Query psy17738
Match_columns 316
No_of_seqs 204 out of 1493
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 21:41:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08719 ribonuclease H; Revie 99.8 1.6E-19 3.6E-24 149.8 12.6 110 199-315 3-144 (147)
2 COG0328 RnhA Ribonuclease HI [ 99.8 2.5E-19 5.3E-24 147.8 12.6 112 200-315 3-142 (154)
3 PRK06548 ribonuclease H; Provi 99.8 2.2E-19 4.7E-24 150.5 12.3 112 198-315 3-139 (161)
4 PRK00203 rnhA ribonuclease H; 99.8 2.7E-18 5.8E-23 143.4 12.8 110 200-314 3-138 (150)
5 PF00075 RNase_H: RNase H; In 99.8 1.9E-18 4.2E-23 140.4 9.5 109 199-315 2-130 (132)
6 PRK13907 rnhA ribonuclease H; 99.6 2.1E-15 4.5E-20 122.5 11.6 111 201-315 2-124 (128)
7 cd06222 RnaseH RNase H (RNase 99.6 4.2E-14 9.1E-19 112.1 12.6 111 202-315 1-129 (130)
8 KOG3752|consensus 99.6 1.6E-14 3.5E-19 133.0 11.0 114 198-314 210-361 (371)
9 PRK07708 hypothetical protein; 99.6 3.3E-14 7.1E-19 125.3 11.9 119 196-315 69-205 (219)
10 PRK07238 bifunctional RNase H/ 99.4 2.9E-12 6.2E-17 122.4 12.0 111 200-314 2-128 (372)
11 PF13456 RVT_3: Reverse transc 98.9 7.9E-09 1.7E-13 77.2 6.9 76 237-315 1-84 (87)
12 PF05380 Peptidase_A17: Pao re 87.4 1.8 3.8E-05 36.2 6.1 67 199-267 80-159 (159)
13 PF00336 DNA_pol_viral_C: DNA 72.1 5.2 0.00011 34.8 3.8 62 199-274 93-154 (245)
14 PF05830 NodZ: Nodulation prot 59.7 21 0.00046 33.1 5.5 67 212-281 166-235 (321)
15 PF09004 DUF1891: Domain of un 45.9 3.9 8.5E-05 26.2 -1.1 33 7-41 9-42 (42)
16 PRK11376 hlyE hemolysin E; Pro 30.2 27 0.00059 30.8 1.2 42 2-50 49-91 (303)
17 COG0295 Cdd Cytidine deaminase 23.7 2.6E+02 0.0056 22.8 5.7 55 211-269 25-81 (134)
18 COG3341 Predicted double-stran 23.6 2.6E+02 0.0056 24.7 6.0 77 201-280 66-153 (225)
19 COG0590 CumB Cytosine/adenosin 23.5 3.1E+02 0.0066 22.6 6.4 44 211-254 27-73 (152)
No 1
>PRK08719 ribonuclease H; Reviewed
Probab=99.82 E-value=1.6e-19 Score=149.78 Aligned_cols=110 Identities=23% Similarity=0.319 Sum_probs=83.5
Q ss_pred CceEEEEcCCCCC--C---CceEEEEEeCC--Ce--eEEEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcCh
Q psy17738 199 THVRIYTDGSKDE--E---NAGCAFVIPDR--NI--TKMFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDS 269 (316)
Q Consensus 199 ~~~~iytDGS~~~--~---~~G~a~~~~~~--~~--~~~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS 269 (316)
..+.||||||+.. + ..|+|+++... .. ..+.++....||++||+.|+..||+.+.+. ..|+|||
T Consensus 3 ~~~~iYtDGs~~~n~~~~~~~G~G~vv~~~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~aL~~~~~~-------~~i~tDS 75 (147)
T PRK08719 3 ASYSIYIDGAAPNNQHGCVRGGIGLVVYDEAGEIVDEQSITVNRYTDNAELELLALIEALEYARDG-------DVIYSDS 75 (147)
T ss_pred ceEEEEEecccCCCCCCCCCcEEEEEEEeCCCCeeEEEEecCCCCccHHHHHHHHHHHHHHHcCCC-------CEEEech
Confidence 4689999999973 2 35888887543 32 234446666899999999999999998642 3799999
Q ss_pred HHHHHHH--------hcccCCch-------HHHHHHHHHHhCC--------CCCCCcccHHHHHhhhhc
Q psy17738 270 QAALQAI--------SNIYTIQN-------QLITNIQTLNQGG--------FKCEILANTKTERLHMVL 315 (316)
Q Consensus 270 ~~ai~~i--------~~~~~~s~-------~i~~~~~~l~~~~--------~H~gi~gNe~AD~LAk~~ 315 (316)
++++++| .+.|..++ ++++.+..+.+.. +|+|++|||.||+||+.+
T Consensus 76 ~yvi~~i~~~~~~W~~~~w~~s~g~~v~n~dl~~~i~~l~~~~~i~~~~VkgH~g~~~Ne~aD~lA~~a 144 (147)
T PRK08719 76 DYCVRGFNEWLDTWKQKGWRKSDKKPVANRDLWQQVDELRARKYVEVEKVTAHSGIEGNEAADMLAQAA 144 (147)
T ss_pred HHHHHHHHHHHHHHHhCCcccCCCcccccHHHHHHHHHHhCCCcEEEEEecCCCCChhHHHHHHHHHHH
Confidence 9999999 44554332 2556677666543 899999999999999975
No 2
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.81 E-value=2.5e-19 Score=147.84 Aligned_cols=112 Identities=21% Similarity=0.204 Sum_probs=89.9
Q ss_pred ceEEEEcCCCC--CCCceEEEEEeCCCeeE--EEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHHH
Q psy17738 200 HVRIYTDGSKD--EENAGCAFVIPDRNITK--MFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQA 275 (316)
Q Consensus 200 ~~~iytDGS~~--~~~~G~a~~~~~~~~~~--~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~~ 275 (316)
.+.||||||+. +|..|+|+|+..+...+ +.... .+||++||++|++.||+.+.+.. ...|.|+|||+++++.
