Query psy17738
Match_columns 316
No_of_seqs 204 out of 1493
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 21:41:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h08_A RNH (ribonuclease H); R 99.8 1.2E-20 3.9E-25 155.6 8.8 111 199-315 3-141 (146)
2 2qkb_A Ribonuclease H1, HS-RNA 99.8 2.3E-20 7.9E-25 155.3 10.5 115 198-315 5-148 (154)
3 3qio_A GAG-POL polyprotein; RN 99.8 1.4E-19 4.9E-24 149.8 11.8 109 198-315 10-144 (150)
4 1jl1_A Ribonuclease HI; RNAse 99.8 1E-19 3.6E-24 151.5 9.4 110 200-315 4-140 (155)
5 2e4l_A Ribonuclease HI, RNAse 99.8 1.2E-19 4.2E-24 151.5 9.6 111 199-315 5-142 (158)
6 2kq2_A Ribonuclease H-related 99.8 4E-20 1.4E-24 152.7 6.5 114 198-315 4-134 (147)
7 1ril_A Ribonuclease H; hydrola 99.8 2.2E-19 7.6E-24 151.2 7.4 112 199-315 7-145 (166)
8 3p1g_A Xenotropic murine leuke 99.8 8.7E-19 3E-23 147.2 10.5 110 200-315 23-153 (165)
9 3u3g_D Ribonuclease H, RNAse H 99.8 1.3E-18 4.6E-23 141.4 8.1 112 200-315 3-134 (140)
10 3hst_B Protein RV2228C/MT2287; 99.7 2.5E-18 8.7E-23 140.2 8.3 112 200-315 3-130 (141)
11 2lsn_A Reverse transcriptase; 99.7 2.2E-17 7.5E-22 138.5 9.6 112 199-314 6-159 (165)
12 2ehg_A Ribonuclease HI; RNAse 99.7 4.3E-17 1.5E-21 134.5 8.3 112 201-315 2-131 (149)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.7 2.1E-16 7.3E-21 156.7 11.1 109 198-315 434-554 (555)
14 2zd1_A Reverse transcriptase/r 99.7 1.7E-16 5.7E-21 157.6 9.4 109 198-315 437-557 (557)
15 1zbf_A Ribonuclease H-related 99.4 4.4E-14 1.5E-18 115.4 2.5 108 198-309 9-138 (142)
16 4htu_A Ribonuclease H, RNAse H 99.3 1.9E-12 6.4E-17 104.0 5.0 77 198-279 3-83 (134)
17 1rw3_A POL polyprotein; RNA an 76.0 1.1 3.7E-05 42.6 2.1 76 198-279 344-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 56.3 11 0.00038 35.3 4.7 79 198-280 322-406 (428)
19 1sn9_A BBAT, tetrameric beta-B 48.1 5.5 0.00019 21.0 0.6 14 302-315 4-17 (26)
20 2z3g_A Blasticidin-S deaminase 36.5 73 0.0025 24.4 5.9 54 212-269 27-80 (130)
21 1qoy_A Hemolysin E; toxin, mem 34.7 26 0.00087 31.3 3.2 43 2-51 64-107 (318)
22 1kn6_A Prohormone convertase 1 28.7 18 0.00061 26.2 0.9 14 303-316 21-34 (90)
23 2fr5_A Cytidine deaminase; tet 28.4 1.3E+02 0.0044 23.6 6.1 55 211-269 35-91 (146)
24 1uwz_A Cytidine deaminase; CDD 22.6 1.5E+02 0.005 22.8 5.4 53 213-269 25-79 (136)
25 1btq_A BAND 3 anion transport 22.5 29 0.001 19.0 0.8 15 33-47 8-22 (26)
26 2zqe_A MUTS2 protein; alpha/be 20.8 2E+02 0.0067 20.0 5.3 35 185-220 46-80 (83)
No 1
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.83 E-value=1.2e-20 Score=155.64 Aligned_cols=111 Identities=22% Similarity=0.221 Sum_probs=85.1
Q ss_pred CceEEEEcCCCCC--CCceEEEEEeCCCeeEE--EeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHH
Q psy17738 199 THVRIYTDGSKDE--ENAGCAFVIPDRNITKM--FSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQ 274 (316)
Q Consensus 199 ~~~~iytDGS~~~--~~~G~a~~~~~~~~~~~--~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~ 274 (316)
..+.||||||+.. |..|+|+|+..++.... ..+ ..+||+.||+.|++.||+.+.+ ..+|.|+|||+++++
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~-----~~~v~I~tDS~~vi~ 76 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE-----PARVQLYSDSAYLVN 76 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS-----CCEEEEEESCHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc-----cCcEEEEeChHHHHH
Confidence 4689999999983 56899998876543322 223 3689999999999999999865 578999999999999
Q ss_pred HHhccc---------C------Cch-HHHHHHHHHHhCC--------CCCCCcccHHHHHhhhhc
Q psy17738 275 AISNIY---------T------IQN-QLITNIQTLNQGG--------FKCEILANTKTERLHMVL 315 (316)
Q Consensus 275 ~i~~~~---------~------~s~-~i~~~~~~l~~~~--------~H~gi~gNe~AD~LAk~~ 315 (316)
.|.+.| . ..+ ++++.+.++.+.. ||+|++|||.||+|||..
