BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17738
         (316 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A7IJ80|RSMA_XANP2 Ribosomal RNA small subunit methyltransferase A OS=Xanthobacter
           autotrophicus (strain ATCC BAA-1158 / Py2) GN=rsmA PE=3
           SV=1
          Length = 288

 Score = 37.7 bits (86), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 9/96 (9%)

Query: 151 IHTLTHPPPPPWTLDTPDLNFQLHIFTKKITSSPIIKS-NFLAILQNYETHVRIYTDGSK 209
           I  L+  P PPW   +  L FQ  +  ++I ++P  K+   LA+L  + T  RI  D   
Sbjct: 134 IGWLSTDPWPPW-FSSLTLMFQKEV-AERIVAAPGSKAYGRLAVLAGWRTTARIAFD--- 188

Query: 210 DEENAGCAFVIPDRNITKMFSLDPKSSIFACELYAI 245
               A  AFV P +  + +  L P+S    C L A+
Sbjct: 189 ---VAPSAFVPPPKVTSSVVHLVPRSEPLPCALSAL 221


>sp|P38671|RPOM_NEUCR DNA-directed RNA polymerase, mitochondrial OS=Neurospora crassa
           (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
           / FGSC 987) GN=cyt-5 PE=3 SV=2
          Length = 1423

 Score = 35.0 bits (79), Expect = 0.67,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 27/116 (23%)

Query: 106 AKVTSVPQHPCYKLLM------FPKYVQNYKNKKINTI-------NVFLEEKFPLFKKIH 152
           AK+T V + P  K L+      F   +Q  K KKI TI        + + E  P F   H
Sbjct: 568 AKITLVREDPVTKTLITQNQPAFSHVMQLRKGKKIGTIIPNKAVVELLVREPVPDFLARH 627

Query: 153 TLTHPPPPPWTLDTPDLNFQLHIFTKKITSSPIIKSNFLAILQNYETHVRIYTDGS 208
                PP PW      ++F+   + +  T +P+++      L+N E   R+YT+ +
Sbjct: 628 LPMVTPPDPW------VSFEKGAYLE--TKTPVLR------LKNGEREQRLYTEAA 669


>sp|B1ANS9|WDR64_HUMAN WD repeat-containing protein 64 OS=Homo sapiens GN=WDR64 PE=2 SV=1
          Length = 1081

 Score = 32.7 bits (73), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 7/136 (5%)

Query: 81  IQALHLETNEPP-LEIRRKILTFNYAAKVTSVPQHPCYKLLMFPKYVQNYKNKKINTINV 139
           +Q  H     P  ++I   I   N+   +T       Y L    +  +   +     INV
Sbjct: 401 LQVFHDSQGGPGDMQIYSMIYDANHGMLITGSSVMDMYPLTRMIQDTKQVPHTHEREINV 460

Query: 140 FLEEKFPLFKKIHTL-THPPPPPWTLDTPDLNFQL---HIFTKKITSSPIIKSNFLAILQ 195
            L  K+  F ++ T+ +      W L+T    +Q+   H F  ++TS+ + +S FL    
Sbjct: 461 MLYNKY--FHQVLTICSESIIRVWELETGLQVYQILEPHGFNTEVTSAAVDESGFLFATG 518

Query: 196 NYETHVRIYTDGSKDE 211
            Y   VRI+  GS  E
Sbjct: 519 AYNGTVRIWDFGSGQE 534


>sp|B5ZXS0|SYFA_RHILW Phenylalanine--tRNA ligase alpha subunit OS=Rhizobium leguminosarum
           bv. trifolii (strain WSM2304) GN=pheS PE=3 SV=1
          Length = 360

 Score = 32.3 bits (72), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 37/161 (22%)

Query: 78  TTPIQALHLETNEPPLEIRRKILTFNYAAKVTSVPQHPCYKLLMFPKYVQNYKNKKINTI 137
           T+P+Q   +ET +PP+ I     T+   +  T  P        MF +      +KK N  
Sbjct: 177 TSPVQVRTMETQKPPIRIIIPGKTYRQDSDATHSP--------MFHQVEGLVIDKKANVA 228

Query: 138 NV--FLEEKFPLFKKIHTLT---HPPPPPWTLDTPDLNFQLHIFTKKITSSPIIKSNFLA 192
           N+   LEE    F ++ ++T    P   P+T    + +F++ I   +  S PI+K     
Sbjct: 229 NIRWVLEEFCKTFFEVDSVTMRFRPSFFPFT----EPSFEVDIQCDR--SGPIVK----- 277

Query: 193 ILQNYETHVRIYTDGSKDEENAGCAFVIPDRNITKMFSLDP 233
                      + +G+   E  GC  V P  N+ +   LDP
Sbjct: 278 -----------FGEGTDWMEILGCGMVHP--NVLRYGGLDP 305


>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
           SV=1
          Length = 730

 Score = 32.3 bits (72), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 248 ALEYLHHPNNNT----VENYVIISDSQAALQAISNIYTIQNQLITNIQTLNQGGFKCEIL 303
           ALE LH   N      V +Y I+ D    L  I   Y + N++  +    N  GF C I 
Sbjct: 408 ALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLIS 467

Query: 304 ANTKTERL 311
           A  K  R+
Sbjct: 468 AFCKEHRI 475


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,423,570
Number of Sequences: 539616
Number of extensions: 4664779
Number of successful extensions: 11238
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11238
Number of HSP's gapped (non-prelim): 8
length of query: 316
length of database: 191,569,459
effective HSP length: 117
effective length of query: 199
effective length of database: 128,434,387
effective search space: 25558443013
effective search space used: 25558443013
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)