T Consensus 3 ~v~if~DGa~~gNpG~gG~g~vl~~~~~~~~~s~~~~-~tTNNraEl~A~i~AL~~l~~~~---~~~v~l~tDS~yv~~~ 78 (154)
T COG0328 3 KVEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEG-RTTNNRAELRALIEALEALKELG---ACEVTLYTDSKYVVEG 78 (154)
T ss_pred ceEEEecCccCCCCCCceEEEEEEcCCceEEEeeeee-cccChHHHHHHHHHHHHHHHhcC---CceEEEEecHHHHHHH
Confidence 58999999998 68899999987544333 33344 89999999999999999998755 8999999999999999
Q ss_pred Hhcc--------cCCc------h-HHHHHHHHHHhCC---------CCCCCcccHHHHHhhhhc
Q psy17738 276 ISNI--------YTIQ------N-QLITNIQTLNQGG---------FKCEILANTKTERLHMVL 315 (316)
Q Consensus 276 i~~~--------~~~s------~-~i~~~~~~l~~~~---------~H~gi~gNe~AD~LAk~~ 315 (316)
|..+ |..+ + ++++.+.++.+.. ||.|.++||.||+||+.+
T Consensus 79 i~~w~~~w~~~~w~~~~~~pvkn~dl~~~~~~~~~~~~~v~~~WVkgH~g~~~NeraD~LA~~~ 142 (154)
T COG0328 79 ITRWIVKWKKNGWKTADKKPVKNKDLWEELDELLKRHELVFWEWVKGHAGHPENERADQLAREA 142 (154)
T ss_pred HHHHHhhccccCccccccCccccHHHHHHHHHHHhhCCeEEEEEeeCCCCChHHHHHHHHHHHH
Confidence 9944 1111 1 3677777776653 799999999999999864
No 3
>PRK06548 ribonuclease H; Provisional
Probab=99.81 E-value=2.2e-19 Score=150.53 Aligned_cols=112 Identities=18% Similarity=0.186 Sum_probs=85.1
Q ss_pred CCceEEEEcCCCC--CCCceEEEEEeCCCeeEEEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHHH
Q psy17738 198 ETHVRIYTDGSKD--EENAGCAFVIPDRNITKMFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQA 275 (316)
Q Consensus 198 ~~~~~iytDGS~~--~~~~G~a~~~~~~~~~~~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~~ 275 (316)
+..+.||||||+. +|..|+|+++.+... .. .-....||+.|||+|++.||+.+... ..+|.|+|||++++++
T Consensus 3 ~~~~~IytDGa~~gnpg~~G~g~~~~~~~~-~~-g~~~~~TNnraEl~Aii~aL~~~~~~----~~~v~I~TDS~yvi~~ 76 (161)
T PRK06548 3 NNEIIAATDGSSLANPGPSGWAWYVDENTW-DS-GGWDIATNNIAELTAVRELLIATRHT----DRPILILSDSKYVINS 76 (161)
T ss_pred CCEEEEEEeeccCCCCCceEEEEEEeCCcE-Ec-cCCCCCCHHHHHHHHHHHHHHhhhcC----CceEEEEeChHHHHHH
Confidence 3458999999998 477899998854322 11 11246899999999999999866432 3579999999999999
Q ss_pred Hhcc--------cC-Cch------HHHHHHHHHHhCC--------CCCCCcccHHHHHhhhhc
Q psy17738 276 ISNI--------YT-IQN------QLITNIQTLNQGG--------FKCEILANTKTERLHMVL 315 (316)
Q Consensus 276 i~~~--------~~-~s~------~i~~~~~~l~~~~--------~H~gi~gNe~AD~LAk~~ 315 (316)
+..| |. .++ ++++.|.++.+.. ||+|++|||.||+||+..