T Consensus 77 ~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~~v~~~~V~gH~g~~~N~~AD~LA~~a 141 (146)
T 3h08_A 77 AMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLHRVTFHKVKGHSDNPYNSRADELARLA 141 (146)
T ss_dssp HHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHSEEEEEECCC-CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhCceEEEEcCCcCCcHhHHHHHHHHHHH
Confidence 999821 1 112 3666666665542 899999999999999964
No 2
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.82 E-value=2.3e-20 Score=155.27 Aligned_cols=115 Identities=21% Similarity=0.250 Sum_probs=90.1
Q ss_pred CCceEEEEcCCCCC-C----CceEEEEEeCCCe-eEEEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHH
Q psy17738 198 ETHVRIYTDGSKDE-E----NAGCAFVIPDRNI-TKMFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQA 271 (316)
Q Consensus 198 ~~~~~iytDGS~~~-~----~~G~a~~~~~~~~-~~~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ 271 (316)
.+.+.||||||+.. + ..|+|+|+.++.. ..+..++..+||+.||+.|++.||+.+.+.. ..+|.|+|||++
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~---~~~v~i~tDS~~ 81 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQN---INKLVLYTNSMF 81 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTT---CCEEEEEESCHH
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCC---CceEEEEECcHH
Confidence 46799999999983 2 2799998865432 3455665578999999999999999997754 689999999999
Q ss_pred HHHHHhcc--------cCC------ch-HHHHHHHHHHhCC--------CCCCCcccHHHHHhhhhc
Q psy17738 272 ALQAISNI--------YTI------QN-QLITNIQTLNQGG--------FKCEILANTKTERLHMVL 315 (316)
Q Consensus 272 ai~~i~~~--------~~~------s~-~i~~~~~~l~~~~--------~H~gi~gNe~AD~LAk~~ 315 (316)
+++.|.++ |.. .+ ++++.+.++.+.. +|+|++|||.||+|||..
T Consensus 82 vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~v~~~~V~~H~g~~~N~~AD~LA~~a 148 (154)
T 2qkb_A 82 TINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREG 148 (154)
T ss_dssp HHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCEEEEEECCTTSSCHHHHHHHHHHHHH
T ss_pred HHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCceEEEEccCCCCCHhHHHHHHHHHHH
Confidence 99999974 221 12 3677777766542 799999999999999864
No 3
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.81 E-value=1.4e-19 Score=149.79 Aligned_cols=109 Identities=25% Similarity=0.273 Sum_probs=82.2
Q ss_pred CCceEEEEcCCCC--CCCceEEEEEeCCCeeEEEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHHH
Q psy17738 198 ETHVRIYTDGSKD--EENAGCAFVIPDRNITKMFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQA 275 (316)
Q Consensus 198 ~~~~~iytDGS~~--~~~~G~a~~~~~~~~~~~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~~ 275 (316)
.+.+.||||||+. +|..|+|+++.++.. ....+ ..+||+.||++|+..||+.+ ..++.|+|||++++++
T Consensus 10 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~-~~~~~-~~~Tnn~aEl~A~i~AL~~~-------~~~v~i~tDS~~v~~~ 80 (150)
T 3qio_A 10 VGAETFYVDGAANRETKLGKAGYVTNRGRQ-KVVTL-TDTTNQKTELQAIYLALQDS-------GLEVNIVTDSQYALGI 80 (150)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCE-EEEEE-SSCCHHHHHHHHHHHHHHHS-------CSEEEEEESCHHHHHH
T ss_pred CCCEEEEEccCCCCCCCCeEEEEEEEcCCE-EEEeC-CCCCHHHHHHHHHHHHHHhC-------CCcEEEEeCcHHHHHH
Confidence 4579999999997 466888888866543 23344 47899999999999999985 4789999999999999
Q ss_pred Hhcc--------cCC------ch-HHHHHHHH-HHhCC--------CCCCCcccHHHHHhhhhc
Q psy17738 276 ISNI--------YTI------QN-QLITNIQT-LNQGG--------FKCEILANTKTERLHMVL 315 (316)
Q Consensus 276 i~~~--------~~~------s~-~i~~~~~~-l~~~~--------~H~gi~gNe~AD~LAk~~ 315 (316)
|.++ |.. .+ ++++.+.+ +.+.. +|+|++|||+||+||++.
T Consensus 81 i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a 144 (150)
T 3qio_A 81 ITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 144 (150)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHH
Confidence 9986 111 12 24555443 33321 799999999999999974
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.80 E-value=1e-19 Score=151.50 Aligned_cols=110 Identities=22% Similarity=0.226 Sum_probs=85.6
Q ss_pred ceEEEEcCCCC--CCCceEEEEEeCCCeeE--EEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHHH
Q psy17738 200 HVRIYTDGSKD--EENAGCAFVIPDRNITK--MFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQA 275 (316)
Q Consensus 200 ~~~iytDGS~~--~~~~G~a~~~~~~~~~~--~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~~ 275 (316)
.+.||||||+. ++..|+|+|+...+... +..+ ..+||+.||+.|+..||+.+.+ ..++.|+|||+++++.
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~-----~~~v~I~tDS~~vi~~ 77 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE-----HAEVILSTDSQYVRQG 77 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS-----CCEEEEEECCHHHHHH
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc-----CCcEEEEeCHHHHHHH
Confidence 58999999998 35689999886544322 2223 3679999999999999999865 3789999999999999
Q ss_pred Hhcc--------cCC------ch-HHHHHHHHHHhCC--------CCCCCcccHHHHHhhhhc
Q psy17738 276 ISNI--------YTI------QN-QLITNIQTLNQGG--------FKCEILANTKTERLHMVL 315 (316)
Q Consensus 276 i~~~--------~~~------s~-~i~~~~~~l~~~~--------~H~gi~gNe~AD~LAk~~ 315 (316)
|.+| |.. .+ ++++.+.++.+.. ||+|++|||.||+||+..
