BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17740
         (384 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
           Domains From Human Kruppel-Like Factor 5
          Length = 100

 Score =  129 bits (324), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/87 (65%), Positives = 66/87 (75%)

Query: 260 RRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHT 319
           +RRI  C+Y  C K Y KSSHLKAH+RTHTGE+P+ C W GC  RF+RSDEL+RH R HT
Sbjct: 12  KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71

Query: 320 GEKKFGCSICNRRFMRSDHLAKHVKRH 346
           G K F C +CNR F RSDHLA H+KRH
Sbjct: 72  GAKPFQCGVCNRSFSRSDHLALHMKRH 98



 Score = 55.1 bits (131), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSI--CNRRFMRSDHLAKHVKRHS 347
           R   C + GC + +++S  L  H RTHTGEK + C+   C+ RF RSD L +H ++H+
Sbjct: 14  RIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71


>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
           To Its Target Dna
          Length = 90

 Score =  127 bits (318), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/87 (62%), Positives = 64/87 (73%)

Query: 260 RRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHT 319
           R     C+Y  CGK Y KSSHLKAH+RTHTGE+P+ C W GCG +F+RSDEL+RH R HT
Sbjct: 3   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62

Query: 320 GEKKFGCSICNRRFMRSDHLAKHVKRH 346
           G + F C  C+R F RSDHLA H+KRH
Sbjct: 63  GHRPFQCQKCDRAFSRSDHLALHMKRH 89



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 8/63 (12%)

Query: 287 THTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSI--CNRRFMRSDHLAKHVK 344
           THT      C + GCG+ +++S  L  H RTHTGEK + C    C  +F RSD L +H +
Sbjct: 6   THT------CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 59

Query: 345 RHS 347
           +H+
Sbjct: 60  KHT 62


>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
           To Its Target Dna
          Length = 89

 Score =  126 bits (317), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/87 (62%), Positives = 64/87 (73%)

Query: 260 RRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHT 319
           R     C+Y  CGK Y KSSHLKAH+RTHTGE+P+ C W GCG +F+RSDEL+RH R HT
Sbjct: 2   RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61

Query: 320 GEKKFGCSICNRRFMRSDHLAKHVKRH 346
           G + F C  C+R F RSDHLA H+KRH
Sbjct: 62  GHRPFQCQKCDRAFSRSDHLALHMKRH 88



 Score = 56.6 bits (135), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 8/63 (12%)

Query: 287 THTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSI--CNRRFMRSDHLAKHVK 344
           THT      C + GCG+ +++S  L  H RTHTGEK + C    C  +F RSD L +H +
Sbjct: 5   THT------CDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYR 58

Query: 345 RHS 347
           +H+
Sbjct: 59  KHT 61


>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
 pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
           Finger Domain Bound To Dna
          Length = 119

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/87 (55%), Positives = 58/87 (66%)

Query: 261 RRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
           +R F C Y  C K YFK SHL+ H R HTGE+P+ C +  C RRFSRSD+L RH+R HTG
Sbjct: 4   KRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG 63

Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRHS 347
            K F C  C R+F RSDHL  H + H+
Sbjct: 64  VKPFQCKTCQRKFSRSDHLKTHTRTHT 90



 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 2/55 (3%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTH 318
           F+C  + C + + +S HLK H RTHTGE+PF C+W  C ++F+RSDEL RH   H
Sbjct: 67  FQC--KTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119


>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
           From Human Krueppel-Like Factor 10
          Length = 72

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/68 (64%), Positives = 51/68 (75%)

Query: 251 SNKPATNDPRRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDE 310
           S+ P  +  R R   C++  CGK YFKSSHLKAH RTHTGE+PF C W GC RRF+RSDE
Sbjct: 5   SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64

Query: 311 LSRHKRTH 318
           LSRH+RTH
Sbjct: 65  LSRHRRTH 72



 Score = 58.9 bits (141), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSI--CNRRFMRSDHLAKHVKRH 346
           R  +C   GCG+ + +S  L  H RTHTGEK F CS   C RRF RSD L++H + H
Sbjct: 16  RSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72


>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
 pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
           To Dna
          Length = 87

 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 56/76 (73%), Gaps = 2/76 (2%)

Query: 271 CGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICN 330
           CGK++ +SS+L+ H RTHTGE+P+ C    CG+ FS+S +L +H+RTHTGEK + C  C 
Sbjct: 10  CGKSFSQSSNLQKHQRTHTGEKPYKC--PECGKSFSQSSDLQKHQRTHTGEKPYKCPECG 67

Query: 331 RRFMRSDHLAKHVKRH 346
           + F RSDHL++H + H
Sbjct: 68  KSFSRSDHLSRHQRTH 83



 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 7/87 (8%)

Query: 236 PRENKEIVTSNKIKKSNKPATNDPRRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFL 295
           P   K    S+ ++K  +  T +   + ++C    CGK++ +SS L+ H RTHTGE+P+ 
Sbjct: 8   PECGKSFSQSSNLQKHQRTHTGE---KPYKC--PECGKSFSQSSDLQKHQRTHTGEKPYK 62

Query: 296 CQWTGCGRRFSRSDELSRHKRTHTGEK 322
           C    CG+ FSRSD LSRH+RTH  +K
Sbjct: 63  C--PECGKSFSRSDHLSRHQRTHQNKK 87



 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 2/59 (3%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKD 349
           E+P+ C    CG+ FS+S  L +H+RTHTGEK + C  C + F +S  L KH + H+ +
Sbjct: 2   EKPYKC--PECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE 58