T Consensus 77 i~~W~~~Wk~~gWk~s~G~pV~N~dL~~~l~~l~~~~~v~~~wVkgHsg~~gNe~aD~LA~~a 139 (161)
T PRK06548 77 LTKWVYSWKMRKWRKADGKPVLNQEIIQEIDSLMENRNIRMSWVNAHTGHPLNEAADSLARQA 139 (161)
T ss_pred HHHHHHHHHHCCCcccCCCccccHHHHHHHHHHHhcCceEEEEEecCCCCHHHHHHHHHHHHH
Confidence 9953 32 222 3667777776653 799999999999999864
No 4
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.78 E-value=2.7e-18 Score=143.36 Aligned_cols=110 Identities=22% Similarity=0.212 Sum_probs=82.7
Q ss_pred ceEEEEcCCCC--CCCceEEEEEeCCCeeEEEe-CCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHHHH
Q psy17738 200 HVRIYTDGSKD--EENAGCAFVIPDRNITKMFS-LDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQAI 276 (316)
Q Consensus 200 ~~~iytDGS~~--~~~~G~a~~~~~~~~~~~~~-l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~~i 276 (316)
.+.||||||+. ++..|+|+|+..++....+. .....||++|||+|+..||+.+.+ ...+.|+|||++++++|
T Consensus 3 ~v~iytDGs~~~n~~~~g~g~v~~~~~~~~~~~~~~~~~TN~~aEL~Ai~~AL~~~~~-----~~~v~I~tDS~yvi~~i 77 (150)
T PRK00203 3 QVEIYTDGACLGNPGPGGWGAILRYKGHEKELSGGEALTTNNRMELMAAIEALEALKE-----PCEVTLYTDSQYVRQGI 77 (150)
T ss_pred eEEEEEEecccCCCCceEEEEEEEECCeeEEEecCCCCCcHHHHHHHHHHHHHHHcCC-----CCeEEEEECHHHHHHHH
Confidence 48999999998 46688888875443322222 234789999999999999998854 36799999999999999
Q ss_pred hcc--------cCC-ch------HHHHHHHHHHhCC--------CCCCCcccHHHHHhhhh
Q psy17738 277 SNI--------YTI-QN------QLITNIQTLNQGG--------FKCEILANTKTERLHMV 314 (316)
Q Consensus 277 ~~~--------~~~-s~------~i~~~~~~l~~~~--------~H~gi~gNe~AD~LAk~ 314 (316)
..+ |.. ++ ++++.+.++.+.. +|+|++|||.||+||+.
T Consensus 78 ~~w~~~Wk~~~~~~~~g~~v~n~dl~~~i~~l~~~~~v~~~wV~~H~~~~~N~~AD~lA~~ 138 (150)
T PRK00203 78 TEWIHGWKKNGWKTADKKPVKNVDLWQRLDAALKRHQIKWHWVKGHAGHPENERCDELARA 138 (150)
T ss_pred HHHHHHHHHcCCcccCCCccccHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 963 322 22 2556666654432 79999999999999986
No 5
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.76 E-value=1.9e-18 Score=140.42 Aligned_cols=109 Identities=28% Similarity=0.303 Sum_probs=81.7
Q ss_pred CceEEEEcCCCC--CCCceEEEEEeCCCeeEEEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHHHH
Q psy17738 199 THVRIYTDGSKD--EENAGCAFVIPDRNITKMFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQAI 276 (316)
Q Consensus 199 ~~~~iytDGS~~--~~~~G~a~~~~~~~~~~~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~~i 276 (316)
+.+.||||||+. ++..|+|+++..+ ....+.++ ..|++.||++||..||+.+ . ..++.|+|||+++++.|
T Consensus 2 ~~~~iytDgS~~~~~~~~~~g~v~~~~-~~~~~~~~-~~s~~~aEl~Ai~~AL~~~-~-----~~~v~I~tDS~~v~~~l 73 (132)
T PF00075_consen 2 KAIIIYTDGSCRPNPGKGGAGYVVWGG-RNFSFRLG-GQSNNRAELQAIIEALKAL-E-----HRKVTIYTDSQYVLNAL 73 (132)
T ss_dssp TSEEEEEEEEECTTTTEEEEEEEEETT-EEEEEEEE-SECHHHHHHHHHHHHHHTH-S-----TSEEEEEES-HHHHHHH
T ss_pred CcEEEEEeCCccCCCCceEEEEEEECC-eEEEeccc-ccchhhhheehHHHHHHHh-h-----cccccccccHHHHHHHH
Confidence 468999999987 4556888876555 34555566 8999999999999999954 3 38899999999999988
Q ss_pred hc-----ccCCc--h-HHHHHHHHHHhCC---------CCCCC-cccHHHHHhhhhc
Q psy17738 277 SN-----IYTIQ--N-QLITNIQTLNQGG---------FKCEI-LANTKTERLHMVL 315 (316)
Q Consensus 277 ~~-----~~~~s--~-~i~~~~~~l~~~~---------~H~gi-~gNe~AD~LAk~~ 315 (316)
.. .+... + .+...+.++...+ +|+|+ .|||.||+|||..