T Consensus 78 i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a 140 (155)
T 1jl1_A 78 ITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERADELARAA 140 (155)
T ss_dssp HHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEEEECCSSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccccCCccCCHHHHHHHHHHHccCceEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 9972 321 12 4667777776542 899999999999999864
No 5
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.80 E-value=1.2e-19 Score=151.55 Aligned_cols=111 Identities=24% Similarity=0.203 Sum_probs=86.0
Q ss_pred CceEEEEcCCCC--CCCceEEEEEeCCCeeE--EEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHH
Q psy17738 199 THVRIYTDGSKD--EENAGCAFVIPDRNITK--MFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQ 274 (316)
Q Consensus 199 ~~~~iytDGS~~--~~~~G~a~~~~~~~~~~--~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~ 274 (316)
..+.||||||+. ++..|+|+|+.+++... +..+ ..+||+.||+.|+..||+.+.+ ..+|.|+|||+++++
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~-----~~~v~I~tDS~~vi~ 78 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE-----PCKIILTSDSQYMRQ 78 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS-----CCEEEEEECCHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc-----CCeEEEEeCHHHHHH
Confidence 458999999998 46689999886544322 2223 3579999999999999998854 378999999999999
Q ss_pred HHhc--------ccCC------ch-HHHHHHHHHHhCC--------CCCCCcccHHHHHhhhhc
Q psy17738 275 AISN--------IYTI------QN-QLITNIQTLNQGG--------FKCEILANTKTERLHMVL 315 (316)
Q Consensus 275 ~i~~--------~~~~------s~-~i~~~~~~l~~~~--------~H~gi~gNe~AD~LAk~~ 315 (316)
.|.+ .|.. .+ ++++.+.++.+.. ||+|++|||.||+||+..
T Consensus 79 ~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LAk~a 142 (158)
T 2e4l_A 79 GIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDWRWVKGHAGHAENERCDQLARAA 142 (158)
T ss_dssp HHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHccCcEEEEEccCCCCchhHHHHHHHHHHH
Confidence 9998 3321 12 4667777776542 899999999999999864
No 6
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.80 E-value=4e-20 Score=152.68 Aligned_cols=114 Identities=14% Similarity=0.022 Sum_probs=86.0
Q ss_pred CCceEEEEcCCCCCCCceEEEEEeCCCee--EEE-eC--CC--CCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChH
Q psy17738 198 ETHVRIYTDGSKDEENAGCAFVIPDRNIT--KMF-SL--DP--KSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQ 270 (316)
Q Consensus 198 ~~~~~iytDGS~~~~~~G~a~~~~~~~~~--~~~-~l--~~--~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~ 270 (316)
++.+.||||||+..|..|+|+|+.+++.. .+. +. +. .+||+.||++|++.||+.+.+.. . +|.|+|||+
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~---~-~v~I~tDS~ 79 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLG---V-KIRILHDYA 79 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHT---C-CCCBSSCCS
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCC---C-eEEEEECcH
Confidence 46789999999999889999998654432 223 22 22 36999999999999999876643 3 899999999
Q ss_pred HHHHHHhcccCCchH-HH---HHHHHHHhC------CCCCCCcccHHHHHhhhhc
Q psy17738 271 AALQAISNIYTIQNQ-LI---TNIQTLNQG------GFKCEILANTKTERLHMVL 315 (316)
Q Consensus 271 ~ai~~i~~~~~~s~~-i~---~~~~~l~~~------~~H~gi~gNe~AD~LAk~~ 315 (316)
.+.+.+.+.|..+.. .. +.+++|.+. .+|+|++|||+||+|||+.
T Consensus 80 ~i~~w~~~~w~~~~~~~~~~~~l~~~l~~~v~~~wV~gH~g~~~Ne~AD~LA~~a 134 (147)
T 2kq2_A 80 GIAFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDYVDMKAKSA 134 (147)
T ss_dssp THHHHTTSSSSCCHHHHHHHHCGGGGGSTTCCBCCCCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccCCcchHHHHHHHHHhcCCeeEEEecCcCCCcchHHHHHHHHHH
Confidence 988888887866553 22 333343322 2799999999999999864
No 7
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.78 E-value=2.2e-19 Score=151.18 Aligned_cols=112 Identities=18% Similarity=0.121 Sum_probs=85.0
Q ss_pred CceEEEEcCCCC--CCCceEEEEEeCCCeeEEEeC-CCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHHH
Q psy17738 199 THVRIYTDGSKD--EENAGCAFVIPDRNITKMFSL-DPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQA 275 (316)
Q Consensus 199 ~~~~iytDGS~~--~~~~G~a~~~~~~~~~~~~~l-~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~~ 275 (316)
..+.||||||+. ++..|+|+|+.+++....+.. ...+||+.||+.|++.||+.+.+ ..+|.|+|||+++++.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~-----~~~v~I~tDS~~vi~~ 81 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE-----PCEVDLYTDSHYLKKA 81 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCS-----CCEEEEECCCHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhcc-----CCeEEEEeChHHHHHH
Confidence 468999999998 356899999865432222221 13679999999999999998865 3589999999999999
Q ss_pred Hhc-c--------cCC------ch-HHHHHHHHHHhCC--------CCCCCcccHHHHHhhhhc
Q psy17738 276 ISN-I--------YTI------QN-QLITNIQTLNQGG--------FKCEILANTKTERLHMVL 315 (316)
Q Consensus 276 i~~-~--------~~~------s~-~i~~~~~~l~~~~--------~H~gi~gNe~AD~LAk~~ 315 (316)
|.+ | |.. .+ ++++.+.++.+.. ||+|++|||.||+|||+.
