RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17737
(493 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.5 bits (130), Expect = 6e-08
Identities = 82/587 (13%), Positives = 170/587 (28%), Gaps = 198/587 (33%)
Query: 1 MTNNQSEYFDQLPEELKS------CNKVQNVL-GLTWDTDID-TLSIKHGELQCSGKLTK 52
+Q +Y D L + C VQ++ + +ID + K T
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-----TL 65
Query: 53 RL---LLSVYGSIYDVLGLFTPVVLPLKILIQSVWQRNLSW-DEELSTEDKITFM----- 103
RL LLS + + ++ V + N + + TE + M
Sbjct: 66 RLFWTLLSKQEEMV-------------QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 104 -----KLIEDIKLIHTVHIPRL---------IGNLIPGTQYELHG--------FSDASAT 141
+L D ++ ++ RL + L P + G +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 142 SYSM-------VIYL---KCITGNSVTSNLVFAKARIAP-----LSRPTLPRLEL----- 181
SY + + +L C + +V L +I P + +L +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 182 -LGALIAYRGLKFVGESLKVKDIKYYLWIDSQIVIHWILGNKVLPT----FINNRVKEIK 236
L L+ + + L V + +++ + L K+L T + + +
Sbjct: 233 ELRRLLKSKPYE---NCLLVLL---NVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 237 NRSFKLDVHYVP-------------TDMNPADI---ACRGEKLS------SLQNN-ETWW 273
LD H + D P D+ S+++ TW
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW- 344
Query: 274 HGPKWLCQSEGHWPQWSFTDEISPQTEVSMDNALSVPAVKQLSKPLARKPIPVDHEKFNS 333
+W D+++ E S++ L +++ L+ +
Sbjct: 345 ----------DNWKH-VNCDKLTTIIESSLNV-LEPAEYRKMFDRLS---V--------- 380
Query: 334 FNKLVNVTCYVL-----------------KFIRLC---RRQKENKGNISIIEYEESKLSW 373
F ++ +L K + ++ KE+ ISI
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--ISI---------- 428
Query: 374 IKFAQHQKFASTMQELKQGHKDQLSQ-QLGLVLDENDILRCKGRFVELKVDGKSCFPMLL 432
+ + + ++ H+ + + D +D + +D
Sbjct: 429 --PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD-------LIPPYLDQYFY----- 474
Query: 433 PRGNHISKIIVNDIHTSGYHTGDKESKKLSNVARGYYLDGNHLERRV 479
+HI G+H + E + + R +LD LE+++
Sbjct: 475 ---SHI-----------GHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.7 bits (126), Expect = 2e-07
Identities = 85/536 (15%), Positives = 155/536 (28%), Gaps = 197/536 (36%)
Query: 37 LSIKHGELQCSGKLTKRLLLSVYGSIYDVLGLFTPVVLP---LKILIQSVWQRNLSWDEE 93
L++ HG L+ L V + + F L KIL + + D+E
Sbjct: 9 LTLSHGSLEHV--------LLVPTASF-----FIASQLQEQFNKILPEP--TEGFAADDE 53
Query: 94 LSTEDKIT--FM----KLIEDIKLIHTVHIPRLI----------GNLIPGTQYELHGF-- 135
+T ++ F+ L+E K+ + L GN ++H
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-------DIHALAA 106
Query: 136 -----SDASATSYSMVI--YLK-CITGNSV-----TSNLVFA----KARIAPL------S 172
+D + +I Y+ I S L A A++ + +
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 173 RPTLPRLELLGALIAYRGL-----KFVGESLK------VKDIKYYLW-IDSQIVIHWILG 220
L L Y L KF E+L + K + ++ ++ W+
Sbjct: 167 DDYFEELRDLYQ--TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN---ILEWLEN 221
Query: 221 NKVLPT---FINNRVKEIKNRSFKL-----DVHYVPT----DMNPADIACRGEKLSSLQN 268
P ++ + S L HYV T P ++ + +
Sbjct: 222 PSNTPDKDYLLSIPI------SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 269 N----------ETW---------------WHGPKWLCQSEGHWPQWSFTDEISPQTEVSM 303
