RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17736
(99 letters)
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain
{Escherichia coli [TaxId: 562]}
Length = 263
Score = 33.4 bits (76), Expect = 0.002
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 1 MKYALLIVDSAMALYRTDYSGRGELSARQMHL-ARFLRMLLR 41
+++VDS AL GE+ M L AR + +R
Sbjct: 131 GAVDVIVVDSVAALT-PKAEIEGEIGDSHMGLAARMMSQAMR 171
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain
{Deinococcus radiodurans [TaxId: 1299]}
Length = 268
Score = 30.2 bits (68), Expect = 0.028
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 2 KYALLIVDSAMALY-RTDYSGRGELS---ARQMHLARFLRMLLRLADEQKR 48
+++VDS AL R + G S + +++ LR L + +
Sbjct: 135 AIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGT 185
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 26.9 bits (58), Expect = 0.49
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 47 KRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEE 88
K +E ++ +E+ ++ ++EE +E ++E
Sbjct: 323 VNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 26.5 bits (57), Expect = 0.56
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 59 NEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
N ++E ++ +E+ + + EE ++ +E
Sbjct: 329 NVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2,
mapkap2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 335
Score = 25.8 bits (56), Expect = 0.90
Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 25 LSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKE 84
++ + ++ ++ R +E++E E+ +EE + + E+ K
Sbjct: 264 MTITEFMNHPWIMQSTKVPQTPLHTSRVLKEDKERWEDVKEEMTSALATMR-VDYEQIKI 322
Query: 85 QEEEDQTNE 93
++ ED +N
Sbjct: 323 KKIEDASNP 331
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 25.4 bits (55), Expect = 1.2
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEER 95
G+E+ + E+ + +E E E E +EE++ + + + + +
Sbjct: 72 GQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
Score = 25.0 bits (54), Expect = 1.7
Identities = 10/49 (20%), Positives = 23/49 (46%)
Query: 46 QKRRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
++R + +E+ E + +E E + E +E+E+ + D E+
Sbjct: 64 EQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQ 112
Score = 23.8 bits (51), Expect = 4.9
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQ 90
K E+ + +E E E E ++EE+ + + E+E+
Sbjct: 77 KPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKG 115
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 25.2 bits (55), Expect = 1.4
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERV 96
E+ + ++ ++ EE+E ++ E EEE +E E + E
Sbjct: 4 NEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQ 46
Score = 24.4 bits (53), Expect = 2.4
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEE 94
+ E+ + ++ ++ EE+E + E EEE ++ E + E
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGE 43
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 24.9 bits (54), Expect = 1.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 53 GEEEEENEENEEEEEEEEEEEEQEEEEE 80
G +E E + E +EEEEE Q +E+
Sbjct: 42 GGQELEGAQALGPEVQEEEEEPQGDEDV 69
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
disjunctional) {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 368
Score = 25.3 bits (54), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 52 KGEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
+ EE NE++ E E +EQ + E+
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMER 33
Score = 24.5 bits (52), Expect = 3.3
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 49 RKRKGEEEEENEENEEEEEEEEEEEEQEEEE 79
R+R E NE+ E E +E+ Q E
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNME 32
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 24.9 bits (53), Expect = 1.9
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 67 EEEEEEEEQEEEEEEEK 83
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHHH 322
Score = 23.8 bits (50), Expect = 5.0
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 63 EEEEEEEEEEEEQEEE 78
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 23.8 bits (50), Expect = 5.2
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 64 EEEEEEEEEEEQEEEE 79
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 23.8 bits (50), Expect = 5.7