T Consensus 82 i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LAk~a 145 (166)
T 1ril_A 82 FTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQ 145 (166)
T ss_dssp HHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECCCCCGGGSCTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcCeEEEEEeeCCCCchhHHHHHHHHHHH
Confidence 998 2 321 12 3677777766542 799999999999999864
No 8
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.77 E-value=8.7e-19 Score=147.17 Aligned_cols=110 Identities=19% Similarity=0.136 Sum_probs=81.6
Q ss_pred ceEEEEcCCCC--CCCceEEEEEeCCC-eeEEEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHHHH
Q psy17738 200 HVRIYTDGSKD--EENAGCAFVIPDRN-ITKMFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQAI 276 (316)
Q Consensus 200 ~~~iytDGS~~--~~~~G~a~~~~~~~-~~~~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~~i 276 (316)
.+.||||||+. +|..|+|+++..++ ......+...+||++||++|+..||+.+ . ..++.|+|||++++++|
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~-~-----~~~v~I~tDS~~vi~~i 96 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA-E-----GKKLNVYTDSRYAFATA 96 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT-B-----TSEEEEEECCHHHHHHH
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc-c-----CceEEEEEchHHHHhhh
Confidence 58999999998 67788888775543 3223345668899999999999999998 2 57899999999999999
Q ss_pred hcc---cCCch-HHHHHH-HHHHhCC--------CCCC-----CcccHHHHHhhhhc
Q psy17738 277 SNI---YTIQN-QLITNI-QTLNQGG--------FKCE-----ILANTKTERLHMVL 315 (316)
Q Consensus 277 ~~~---~~~s~-~i~~~~-~~l~~~~--------~H~g-----i~gNe~AD~LAk~~ 315 (316)
-.. .+..+ ++++.+ +++.+.. ||+| ++|||.||+|||+.
T Consensus 97 w~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~a 153 (165)
T 3p1g_A 97 HVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREA 153 (165)
T ss_dssp HSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHH
T ss_pred hcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHH
Confidence 211 11222 344444 4443321 8999 99999999999864
No 9
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.75 E-value=1.3e-18 Score=141.42 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=86.9
Q ss_pred ceEEEEcCCCC--CCCceEEEEEeC--CCee--EEEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCC----cEEEEcCh
Q psy17738 200 HVRIYTDGSKD--EENAGCAFVIPD--RNIT--KMFSLDPKSSIFACELYAIYAALEYLHHPNNNTVE----NYVIISDS 269 (316)
Q Consensus 200 ~~~iytDGS~~--~~~~G~a~~~~~--~~~~--~~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~----~i~I~sDS 269 (316)
.+.||||||+. +|..|+|+++.+ +... .+..++ .+||+.||+.|+..||+.+.+.. .. ++.|+|||
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~---~~~~~~~v~i~tDS 78 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMFG---DKLVDMEVEVRMDS 78 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGGG---GGGTTCEEEEEESC
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHcC---CCCCCceEEEEeCh
Confidence 58999999998 467899999865 3332 222233 57999999999999999997754 44 99999999
Q ss_pred HHHHHHHhcccCCch----HHHHHHHHH-HhCC-----CCCCCcccHHHHHhhhhc
Q psy17738 270 QAALQAISNIYTIQN----QLITNIQTL-NQGG-----FKCEILANTKTERLHMVL 315 (316)
Q Consensus 270 ~~ai~~i~~~~~~s~----~i~~~~~~l-~~~~-----~H~gi~gNe~AD~LAk~~ 315 (316)
+++++.+.++|+..+ ++++.+.++ .+.. .|+-.+|||.||+|||..
T Consensus 79 ~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~LA~~a 134 (140)
T 3u3g_D 79 ELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVNEA 134 (140)
T ss_dssp HHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHHHHHHH
T ss_pred HHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHHHHHHH
Confidence 999999999886444 245566666 4442 488899999999999863
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.74 E-value=2.5e-18 Score=140.20 Aligned_cols=112 Identities=18% Similarity=0.173 Sum_probs=87.6
Q ss_pred ceEEEEcCCCC--CCCceEEEEEeCC---Cee--EEEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHH
Q psy17738 200 HVRIYTDGSKD--EENAGCAFVIPDR---NIT--KMFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAA 272 (316)
Q Consensus 200 ~~~iytDGS~~--~~~~G~a~~~~~~---~~~--~~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~a 272 (316)
.++||||||+. +|..|+|+++.+. ... ....++ .+||+.||+.|++.||+.+.+.. ..++.|+|||+++
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~~---~~~v~i~tDS~~v 78 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIG-RATNNVAEYRGLIAGLDDAVKLG---ATEAAVLMDSKLV 78 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHHT---CSEEEEEESCHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCC-CCchHHHHHHHHHHHHHHHHHCC---CceEEEEeChHHH
Confidence 48999999998 4678999988653 222 222233 78999999999999999998755 6889999999999
Q ss_pred HHHHhcccCCchH----HHHHHHHHHhCC-----CCCCCcccHHHHHhhhhc
Q psy17738 273 LQAISNIYTIQNQ----LITNIQTLNQGG-----FKCEILANTKTERLHMVL 315 (316)
Q Consensus 273 i~~i~~~~~~s~~----i~~~~~~l~~~~-----~H~gi~gNe~AD~LAk~~ 315 (316)
++.+.+.|...+. +++.++++.+.+ .|+-.+|||.||+||+..
