRKYEHNYEENVPMYHMTEPIDQYKEPTTQGQTRMER 239
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B
(IRAGA and IRAGB). The function of MRVI1 is unknown
although mutations in the Mrvi1 gene induces myeloid
leukaemia by altering the expression of a gene important
for myeloid cell growth and/or differentiation so it has
been speculated that Mrvi1 is a tumour suppressor gene.
IRAG is very similar in sequence to MRVI1 and is an
essential NO/cGKI-dependent regulator of IP3-induced
calcium release. Activation of cGKI decreases
IP3-stimulated elevations in intracellular calcium,
induces smooth muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 28.4 bits (63), Expect = 0.59
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
+E+K +K + E E EE E + EE E EE +KEQ
Sbjct: 413 DAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQ 457
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 28.0 bits (63), Expect = 0.59
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
RK ++ E+ EEEEEE E EE EEE+ +E ++E + E+
Sbjct: 91 RKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREK 135
Score = 25.7 bits (57), Expect = 4.1
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
D++++ + + EE E E +EEE+ +E E+E + + E++ + E Q
Sbjct: 97 DKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQ 143
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 28.2 bits (63), Expect = 0.60
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
L E+K + + E E + E EE EEEE EE EE
Sbjct: 132 ALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEA 179
Score = 25.5 bits (56), Expect = 5.5
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
A + ++K E E EEEE EE EE +E E
Sbjct: 142 ARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 24.7 bits (54), Expect = 8.2
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
A + ++ E++ NE E E++ E EE EEE+
Sbjct: 124 AKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEE 170
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved
in conjugation with cellular fusion (mating) and
invasive growth. A high throughput localisation study
has localised RXT2 to the nucleus.
Length = 141
Score = 27.7 bits (62), Expect = 0.61
Identities = 8/38 (21%), Positives = 22/38 (57%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEE 81
K +E+ + ++++E++E++EE E+++E
Sbjct: 37 KRIKFNNPPRIDEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 26.2 bits (58), Expect = 2.2
Identities = 9/44 (20%), Positives = 27/44 (61%)
Query: 37 RMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEE 80
R +L + + +E+ + ++++E++E++EE + E+++E
Sbjct: 31 RDVLSRKRIKFNNPPRIDEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 24.7 bits (54), Expect = 7.9
Identities = 8/38 (21%), Positives = 23/38 (60%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
KR K + + + ++++E++E+++E + E++ E
Sbjct: 37 KRIKFNNPPRIDEDGGDIDDDDEDDEDDEEADAEDDDE 74
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 28.5 bits (63), Expect = 0.62
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
AD KR+ E + E+ +EE E E E E E D+ E
Sbjct: 541 ADPNGIAKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEE 591
Score = 25.4 bits (55), Expect = 6.9
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 58 ENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
E+ E ++ EQ +EE E E NE V
Sbjct: 547 AKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEV 585
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 28.3 bits (63), Expect = 0.62
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQE 76
KR E +E E EEEE + EE E E
Sbjct: 397 KRVVREVDEEEIEEEEEAMQPEEMEME 423
Score = 27.5 bits (61), Expect = 1.1
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
K KG + E +EEE EEEEE + EE E E E
Sbjct: 389 KEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEGFE 426
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 28.2 bits (63), Expect = 0.62
Identities = 6/41 (14%), Positives = 27/41 (65%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
++E + ++++++E+ E + ++ +++ +++ ED + + V
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTDNV 290
Score = 27.8 bits (62), Expect = 0.95
Identities = 5/35 (14%), Positives = 20/35 (57%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
++E + +++++E+ E + + +++ E E+
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDL 284
Score = 27.4 bits (61), Expect = 1.2
Identities = 5/39 (12%), Positives = 23/39 (58%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
++E + +++++E+ E + + +++ +++ E+ T
Sbjct: 249 SDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDT 287
Score = 27.4 bits (61), Expect = 1.3
Identities = 7/57 (12%), Positives = 31/57 (54%)
Query: 38 MLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+L+ +Q + ++ + + + ++E + ++++ E+ E + + ++D ++E+
Sbjct: 224 KVLKQPKKQAKSSKRRTIAQIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDED 280
Score = 27.0 bits (60), Expect = 1.7
Identities = 8/52 (15%), Positives = 26/52 (50%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
R Q +E + ++++++E+ E + ++ +++ +E ++ D N
Sbjct: 238 RRTIAQIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTDN 289
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 28.2 bits (63), Expect = 0.63
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 54 EEEEENEENEEEEEEEEEE------EEQEEEEEEEKEQEEEDQTNEERVGG 98
EEE+ N + EEE+EEE E +++E E E+ED+ ++E
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAES 51
Score = 27.5 bits (61), Expect = 1.2
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+EQ + EE+EE E + ++++ E+E++++E++++
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESP 52
Score = 27.5 bits (61), Expect = 1.3
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 39 LLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
L L +++ R + ++ + ++ + E EE + EE+EEKEQ E+
Sbjct: 772 LTELYEKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEE 822
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 28.0 bits (63), Expect = 0.64
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
EE EEEEEEE E +EEEEEE++E+++E ++
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAK 54
Score = 27.2 bits (61), Expect = 1.2
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 38 MLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
M +L ++ + K EE+ E EE EE E EEEEEE++EEE++EK
Sbjct: 1 MFDKLKEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEK 46
Score = 26.9 bits (60), Expect = 2.1
Identities = 20/29 (68%), Positives = 24/29 (82%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKE 84
EE+ EE EEEE E EEEE+EE+EEE+KE
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 28.1 bits (63), Expect = 0.65
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
E E EE E EE EEE EE+ + + ++ EE + E R
Sbjct: 148 ELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELR 188
Score = 28.1 bits (63), Expect = 0.72
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
EEEEE EE EEE EE+ + + + EE +++EE
Sbjct: 152 EEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
Score = 25.4 bits (56), Expect = 5.3
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 54 EEEEENEENEEEEEE-EEEEEEQEEEEEEEKEQEEEDQ 90
EEE EE EE EEE EE+ +++ + +E +E+++
Sbjct: 149 LPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase.
Length = 639
Score = 28.3 bits (63), Expect = 0.65
Identities = 9/64 (14%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 37 RMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEE-EEQEEEEEEEKEQEEEDQTNEER 95
R+L D+ + ++ + +++ +++E+ + Q + E E ++ E+
Sbjct: 101 RVLSATDDDTHSQTDDIIKQVTQKAGQDDSDQQEKNSQSQSASQAESLEHVQQSAQTSEK 160
Query: 96 VGGQ 99
V +
Sbjct: 161 VDEK 164
Score = 24.8 bits (54), Expect = 9.6
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
QK + +++E+N +++ + E E Q+ + EK E+E
Sbjct: 123 QKAGQDDSDQQEKNSQSQSASQAESLEHVQQSAQTSEKVDEKEPL 167
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 28.0 bits (63), Expect = 0.66
Identities = 10/55 (18%), Positives = 28/55 (50%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
E+K+ ++K + E+ E EE E+ +++ + ++ + E + + + +G
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPDPLG 462
Score = 25.7 bits (57), Expect = 5.3
Identities = 9/47 (19%), Positives = 26/47 (55%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
+L +Q++ ++K E+EE + +++ E ++ + + E +K +
Sbjct: 413 KLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 28.4 bits (63), Expect = 0.69
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
R ++ +E+ + E + E E E E +++E++ D
Sbjct: 794 AARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGID 836
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 28.1 bits (62), Expect = 0.69
Identities = 8/50 (16%), Positives = 25/50 (50%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
E E + E + + ++E+++ +E++ E +++ + +ER+
Sbjct: 94 FLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKERIASI 143
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 28.1 bits (63), Expect = 0.69
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
+EEE +E++ E EE EEE E EE ++ E +E +
Sbjct: 131 DEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKR 170
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97
family. This model family represents the major capsid
protein component of the heads (capsids) of
bacteriophage HK97, phi-105, P27, and related phage.
This model represents one of several analogous families
lacking detectable sequence similarity. The gene
encoding this component is typically located in an
operon encoding the small and large terminase subunits,
the portal protein and the prohead or maturation
protease [Mobile and extrachromosomal element
functions, Prophage functions].
Length = 384
Score = 28.1 bits (63), Expect = 0.69
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+ + E + E+ + E EEE+ E +EE +K E D+ E
Sbjct: 5 REALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELL 55
Score = 26.5 bits (59), Expect = 2.3
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
L + ++ +E + E+E+ E EEE+ E + +EE + + E EE
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEEL 54
Score = 25.0 bits (55), Expect = 8.6
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
E + + +E +E+ E EEE+ + + +EE ++ + + E +
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEEL 54
Score = 25.0 bits (55), Expect = 9.0
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
+ K E EE + + +EE ++ + E + EE E E + GG
Sbjct: 16 RKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGG 70
Score = 25.0 bits (55), Expect = 9.2
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
LA+ K ++ E+E+ E EE+ E + +EE ++ + E EE E +
Sbjct: 7 ALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAK 61
>gnl|CDD|153165 cd04893, ACT_GcvR_1, ACT domains that comprise the Glycine
Cleavage System Transcriptional Repressor (GcvR)
protein, and other related domains. This CD includes
the first of the two ACT domains that comprise the
Glycine Cleavage System Transcriptional Repressor
(GcvR) protein, and other related domains. The glycine
cleavage enzyme system in Escherichia coli provides
one-carbon units for cellular methylation reactions.