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 65 EEEEEEEEEEQEEEEE 80
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 23.4 bits (49), Expect = 6.1
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 66 EEEEEEEEEQEEEEEE 81
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 23.0 bits (48), Expect = 9.4
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 54 EEEEENEENEEEEEEE 69
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 113
Score = 23.7 bits (51), Expect = 3.7
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 69 EEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
EE Q+E E ++ EE+ Q + VG
Sbjct: 8 NEELRAQQEAEAAQRLSEEKAQASAISVG 36
Score = 22.9 bits (49), Expect = 6.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 62 NEEEEEEEEEEEEQEEEEEEEK 83
NEE ++E E Q EE+ +
Sbjct: 8 NEELRAQQEAEAAQRLSEEKAQ 29
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 23.5 bits (51), Expect = 5.0
Identities = 7/42 (16%), Positives = 22/42 (52%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
+ + E ++ +EE+ + ++E E+ ++ ++ER+
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIA 151
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 23.5 bits (51), Expect = 6.0
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 56 EEENEENEEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
+ + E+ ++ +E+++ E E+ EE + E E+VG
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVG 143
Score = 23.1 bits (50), Expect = 6.8
Identities = 6/28 (21%), Positives = 16/28 (57%)
Query: 45 EQKRRKRKGEEEEENEENEEEEEEEEEE 72
+ ++ ++K +E ++ E E+ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 23.1 bits (50), Expect = 7.4
Identities = 6/28 (21%), Positives = 18/28 (64%)
Query: 54 EEEEENEENEEEEEEEEEEEEQEEEEEE 81
+ ++E ++ +E+++ E+E+ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1,
MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 291
Score = 23.5 bits (49), Expect = 6.1
Identities = 5/34 (14%), Positives = 18/34 (52%)
Query: 40 LRLADEQKRRKRKGEEEEENEENEEEEEEEEEEE 73
+++AD +++R + + +E + E + ++
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKT 34
>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS)
{Pyrococcus abyssi [TaxId: 29292]}
Length = 210
Score = 23.3 bits (49), Expect = 6.4
Identities = 3/35 (8%), Positives = 8/35 (22%)
Query: 63 EEEEEEEEEEEEQEEEEEEEKEQEEEDQTNEERVG 97
+++ + E + E V
Sbjct: 153 TDDQIIYFILNYMAKGNPEGARILLDKYYKREDVI 187
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 23.1 bits (49), Expect = 7.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 42 LADEQKRRKRKGEEEEENEENEEEEEEEEEEEEQEE 77
L E + + +++E E+ ++ EEEE + E+E+
Sbjct: 215 LTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREK 250
>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
Thermoproteus tenax [TaxId: 2271]}
Length = 499
Score = 23.4 bits (49), Expect = 7.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 22 RGELSARQMHLARFLRMLLRLADEQKRRKR 51
RG SAR M L +L + AD +R
Sbjct: 64 RGRWSARDMPGTERLAVLRKAADIIERNLD 93
>d1xlma_ c.1.15.3 (A:) D-xylose isomerase {Arthrobacter, strain
b3728 [TaxId: 1663]}
Length = 393
Score = 23.0 bits (49), Expect = 8.3
Identities = 8/45 (17%), Positives = 17/45 (37%)
Query: 17 TDYSGRGELSARQMHLARFLRMLLRLADEQKRRKRKGEEEEENEE 61
++Y G +L+A + + ++ R E + NE
Sbjct: 141 SEYDGSKDLAAALDRMREGVDTAAGYIKDKGYNLRIALEPKPNEP 185
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 23.1 bits (48), Expect = 8.7
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 48 RRKRKGEEEEENEENEEEEEEEEEEEEQEEEEEEEK 83
R+ K E + + + ++ E ++E+ E +K
Sbjct: 312 IRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQK 347
Score = 23.1 bits (48), Expect = 9.9
Identities = 5/36 (13%), Positives = 17/36 (47%)
Query: 51 RKGEEEEENEENEEEEEEEEEEEEQEEEEEEEKEQE 86
+ + E + + + ++ E+ +EE+ + Q+
Sbjct: 312 IRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQK 347
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.298 0.122 0.299
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 355,102
Number of extensions: 17690
Number of successful extensions: 621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 246
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 47 (22.4 bits)