T Consensus 79 v~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA~~a 130 (141)
T 3hst_B 79 VEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLANDA 130 (141)
T ss_dssp HHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHHHHH
T ss_pred HHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHHHHH
Confidence 9999998755543 345566666553 488889999999999863
No 11
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.71 E-value=2.2e-17 Score=138.51 Aligned_cols=112 Identities=16% Similarity=0.110 Sum_probs=79.9
Q ss_pred CceEEEEcCCCC--CCC-----ceEEEEEeCCC----eeEEEeCC-CCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEE
Q psy17738 199 THVRIYTDGSKD--EEN-----AGCAFVIPDRN----ITKMFSLD-PKSSIFACELYAIYAALEYLHHPNNNTVENYVII 266 (316)
Q Consensus 199 ~~~~iytDGS~~--~~~-----~G~a~~~~~~~----~~~~~~l~-~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~ 266 (316)
..+.|||||||. +|+ .|+|+|+..++ ....+..+ ...+++.||+.|+..||+.+... +.+|.|+
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~----~~~v~I~ 81 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI----PGPVLVI 81 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS----SSCEEEE
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC----CCeEEEE
Confidence 458999999998 344 79999885432 23333332 45778889999998888876553 4679999
Q ss_pred cChHHHHHHHhcc--------cCC------ch-HHHHHHHHHH-hC--------CCCCCC------cccHHHHHhhhh
Q psy17738 267 SDSQAALQAISNI--------YTI------QN-QLITNIQTLN-QG--------GFKCEI------LANTKTERLHMV 314 (316)
Q Consensus 267 sDS~~ai~~i~~~--------~~~------s~-~i~~~~~~l~-~~--------~~H~gi------~gNe~AD~LAk~ 314 (316)
|||++++++|..| |.. .+ ++++.+.++. .. .||.|+ +|||+||+||++
T Consensus 82 TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~ 159 (165)
T 2lsn_A 82 TDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQ 159 (165)
T ss_dssp ESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHH
T ss_pred eChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHH
Confidence 9999999999864 221 12 4666666543 33 179984 689999999986
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.69 E-value=4.3e-17 Score=134.51 Aligned_cols=112 Identities=18% Similarity=0.189 Sum_probs=85.3
Q ss_pred eEEEEcCCCC---CCCceE-EEEEeCC-CeeEEEe--CC---CCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChH
Q psy17738 201 VRIYTDGSKD---EENAGC-AFVIPDR-NITKMFS--LD---PKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQ 270 (316)
Q Consensus 201 ~~iytDGS~~---~~~~G~-a~~~~~~-~~~~~~~--l~---~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~ 270 (316)
+.||||||+. +|+.|+ |+++.++ .....+. ++ ..+||+.||+.|+..||+.+.+.. ..++.|+|||+
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g---~~~v~i~tDS~ 78 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLG---ISSPIIKGDSQ 78 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHT---CCSCEEEESCH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcC---CCEEEEEeChH
Confidence 6899999997 377886 9888653 3323232 33 378999999999999999998754 57899999999
Q ss_pred HHHHHHhcccCCch----HHHHHHHHHHhCC----CCCCCcccHHHHHhhhhc
Q psy17738 271 AALQAISNIYTIQN----QLITNIQTLNQGG----FKCEILANTKTERLHMVL 315 (316)
Q Consensus 271 ~ai~~i~~~~~~s~----~i~~~~~~l~~~~----~H~gi~gNe~AD~LAk~~ 315 (316)
++++.+.++|..++ .+++.+..+.+.. .|+-.++||.||+||+..
T Consensus 79 ~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~~v~~~~V~~~~N~~AD~LA~~a 131 (149)
T 2ehg_A 79 LVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPREENKEADRLSRVA 131 (149)
T ss_dssp HHHHHHTTSSCCCCTTHHHHHHHHHHHHHHHTCEEEECCGGGCHHHHHHHHHH
T ss_pred HHHHHHhCccccCCHHHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHHHHHH
Confidence 99999999876443 3555555554432 377779999999999864
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.66 E-value=2.1e-16 Score=156.75 Aligned_cols=109 Identities=20% Similarity=0.179 Sum_probs=84.2
Q ss_pred CCceEEEEcCCCC--CCCceEEEEEeCCCeeEEEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHHH
Q psy17738 198 ETHVRIYTDGSKD--EENAGCAFVIPDRNITKMFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQA 275 (316)
Q Consensus 198 ~~~~~iytDGS~~--~~~~G~a~~~~~~~~~~~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~~ 275 (316)
.+.+.||||||+. +|..|+|+++..++.. ...++ .+||+.||+.|++.||+. . ..++.|+|||+++++.