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a 130 (132)
T PF00075_consen 74 NKWLHGNGWKKTSNGRPIKNEIWELLSRGIKVRFRWVPGHSGVPQGNERADRLAKEA 130 (132)
T ss_dssp HTHHHHTTSBSCTSSSBHTHHHHHHHHHSSEEEEEESSSSSSSHHHHHHHHHHHHHH
T ss_pred HHhccccccccccccccchhheeeccccceEEeeeeccCcCCCchhHHHHHHHHHHh
Confidence 88 34222 2 3555554443332 79999 6999999999964
No 6
>PRK13907 rnhA ribonuclease H; Provisional
Probab=99.64 E-value=2.1e-15 Score=122.45 Aligned_cols=111 Identities=20% Similarity=0.194 Sum_probs=87.5
Q ss_pred eEEEEcCCCC--CCCceEEEEEeCCCee--EEEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHHHH
Q psy17738 201 VRIYTDGSKD--EENAGCAFVIPDRNIT--KMFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQAI 276 (316)
Q Consensus 201 ~~iytDGS~~--~~~~G~a~~~~~~~~~--~~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~~i 276 (316)
+.||||||+. +|..|+|+|+.+.... ..+.. ...|++.||+.|++.||+.+.+.. ..++.|++||+.+++.+
T Consensus 2 ~~iy~DGa~~~~~g~~G~G~vi~~~~~~~~~~~~~-~~~tn~~AE~~All~aL~~a~~~g---~~~v~i~sDS~~vi~~~ 77 (128)
T PRK13907 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPL-GTMSNHEAEYHALLAALKYCTEHN---YNIVSFRTDSQLVERAV 77 (128)
T ss_pred EEEEEeeCCCCCCCccEEEEEEEECCeeEEEEecc-cccCCcHHHHHHHHHHHHHHHhCC---CCEEEEEechHHHHHHH
Confidence 6899999998 4789999998664332 22223 467999999999999999998865 57899999999999999
Q ss_pred hcccCCch---HHHHHHHHHHhCC-----CCCCCcccHHHHHhhhhc
Q psy17738 277 SNIYTIQN---QLITNIQTLNQGG-----FKCEILANTKTERLHMVL 315 (316)
Q Consensus 277 ~~~~~~s~---~i~~~~~~l~~~~-----~H~gi~gNe~AD~LAk~~ 315 (316)
.+.+.... .+++.+..+.+.. -|+-.+.|+.||.||+..
T Consensus 78 ~~~~~~~~~~~~l~~~~~~l~~~f~~~~~~~v~r~~N~~Ad~LA~~a 124 (128)
T PRK13907 78 EKEYAKNKMFAPLLEEALQYIKSFDLFFIKWIPSSQNKVADELARKA 124 (128)
T ss_pred hHHHhcChhHHHHHHHHHHHHhcCCceEEEEcCchhchhHHHHHHHH
Confidence 99775322 3566666666553 388889999999999864
No 7
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=99.57 E-value=4.2e-14 Score=112.11 Aligned_cols=111 Identities=26% Similarity=0.251 Sum_probs=85.2
Q ss_pred EEEEcCCCCC--CCceEEEEEeCCCeeEEEe---CCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHHHH
Q psy17738 202 RIYTDGSKDE--ENAGCAFVIPDRNITKMFS---LDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQAI 276 (316)
Q Consensus 202 ~iytDGS~~~--~~~G~a~~~~~~~~~~~~~---l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~~i 276 (316)
.+|||||... +++|+|+++.+......+. .....+++.+|+.|+..||+.+.... ..++.|++||+.+++.+
T Consensus 1 ~~~~Dgs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~~~s~~~aEl~al~~al~~~~~~~---~~~i~i~~Ds~~~~~~~ 77 (130)
T cd06222 1 VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELALELG---GKKVNIYTDSQYVINAL 77 (130)
T ss_pred CEEecccCCCCCCceEEEEEEEeCCCeEEEeccccCCCCcHHHHHHHHHHHHHHHHHhCC---CceEEEEECHHHHHHHh
Confidence 4899999984 5899999886643222221 22578999999999999999987654 78999999999999999
Q ss_pred hcccCCc----hHHHHHHHHHHhCC---------CCCCCcccHHHHHhhhhc
Q psy17738 277 SNIYTIQ----NQLITNIQTLNQGG---------FKCEILANTKTERLHMVL 315 (316)
Q Consensus 277 ~~~~~~s----~~i~~~~~~l~~~~---------~H~gi~gNe~AD~LAk~~ 315 (316)
.+..... ..++..+.++.+.+ +|+|+.+|+.||.|||..
