BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17738
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZBX|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (Wild Type) With Imidazole Bound
Length = 412
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 221 PDRNITKMFSLDPKSSIFACELYAI-YAALEYLHHPNNNTVENYVIISDSQAALQAISNI 279
P ++ F+L P S+ C L + YA E+ + V++ +D+Q+AL A +++
Sbjct: 142 PTADLVSQFAL-PVPSMVICRLLGVPYADHEFFQDASKRLVQS----TDAQSALTARNDL 196
Query: 280 YTIQNQLITNIQTLNQGGFKCEI----LANTKTERLHMV 314
+ LIT QT G + LAN + +R ++
Sbjct: 197 AGYLDGLITQFQTEPGAGLVGALVADQLANGEIDREELI 235
>pdb|2ZBY|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84a Mutant)
pdb|2ZBZ|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84a Mutant) In Complex With
1,25-Dihydroxyvitamin D3
Length = 412
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 221 PDRNITKMFSLDPKSSIFACELYAI-YAALEYLHHPNNNTVENYVIISDSQAALQAISNI 279
P ++ F+L P S+ C L + YA E+ + V++ +D+Q+AL A +++
Sbjct: 142 PTADLVSQFAL-PVPSMVICRLLGVPYADHEFFQDASKRLVQS----TDAQSALTARNDL 196
Query: 280 YTIQNQLITNIQTLNQGGFKCEI----LANTKTERLHMV 314
+ LIT QT G + LAN + +R ++
Sbjct: 197 AGYLDGLITQFQTEPGAGLVGALVADQLANGEIDREELI 235
>pdb|3CV9|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R73aR84A MUTANT) IN COMPLEX WITH 1ALPHA,25-
Dihydroxyvitamin D3
Length = 412
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 221 PDRNITKMFSLDPKSSIFACELYAI-YAALEYLHHPNNNTVENYVIISDSQAALQAISNI 279
P ++ F+L P S+ C L + YA E+ + V++ +D+Q+AL A +++
Sbjct: 142 PTADLVSQFAL-PVPSMVICRLLGVPYADHEFFQDASKRLVQS----TDAQSALTARNDL 196
Query: 280 YTIQNQLITNIQTLNQGGFKCEI----LANTKTERLHMV 314
+ LIT QT G + LAN + +R ++
Sbjct: 197 AGYLDGLITQFQTEPGAGLVGALVADQLANGEIDREELI 235
>pdb|3CV8|A Chain A, Crystal Structure Of Vitamin D Hydroxylase Cytochrome P450
105a1 (R84f Mutant)
Length = 412
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 221 PDRNITKMFSLDPKSSIFACELYAI-YAALEYLHHPNNNTVENYVIISDSQAALQAISNI 279
P ++ F+L P S+ C L + YA E+ + V++ +D+Q+AL A +++
Sbjct: 142 PTADLVSQFAL-PVPSMVICRLLGVPYADHEFFQDASKRLVQS----TDAQSALTARNDL 196
Query: 280 YTIQNQLITNIQTLNQGGFKCEI----LANTKTERLHMV 314
+ LIT QT G + LAN + +R ++
Sbjct: 197 AGYLDGLITQFQTEPGAGLVGALVADQLANGEIDREELI 235
>pdb|3E2V|A Chain A, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
pdb|3E2V|B Chain B, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
Length = 401
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 80 PIQALHLETNEPPLEIRRKILTFNYAAKVTSVPQHPCYKLLMFPKYVQNYKNKKINTINV 139
P + L LET+ P EI+R +F Y AK V + +P + KNK + +N
Sbjct: 294 PTERLLLETDAPWCEIKRTHASFQYLAKYQEV------RDFEYPAFKSVKKNKLADKLNA 347
>pdb|3UMH|A Chain A, X-Ray Structure Of The E2 Domain Of The Human Amyloid
Precursor Protein (App) In Complex With Cadmium
pdb|3UMI|A Chain A, X-Ray Structure Of The E2 Domain Of The Human Amyloid
Precursor Protein (App) In Complex With Zinc
pdb|3UMK|A Chain A, X-Ray Structure Of The E2 Domain Of The Human Amyloid
Precursor Protein (App) In Complex With Copper
Length = 211
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 85 HLETNEPPLEIRRKILTFNYAAKVTSVPQHPCYKLLMFPKYVQNYKNKKINTINVF 140
H+ E L RR++ NY + +VP P + M KYV+ + + +T+ F
Sbjct: 89 HMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF 144
>pdb|3NYL|A Chain A, The X-Ray Structure Of An Antiparallel Dimer Of The Human
Amyloid Precursor Protein E2 Domain
Length = 210
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 85 HLETNEPPLEIRRKILTFNYAAKVTSVPQHPCYKLLMFPKYVQNYKNKKINTINVF 140
H+ E L RR++ NY + +VP P + M KYV+ + + +T+ F
Sbjct: 97 HMARVEAMLNDRRRLALENYITALQAVPPRPRHVFNMLKKYVRAEQKDRQHTLKHF 152
>pdb|3Q0Q|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio2 In Complex With P38alpha Nrea
pdb|3Q0R|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio2 In Complex With P38alpha Nreb
pdb|3Q0S|A Chain A, Crystal Structure Of The Pumilio-Homology Domain From
Human Pumilio2 In Complex With Erk2 Nre
Length = 351
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 26 CSAEQVMELFGDLYLHTIDIIK----------VLNPDASENNLKILNPIQNQCLRLATGA 75
C+AEQ + + +L+ HT +++ VL E+ KI++ I+ + L L+
Sbjct: 192 CTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHK 251
Query: 76 FCTTPIQ 82
F + ++
Sbjct: 252 FASNVVE 258
>pdb|3GVO|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf
Domain
pdb|3GVT|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf
Domain
pdb|3GVT|B Chain B, Structure And Rna Binding Of The Mouse Pumilio-2 Puf
Domain
Length = 351
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 26 CSAEQVMELFGDLYLHTIDIIK----------VLNPDASENNLKILNPIQNQCLRLATGA 75
C+AEQ + + +L+ HT +++ VL E+ KI++ I+ + L L+
Sbjct: 192 CTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHK 251
Query: 76 FCTTPIQ 82
F + ++
Sbjct: 252 FASNVVE 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,188,588
Number of Sequences: 62578
Number of extensions: 302592
Number of successful extensions: 502
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 13
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)