This enzyme system, encoded by the gcvTHP operon and
lpd gene, catalyzes the cleavage of glycine into CO2 +
NH3 and transfers a one-carbon unit to
tetrahydrofolate, producing
5,10-methylenetetrahydrofolate. The gcvTHP operon is
activated by the GcvA protein in response to glycine
and repressed by a GcvA/GcvR interaction in the absence
of glycine. It has been proposed that the co-activator
glycine acts through a mechanism of de-repression by
binding to GcvR and preventing GcvR from interacting
with GcvA to block GcvA's activator function. Evidence
also suggests that GcvR interacts directly with GcvA
rather than binding to DNA to cause repression. Members
of this CD belong to the superfamily of ACT regulatory
domains.
Length = 77
Score = 26.9 bits (60), Expect = 0.73
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 7 IVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADE 45
I+DS MA+ T+++ + +A+ L LA
Sbjct: 29 ILDSRMAILGTEFALTMLVEGSWDAIAKLEAALPGLARR 67
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 27.8 bits (63), Expect = 0.73
Identities = 7/40 (17%), Positives = 7/40 (17%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
EEE E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAA 116
Score = 27.1 bits (61), Expect = 1.6
Identities = 7/38 (18%), Positives = 8/38 (21%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
EEE E E E E +
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAA 114
Score = 25.9 bits (58), Expect = 3.3
Identities = 7/37 (18%), Positives = 8/37 (21%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
EEE E E + E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAA 113
Score = 25.9 bits (58), Expect = 3.6
Identities = 6/43 (13%), Positives = 6/43 (13%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
EE E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAA 119
Score = 25.5 bits (57), Expect = 4.5
Identities = 6/47 (12%), Positives = 6/47 (12%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
E E E E E E
Sbjct: 78 EEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAA 124
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 28.1 bits (62), Expect = 0.74
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 39 LLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
L RL + K K +++E E+ E+ EE E + E+QE+ ++ + Q + Q
Sbjct: 138 LNRLKPHMMKTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQ 189
Score = 26.9 bits (59), Expect = 1.6
Identities = 12/49 (24%), Positives = 30/49 (61%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
K +K++ +E++E E E + E++E+ Q+ + + + +Q+ + N +R
Sbjct: 151 KNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKR 199
Score = 25.8 bits (56), Expect = 4.0
Identities = 11/46 (23%), Positives = 28/46 (60%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
K + +K E +E+ E+ EE E + E++E+ ++ + + + +++ Q
Sbjct: 149 KSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQP 194
Score = 25.4 bits (55), Expect = 6.5
Identities = 12/44 (27%), Positives = 28/44 (63%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
K + + + +EN+E++E+ EE E Q E++E+ +Q + +++
Sbjct: 147 KTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQ 190
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 27.7 bits (62), Expect = 0.81
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQE 86
+ + EEE+ E++QE EE E K
Sbjct: 144 KPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.9 bits (60), Expect = 1.4
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEK 83
+ EEE+ E+++E +E E +
Sbjct: 144 KPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.2 bits (58), Expect = 2.8
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 65 EEEEEEEEEEQEEEEEEEKEQEEED 89
+++ + EEE+ E+++E E+ + +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLS 166
Score = 25.8 bits (57), Expect = 3.4
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEK 83
+++ E E+ E+++E EE + + K
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPK 170
Score = 25.8 bits (57), Expect = 3.6
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEEE 88
+++ + EEE+ ++++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLS 166
Score = 25.4 bits (56), Expect = 5.9
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 67 EEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+++ + EE++ E+++E E+ E +N +V
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKV 171
Score = 25.0 bits (55), Expect = 7.1
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEE 87
++ + EEE+ E+ +E EE E +
Sbjct: 143 DKPKIEEEKAEKDQEPEESETKLSN 167
Score = 25.0 bits (55), Expect = 7.1
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEE 88
+++ + EEE+ E+++E EE + +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 24.6 bits (54), Expect = 9.4
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEE 79
+++ + EE + E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 28.0 bits (63), Expect = 0.84
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 20 SGRGELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEE 79
L A Q + + L A E+ + + E +++ E E EE++QE E
Sbjct: 139 DPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEA 198
Query: 80 EEEKEQEEEDQTNEER 95
+ E+ QE+ +T++ER
Sbjct: 199 QLEQLQEKAAETSQER 214
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid
layers. The innermost capsid (core) is made of VP2. The
genomic RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 28.0 bits (62), Expect = 0.86
Identities = 11/62 (17%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 38 MLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEE---EQEEEEEEEKEQEEEDQTNEE 94
M R E +E+++E+ +++ E +E+ ++EE + + ++Q+++E
Sbjct: 1 MAYRNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQE 60
Query: 95 RV 96
+
Sbjct: 61 NL 62
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 27.7 bits (62), Expect = 0.91
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E+ + + EE E EE E+E EEE EE+ E E ++EQ + + +
Sbjct: 3 EKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAK 52
Score = 25.7 bits (57), Expect = 3.5
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
EE+ E E E EE E EE E E EEE +E+ E + +EE
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEE 42
Score = 25.7 bits (57), Expect = 3.6
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
EE E EEE EE E EE E+E EE+ EEE +
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAEL 38
Score = 25.7 bits (57), Expect = 3.8
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+ E+ EE EE E EE E+E EEE EE+ + E + ++
Sbjct: 4 KNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKI 46
Score = 25.7 bits (57), Expect = 4.4
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
+++ ++ EE EE E E E+E EEE +EE E E ++E+
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQA 44
Score = 25.3 bits (56), Expect = 4.7
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
EE E+E EE EEE E E +EE+ + E E + EER
Sbjct: 18 EEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEER 59
Score = 24.6 bits (54), Expect = 8.8
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
EE+ + EE EE E EE ++E EEE E+E E + +E
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDE 41
Score = 24.6 bits (54), Expect = 9.0
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
+EQ + + E EE E+E EEE EEE E E +EE+ + E
Sbjct: 5 NEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAE 48
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 27.9 bits (63), Expect = 0.93
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
EE N + EE+ E EE E EEEE+++EE+
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEK 88
Score = 24.8 bits (55), Expect = 9.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
EE+ E E EEEEE++EE++
Sbjct: 63 LEEQRERLEELAPELLEEEEEKKEEKKGLPP 93
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 27.5 bits (61), Expect = 0.95
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
AD + +E+E+++ EEEE + E+ + +E E +
Sbjct: 219 ADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGE 265
Score = 26.7 bits (59), Expect = 1.9
Identities = 15/66 (22%), Positives = 32/66 (48%)
Query: 29 QMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
Q AR +R +L D + + E + + +E++ +E+E+++Q EEEE
Sbjct: 192 QQAFARVVRDMLSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLS 251
Query: 89 DQTNEE 94
+ ++
Sbjct: 252 EDSDAS 257
Score = 26.3 bits (58), Expect = 2.7
Identities = 12/58 (20%), Positives = 27/58 (46%)
Query: 36 LRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
+ M L DE + + E+E++ + +E++++ EEEE + E ++
Sbjct: 206 MDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMES 263
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 27.7 bits (62), Expect = 0.96
Identities = 16/59 (27%), Positives = 35/59 (59%)
Query: 36 LRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
L +L + +E++++K + E +++++EEEE E EE+E ++E E + E + +
Sbjct: 72 LELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESS 130
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 27.6 bits (61), Expect = 1.0
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE----EEDQTNEER 95
++E K E E +E E+ +E EE+ EEEK+ + E + E
Sbjct: 683 ESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEE 740
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 27.8 bits (62), Expect = 1.1
Identities = 9/35 (25%), Positives = 25/35 (71%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
K E + ++ EE+ ++++++E+++EEE + +E+
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 27.0 bits (60), Expect = 1.9
Identities = 10/37 (27%), Positives = 25/37 (67%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
N ++ E + + EE+ ++++++EK++EEE + E+
Sbjct: 729 NGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 26.2 bits (58), Expect = 3.3
Identities = 9/35 (25%), Positives = 27/35 (77%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
++ E + ++ EE+ ++++++E+++EEE ++EE+
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEK 764
Score = 25.8 bits (57), Expect = 4.0
Identities = 7/35 (20%), Positives = 23/35 (65%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
++ + + EE+ ++++++E+++EE+ + EE
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEK 764
Score = 25.1 bits (55), Expect = 7.7
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQE---EEE-------EEEKEQEEEDQTNEERV 96
+ +R EEE + E E E + ++EQE EE+ EE ++ ++ D+T E RV
Sbjct: 247 ETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETEEIRV 306
Query: 97 GGQ 99
G+
Sbjct: 307 NGK 309
Score = 25.1 bits (55), Expect = 9.0
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE---EED 89
K+ E E E E EEE + E E E + ++EQE EED
Sbjct: 240 KKLKETSETEERVESEEETDVEIETASETKGTKQEQEGSTEED 282
>gnl|CDD|216831 pfam01988, VIT1, VIT family. This family includes the vacuolar
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar
iron transporter VIT1.