T Consensus 78 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~v~~h~~~~~n~~ad~la~~~ 129 (130)
T cd06222 78 TGWYEGKPVKNVDLWQRLLALLKRFHKVRFEWVPGHSGIEGNERADALAKEA 129 (130)
T ss_pred hccccCCChhhHHHHHHHHHHHhCCCeEEEEEcCCCCCCcchHHHHHHHHhh
Confidence 9876422 23556666655332 699999999999999864
No 8
>KOG3752|consensus
Probab=99.57 E-value=1.6e-14 Score=132.98 Aligned_cols=114 Identities=22% Similarity=0.226 Sum_probs=88.1
Q ss_pred CCceEEEEcCCCCC-----CCceEEEEEeCCCe-eEEEeCC-CCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChH
Q psy17738 198 ETHVRIYTDGSKDE-----ENAGCAFVIPDRNI-TKMFSLD-PKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQ 270 (316)
Q Consensus 198 ~~~~~iytDGS~~~-----~~~G~a~~~~~~~~-~~~~~l~-~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~ 270 (316)
.+...+|||||+.. ..+|+|||+.++.. ..+.++. ...|||+|||.|+..||+-+.+.. ..+++|.|||.
T Consensus 210 ~~~~vvytDGS~~~ng~~~~~AGyGvywg~~~e~N~s~pv~~g~qtNnrAEl~Av~~ALkka~~~~---~~kv~I~TDS~ 286 (371)
T KOG3752|consen 210 IEIQVVYTDGSSSGNGRKSSRAGYGVYWGPGHELNVSGPLAGGRQTNNRAELIAAIEALKKARSKN---INKVVIRTDSE 286 (371)
T ss_pred ccceEEEecCccccCCCCCCcceeEEeeCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhcC---CCcEEEEechH
Confidence 44589999999983 45999999977643 5666764 789999999999999999997754 56999999999
Q ss_pred HHHHHHhccc---C-----Cc-h-H----------HHHHHHHHHhC-----------CCCCCCcccHHHHHhhhh
Q psy17738 271 AALQAISNIY---T-----IQ-N-Q----------LITNIQTLNQG-----------GFKCEILANTKTERLHMV 314 (316)
Q Consensus 271 ~ai~~i~~~~---~-----~s-~-~----------i~~~~~~l~~~-----------~~H~gi~gNe~AD~LAk~ 314 (316)
++++.|+.|- . .+ + + .+..+.+|.+. +||.|+.|||.||.||+.
T Consensus 287 ~~i~~l~~wv~~~k~~~~k~~~~~~~i~~~v~n~~~~~e~~~l~q~~~~~~vq~~~V~Gh~gi~gne~Ad~lARk 361 (371)
T KOG3752|consen 287 YFINSLTLWVQGWKKNGWKTSNGSDRICAYVKNQDFFNELDELEQEISNKKVQQEYVGGHSGILGNEMADALARK 361 (371)
T ss_pred HHHHHHHHHHhhhccCccccccCCCccceeeecchHHHHHHHHHhhhccCceEEEEecCcCCcchHHHHHHHHhh
Confidence 9999999762 1 11 1 1 12334444333 389999999999999984
No 9
>PRK07708 hypothetical protein; Validated
Probab=99.56 E-value=3.3e-14 Score=125.34 Aligned_cols=119 Identities=18% Similarity=0.147 Sum_probs=90.4
Q ss_pred hcCCceEEEEcCCCC--CCCceEEEEEeC--CCeeE----EEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEc
Q psy17738 196 NYETHVRIYTDGSKD--EENAGCAFVIPD--RNITK----MFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIIS 267 (316)
Q Consensus 196 ~~~~~~~iytDGS~~--~~~~G~a~~~~~--~~~~~----~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~s 267 (316)
..++.+.+|+|||.. ++++|+|+|+.. +.... ...++...||+.||+.|++.||+.+.+.+ .....|.|++
T Consensus 69 ~ep~~~~vY~DGs~~~n~g~aG~GvVI~~~~g~~~~~~~~~~~l~~~~TNN~AEy~Ali~aL~~A~e~g-~~~~~V~I~~ 147 (219)
T PRK07708 69 EEPHEILVYFDGGFDKETKLAGLGIVIYYKQGNKRYRIRRNAYIEGIYDNNEAEYAALYYAMQELEELG-VKHEPVTFRG 147 (219)
T ss_pred cCCCcEEEEEeeccCCCCCCcEEEEEEEECCCCEEEEEEeeccccccccCcHHHHHHHHHHHHHHHHcC-CCcceEEEEe
Confidence 556789999999996 578999988854 33222 12355568999999999999999998764 2233589999
Q ss_pred ChHHHHHHHhcccCCchH----HHHHHHHHHhCC------CCCCCcccHHHHHhhhhc
Q psy17738 268 DSQAALQAISNIYTIQNQ----LITNIQTLNQGG------FKCEILANTKTERLHMVL 315 (316)
Q Consensus 268 DS~~ai~~i~~~~~~s~~----i~~~~~~l~~~~------~H~gi~gNe~AD~LAk~~ 315 (316)