++W + G + +P S I E S+
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIG----VRCYEAYPNTSLPPSI---LEDSL 328
Query: 304 DNALSVP----AVKQLSKPLARKPIPVDHEKFNSF---NK-----LVN-VTCYVL----- 345
+N VP ++ L++ + + K NS K LVN V+
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYV----NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 346 ---KFIRLCRRQKENKGNISIIEYEESKLSWIKFAQHQKFASTMQELKQG---HKDQLSQ 399
R+ K G ++S+ I F++ +K + + L H L
Sbjct: 385 SLYGLNLTLRKAKAPSGL------DQSR---IPFSE-RKLKFSNRFLPVASPFHSHLLVP 434
Query: 400 QLGLVLDENDILRCKGRFVELKVDGKSCFPMLLPRGNHISKIIVNDIHTSGYHTGD 455
L+ D+++ + + K +I V Y T D
Sbjct: 435 ASDLINK--DLVK-----NNVSFNAKDI------------QIPV-------YDTFD 464
Score = 43.1 bits (101), Expect = 2e-04
Identities = 27/142 (19%), Positives = 43/142 (30%), Gaps = 32/142 (22%)
Query: 372 SWIKFAQHQ-KFASTMQELKQG--HKDQLSQQLGLVLDENDILRCKGRF---VELKVDGK 425
S+ +Q Q +F + E +G D+ + LV G+F V V+
Sbjct: 26 SFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV----------GKFLGYVSSLVEPS 75
Query: 426 SC--FPMLLPRG-NHISKIIV--NDIHT---SGYHTGDKESKKLSNVARGYYLDGNHLER 477
F +L + NDIH D K + + Y + +
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI-TARIMAK 134
Query: 478 RVLL---GSRLL----SGWVRL 492
R S L G +L
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQL 156
Score = 36.6 bits (84), Expect = 0.023
Identities = 67/361 (18%), Positives = 108/361 (29%), Gaps = 135/361 (37%)
Query: 4 NQSEYFDQLPEELKSCNKVQNVLGLTWDTDIDTLSIKHGELQCSGKLTKRLLLS------ 57
N +YF+ EL+ L T+ + L ++ S + L+ +
Sbjct: 165 NTDDYFE----ELRD-------LYQTYHVLVGDL------IKFSAETLSELIRTTLDAEK 207
Query: 58 VYGSIYDVLG-LFTPVVLPLKILIQSVWQRNLSWDEE-LSTEDKITF-MKLIEDIKLIHT 114
V+ ++L L P P D++ L + I LI I+L H
Sbjct: 208 VFTQGLNILEWLENPSNTP---------------DKDYLLS---IPISCPLIGVIQLAHY 249
Query: 115 VHIPRLIGNLIPGTQYELHGFSDASATSYSMVIYLKCITGNSVTSNLVFAKARIAP-LSR 173
V +L+G PG + YLK TG + LV A A IA S
Sbjct: 250 VVTAKLLG-FTPG----------------ELRSYLKGATG--HSQGLVTAVA-IAETDSW 289
Query: 174 PTLPRLELLGALIAYRGLKFVGESLKVKDIKYYLWI--DSQIVIHWILGNKVLPTFINNR 231
+ F K I +I N LP I
Sbjct: 290 ES-----------------FFVSVRKA--ITVLFFIGVRCYEA----YPNTSLPPSI--- 323
Query: 232 VKEIKNRSFKLDVHYVPTDMNPADIACRGEKLSSLQNNETWWHGPKWLCQSEGHWPQWSF 291
+++ + VP+ M ++ +Q ++ ++ H P
Sbjct: 324 LEDSLENNEG-----VPSPM----LSISNLTQEQVQ---------DYVNKTNSHLPA-GK 364
Query: 292 TDEIS-------------PQTEVSMDNAL---SVPA-VKQLSKPLA-RKPIPVDHEKFNS 333
EIS PQ+ ++ L P+ + Q P + RK N
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS-----NR 419
Query: 334 F 334
F
Sbjct: 420 F 420
Score = 28.5 bits (63), Expect = 7.8
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 30/102 (29%)
Query: 391 QGHKDQLSQQLGLVLDE-------NDIL-RCKGRFVELKVDGKSCFPMLLPRGNHISKII 442
QG SQ+ G+ +D D+ R F + G S I I+
Sbjct: 1624 QG-----SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTY--GFS-----------ILDIV 1665
Query: 443 VNDIHTSGYHTGDKESKKL----SNVARGYYLDGNHLERRVL 480
+N+ H G ++ K++ S + +DG ++
Sbjct: 1666 INNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF 1707
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of