Length = 209
Score = 27.3 bits (61), Expect = 1.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKE 84
E + EE E E E+ E E + E E EE E
Sbjct: 59 ERDLEEAELEREKRELENDPEGEREELAE 87
Score = 25.7 bits (57), Expect = 3.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEE 82
K E + E E E E+ E E + E E EE E
Sbjct: 57 KSERDLEEAELEREKRELENDPEGEREELAE 87
Score = 25.7 bits (57), Expect = 3.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+ EE E E E++E E + E E+EE + R
Sbjct: 60 RDLEEAELEREKRELENDPEGEREELAEIYRAR 92
>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2);
Provisional.
Length = 719
Score = 27.5 bits (61), Expect = 1.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
+E+ +++ E + E E+E E + E ++ EEE Q
Sbjct: 442 DEDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQDK 479
Score = 27.1 bits (60), Expect = 1.5
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
E+ +++EE + E E+E E + E ++ E+E +D+
Sbjct: 443 EDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQDK 479
Score = 26.3 bits (58), Expect = 3.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+E+ +++EE + E E+E E + E T E
Sbjct: 442 DEDSDDDEEFQIPESEQEPETTKNETKDTAME 473
Score = 24.8 bits (54), Expect = 9.1
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
QK ++ ++ N + +E+ ++ EE + E EQE E NE +
Sbjct: 417 KNQKPQESSPSLDQTNAASRNSVMMDEDSDDDEEFQIPESEQEPETTKNETK 468
>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1
(CLPTM1). This family consists of several eukaryotic
cleft lip and palate transmembrane protein 1 sequences.
Cleft lip with or without cleft palate is a common birth
defect that is genetically complex. The nonsyndromic
forms have been studied genetically using linkage and
candidate-gene association studies with only partial
success in defining the loci responsible for orofacial
clefting. CLPTM1 encodes a transmembrane protein and has
strong homology to two Caenorhabditis elegans genes,
suggesting that CLPTM1 may belong to a new gene family.
This family also contains the human cisplatin resistance
related protein CRR9p which is associated with
CDDP-induced apoptosis.
Length = 437
Score = 27.6 bits (62), Expect = 1.1
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 15 YRTDYSGRGELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEE 74
Y D + +G S + +H F+ L ++K +K+ + E+EE EEE+
Sbjct: 123 YSLDPTDKGYDSGKAVH---FVFPLTTYLPKKKVKKKN------LLGGKSEKEEPEEEKT 173
Query: 75 QEEEE 79
++
Sbjct: 174 PAPDK 178
>gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase.
Length = 539
Score = 27.5 bits (61), Expect = 1.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEEE 88
E +++E EEQ E+E +E +
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDS 83
Score = 27.5 bits (61), Expect = 1.2
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 58 ENEENEEEEEEEEEEEEQEEEEEEEK 83
E ++E EE+ E+E +E + K
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
Score = 27.1 bits (60), Expect = 1.8
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEE 79
E + +E EE+ E+E +E + +
Sbjct: 58 SEAALQQDEGEEQRVEQELGQESSDSK 84
Score = 26.8 bits (59), Expect = 2.3
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 57 EENEENEEEEEEEEEEEEQEEEEEEE 82
E + +E EE+ E+E +E + +
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
Score = 26.4 bits (58), Expect = 2.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQ 85
E +++E EE+ EQE +E +
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
Score = 25.6 bits (56), Expect = 5.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 66 EEEEEEEEEQEEEEEEEKEQEEEDQ 90
E +++E +E+ E+E QE D
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDS 83
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF)
Superfamily; Provisional.
Length = 844
Score = 27.5 bits (61), Expect = 1.2
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
E++ N + E +++ E + +E+ Q DQTN+
Sbjct: 102 EDDAGNATSGESSTDDDSLLELPDRDEDADTQANNDQTNDFDQ 144
>gnl|CDD|222440 pfam13897, GOLD_2, Golgi-dynamics membrane-trafficking.
Sec14-like Golgi-trafficking domain The GOLD domain is
always found combined with lipid- or
membrane-association domains.
Length = 136
Score = 27.0 bits (60), Expect = 1.3
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEE 81
+E ++EEEEEE EEEE E + E
Sbjct: 52 SESSDEEEEEEAEEEEAETGDVE 74
Score = 27.0 bits (60), Expect = 1.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 62 NEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
+E +EEEEEE E+EE E + E + Q+
Sbjct: 52 SESSDEEEEEEAEEEEAETGDVEAGSKSQSR 82
Score = 25.4 bits (56), Expect = 4.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
+EEEEEE EEEE + + E + + +E
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSRPLVDE 87
Score = 25.0 bits (55), Expect = 5.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 58 ENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
E+ + EEEEE EEEE E + E K Q
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQ 80
Score = 24.6 bits (54), Expect = 9.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
E +EEEEEE +EEE E + + V
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSRPLVD 86
>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family. This protein is
found in bacteria. Proteins in this family are typically
between 234 to 465 amino acids in length. There is a
conserved GEV sequence motif.Most members are annotated
as being SprA-related.
Length = 261
Score = 27.1 bits (60), Expect = 1.3
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEE 82
A E + GEEE E ++ E ++ ++++EQ+++EE++
Sbjct: 73 ASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112
Score = 26.3 bits (58), Expect = 2.8
Identities = 11/47 (23%), Positives = 30/47 (63%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
Q+ +K+ E +E EEE E+++ E ++ ++++++Q++E++
Sbjct: 65 ASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEK 111
Score = 25.9 bits (57), Expect = 4.4
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ E N+E EEE E+++ + ++ +K+QE++ Q ++
Sbjct: 71 KQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112
Score = 24.7 bits (54), Expect = 9.7
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+ E+ + E EEE E+++ E ++ ++Q+E+ Q E++V
Sbjct: 72 QASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQV 113
>gnl|CDD|241384 cd13230, PH1_SSRP1-like, Structure Specific Recognition protein 1
(SSRP1) Pleckstrin homology (PH) domain, repeat 1.
SSRP1 is a component of FACT (facilitator of chromatin
transcription), an essential chromatin reorganizing
factor. In yeast FACT (yFACT) is composed of three
proteins: Spt16/Cdc68, Pob3, and Nhp6. In metazoans the
Pob3 and Nhp6 orthologs are fused to form SSRP1/T160 in
human and mouse, respectively. The middle domain of the
Pob3 subunit (Pob3-M) has an unusual double pleckstrin
homology (PH) architecture. yFACT interacts in a
physiologically important way with the central
single-strand DNA binding factor RPA to promote a step
in DNA Replication. Coordinated function by yFACT and
RPA is important during nucleosome deposition. These
results support the model that the FACT family has an
essential role in constructing nucleosomes during DNA
replication, and suggest that RPA contributes to this
process. Members of this cd are composed of the first
PH-like repeat. PH domains have diverse functions, but
in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 137
Score = 26.7 bits (60), Expect = 1.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
+EE E E N EEE EE+ + + E+E E E
Sbjct: 87 DEEIELELNLTEEELEEKYKGKLEKEYEGPLYE 119
>gnl|CDD|238688 cd01394, radB, RadB. The archaeal protein radB shares similarity
radA, the archaeal functional homologue to the bacterial
RecA. The precise function of radB is unclear.
Length = 218
Score = 27.0 bits (60), Expect = 1.4
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 2 KYALLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLA 43
K L++VDSA ALYR + LA+ L LL LA
Sbjct: 103 KVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLA 144
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 27.0 bits (61), Expect = 1.4
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
E E ++E + EE E
Sbjct: 536 EALIEASKEAAAAKAAAAAAAAPLAEEPIAET 567
Score = 25.1 bits (56), Expect = 7.6
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
E ++E + EE + +D
Sbjct: 537 ALIEASKEAAAAKAAAAAAAAPLAEEPIAETISFDD 572
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 27.1 bits (60), Expect = 1.4
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E++E E E+ EE+E EE EE E+EE ++ +EE
Sbjct: 63 FGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEE 101
Score = 26.3 bits (58), Expect = 2.9
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
GE++E E E+ EEEE E+ EE+EEE+ +EE ++
Sbjct: 64 GEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEE 101
Score = 25.6 bits (56), Expect = 4.5
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
G E E+ EEEE EE EE++EEE EEE E+ E
Sbjct: 69 GRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEP 104
Score = 25.2 bits (55), Expect = 6.2
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
D++ R + + E+ E EE EE EE+EEEE E+E EE E E+ T
Sbjct: 66 DDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELT 113
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 26.8 bits (59), Expect = 1.5
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+ + EE EE+EEE E+ E+ +EE+EE E+ EE+ +
Sbjct: 25 DSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSK 64
Score = 25.3 bits (55), Expect = 6.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
EE E +E E E+ E+ +EE EE EE E+E +
Sbjct: 29 EEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPS 67
Score = 24.9 bits (54), Expect = 7.0
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
K +K + ++EEE+ + + EE +E+EEE E ++ D+ +EE
Sbjct: 3 PKGNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEE 51
Score = 24.9 bits (54), Expect = 8.0
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
D Q + EEE E+ E+ +EE+EE EE +EE K
Sbjct: 25 DSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPS 67
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 27.3 bits (60), Expect = 1.5
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+ E++N ++ E EE+E E+E+EEEE KE + ++R
Sbjct: 758 DGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQR 799
Score = 26.2 bits (57), Expect = 4.0
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
E +EE+E EEE+EEEE +E + K+++ ++
Sbjct: 768 AESSEEDESSEEEKEEEENKEVSAKRAKKKQRKN 801
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 27.1 bits (61), Expect = 1.6
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 39 LLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
L+ +E R E EE + E ++ EQ EE EEE + + +D +E+
Sbjct: 328 LMTFIEENPRE----EAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDED 379
Score = 26.4 bits (59), Expect = 2.8
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 39 LLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
L + R+ EE E E E ++ E+ EE EEE+ + ++D ++
Sbjct: 325 CWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDD 380
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 27.2 bits (61), Expect = 1.6
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 38 MLLRLADEQKRRK----RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
+L + E + + KG+ + E E E+E + EEE++E + E KE
Sbjct: 463 FMLTMLPEFEGKPFKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKE 513
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or
more acidic residues. The function of members of this
family is unknown.