||+.+++.+.+.|...+. +.+.+.++.+.. -|.....|+.||+||+.+
T Consensus 148 DSqlVi~qi~g~wk~~~~~l~~y~~~i~~l~~~~~l~~~~~~VpR~~N~~AD~LAk~A 205 (219)
T PRK07708 148 DSQVVLNQLAGEWPCYDEHLNHWLDRIEQKLKQLKLTPVYEPISRKQNKEADQLATQA 205 (219)
T ss_pred ccHHHHHHhCCCceeCChhHHHHHHHHHHHHhhCCceEEEEECCchhhhHHHHHHHHH
Confidence 999999999998865553 345555554432 288999999999999975
No 10
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.38 E-value=2.9e-12 Score=122.37 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=87.4
Q ss_pred ceEEEEcCCCC--CCCceEEEEEeCC--C-eeE--EEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHH
Q psy17738 200 HVRIYTDGSKD--EENAGCAFVIPDR--N-ITK--MFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAA 272 (316)
Q Consensus 200 ~~~iytDGS~~--~~~~G~a~~~~~~--~-~~~--~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~a 272 (316)
.+.||||||+. +|..|+|+++.+. . ... ...++ .+||+.||+.|++.||+.+.+.. ..++.|++||+.+
T Consensus 2 ~~~i~~DGa~~~n~g~aG~G~vi~~~~~~~~~~~~~~~~~-~~tnn~AE~~All~gL~~a~~~g---~~~v~i~~DS~lv 77 (372)
T PRK07238 2 KVVVEADGGSRGNPGPAGYGAVVWDADRGEVLAERAEAIG-RATNNVAEYRGLIAGLEAAAELG---ATEVEVRMDSKLV 77 (372)
T ss_pred eEEEEecCCCCCCCCceEEEEEEEeCCCCcEEEEeecccC-CCCchHHHHHHHHHHHHHHHhCC---CCeEEEEeCcHHH
Confidence 37899999998 4678999988653 2 212 23344 78999999999999999998866 6789999999999
Q ss_pred HHHHhcccCCchH----HHHHHHHHHhCC-----CCCCCcccHHHHHhhhh
Q psy17738 273 LQAISNIYTIQNQ----LITNIQTLNQGG-----FKCEILANTKTERLHMV 314 (316)
Q Consensus 273 i~~i~~~~~~s~~----i~~~~~~l~~~~-----~H~gi~gNe~AD~LAk~ 314 (316)
++.+.+.|...++ ++..+..+.+.. -|.-.++|+.||.||+.
T Consensus 78 i~~i~~~~~~~~~~l~~~~~~i~~l~~~f~~~~i~~v~r~~N~~AD~LA~~ 128 (372)
T PRK07238 78 VEQMSGRWKVKHPDMKPLAAQARELASQFGRVTYTWIPRARNAHADRLANE 128 (372)
T ss_pred HHHhCCCCccCChHHHHHHHHHHHHHhcCCceEEEECCchhhhHHHHHHHH
Confidence 9999988865542 445666666653 37778999999999986
No 11
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=98.85 E-value=7.9e-09 Score=77.22 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=60.3
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHHHHhcccCCc---hHHHHHHHHHHhCC-----CCCCCcccHHH
Q psy17738 237 IFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQAISNIYTIQ---NQLITNIQTLNQGG-----FKCEILANTKT 308 (316)
Q Consensus 237 v~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~~i~~~~~~s---~~i~~~~~~l~~~~-----~H~gi~gNe~A 308 (316)
+..||+.|+..||+++.+.+ ..+|.|.|||+.+++.|++..... ..++..++.+.+.. -|.-.++|..|
T Consensus 1 ~~~aE~~al~~al~~a~~~g---~~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~r~~N~~A 77 (87)
T PF13456_consen 1 PLEAEALALLEALQLAWELG---IRKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRFWNVSVSHIPREQNKVA 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCCT----SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCCSCEEEEE--GGGSHHH
T ss_pred CcHHHHHHHHHHHHHHHHCC---CCEEEEEecCccccccccccccccccccccchhhhhhhccccceEEEEEChHHhHHH
Confidence 46899999999999999877 899999999999999999875322 24778888888775 39999999999
Q ss_pred HHhhhhc
Q psy17738 309 ERLHMVL 315 (316)
Q Consensus 309 D~LAk~~ 315 (316)
|.|||..
T Consensus 78 ~~LA~~a 84 (87)
T PF13456_consen 78 DALAKFA 84 (87)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999964
No 12
>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family.