RNA/DNA hybrid; 1.40A {Uncultured organism}
Length = 140
Score = 31.4 bits (72), Expect = 0.30
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 178 RLELLGALIAYRGLKFVGESLKVKDIKYYLWIDSQIVIHWILGN-KV 223
E + A L+ G+ L +++ + DS++++ + G KV
Sbjct: 47 VAEYEALIRALEDLQMFGDKLVDMEVEVRM--DSELIVRQMQGVYKV 91
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 30.4 bits (69), Expect = 0.40
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 30/92 (32%)
Query: 75 PLKILIQSVWQR--NLSWDE--------------ELSTEDKITFMKLIEDIK-LIHTVHI 117
P ++ +L W + E+ E K D + L +TV
Sbjct: 11 PASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVK- 69
Query: 118 PRLIGNLIPGTQYE-------LHGFSDASATS 142
NL T+Y+ G S+ S
Sbjct: 70 -----NLRRSTKYKFKVIAYNSEGKSNPSEVV 96
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 29.6 bits (67), Expect = 0.82
Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 27/77 (35%)
Query: 87 NLSWDE--------------ELSTEDKITFMKLIEDIKLIHTVHIPRLIGNLIPGTQYEL 132
L W E+S +K ++ + ++ TV +L+PG Y
Sbjct: 27 QLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTV------SSLLPGKTYSF 80
Query: 133 -------HGFSDASATS 142
GF S
Sbjct: 81 RLRAANKMGFGPFSEKC 97
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 30.2 bits (68), Expect = 1.7
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 120 LIGNLIPGTQYEL-------HGFSDASATSYSM 145
++ +L YE+ G+S+ + +SM
Sbjct: 352 ILEHLQWTMGYEVQITAANRLGYSEPTVYEFSM 384
>1zlp_A PSR132, petal death protein; TIM-barrel, helix
swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate
lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus
caryophyllus}
Length = 318
Score = 29.2 bits (66), Expect = 3.2
Identities = 7/47 (14%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 103 MKLIEDIKLIH-TVHIPRLIGNLIPGTQYELHGFSDASATSYSMVIY 148
++++K + R+ N+I G + LH + + ++ +
Sbjct: 211 PANVDELKEVSAKTKGLRIA-NMIEGGKTPLHTPEEFKEMGFHLIAH 256
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 28.1 bits (62), Expect = 4.6
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 258 CRGEKLSSLQNNETWWHGPKWLCQSEGHWPQWSFTDEISPQTE 300
+GE+L L+ + WW EG P S + E
Sbjct: 32 EKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAKANSLEPE 74
>1gsl_A Griffonia simplicifolia lectin 4; glycoprotein, manganese; HET: FUC
GAL MAG NAG BMA; 2.00A {Griffonia simplicifolia} SCOP:
b.29.1.1 PDB: 1lec_A* 1led_A*
Length = 243
Score = 28.6 bits (63), Expect = 4.7
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 398 SQQLGLVLDENDILRCKGRFVELKVDGKSCFPMLLPRGNHISKIIVND---IHTSGYHTG 454
LGL E K + V ++ D P HI I VN + T+ +
Sbjct: 106 GGFLGLFRHETAADPSKNQVVAVEFDTWINKDWNDPPYPHIG-IDVNSIVSVATTRWEND 164
Query: 455 DKESKKLSNVARGYYLDGNHLE 476
D ++ Y L
Sbjct: 165 DAYGSSIATAHITYDARSKILT 186
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 27.3 bits (61), Expect = 4.8
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 28/91 (30%)
Query: 75 PLKILIQSVWQRN--LSWDE--------------ELSTEDKITFMKLIEDIKLIHTVHIP 118
P + I+ VW N L+W + + + + + +IE
Sbjct: 21 PQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSAT--- 77
Query: 119 RLIGNLIPGTQYEL-------HGFSDASATS 142