Length = 104
Score = 26.5 bits (59), Expect = 1.6
Identities = 7/46 (15%), Positives = 28/46 (60%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ R + E+ ++E+EE+E++ +++++++ + + D +++
Sbjct: 42 KSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDD 87
Score = 26.1 bits (58), Expect = 2.0
Identities = 8/48 (16%), Positives = 29/48 (60%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
K R + E+ +++E+EE+E++ + +++++++ + + D + +
Sbjct: 42 KSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVD 89
Score = 25.0 bits (55), Expect = 5.4
Identities = 5/51 (9%), Positives = 27/51 (52%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
+ + + E+ + +E+EE+E++ +++++++ + + ++ +
Sbjct: 42 KSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDD 92
Score = 24.6 bits (54), Expect = 8.5
Identities = 8/52 (15%), Positives = 34/52 (65%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
AD + K+ +EE+E++ +++++++++++ + ++++ + +++D E
Sbjct: 48 ADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLE 99
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 27.0 bits (60), Expect = 1.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
GE EE E +E E+ + EEE E E++ +EED+
Sbjct: 402 VGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 26.6 bits (59), Expect = 1.7
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
E+ K +EE+ + E+ E EE E+EE E+ EE E + E+ +E
Sbjct: 14 EEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDE 62
Score = 25.9 bits (57), Expect = 3.2
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
E K K + EE+ +ENE +EE++ +EE+ E EE E++E E+ + + E
Sbjct: 3 KECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNE 53
Score = 25.1 bits (55), Expect = 6.3
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+E E EE++ +EE+ E EE ++EE E+ E+ E + E
Sbjct: 19 KENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEEL 59
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 26.8 bits (60), Expect = 1.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
+ EEEEE E +E E E++ +E +E+ EEED
Sbjct: 16 KPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEED 57
Score = 26.5 bits (59), Expect = 2.5
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ EE E E +E E E++ E +EE E+
Sbjct: 17 PPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEED 57
>gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional.
Length = 903
Score = 27.2 bits (60), Expect = 1.8
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 29 QMHLARFLRML--LRLADEQKRR-KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
L +++L + E R + KG + + E E+E+ + + E +E E K +
Sbjct: 751 DEELNVLIKLLNKDYSSKETTRSVEEKGNAPDLDNEYEDEKLDNKNMRENNVDEVELKTE 810
Query: 86 EEEDQTNEE 94
+ + E
Sbjct: 811 LGTNVADTE 819
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 27.0 bits (60), Expect = 1.8
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
E + E+E E EE E E E E+Q
Sbjct: 137 YEYPKTDEEKELLREVEELESRLATEPSPAPELEEQ 172
Score = 26.6 bits (59), Expect = 2.0
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
G E + +EE+E E EE + E E ++
Sbjct: 134 GSFYEYPKTDEEKELLREVEELESRLATEPSPAPELEE 171
Score = 25.8 bits (57), Expect = 3.7
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
+EE+ E EE E E E E++
Sbjct: 139 YPKTDEEKELLREVEELESRLATEPSPAPELEEQLAL 175
Score = 25.8 bits (57), Expect = 4.0
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
E + +EE E E EE E E E EE+
Sbjct: 138 EYPKTDEEKELLREVEELESRLATEPSPAPELEEQ 172
Score = 25.1 bits (55), Expect = 7.3
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
EE+E E EE E E E EE+ E
Sbjct: 144 EEKELLREVEELESRLATEPSPAPELEEQLALME 177
Score = 25.1 bits (55), Expect = 7.4
Identities = 11/39 (28%), Positives = 13/39 (33%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
K E+E E E E E E EE+ E
Sbjct: 139 YPKTDEEKELLREVEELESRLATEPSPAPELEEQLALME 177
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 26.9 bits (59), Expect = 1.9
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK--EQEEEDQTNEERVGGQ 99
+E++ +++ EE+E+ EE EE EE E EEE +++E+ EK E+E + + +E + G+
Sbjct: 100 EEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGE 157
Score = 26.2 bits (57), Expect = 3.8
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+E++ + EE E E EEE +++E+ E+++E+E + E +E + E +
Sbjct: 108 EEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYII 160
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 27.1 bits (60), Expect = 1.9
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 36 LRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
L++L + E+ R++R+ E E E+N +EE+ +++E+ ++EEE+K +E E
Sbjct: 2566 LKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNRE 2623
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 26.7 bits (59), Expect = 1.9
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 43 ADEQKRRKRKGEEEE----ENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
++E+ K K + + +E+E+EE E E EEEE EE E + EE+
Sbjct: 283 SEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKE 340
Score = 25.6 bits (56), Expect = 5.4
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+ + +R EEE E+ +E+ + ++ E E+E+EE + E EE
Sbjct: 270 DEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESE 325
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 26.9 bits (59), Expect = 1.9
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 14/64 (21%)
Query: 41 RLADEQKRRKRKGEEEEEN--------------EENEEEEEEEEEEEEQEEEEEEEKEQE 86
R DE +R E+E++ E ++EEE E + E +E+++ E
Sbjct: 36 RAQDEYSQRSYSRFEDEDDDDDFPAPADGYSRGEAADDEEEGEASSDATEGHDEDDEIYE 95
Query: 87 EEDQ 90
E Q
Sbjct: 96 GEYQ 99
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 26.8 bits (59), Expect = 2.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
RLA+ + EE + E+E EE E + +E+E E ++ E
Sbjct: 223 RLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGE 270
Score = 26.0 bits (57), Expect = 3.6
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 19 YSGRGELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEE 78
+A + LA + M+ +E++R RK +E EEN E + ++E+E E+ ++ E
Sbjct: 211 DQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGE 270
Query: 79 EEEE 82
+ E
Sbjct: 271 TKPE 274
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 26.6 bits (59), Expect = 2.0
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
EE+E+ ++E +E EE+E + ++E+KE++E+
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEK 124
Score = 26.6 bits (59), Expect = 2.0
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
EE E+E++E ++ EE+E K ++E+ + E++V
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKV 126
Score = 26.3 bits (58), Expect = 2.2
Identities = 10/34 (29%), Positives = 24/34 (70%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
EE +E +E +E EE+E + ++E+++++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 25.9 bits (57), Expect = 3.1
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
EE E+ ++ +E EE+E + ++E++E+KE++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 26.5 bits (59), Expect = 2.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEE---EEEEKEQEEEDQTNEER 95
K GE + EEE E +++ E E+E++ +E E EER
Sbjct: 295 LKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEER 344
Score = 25.7 bits (57), Expect = 4.0
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 23 GELSARQMHLARFLRMLLRLAD---EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEE 79
GE S +++H AR L E+ R K K EE E EE +E + EE +++
Sbjct: 299 GEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKL 358
Query: 80 EEEKEQEEEDQTNEE 94
E+ +++ E+ ++N+
Sbjct: 359 EDLEKRLEKLKSNKS 373
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 26.1 bits (58), Expect = 2.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEEED 89
EE+++EEEEEEEKE+ EE+
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 25.7 bits (57), Expect = 3.2
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEE 82
EE++EEEEEEE++EE EEE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEE 96
Score = 25.3 bits (56), Expect = 3.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEE 87
EE++EE+EEEEE+E+ +EE
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 25.3 bits (56), Expect = 3.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEED 89
EE++E+EEEEEE++E EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEA 97
Score = 24.9 bits (55), Expect = 5.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEE 82
E ++EEEEEEEE+E+ EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 24.9 bits (55), Expect = 6.1
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEE 81
EE +EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 26.7 bits (60), Expect = 2.2
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 24 ELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEE-EQEEEEEEE 82
EL R+ L + + LL+ + R+ E+ EE E +E+E E++++E E++EEE EE
Sbjct: 76 ELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE 135
Query: 83 KEQEEEDQ 90
+E+ +
Sbjct: 136 LIEEQLQE 143
Score = 26.3 bits (59), Expect = 3.4
Identities = 16/51 (31%), Positives = 36/51 (70%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+E ++ +++ ++EEN + + E E+ EEE +++E+E E++Q+E ++ EE
Sbjct: 82 NELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEE 132
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane
glycoprotein with multiple putative transmembrane
helices it has a hydrophilic amino terminal and a
hydrophobic carboxy terminal. It has roles in proton
transport and assembly of the V-type ATPase complex.
This subunit is encoded by two homologous gene in yeast
VPH1 and STV1.