Probab=87.40 E-value=1.8 Score=36.19 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=41.0
Q ss_pred CceEEEEcCCCCCCCceEEEEEeC---CCeeEE--E---eC-C-CCCCchHHHHHHHHHHHHHhcCCC---CCCCCcEEE
Q psy17738 199 THVRIYTDGSKDEENAGCAFVIPD---RNITKM--F---SL-D-PKSSIFACELYAIYAALEYLHHPN---NNTVENYVI 265 (316)
Q Consensus 199 ~~~~iytDGS~~~~~~G~a~~~~~---~~~~~~--~---~l-~-~~~tv~~AEl~Ai~~Al~~~~~~~---~~~~~~i~I 265 (316)
..+++|+|+|. ...|+.+|... +..... + +. + ...|+=+-||+|+..|.+++.... +....++.+
T Consensus 80 ~~L~~F~DAS~--~aygavvYlr~~~~~~~~~~ll~aKsrv~P~k~~tIPRlEL~a~~l~~~l~~~~~~~l~~~~~~~~~ 157 (159)
T PF05380_consen 80 VELHVFCDASE--SAYGAVVYLRSYSDGSVQVRLLFAKSRVAPLKTVTIPRLELLAALLGVRLANTVKKELDIEISQVVF 157 (159)
T ss_pred eeeeEeecccc--cceeeEeEeeeccCCceeeeeeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCcceeEE
Confidence 35899999994 45666666543 221111 1 11 1 245999999999999999874421 233556666
Q ss_pred Ec
Q psy17738 266 IS 267 (316)
Q Consensus 266 ~s 267 (316)
+|
T Consensus 158 wt 159 (159)
T PF05380_consen 158 WT 159 (159)
T ss_pred eC
Confidence 54
No 13
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and .; GO: 0004523 ribonuclease H activity
Probab=72.12 E-value=5.2 Score=34.78 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=41.1
Q ss_pred CceEEEEcCCCCCCCceEEEEEeCCCeeEEEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHH
Q psy17738 199 THVRIYTDGSKDEENAGCAFVIPDRNITKMFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQ 274 (316)
Q Consensus 199 ~~~~iytDGS~~~~~~G~a~~~~~~~~~~~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~ 274 (316)
.--.||+|+.- +|.|+.+..+.....|.. .-.++.+|+.|.-.|--+. ..++ |.|||..|+.
T Consensus 93 ~lc~VfaDATp----Tgwgi~i~~~~~~~Tfs~--~l~IhtaELlaaClAr~~~-------~~r~-l~tDnt~Vls 154 (245)
T PF00336_consen 93 GLCQVFADATP----TGWGISITGQRMRGTFSK--PLPIHTAELLAACLARLMS-------GARC-LGTDNTVVLS 154 (245)
T ss_pred CCCceeccCCC----CcceeeecCceeeeeecc--cccchHHHHHHHHHHHhcc-------CCcE-EeecCcEEEe
Confidence 34678999865 445555544444445543 4679999999998777554 3344 8999987653
No 14
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=59.66 E-value=21 Score=33.11 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=32.5
Q ss_pred CCceEEEEEeCCCeeEEEeCCCCCCchHHH---HHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHHHHhcccC
Q psy17738 212 ENAGCAFVIPDRNITKMFSLDPKSSIFACE---LYAIYAALEYLHHPNNNTVENYVIISDSQAALQAISNIYT 281 (316)
Q Consensus 212 ~~~G~a~~~~~~~~~~~~~l~~~~tv~~AE---l~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~~i~~~~~ 281 (316)
|.+-+||.++.++-.... .+...+.-+ +--+..+++.++......+.+|.++|||+.++..++...+
T Consensus 166 g~~~IGVHVRhGngeD~~---~h~~~~~D~e~~L~~V~~ai~~ak~~~~~k~~~IFLATDSaeVid~fr~~FP 235 (321)
T PF05830_consen 166 GYSVIGVHVRHGNGEDIM---DHAPYWADEERALRQVCTAIDKAKALAPPKPVRIFLATDSAEVIDQFRKKFP 235 (321)
T ss_dssp TSEEEEEEE------------------HHHHHHHHHHHHHHHHHHTS--SS-EEEEEEES-HHHHHHHHHHST
T ss_pred CCceEEEEEeccCCcchh---ccCccccCchHHHHHHHHHHHHHHhccCCCCeeEEEecCcHHHHHHHHHHCC
Confidence 456778888755432111 122222222 3333455555544432346789999999999999998754
No 15
>PF09004 DUF1891: Domain of unknown function (DUF1891); InterPro: IPR015095 This domain is found at the extreme N terminus of eukaryotic alkylated DNA repair protein homologs. ; GO: 0008168 methyltransferase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 2CQ2_A 3THT_C 3THP_A.