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~-~~~~~-~~TNn~aEl~A~i~aL~~----~---~~~v~I~tDS~~v~~~ 504 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDK-VKKLE-QTTNQQAELEAFAMALTD----S---GPKVNIIVDSQYVMGI 504 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEE-EEEES-SCCHHHHHHHHHHHHHHT----S---CSEEEEEESCHHHHHH
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEe-eccCC-CCCHHHHHHHHHHHHHHc----C---CCeEEEEEehHHHHHH
Confidence 3569999999998 3457888888665432 33343 689999999999999997 2 5789999999999999
Q ss_pred HhcccCCch-HHHHHHH-HHHhCC--------CCCCCcccHHHHHhhhhc
Q psy17738 276 ISNIYTIQN-QLITNIQ-TLNQGG--------FKCEILANTKTERLHMVL 315 (316)
Q Consensus 276 i~~~~~~s~-~i~~~~~-~l~~~~--------~H~gi~gNe~AD~LAk~~ 315 (316)
|.++...++ .+++.+. .+.+.. +|+|++|||+||+||++.
T Consensus 505 i~~~~~~~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 554 (555)
T 1mu2_A 505 VASQPTESESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQG 554 (555)
T ss_dssp HHTCCSEESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTT
T ss_pred HhcccccccHHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhh
Confidence 999765455 3554443 334432 799999999999999974
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.65 E-value=1.7e-16 Score=157.61 Aligned_cols=109 Identities=24% Similarity=0.239 Sum_probs=83.4
Q ss_pred CCceEEEEcCCCC--CCCceEEEEEeCCCeeEEEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHHH
Q psy17738 198 ETHVRIYTDGSKD--EENAGCAFVIPDRNITKMFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQA 275 (316)
Q Consensus 198 ~~~~~iytDGS~~--~~~~G~a~~~~~~~~~~~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~~ 275 (316)
.+.+.||||||+. +|..|+|+++.++.. ..+.. ..+||+.||+.|++.||+.+ ..++.|+|||++|++.
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~-~~~~~-~~~TNn~aEl~Ai~~aL~~~-------~~~v~I~tDS~~vi~~ 507 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQ-KVVPL-TNTTNQKTELQAIYLALQDS-------GLEVNIVTDSQYALGI 507 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCE-EEEEE-CSCCHHHHHHHHHHHHHHHS-------CSEEEEEECCHHHHHH
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcE-EEecC-CCCCHHHHHHHHHHHHHHhC-------CCcEEEEeChHHHHHH
Confidence 3468999999997 355788888865543 23343 37899999999999999998 3789999999999999
Q ss_pred HhcccCCch-HHHHH-HHHHHhCC--------CCCCCcccHHHHHhhhhc
Q psy17738 276 ISNIYTIQN-QLITN-IQTLNQGG--------FKCEILANTKTERLHMVL 315 (316)
Q Consensus 276 i~~~~~~s~-~i~~~-~~~l~~~~--------~H~gi~gNe~AD~LAk~~ 315 (316)
|.++...++ ++++. ++.+.+.. +|+|++|||+||+||++.
T Consensus 508 i~~~~~~~~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 508 IQAQPDKSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HTTCCSEESSHHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HhcCCccCCHHHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 999876544 45544 34555542 799999999999999863
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.41 E-value=4.4e-14 Score=115.40 Aligned_cols=108 Identities=16% Similarity=0.101 Sum_probs=79.1
Q ss_pred CCceEEEEcCCCC--CCCceEEEEEeCCCeeEEEeCC-CCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHHH
Q psy17738 198 ETHVRIYTDGSKD--EENAGCAFVIPDRNITKMFSLD-PKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAALQ 274 (316)
Q Consensus 198 ~~~~~iytDGS~~--~~~~G~a~~~~~~~~~~~~~l~-~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai~ 274 (316)
.+.+.||||||+. +|..|+|+|+..+......+.+ ..+||+.||++|++.||+.+.+.. . ++.|+|||+++++
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~---~-~v~i~tDS~~vi~ 84 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERN---S-RKPIYSNSQTAIK 84 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTT---C-CCCEEESCHHHHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCC---C-eEEEEEehHHHHH
Confidence 4568999999997 5778999998643332222211 257999999999999999998754 3 8999999999999
Q ss_pred HHhcccC-C------ch-HHHHHHHHH----HhCC-------CCCCCcccHHHH
Q psy17738 275 AISNIYT-I------QN-QLITNIQTL----NQGG-------FKCEILANTKTE 309 (316)
Q Consensus 275 ~i~~~~~-~------s~-~i~~~~~~l----~~~~-------~H~gi~gNe~AD 309 (316)
.+.+.+. . .+ ++.+.++++ .... +|.+.-||.-||
T Consensus 85 w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~~~~~kw~~~~~ge~pad 138 (142)
T 1zbf_A 85 WVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp HHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTC
T ss_pred HHHcCCccCCCCCCcccHHHHHHHHHHHHHHhhCCCceeEEEeccCccCcCccc
Confidence 9998762 1 12 355554443 3332 788888998888
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.29 E-value=1.9e-12 Score=104.04 Aligned_cols=77 Identities=18% Similarity=0.085 Sum_probs=59.5