Length = 707
Score = 26.6 bits (59), Expect = 2.2
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 34 RFLRM-LLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
R L + +L K K + E + EEE + E E +E EE + E+E
Sbjct: 41 RKLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKE 96
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 26.5 bits (59), Expect = 2.6
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+ E+ + +EN E +E+ E+E + + E+E Q +RV
Sbjct: 3 LKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRV 51
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 26.1 bits (58), Expect = 2.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
+R+ + E ++E E +E EE E E E E E +K +
Sbjct: 97 QRQSRKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 25.7 bits (57), Expect = 3.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 58 ENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
E +EEE ++E EE + E E E E +
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKA 133
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein
is found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 26.2 bits (58), Expect = 2.7
Identities = 13/40 (32%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 44 DEQKRRKRK---GEEEEENEENEEEEEEEEEEEEQEEEEE 80
++K++K K G+++EE +E+E E+E++ +E E +E
Sbjct: 2 KKKKKKKSKLSFGDDDEEEDEDEGEDEKKVPKESSEPDEA 41
Score = 25.8 bits (57), Expect = 4.0
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
+++EEE+E+E E+E++ KE E D+ N
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEAN 42
Score = 25.0 bits (55), Expect = 6.5
Identities = 9/33 (27%), Positives = 22/33 (66%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
++EEE+E+E E++++ +E E +E + ++
Sbjct: 16 DDEEEDEDEGEDEKKVPKESSEPDEANVNPNKK 48
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 25.9 bits (57), Expect = 2.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 63 EEEEEEEEEEEEQEEE 78
EEE+EEE E +EEE
Sbjct: 98 EEEKEEEIPEPTKEEE 113
Score = 25.9 bits (57), Expect = 2.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKE 84
++EEE+EEE E +EEE E
Sbjct: 96 KKEEEKEEEIPEPTKEEELLGE 117
Score = 25.9 bits (57), Expect = 2.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 48 RRKRKGEEEEENEENEEEEE 67
K++ E+EEE E +EEE
Sbjct: 94 TSKKEEEKEEEIPEPTKEEE 113
Score = 24.8 bits (54), Expect = 8.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 38 MLLRLADEQKRRKRKGEEEEENEENEEEE 66
M +++ ++ +K + +EEE E +EEE
Sbjct: 85 MFVKVFNKLTSKKEEEKEEEIPEPTKEEE 113
Score = 24.8 bits (54), Expect = 8.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 71 EEEEQEEEEEEEKEQEEE 88
++EE++EEE E +EEE
Sbjct: 96 KKEEEKEEEIPEPTKEEE 113
>gnl|CDD|179892 PRK04922, tolB, translocation protein TolB; Provisional.
Length = 433
Score = 26.6 bits (59), Expect = 2.7
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 11 AMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQKR 48
+M LY T GRG L+A R R L AD + R
Sbjct: 391 SMVLYATREGGRGVLAAVSTD-GRV-RQRLVSADGEVR 426
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 26.4 bits (58), Expect = 2.8
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 58 ENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
EN E ++ E+ E + ++E +K + E + N E
Sbjct: 328 ENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREA 365
Score = 24.8 bits (54), Expect = 8.7
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
E E + E+ E + +++ ++ E+E + +ER
Sbjct: 328 ENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQER 369
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 26.5 bits (59), Expect = 2.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 61 ENEEEEEEEEEEEEQEEEEEEEK 83
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKP 263
Score = 26.1 bits (58), Expect = 3.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEE 81
E +E E EE E EE QEE E+
Sbjct: 240 AEADEAEPEEAETEEAQEEAAEK 262
Score = 25.7 bits (57), Expect = 5.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQ 85
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 25.3 bits (56), Expect = 5.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
+E E EE E E+ +EE EK Q
Sbjct: 242 ADEAEPEEAETEEAQEEAAEKPPSLNRQ 269
Score = 25.3 bits (56), Expect = 6.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 66 EEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
E +E E EE E EE +E+ E+ N +R+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKPPSLNRQRLE 272
Score = 25.3 bits (56), Expect = 7.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 62 NEEEEEEEEEEEEQEEEEEEE 82
E +E E EE E +E +EE
Sbjct: 240 AEADEAEPEEAETEEAQEEAA 260
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy
production and conversion].
Length = 588
Score = 26.5 bits (59), Expect = 3.0
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 27 ARQMHLARFLRMLLRLADEQKRRKRKG---EEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
+Q + L+ ++ + D Q + G + E+ + E+Q E +
Sbjct: 515 RKQYLM---LKAIMEINDYQSKAIDSGVTMDNLASLPVREKLSRMKIVPEDQVESYYSDL 571
Query: 84 EQEEEDQTNEER 95
+E +
Sbjct: 572 LEEIHKEYTNFI 583
>gnl|CDD|227429 COG5098, COG5098, Chromosome condensation complex Condensin,
subunit D2 [Chromatin structure and dynamics / Cell
division and chromosome partitioning].
Length = 1128
Score = 26.5 bits (58), Expect = 3.0
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 40 LRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
L A+ Q + G +E + E+E E++E + E E K E + E +
Sbjct: 436 LGSAENQLNSLKSGLQETLC-DGEKEVEQDEGQCRTELEGSFNKSAESRIENEVENI 491
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 26.2 bits (58), Expect = 3.0
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
E + EEN+ E EE E E EEE +EE+ +E + R G
Sbjct: 383 EARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGP 427
Score = 25.4 bits (56), Expect = 6.8
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 57 EENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
+ E ++EE + E EE + E E EE+ EEE++ ++ G+
Sbjct: 380 QRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGR 422
>gnl|CDD|221888 pfam13001, Ecm29, Proteasome stabiliser. The proteasome consists
of two subunits, and the capacity of the proteasome to
degrade protein depends crucially on the interaction
between these two subunits. This interaction is affected
by a wide range of factors including metabolites, such
as ATP, and proteasome-associated proteins such as
Ecm29. Ecm29 stabilises the interaction between the two
subunits.
Length = 497
Score = 26.1 bits (58), Expect = 3.1
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 24 ELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEE 58
+ + LAR LL+L + K R EE+++
Sbjct: 117 QHQDSLLRLARLFNGLLKLLPDWKLPPRGSEEDDK 151
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 26.0 bits (58), Expect = 3.2
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ + EEE EE E+ E E + E E+ EEE+ Q EE + +E
Sbjct: 126 EQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADE 171
>gnl|CDD|219927 pfam08601, PAP1, Transcription factor PAP1. The transcription
factor Pap1 regulates antioxidant-gene transcription in
response to H2O2. This region is cysteine rich.
Alkylation of cysteine residues following treatment with
a cysteine alkylating agent can mask the accessibility
of the nuclear exporter Crm1, triggering nuclear
accumulation and Pap1 dependent transcriptional
expression.
Length = 344
Score = 26.1 bits (57), Expect = 3.2
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEE 81
D+ E + + +++ ++ + Q+E+EE
Sbjct: 245 DKDYLSPSPDEGPPDAQVAGPKKDLADQIDNQDEDEEV 282
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase.
Length = 702
Score = 26.1 bits (57), Expect = 3.4
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 71 EEEEQEEEEEEEKEQEEEDQTNEER 95
EE+++EE + + KE+++ D+ N E+
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREK 37
Score = 25.3 bits (55), Expect = 6.7
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
EE++EEE + + +EE++ ++ E+ V
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREKHIPVTGMVS 46
>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein. This family consists of several
eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known
to suppress GCR2 and is highly expressed in the muscle
and heart. The function of this family is unknown
although it has been speculated that SGT1 may be
functionally analogous to the Gcr2p protein of
Saccharomyces cerevisiae which is known to be a
regulatory factor of glycolytic gene expression.
Length = 557
Score = 26.2 bits (58), Expect = 3.4
Identities = 13/61 (21%), Positives = 32/61 (52%)
Query: 31 HLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
FL+ +L L D++ + ++ +E+++E+++E+E+ EE E+ ++ D
Sbjct: 461 EFFEFLKNMLGLKDDEIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDA 520
Query: 91 T 91
Sbjct: 521 E 521
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 26.0 bits (58), Expect = 3.5
Identities = 10/41 (24%), Positives = 23/41 (56%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+EE + ++EEE+E+ ++ E ++ E E++ Q+
Sbjct: 168 SKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNF 208
>gnl|CDD|237205 PRK12792, flhA, flagellar biosynthesis protein FlhA; Reviewed.
Length = 694
Score = 26.2 bits (58), Expect = 3.5
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
+R+ + EEE + E ++ +E+ + E E
Sbjct: 325 RRRAARAAAEAAKVKREEESAQAEAKDSVKEQLRTAEIE 363
Score = 25.8 bits (57), Expect = 4.7
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
RR+ E + EEE + E ++ +E+ E E
Sbjct: 325 RRRAARAAAEAAKVKREEESAQAEAKDSVKEQLRTAEIE 363
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase
19 kDa subunit. This family contains several
DNA-directed RNA polymerase 19 kDa polypeptides. The
Poxvirus DNA-directed RNA polymerase (EC: 2.7.7.6)
catalyzes DNA-template-directed extension of the 3'-end
of an RNA strand by one nucleotide at a time.