I L+ G +Y G S+ + +
Sbjct: 78 --ITELVIGNEYYFRVFSENMCGLSEDATMT 106
>3bd9_A Heparan sulfate glucosamine 3-O-sulfotransferase 5; heparan sulfate
biosynthesis, substrate specificity, glycoprotein, golgi
apparatus, membrane; HET: A3P; 2.30A {Homo sapiens}
Length = 280
Score = 28.3 bits (62), Expect = 5.2
Identities = 22/154 (14%), Positives = 45/154 (29%), Gaps = 9/154 (5%)
Query: 255 DIACRGEKLSSLQNNETWWHGPKWLCQSEGHWPQWSFTDEISPQTEVSMDNALSVPAVKQ 314
+ +++ N+E + G +W + T E SP ++ + + +
Sbjct: 49 AVVKASQEIHFFDNDENYGKGIEWYRKKMPFSYPQQITIEKSPAYFITEEVPERIYKMNS 108
Query: 315 LSKPLARKPIPVD-----HEKFNSFNKLVNVTCYVLKFIRLCRRQKENKGNISIIE---Y 366
K L P + + + N T Y + + + E + Y
Sbjct: 109 SIKLLIIVREPTTRAISDYTQVLEGKERKNKTYYKFEKLAIDPNTCEVNTKYKAVRTSIY 168
Query: 367 EESKLSWIK-FAQHQKFASTMQELKQGHKDQLSQ 399
+ W+K F Q L +L
Sbjct: 169 TKHLERWLKYFPIEQFHVVDGDRLITEPLPELQL 202
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 28.2 bits (63), Expect = 5.9
Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 29/91 (31%)
Query: 75 PLKILIQSVWQR--NLSWDE--------------ELSTEDKITFMKLIEDIKLIHTVHIP 118
P + + V + NL+W E E ++++ + + +TV
Sbjct: 202 PRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTV--- 258
Query: 119 RLIGNLIPGTQYEL-------HGFSDASATS 142
NL T Y+ G S S S
Sbjct: 259 ---INLFGKTSYQFRVIAENKFGLSKPSEPS 286
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 27.9 bits (62), Expect = 6.9
Identities = 15/91 (16%), Positives = 23/91 (25%), Gaps = 24/91 (26%)
Query: 75 PLKILIQSVWQRN--LSWDE--------------ELSTEDKITFMKLIEDIKLIHTVHIP 118
I + + +DE E + + D K ++
Sbjct: 116 SPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK-EASMEGI 174
Query: 119 RLIGNLIPGTQYE-------LHGFSDASATS 142
I L P T Y G + SA S
Sbjct: 175 VTIVGLKPETTYAVRLAALNGKGLGEISAAS 205
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase,
IPNV; 3.80A {Infectious pancreatic necrosis virus}
Length = 770
Score = 28.1 bits (61), Expect = 7.2
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 2/80 (2%)
Query: 47 SGKLTKRLLLSVYGSIYDVLGLFTPVVLPLKILIQSVWQRNLSWDEELSTEDKITFMKLI 106
GK + LL + +F PV+ +++ + + + L +++
Sbjct: 552 PGKAVELDLLGWSAIYSRQMEMFVPVLENERLIASAAYPKGLENKALARKPGAEIAYQIV 611
Query: 107 --EDIKLIHTVHIPRLIGNL 124
E I+L+ + P L
Sbjct: 612 RYEAIRLVGGWNNPLLETAA 631
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 28.0 bits (62), Expect = 8.5
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 264 SSLQNNETWWHGPKWLCQSEGHWPQWS 290
L++NETWW+ P + HW ++
Sbjct: 3 RDLRDNETWWYNPSIVVHP--HWREFD 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.416
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,494,630
Number of extensions: 437494
Number of successful extensions: 886
Number of sequences better than 10.0: 1
Number of HSP's gapped: 877
Number of HSP's successfully gapped: 20
Length of query: 493
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 396
Effective length of database: 3,993,456
Effective search space: 1581408576
Effective search space used: 1581408576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)