Q ss_pred CCceEEEEcCCCC--CCCceEEEEEeCCCe-e-EEEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcChHHHH
Q psy17738 198 ETHVRIYTDGSKD--EENAGCAFVIPDRNI-T-KMFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDSQAAL 273 (316)
Q Consensus 198 ~~~~~iytDGS~~--~~~~G~a~~~~~~~~-~-~~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS~~ai 273 (316)
+....||||||+. +|..|+|+|+.+... . ....++ .+||+.||++|++.||+.+.+.. .++.|+|||++++
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~-~tTNN~aEl~A~i~aL~~l~~~~----~~v~i~tDSqyVi 77 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERN----SRKPIYSNSQTAI 77 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHTT----CCCCEEESCHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCC-CCchHHHHHHHHHHHHHHHHhCC----CCEEEEcchHHHH
Confidence 4567899999998 577888666654332 2 222233 78999999999999999997743 3489999999999
Q ss_pred HHHhcc
Q psy17738 274 QAISNI 279 (316)
Q Consensus 274 ~~i~~~ 279 (316)
+.|.++
T Consensus 78 ~wi~~~ 83 (134)
T 4htu_A 78 KWVKDK 83 (134)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 999875
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=75.96 E-value=1.1 Score=42.57 Aligned_cols=76 Identities=11% Similarity=-0.028 Sum_probs=47.0
Q ss_pred CCceEEEEcCCCCCCCceEEEEEeC-CC--e-e--EEEeCC---CCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcC
Q psy17738 198 ETHVRIYTDGSKDEENAGCAFVIPD-RN--I-T--KMFSLD---PKSSIFACELYAIYAALEYLHHPNNNTVENYVIISD 268 (316)
Q Consensus 198 ~~~~~iytDGS~~~~~~G~a~~~~~-~~--~-~--~~~~l~---~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sD 268 (316)
...+.+|||+|.. +.|+ |+... ++ . . .+..+. ...+.++-|+.||..|++.+...- .+.++.|+||
T Consensus 344 ~~~~~l~~DAS~~--~~ga-vL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl--~g~~~~v~tD 418 (455)
T 1rw3_A 344 TKPFELFVDEKQG--YAKG-VLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLT--MGQPLVIKAP 418 (455)
T ss_dssp CCTTSCEEEEEEC--SSSB-EECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGG--CSSCEEEECS
T ss_pred CCcEEEEEeccCC--ccee-EEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHc--CCCcEEEEec
Confidence 3457899999853 3333 33321 11 1 1 112222 356788999999999998875531 1578999999
Q ss_pred hHHHHHHHhcc
Q psy17738 269 SQAALQAISNI 279 (316)
Q Consensus 269 S~~ai~~i~~~ 279 (316)
+. ++..+.+.
T Consensus 419 h~-~~~~l~~~ 428 (455)
T 1rw3_A 419 HA-VEALVKQP 428 (455)
T ss_dssp SC-TTTTSSST
T ss_pred Ch-HHHHhCCC
Confidence 97 66555543
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=56.28 E-value=11 Score=35.30 Aligned_cols=79 Identities=4% Similarity=-0.097 Sum_probs=44.9
Q ss_pred CCceEEEEcCCCCCCCceEEEEEeCC--Cee--EEEeCCCCCCchHHHHHH-HHHHHHHhcCC-CCCCCCcEEEEcChHH
Q psy17738 198 ETHVRIYTDGSKDEENAGCAFVIPDR--NIT--KMFSLDPKSSIFACELYA-IYAALEYLHHP-NNNTVENYVIISDSQA 271 (316)
Q Consensus 198 ~~~~~iytDGS~~~~~~G~a~~~~~~--~~~--~~~~l~~~~tv~~AEl~A-i~~Al~~~~~~-~~~~~~~i~I~sDS~~ 271 (316)
...+.++||+|... .+|.+..+. ... ..+.-......++-|++| +..||+..... -|..+..+.++||.+.
T Consensus 322 ~~~~~l~~das~~g---~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~ 398 (428)
T 2zd1_B 322 SKDLIAEIQKQGQG---QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW 398 (428)
T ss_dssp TSCCEEEEEEEETT---EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHH
T ss_pred CCCEEEEEecCCCC---cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHH
Confidence 34588999999531 224444332 222 233322334455666666 99999865331 1234667888999987
Q ss_pred HHHHHhccc
Q psy17738 272 ALQAISNIY 280 (316)
Q Consensus 272 ai~~i~~~~ 280 (316)
. .-..+.|
T Consensus 399 ~-~~~~~~~ 406 (428)
T 2zd1_B 399 E-TWWTEYW 406 (428)
T ss_dssp H-HHHHHHC
T ss_pred H-HHHHhcc
Confidence 4 4444443
No 19
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=48.09 E-value=5.5 Score=21.03 Aligned_cols=14 Identities=21% Similarity=0.225 Sum_probs=11.4
Q ss_pred CcccHHHHHhhhhc
Q psy17738 302 ILANTKTERLHMVL 315 (316)
Q Consensus 302 i~gNe~AD~LAk~~ 315 (316)
||.-..||+|||.|
T Consensus 4 ipsydfadelakll 17 (26)
T 1sn9_A 4 IPSYDFADELAKLL 17 (26)
T ss_dssp BTTBCHHHHHHHHH
T ss_pred CCccchHHHHHHHH
Confidence 56678899999975
No 20
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=36.54 E-value=73 Score=24.40 Aligned_cols=54 Identities=15% Similarity=0.033 Sum_probs=36.5
Q ss_pred CCceEEEEEeCCCeeEEEeCCCCCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcCh
Q psy17738 212 ENAGCAFVIPDRNITKMFSLDPKSSIFACELYAIYAALEYLHHPNNNTVENYVIISDS 269 (316)
Q Consensus 212 ~~~G~a~~~~~~~~~~~~~l~~~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS 269 (316)
-.+|++++..++.+........+..-.-||..||..|...- ......+.+++|.