Length = 167
Score = 25.8 bits (57), Expect = 3.5
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
E+ ++ + E ++++ EE EE+EE+EE+ + E D
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 26.3 bits (58), Expect = 3.5
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 39 LLRLADEQKRRKRKGEEEEENEENE-----EEEEEEEEEEEQEEEEEEEKEQ 85
L + +E K R+R + E E E E ++E E E +E++ + KE
Sbjct: 548 LEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEI 599
>gnl|CDD|213390 cd12147, Cep3_C, C-terminal domain of the Cep3, a subunit of the
yeast centromere-binding factor 3. Cep3, together with
Skp1, Ctf13, and Ndc10, forms the yeast
centromere-binding factor 3 (CBF3) which initiates
kinetochore assembly by binding to the CDEIII locus of
centromeric DNA. Cep3 is comprised of two domains, the
N-terminal DNA-binding module, a Zn2Cys6-cluster,
C-terminal domain, which dimerizes and is believed to be
involved in the recruitment of the Skp1-Ctf1
heterodimer.
Length = 552
Score = 26.1 bits (58), Expect = 3.6
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 38 MLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEE 77
L++ K + E EE+ E EE E + E
Sbjct: 507 SLIKGTGSLIPLKDELEGEEDETGTESEEFLLIVSEFESE 546
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 26.1 bits (58), Expect = 3.6
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
+++ +R + E + EEEE++E++EE ++EE +
Sbjct: 284 LEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLKA 324
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
Provisional.
Length = 576
Score = 26.1 bits (57), Expect = 3.7
Identities = 9/50 (18%), Positives = 20/50 (40%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
++ + + N + E+E E+ +E E+ E E++ N
Sbjct: 371 SNSEFSSDVENPPNPPNPDIPEQEPNIPEDSNKEVPEDVPMEPEDDRDNN 420
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 25.4 bits (56), Expect = 3.7
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 65 EEEEEEEEEEQEEEEEEEKEQEEED 89
EEEEE+EEEEEEE+E+ EE+
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 25.4 bits (56), Expect = 4.5
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEEED 89
EEEEEE+EEEEEEE+E EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEEA 96
Score = 24.6 bits (54), Expect = 6.4
Identities = 18/23 (78%), Positives = 19/23 (82%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEE 82
EEEEEEEEEEEE+EEE EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 24.6 bits (54), Expect = 6.5
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEE 87
EEEEEEE+EEEEEEE+ +EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 25.8 bits (57), Expect = 3.7
Identities = 7/40 (17%), Positives = 10/40 (25%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEE 81
+ +K + E E E EEE
Sbjct: 116 GPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 25.8 bits (58), Expect = 3.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
+G+ + E+ EE+EE+EE EEE + E KE +
Sbjct: 471 RGDLDLGKEDEEEKEEKEEAEEEFKPLLERLKEALGDK 508
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The
CAF-1 or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression
in addition to DNA-based checkpoints.
Length = 76
Score = 24.9 bits (55), Expect = 4.0
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEE 79
EEEEE E+ E E+EE+EEE++ ++ +
Sbjct: 49 EEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 24.5 bits (54), Expect = 5.9
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 60 EENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
E EEEEE E+ E E EE+EEE+ + + +
Sbjct: 46 AEWEEEEEGEDLESEDEEDEEEDDDDDMDG 75
Score = 24.5 bits (54), Expect = 6.1
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEED 89
+ E EEEEE E+ E E+EE++E++++D
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDD 71
Score = 24.5 bits (54), Expect = 6.2
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEE 82
E EE EE E+ E E+EE+EE++++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 24.9 bits (55), Expect = 4.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 63 EEEEEEEEEEEEQEEEEEEE 82
EEE++EE+EEEEE++
Sbjct: 62 AAAAAEEEKKEEEEEEEEDD 81
Score = 24.9 bits (55), Expect = 5.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 68 EEEEEEEQEEEEEEEKEQEEED 89
E+E++EEEE+E+E++D
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDDD 82
Score = 24.5 bits (54), Expect = 7.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 63 EEEEEEEEEEEEQEEEEEEE 82
EEE++E+EEEEEE+
Sbjct: 61 AAAAAAEEEKKEEEEEEEED 80
Score = 24.5 bits (54), Expect = 7.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 53 GEEEEENEENEEEEEEEEEEEE 74
EE ++EEEEEEEE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 25.6 bits (57), Expect = 4.3
Identities = 11/35 (31%), Positives = 26/35 (74%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEE 81
KR+K+K ++++E E EE++++ EE++E+++
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 25.7 bits (57), Expect = 4.5
Identities = 7/45 (15%), Positives = 22/45 (48%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
++++ EE + + + E+ E+ ++ +++EEE +
Sbjct: 26 ERKQALTEEERQASADESSEDASEDGSDDDSDDDEEEPIYNPLNL 70
>gnl|CDD|218889 pfam06088, TLP-20, Nucleopolyhedrovirus telokin-like protein-20
(TLP20). This family consists of several
Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
sequences. The function of this family is unknown but
TLP20 is known to shares some antigenic similarities to
the smooth muscle protein telokin although the amino
acid sequence shows no homologies to telokin.
Length = 162
Score = 25.4 bits (56), Expect = 4.5
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 40 LRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
+ + +K +EN+E+EE+ + E ++
Sbjct: 104 IVYWNSKKFVSAPVPHHSSEDENDEDEEDNADRAGIESGIDDSAP 148
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 25.9 bits (56), Expect = 4.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
+KR E E E E E E E E+ E E E+E+ E D+ +R+
Sbjct: 457 KKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRL 504
Score = 25.5 bits (55), Expect = 6.7
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 36 LRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+++L + E+ R+ + E E E E E E E E+E E + E++ D+ ER
Sbjct: 452 MKILEKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERER 511
Query: 96 V 96
V
Sbjct: 512 V 512
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 25.6 bits (56), Expect = 4.7
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
++ + +++ E E + ++ E E E+E E+E EEE +E+E++ E
Sbjct: 235 NDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKGE 285
Score = 25.6 bits (56), Expect = 4.9
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
KG++ NE E+E E+E EEE EE+E E + EE
Sbjct: 251 KGDKANTNETEIEDESEDEYEEEAGEEQENEDKGEE 286
Score = 25.2 bits (55), Expect = 7.6
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
+E+ E E + ++ E E E+E E E EEE +E
Sbjct: 232 DGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDK 283
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 25.4 bits (56), Expect = 4.7
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 64 EEEEEEEEEEEQEEEEEEEKEQEE 87
+ E EEEEEE EEEEE KE E+
Sbjct: 158 DLEPPEEEEEEIAEEEEEVKEPED 181
Score = 25.0 bits (55), Expect = 8.5
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 61 ENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
+ E +E+ E +EE K+ E EE+
Sbjct: 113 DLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDS 149
>gnl|CDD|224739 COG1826, TatA, Sec-independent protein secretion pathway
components [Intracellular trafficking and secretion].
Length = 94
Score = 25.0 bits (55), Expect = 4.8
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
R +K + +NE +EE + EE +++++E E + +EE DQ E
Sbjct: 37 REFKKAASDVKNELDEELKLEELDDKKKELTAELQATKEELDQLASE 83
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 25.7 bits (57), Expect = 4.8
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 44 DEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
D + K EE E +E E +E+ +E++EE EE EQ EE
Sbjct: 93 DRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREE 137
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 25.8 bits (56), Expect = 4.9
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 50 KRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
K + +EE EN E +EE + + +E EE+EE+ E EE ++ E
Sbjct: 294 KEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTE 337
Score = 24.7 bits (53), Expect = 9.9
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
+ ++++ EE E E ++EE + + +E EE+EE+++ +E E T
Sbjct: 290 SEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHT 336
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 25.7 bits (57), Expect = 5.0
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 23 GELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEE-EE 81
+L +M L+ + L + ++ + +N ++E+E E+ +EE E E E
Sbjct: 513 EQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSE 572
Query: 82 EKEQEEEDQTNEER 95
+ E + +
Sbjct: 573 SVSEARERRMALRQ 586
>gnl|CDD|240354 PTZ00310, PTZ00310, AMP deaminase; Provisional.
Length = 1453
Score = 25.9 bits (57), Expect = 5.0
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 24 ELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
E+ R+M + LR + RR+++ E EE +E E+ +
Sbjct: 1325 EVMLREMETTNERIVHLRAQVDSLRRQQRSLVERLTEEGIRRQEVSEQVAGENNSIALRV 1384
Query: 84 EQ-EEEDQTNEERVGG 98
+ E Q+ VGG
Sbjct: 1385 NRLRERLQSEGLTVGG 1400
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more
internally with limited reactivity in the C-terminal
domains, while P2 proteins seem to be more externally
located and are more likely to interact with other
cellular components. In lower eukaryotes, P1 and P2 are
further subdivided into P1A, P1B, P2A, and P2B, which
form P1A/P2B and P1B/P2A heterodimers. Some plant
species have a third P-protein, called P3, which is not
homologous to P1 and P2. In humans, P1 and P2 are
strongly autoimmunogenic. They play a significant role
in the etiology and pathogenesis of systemic lupus
erythema (SLE). In addition, the ribosome-inactivating
protein trichosanthin (TCS) interacts with human P0,
P1, and P2, with its primary binding site located in
the C-terminal region of P2. TCS inactivates the
ribosome by depurinating a specific adenine in the
sarcin-ricin loop of 28S rRNA.
