RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17737
         (493 letters)



>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus
           halodurans [TaxId: 86665]}
          Length = 132

 Score = 28.3 bits (63), Expect = 1.0
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 11/69 (15%)

Query: 170 PLSRPTLPRLELLGALIAYRGLKFVGESLKVKDIKYYLWIDSQIVIHWILGNKVLPTFIN 229
           P+   T    E L  +            LK ++ +  ++ +SQ  I W+   K      +
Sbjct: 38  PIPIGTNNMGEFLAIVHGL-------RYLKERNSRKPIYSNSQTAIKWVKDKKA----KS 86

Query: 230 NRVKEIKNR 238
             V+  +  
Sbjct: 87  TLVRNEETA 95


>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable
           domain, VL-lambda {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 110

 Score = 25.5 bits (55), Expect = 7.5
 Identities = 6/34 (17%), Positives = 9/34 (26%)

Query: 256 IACRGEKLSSLQNNETWWHGPKWLCQSEGHWPQW 289
           + CR    +   +N   W   K      G     
Sbjct: 20  LTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGT 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0570    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,885,969
Number of extensions: 88286
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 3
Length of query: 493
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 404
Effective length of database: 1,185,626
Effective search space: 478992904
Effective search space used: 478992904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)