Probab=45.87 E-value=3.9 Score=26.23 Aligned_cols=33 Identities=3% Similarity=0.199 Sum_probs=6.8
Q ss_pred hhHHHHHHhhcccccCCCCCCchHHH-HHHHHHHHh
Q psy17738 7 YTSMYRQINQIPRRNAYTWCSAEQVM-ELFGDLYLH 41 (316)
Q Consensus 7 ~~~~~~~~~~L~~l~~~~~G~~~~~~-~ly~a~v~p 41 (316)
++|+..++.-||.|.+. ..++..+ .+|+++|.+
T Consensus 9 ~KKa~qRlyFLRkl~k~--~~~~~~l~lfY~s~IeS 42 (42)
T PF09004_consen 9 YKKAQQRLYFLRKLRKF--NVDSKLLTLFYHSVIES 42 (42)
T ss_dssp -------------------SS-----SHTTTTT---
T ss_pred HHHHHhHHHHHHHHHHc--cchhHHHHHHHHHHhcC
Confidence 47888899999999654 6788888 999988754
No 16
>PRK11376 hlyE hemolysin E; Provisional
Probab=30.25 E-value=27 Score=30.75 Aligned_cols=42 Identities=10% Similarity=0.009 Sum_probs=32.9
Q ss_pred cchhch-hHHHHHHhhcccccCCCCCCchHHHHHHHHHHHhhhhhhhhcC
Q psy17738 2 RSAIDY-TSMYRQINQIPRRNAYTWCSAEQVMELFGDLYLHTIDIIKVLN 50 (316)
Q Consensus 2 ~~~~~~-~~~~~~~~~L~~l~~~~~G~~~~~~~ly~a~v~p~l~Yg~~vW 50 (316)
|+-++| ++++..+..||.|... ...-|..||.|+.++|..+=
T Consensus 49 RaMlgYqG~AK~~Ld~IRsLnSd-------Ar~kYqecV~pVFEWCVSin 91 (303)
T PRK11376 49 RFKQEYSQAASVLVGDIKTLLMD-------SQDKYFEATQTVYEWCGVAT 91 (303)
T ss_pred HHhhhhhhHHHHhhhHHHHHHHH-------HHHHHHHhhHHHHHHHHHHH
Confidence 455678 8899999988888542 23789999999999998753
No 17
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=23.74 E-value=2.6e+02 Score=22.75 Aligned_cols=55 Identities=18% Similarity=0.248 Sum_probs=36.0
Q ss_pred CCCceEEEEEeCCCeeEEEeCC--CCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcCh
Q psy17738 211 EENAGCAFVIPDRNITKMFSLD--PKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDS 269 (316)
Q Consensus 211 ~~~~G~a~~~~~~~~~~~~~l~--~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS 269 (316)
.=.||+++.-.++......-++ .+.--.=||-.||..|+.. -. .....+.+++|+
T Consensus 25 ~F~VGAa~~t~~G~i~tG~NiEnasy~~t~CAErsAI~~ais~-G~---~~~~~v~v~~~~ 81 (134)
T COG0295 25 KFKVGAALRTKDGRIYTGANVENASYGLTVCAERSAIFKAISE-GK---RKFDAVVVVADT 81 (134)
T ss_pred CCcEEEEEEeCCCCEEEEEeeecccccchhhHHHHHHHHHHHc-CC---CcEEEEEEEcCC
Confidence 3468888877666654444443 1222234999999999876 22 336789999998
No 18
>COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein [General function prediction only]
Probab=23.62 E-value=2.6e+02 Score=24.74 Aligned_cols=77 Identities=13% Similarity=0.049 Sum_probs=48.0
Q ss_pred eEEEEcCCCC--CCCceEEEEEeCCC----e-eEEEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEE----cCh
Q psy17738 201 VRIYTDGSKD--EENAGCAFVIPDRN----I-TKMFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVII----SDS 269 (316)
Q Consensus 201 ~~iytDGS~~--~~~~G~a~~~~~~~----~-~~~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~----sDS 269 (316)
+.-+.+|+.. ++..++-++..... . ...... ...++-.+|.+|++.+++.+.... ..+.+.++ .||
T Consensus 66 ~i~~~~G~y~~~p~t~~~k~yr~k~~~~~~~lt~~~~~-~~~~n~s~d~la~ly~~~~~~~~~--nrk~~i~y~~~~~ds 142 (225)
T COG3341 66 IISWAKGDYDAKPGTQEFKEYRGKCTIEYSWLTESSEF-SIKSNDSGDVLAKLYGLRYEVPLD--NRKSVINYLTPGNDS 142 (225)
T ss_pred cceeccCCccccCCCcceeEEeccccccceeeeeeccc-ccccCchHHHHHHhcccccccccc--CccceeeccCCcchh
Confidence 5556677665 44444444442211 1 111112 245788899999999999887654 23445557 899
Q ss_pred HHHHHHHhccc
Q psy17738 270 QAALQAISNIY 280 (316)
Q Consensus 270 ~~ai~~i~~~~ 280 (316)
++..+-+.+-.
T Consensus 143 ~a~~k~~k~~~ 153 (225)
T COG3341 143 WAYFKYVKDKC 153 (225)
T ss_pred HHHHHHHhhhh
Confidence 99999887654
No 19
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=23.45 E-value=3.1e+02 Score=22.61 Aligned_cols=44 Identities=27% Similarity=0.213 Sum_probs=25.3
Q ss_pred CCCceEEEEEeCCCeeEEEe-C--CCCCCchHHHHHHHHHHHHHhcC
Q psy17738 211 EENAGCAFVIPDRNITKMFS-L--DPKSSIFACELYAIYAALEYLHH 254 (316)
Q Consensus 211 ~~~~G~a~~~~~~~~~~~~~-l--~~~~tv~~AEl~Ai~~Al~~~~~ 254 (316)
+..+|+.+|..++....... . ...--.--||+.||..|.+.+..
T Consensus 27 e~PvGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~ 73 (152)
T COG0590 27 EVPVGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGN 73 (152)
T ss_pred CCCEEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCC
Confidence 34566665553444432222 1 12222346999999999998855
Done!