Length = 103
Score = 25.0 bits (55), Expect = 5.0
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 70 EEEEEQEEEEEEEKEQEEED 89
E ++EE++EEE+E+ ++D
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 24.6 bits (54), Expect = 6.3
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 63 EEEEEEEEEEEEQEEEEEEE 82
E ++EE++EE+EEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 24.2 bits (53), Expect = 9.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 53 GEEEEENEENEEEEEEEEEEE 73
E + EE +EEEEEE +++
Sbjct: 77 AAAEAKKEEKKEEEEEESDDD 97
>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase.
Length = 633
Score = 25.6 bits (56), Expect = 5.0
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
L E K K + E + + ++EEEEE E+ EE+ T E
Sbjct: 446 LVTEVKTTKSVEHKSESSSSDGSGHDDEEEEEPLLSEDRVITSSVEEEVTEGE 498
>gnl|CDD|153040 pfam12606, RELT, Tumour necrosis factor receptor superfamily
member 19. This family of proteins is found in
bacteria and eukaryotes. Proteins in this family are
typically between 49 and 288 amino acids in length.
There are two completely conserved residues (K and Y)
that may be functionally important. The members of
tumor necrosis factor receptor (TNFR) superfamily have
been designated as the "guardians of the immune system"
due to their roles in immune cell proliferation,
differentiation, activation, and death (apoptosis). The
messenger RNA of RELT is especially abundant in
hematologic tissues such as spleen, lymph node, and
peripheral blood leukocytes as well as in leukemias and
lymphomas. RELT is able to activate the NF-kappaB
pathway and selectively binds tumor necrosis factor
receptor-associated factor 1.
Length = 50
Score = 24.1 bits (53), Expect = 5.2
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 69 EEEEEEQEEEEEEEKEQ 85
+ E+E EE++EEEKE+
Sbjct: 34 DPLEDEPEEKKEEEKEE 50
Score = 23.7 bits (52), Expect = 6.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 65 EEEEEEEEEEQEEEEEE 81
+ E+E EE++EEE+EE
Sbjct: 34 DPLEDEPEEKKEEEKEE 50
Score = 23.4 bits (51), Expect = 9.3
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 64 EEEEEEEEEEEQEEEEE 80
+ E+E EE+++EE+EE
Sbjct: 34 DPLEDEPEEKKEEEKEE 50
>gnl|CDD|233914 TIGR02538, type_IV_pilB, type IV-A pilus assembly ATPase PilB.
This model describes a protein of type IV pilus
biogenesis designated PilB in Pseudomonas aeruginosa but
PilF in Neisseria gonorrhoeae; the more common usage,
reflected here, is PilB. This protein is an ATPase
involved in protein export for pilin assembly and is
closely related to GspE (TIGR02533) of type II
secretion, also called the main terminal branch of the
general secretion pathway. Note that type IV pilus
systems are often divided into type IV-A and IV-B, with
the latter group including bundle-forming pilus,
mannose-sensitive hemagglutinin, etc. Members of this
family are found in type IV-A systems [Cell envelope,
Surface structures, Protein fate, Protein and peptide
secretion and trafficking].
Length = 564
Score = 25.7 bits (57), Expect = 5.3
Identities = 8/42 (19%), Positives = 22/42 (52%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
G + +E +E+ + EE + + ++E + E+D +++
Sbjct: 137 GGSDSLAKELGDEDIGDLEELDVDAIDDEGPDDIEQDAVDDD 178
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 25.7 bits (57), Expect = 5.3
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 40 LRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
K K + E E+ EE+ E E + E EE + +E
Sbjct: 17 EPQEYLNKLEDTK-LKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLREEIERLKE 70
>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only].
Length = 369
Score = 25.6 bits (57), Expect = 5.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
EE + E E EE E E ++E E+ E +D
Sbjct: 333 EETKAEAEAAEAEELPVEVEVLYDDEHEDFEIVRDDD 369
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 25.4 bits (56), Expect = 5.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
+ K +++ + E+ E+ E EE+ E+E E+ K QEE D
Sbjct: 63 KAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEESD 107
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 25.6 bits (56), Expect = 5.6
Identities = 12/49 (24%), Positives = 28/49 (57%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGGQ 99
+ E E E + EEE E ++++E++ +E+E K+ + + + ++ Q
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQ 50
Score = 25.6 bits (56), Expect = 6.3
Identities = 12/53 (22%), Positives = 30/53 (56%)
Query: 41 RLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
+ + +K EEE E ++ +EE+ +E+E ++ + ++E K + + Q ++
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASD 54
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 25.7 bits (56), Expect = 5.7
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+E+ E EEE + E E + E R
Sbjct: 486 DEDYLIVNGTNEPYEEEVIKTNENENFPLENESPCDGISR 525
Score = 24.9 bits (54), Expect = 8.1
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
+G +E+ N E EEE + E E E E
Sbjct: 483 RGADEDYLIVNGTNEPYEEEVIKTNENENFPLENES 518
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific
phytosulfokine precursor proteins. Phytosulfokines, are
active as either a pentapeptide or a C-terminally
truncated tetrapeptide. These compounds were first
isolated because of their ability to stimulate cell
division in somatic embryo cultures of Asparagus
officinalis.
Length = 74
Score = 24.6 bits (54), Expect = 5.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
R + +E ++ E E + +E E E E E EEE
Sbjct: 16 RPLPTDTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 25.4 bits (56), Expect = 6.0
Identities = 24/43 (55%), Positives = 30/43 (69%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEE 87
EQK + EE EE E++EEEE EEEE EE+ E EEE++E E
Sbjct: 5 EQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAE 47
>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional.
Length = 746
Score = 25.7 bits (56), Expect = 6.0
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 59 NEENEEEEEEEEEEEEQEEE 78
+ E +EE+ E+++ E
Sbjct: 605 DVELDEEDTEDDDAVELPST 624
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 25.4 bits (56), Expect = 6.1
Identities = 17/74 (22%), Positives = 35/74 (47%)
Query: 10 SAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEE 69
++ +R D + + R LR L + E++ R+ + E E+ E+ ++
Sbjct: 89 IVLSRHRRDGIKSDPNYEIRSDVRRQLRFLAQKQKEEEERRVERRRELGLEDPEQLRLKQ 148
Query: 70 EEEEEQEEEEEEEK 83
+ +EEQ+ E EE +
Sbjct: 149 KAKEEQKAESEETR 162
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 25.4 bits (56), Expect = 6.1
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 39 LLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQ 85
L R E K E + E E ++ EE E+ EE K +
Sbjct: 382 LDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSK 428
Score = 25.0 bits (55), Expect = 8.8
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 31 HLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEE--EEEEEEQEEEEEEEKEQEEE 88
A ++ DE+ R + + E E+ E+E + E + E+QE+E EE ++ EE
Sbjct: 259 AYADLEKLFNEALDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEE 318
Query: 89 DQT 91
+
Sbjct: 319 LRQ 321
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 25.2 bits (55), Expect = 6.2
Identities = 20/40 (50%), Positives = 23/40 (57%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNE 93
EE +NEE EEE E E EE EE EE E+ E + NE
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANE 41
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 25.5 bits (56), Expect = 6.3
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
E E E E E EE + EE E EEE+ +
Sbjct: 210 PETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPPVP 255
>gnl|CDD|220379 pfam09750, DRY_EERY, Alternative splicing regulator. This entry
represents the conserved N-terminal region of SWAP
(suppressor-of-white-apricot protein) proteins. This
region contains two highly conserved motifs, viz: DRY
and EERY, which appear to be the sites for alternative
splicing of exons 2 and 3 of the SWAP mRNA. These
proteins are thus thought to be involved in
auto-regulation of pre-mRNA splicing. Most family
members are associated with two Surp domains pfam01805
and an Arginine- serine-rich binding region towards the
C-terminus.
Length = 121
Score = 25.1 bits (55), Expect = 6.3
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEE-------EEQEEEEEEEKEQEEEDQTNEE 94
L D R R + +EE+E EE EE + EE E+EE+E+ E Q +
Sbjct: 47 LLDYIPRGSRNRRPYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQKKKS 106
Query: 95 RVGGQ 99
+ G
Sbjct: 107 KGGYN 111
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 25.3 bits (55), Expect = 6.4
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 57 EENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
E+ N++++++EEEE+ EE+ + + E
Sbjct: 21 EKQTPNKKDKKKEEEEQLSEEDAMLKGDLE 50
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family. eIF-3 is a multi-subunit complex
that stimulates translation initiation in vitro at
several different steps. This family corresponds to the
gamma subunit if eIF3. The Yeast protein Gcd10p has also
been shown to be part of a complex with the
methyltransferase Gcd14p that is involved in modifying
tRNA.