T Consensus 27 f~VGAal~~~dG~i~~G~NvE~~~~t~cAE~~Ai~~A~~~G----~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 27 YSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAAA----AGNLTCIVAIGNE 80 (130)
T ss_dssp SCEEEEEEETTSCEEEEECCCCTTTCCCHHHHHHHHHHHTT----CCCEEEEEEEETT
T ss_pred CCEEEEEEecCCeEEEEeccccCCcccCHHHHHHHHHHHcC----CCceEEEEEEECC
Confidence 47899988777766554444433335569999999998731 1236678888874
No 21
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Probab=34.70 E-value=26 Score=31.31 Aligned_cols=43 Identities=9% Similarity=0.036 Sum_probs=34.6
Q ss_pred cchhch-hHHHHHHhhcccccCCCCCCchHHHHHHHHHHHhhhhhhhhcCC
Q psy17738 2 RSAIDY-TSMYRQINQIPRRNAYTWCSAEQVMELFGDLYLHTIDIIKVLNP 51 (316)
Q Consensus 2 ~~~~~~-~~~~~~~~~L~~l~~~~~G~~~~~~~ly~a~v~p~l~Yg~~vW~ 51 (316)
|..+.| ++|++.+..||.|.. ....-|..||-|++++|.++=.
T Consensus 64 ~~MlgY~G~AK~~LD~lRslns-------~A~ltY~~cv~~VfEWCvsins 107 (318)
T 1qoy_A 64 RFKQEYSQAASVLVGDIKTLLM-------DSQDKYFEATQTVYEWCGVATQ 107 (318)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcCCcHHHHhhHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 455678 899999999998843 3338899999999999998754
No 22
>1kn6_A Prohormone convertase 1; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Mus musculus} SCOP: d.58.3.3
Probab=28.67 E-value=18 Score=26.24 Aligned_cols=14 Identities=7% Similarity=-0.021 Sum_probs=11.1
Q ss_pred cccHHHHHhhhhcC
Q psy17738 303 LANTKTERLHMVLS 316 (316)
Q Consensus 303 ~gNe~AD~LAk~~~ 316 (316)
.|+|.||++|+..|
T Consensus 21 ~g~~~A~~iA~k~G 34 (90)
T 1kn6_A 21 GGQEAASAIAEELG 34 (90)
T ss_dssp STHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHcC
Confidence 46799999998654
No 23
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=28.40 E-value=1.3e+02 Score=23.57 Aligned_cols=55 Identities=20% Similarity=0.087 Sum_probs=36.6
Q ss_pred CCCceEEEEEeCCCeeEEEeCCC--CCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcCh
Q psy17738 211 EENAGCAFVIPDRNITKMFSLDP--KSSIFACELYAIYAALEYLHHPNNNTVENYVIISDS 269 (316)
Q Consensus 211 ~~~~G~a~~~~~~~~~~~~~l~~--~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS 269 (316)
+..+|++++..+|.+........ +..-.-||..||..|...- . .....+.|++|.
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~G-~---~~l~~i~v~~~~ 91 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISEG-Y---KDFRAIAISSDL 91 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHTT-C---CCEEEEEEEESC
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhCC-C---CceEEEEEEeCC
Confidence 45799998877777665444431 1123459999999998642 1 236788898874
No 24
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=22.63 E-value=1.5e+02 Score=22.84 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=34.9
Q ss_pred CceEEEEEeCCCeeEEEeCCC--CCCchHHHHHHHHHHHHHhcCCCCCCCCcEEEEcCh
Q psy17738 213 NAGCAFVIPDRNITKMFSLDP--KSSIFACELYAIYAALEYLHHPNNNTVENYVIISDS 269 (316)
Q Consensus 213 ~~G~a~~~~~~~~~~~~~l~~--~~tv~~AEl~Ai~~Al~~~~~~~~~~~~~i~I~sDS 269 (316)
.+|++++..++.+....-... +....-||..||..|...- . .....+.|++|+
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~G-~---~~~~~~~l~~~~ 79 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSEG-D---TEFQMLAVAADT 79 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHHT-C---CCEEEEEEEESC
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHCC-C---CCeEEEEEEeCC
Confidence 688888776776654443431 2223559999999998752 2 236778888873
No 25
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=22.50 E-value=29 Score=18.99 Aligned_cols=15 Identities=7% Similarity=-0.119 Sum_probs=13.6
Q ss_pred HHHHHHHHhhhhhhh
Q psy17738 33 ELFGDLYLHTIDIIK 47 (316)
Q Consensus 33 ~ly~a~v~p~l~Yg~ 47 (316)
-+|-+++.|.+.||.
T Consensus 8 FlyFa~l~paIaFGg 22 (26)
T 1btq_A 8 FIYFAALSPAITFGX 22 (26)
T ss_pred HHHHHHHcchhcccc
Confidence 689999999999985
No 26
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=20.75 E-value=2e+02 Score=19.97 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEcCCCCCCCceEEEEE
Q psy17738 185 IIKSNFLAILQNYETHVRIYTDGSKDEENAGCAFVI 220 (316)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~iytDGS~~~~~~G~a~~~ 220 (316)
..++...+|+.. .+.+.-|.||...+|+.|+-+|.
T Consensus 46 vLr~~V~~~L~~-~~~V~~f~~a~~~~GG~Gat~V~ 80 (83)
T 2zqe_A 46 ALRQAIREALRR-DKRVESFADAPPGEGGHGVTVVA 80 (83)
T ss_dssp HHHHHHHHHHHH-CTTEEEEEECCTTTTGGGEEEEE
T ss_pred HHHHHHHHHHhc-CCceeEEEEcCcccCCCEEEEEE
Confidence 467778888875 46789999999999999998875
Done!