Length = 299
Score = 25.3 bits (56), Expect = 6.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 61 ENEEEEEEEEEEEEQEEEEEEEKE 84
E EE EEEE E EEE +
Sbjct: 274 EPPAEEIEEEEPEVLPEEELNTMK 297
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 25.4 bits (56), Expect = 6.5
Identities = 23/73 (31%), Positives = 36/73 (49%)
Query: 22 RGELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEE 81
++SA + LAR + +L + + ++ E E E EE EE EEE E E E
Sbjct: 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
Query: 82 EKEQEEEDQTNEE 94
E+ + + +Q EE
Sbjct: 785 EELEAQIEQLKEE 797
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 25.5 bits (55), Expect = 6.6
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 39 LLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+ A+E K++ + ++ EE+E+ E ++E EE ++ EE ++KE EE+ + E +
Sbjct: 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELK 1722
>gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd
subfamily; Phd is a cytosolic regulator of G protein
functions. It specifically binds G protein betagamma
(Gbg)-subunits with high affinity, resulting in the
solubilization of Gbg from the plasma membrane. This
impedes the formation of a functional G protein trimer
(G protein alphabetagamma), thereby inhibiting G
protein-mediated signal transduction. Phd also inhibits
the GTPase activity of G protein alpha. Phd can be
phosphorylated by protein kinase A and G
protein-coupled receptor kinase 2, leading to its
inactivation. Phd was originally isolated from the
retina, where it is highly expressed and has been
implicated to play an important role in light
adaptation. It is also found in the pineal gland,
liver, spleen, striated muscle and the brain. The
C-terminal domain of Phd adopts a thioredoxin fold, but
it does not contain a CXXC motif. Phd interacts with G
protein beta mostly through the N-terminal helical
domain.
Length = 175
Score = 24.9 bits (55), Expect = 6.6
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
+ D +K ++ K E+E+++++E++EE ++ EQ +E K
Sbjct: 13 INDWRKFKQLKESEQEDDDDDEDKEEFLQQYREQRMQEMHAK 54
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 25.5 bits (56), Expect = 6.8
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+ + E + + EE+ QE + +E + E +
Sbjct: 896 QNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQ 937
Score = 25.1 bits (55), Expect = 9.2
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 41 RLADEQKRRKRKGE-EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
E + EEN + E + + + + + +E+ Q
Sbjct: 867 VTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQ 917
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 25.4 bits (56), Expect = 7.0
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEE---EEEKEQEEEDQTNEE 94
KRR + + E+E EE + + E + E E ++EE
Sbjct: 211 KRRTKPIYRIGGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEE 261
>gnl|CDD|172358 PRK13831, PRK13831, conjugal transfer protein TrbI; Provisional.
Length = 432
Score = 25.1 bits (55), Expect = 7.0
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEE----EEKEQEEE 88
+ EE+ N + + EE E EEE ++EQEE+
Sbjct: 99 QQEEKAVNPFTPQPGQREERRPTLESEEEWRARLKREQEEQ 139
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 25.2 bits (55), Expect = 7.0
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
++ + EEE+EN + + +EEE++ E EE E+E++ E E + E+
Sbjct: 32 IIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQ 82
>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS
domains [General function prediction only].
Length = 429
Score = 25.3 bits (56), Expect = 7.2
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 25 LSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
L L + +L R+A+ R E EE EEE E E EE EE+E
Sbjct: 135 LRFFYRLLYPLIWLLNRIAN-AILRLFGVEPVEEEALTSTEEELELVSESAEEGVLEEEE 193
Query: 85 QE 86
+E
Sbjct: 194 RE 195
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 25.2 bits (55), Expect = 7.3
Identities = 11/40 (27%), Positives = 13/40 (32%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
EE E + E+ EE E E T EE
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEE 748
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein
ArcB; Provisional.
Length = 779
Score = 25.3 bits (56), Expect = 7.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 55 EEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQT 91
E E E+ EE +E E+ + E +E EE + E E Q+
Sbjct: 118 EIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQS 154
>gnl|CDD|225281 COG2425, COG2425, Uncharacterized protein containing a von
Willebrand factor type A (vWA) domain [General function
prediction only].
Length = 437
Score = 25.0 bits (55), Expect = 7.5
Identities = 23/75 (30%), Positives = 29/75 (38%)
Query: 25 LSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
LSA + L R+ +L L E +GE E E +EE E E EE EE
Sbjct: 102 LSAPESFLERWEELLQDLQREGSEDFLEGEREGLLSEKQEEISLSGEMEGILEEVEELIS 161
Query: 85 QEEEDQTNEERVGGQ 99
D + E G
Sbjct: 162 GRLWDMSAGELKKGD 176
>gnl|CDD|218427 pfam05093, CIAPIN1, Cytokine-induced anti-apoptosis inhibitor 1,
Fe-S biogenesis. Anamorsin, subsequently named CIAPIN1
for cytokine-induced anti-apoptosis inhibitor 1, in
humans is the homologue of yeast Dre2, a conserved
soluble eukaryotic Fe-S cluster protein, that functions
in cytosolic Fe-S protein biogenesis. It is found in
both the cytoplasm and in the mitochondrial
intermembrane space (IMS). CIAPIN1 is found to be
up-regulated in hepatocellular cancer, is considered to
be a downstream effector of the receptor tyrosine
kinase-Ras signalling pathway, and is essential in
mouse definitive haematopoiesis. Dre2 has been found to
interact with the yeast reductase Tah18, forming a
tight cytosolic complex implicated in the response to
high levels of oxidative stress.
Length = 97
Score = 24.7 bits (54), Expect = 7.6
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 66 EEEEEEEEEQEEEEEEEKEQEEEDQTNEERVGG 98
EEEE+E++++ ++++ E + + T E +
Sbjct: 34 EEEEQEKKDKSAAQQQKVEDDLAEITVEGKTSS 66
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 341
Score = 25.2 bits (56), Expect = 7.9
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 15/56 (26%)
Query: 48 RRKRKGEEEEENEENE---------------EEEEEEEEEEEQEEEEEEEKEQEEE 88
R R EEEEE + + +EE+EE EEE E E E +
Sbjct: 258 TRYRTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALA 313
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 25.0 bits (55), Expect = 8.3
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
+ R R+ ++ EEN+E +E E EE ++ +E EQ + E +
Sbjct: 151 EDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVK 199
>gnl|CDD|226951 COG4585, COG4585, Signal transduction histidine kinase [Signal
transduction mechanisms].
Length = 365
Score = 25.1 bits (55), Expect = 8.3
Identities = 17/68 (25%), Positives = 24/68 (35%)
Query: 5 LLIVDSAMALYRTDYSGRGELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEE 64
LI+ + L L + LA + +LL L + R + E E
Sbjct: 103 ALILFLLLLLAIALILLALFLLLLALVLATLIAILLLLEGVIRERAKLKALLAERLERAL 162
Query: 65 EEEEEEEE 72
E EE EE
Sbjct: 163 IELEELEE 170
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 25.0 bits (55), Expect = 8.4
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+KR+ EE+ E E+ E++ + +EE ++++ +E K + + +
Sbjct: 233 KKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAK 278
>gnl|CDD|226246 COG3723, RecT, Recombinational DNA repair protein (RecE pathway)
[DNA replication, recombination, and repair].
Length = 276
Score = 24.8 bits (54), Expect = 8.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 43 ADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEED 89
DE +RR+ EE+ E + E E E ++ +EE E+ E+
Sbjct: 223 EDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEE 269
>gnl|CDD|178538 PLN02952, PLN02952, phosphoinositide phospholipase C.
Length = 599
Score = 25.0 bits (54), Expect = 8.8
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
+K+ +EE EE + E EQE + + +Q++
Sbjct: 282 KKKNNVSPSGRNSSEETEEAQTLESMLFEQEADSRSDSDQDDNKSGE 328
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 24.8 bits (54), Expect = 8.9
Identities = 15/72 (20%), Positives = 39/72 (54%)
Query: 24 ELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
+L ++ + ++ + + L + +K +R +E EE E+ +++ + E E ++E+E+ E +
Sbjct: 54 KLESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENE 113
Query: 84 EQEEEDQTNEER 95
E + + N
Sbjct: 114 ELQYLREYNLFD 125
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 25.0 bits (54), Expect = 8.9
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 41 RLADEQKRRKRKGEEEEENEENE----EEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
++A+ QKR K + E + + E ++ + + ++E + E+E +++E E Q E V
Sbjct: 274 QVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPV 333
Query: 97 GG 98
Sbjct: 334 AE 335
>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 858
Score = 24.8 bits (54), Expect = 9.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 58 ENEENEEEEEEEEEEEEQEEEEEEEK 83
+ EEN+ +E+ EE EEEE ++
Sbjct: 780 KAEENDLDEQLLLLPEELEEEETKKP 805
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 24.5 bits (52), Expect = 9.7
Identities = 24/41 (58%), Positives = 26/41 (63%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
EEEEE E EE EEE E EEE EEE E E+ EEE + E
Sbjct: 65 EEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPE 105
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 25.0 bits (55), Expect = 9.7
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 36 LRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTN 92
+R L +RR++ E+ + +E + EE+ EE + E+ +E E + E+
Sbjct: 297 VREAAELVLPHRRRRKPFEQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRG 353
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.298 0.122 0.299
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,439,946
Number of extensions: 537379
Number of successful extensions: 23101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11435
Number of HSP's successfully gapped: 4716
Length of query: 99
Length of database: 10,937,602
Length adjustment: 65
Effective length of query: 34
Effective length of database: 8,054,592
Effective search space: 273856128
Effective search space used: 273856128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 53 (24.0 bits)