>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
 pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
          Length = 90

 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 55/85 (64%), Gaps = 2/85 (2%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           R + C  E+C + +  SS+L  H+R HTG++PF C+   C R FSRSD L+ H RTHTGE
Sbjct: 3   RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 60

Query: 322 KKFGCSICNRRFMRSDHLAKHVKRH 346
           K F C IC R+F RSD   +H K H
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIH 85



 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 37/57 (64%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
           ERP+ C    C RRFS S  L+RH R HTG+K F C IC R F RSDHL  H++ H+
Sbjct: 2   ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58



 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           F+C    C +N+ +S HL  H+RTHTGE+PF C    CGR+F+RSDE  RH + H  +K
Sbjct: 35  FQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLRQK 89


>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
 pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
          Length = 90

 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 55/85 (64%), Gaps = 2/85 (2%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           R + C  E+C + + +S+ L  H+R HTG++PF C+   C R FSRSD L+ H RTHTGE
Sbjct: 3   RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 60

Query: 322 KKFGCSICNRRFMRSDHLAKHVKRH 346
           K F C IC R+F RSD   +H K H
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIH 85



 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 39/57 (68%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
           ERP+ C    C RRFSRS EL+RH R HTG+K F C IC R F RSDHL  H++ H+
Sbjct: 2   ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58



 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           F+C    C +N+ +S HL  H+RTHTGE+PF C    CGR+F+RSDE  RH + H  +K
Sbjct: 35  FQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLRQK 89


>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
 pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
 pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
          Length = 90

 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 55/85 (64%), Gaps = 2/85 (2%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           R + C  E+C + + +S+ L  H+R HTG++PF C+   C R FSRSD L+ H RTHTGE
Sbjct: 3   RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 60

Query: 322 KKFGCSICNRRFMRSDHLAKHVKRH 346
           K F C IC R+F RSD   +H K H
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIH 85



 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 39/57 (68%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
           ERP+ C    C RRFSRS +L+RH R HTG+K F C IC R F RSDHL  H++ H+
Sbjct: 2   ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58



 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           F+C    C +N+ +S HL  H+RTHTGE+PF C    CGR+F+RSDE  RH + H  +K
Sbjct: 35  FQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLRQK 89


>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
 pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 54/85 (63%), Gaps = 2/85 (2%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           R + C  E+C + + +S  L  H+R HTG++PF C+   C R FSRSD L+ H RTHTGE
Sbjct: 3   RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 60

Query: 322 KKFGCSICNRRFMRSDHLAKHVKRH 346
           K F C IC R+F RSD   +H K H
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIH 85



 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 40/57 (70%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
           ERP+ C    C RRFSRSDEL+RH R HTG+K F C IC R F RSDHL  H++ H+
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58



 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           F+C    C +N+ +S HL  H+RTHTGE+PF C    CGR+F+RSDE  RH + H  +K
Sbjct: 35  FQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLRQK 89


>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
 pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
           Dna
          Length = 87

 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 54/85 (63%), Gaps = 2/85 (2%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           R + C  E+C + + +S  L  H+R HTG++PF C+   C R FSRSD L+ H RTHTGE
Sbjct: 2   RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 59

Query: 322 KKFGCSICNRRFMRSDHLAKHVKRH 346
           K F C IC R+F RSD   +H K H
Sbjct: 60  KPFACDICGRKFARSDERKRHTKIH 84



 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 41/59 (69%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKD 349
           ERP+ C    C RRFSRSDEL+RH R HTG+K F C IC R F RSDHL  H++ H+ +
Sbjct: 1   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 59


>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
          Length = 90

 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 54/85 (63%), Gaps = 2/85 (2%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           R + C  E+C + + +S  L  H+R HTG++PF C+   C R FSRSD L+ H RTHTGE
Sbjct: 3   RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 60

Query: 322 KKFGCSICNRRFMRSDHLAKHVKRH 346
           K F C IC R+F RSD   +H K H
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIH 85



 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 39/59 (66%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKD 349
           ERP+ C    C RRFS+S  L+RH R HTG+K F C IC R F RSDHL  H++ H+ +
Sbjct: 2   ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60



 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           F+C    C +N+ +S HL  H+RTHTGE+PF C    CGR+F+RSDE  RH + H  +K
Sbjct: 35  FQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHTKIHLRQK 89


>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
           Zif268- Dna Complex At 2.1 Angstroms
          Length = 87

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 54/85 (63%), Gaps = 2/85 (2%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           R + C  E+C + + +S  L  H+R HTG++PF C+   C R FSRSD L+ H RTHTGE
Sbjct: 3   RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTHTGE 60

Query: 322 KKFGCSICNRRFMRSDHLAKHVKRH 346
           K F C IC R+F RSD   +H K H
Sbjct: 61  KPFACDICGRKFARSDERKRHTKIH 85



 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 41/59 (69%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKD 349
           ERP+ C    C RRFSRSDEL+RH R HTG+K F C IC R F RSDHL  H++ H+ +
Sbjct: 2   ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE 60


>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
           Human Zinc Finger Protein Zic 3
          Length = 155

 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 47/114 (41%), Positives = 63/114 (55%), Gaps = 10/114 (8%)

Query: 241 EIVTSNKIKKSNKPATNDPRRRIFECNYENC---GKNYFKSSHLKAHMRTHTGERPFLCQ 297
           E+VT   ++    P  N+       C +E C   GK++     L  H+R HTGE+PF C 
Sbjct: 40  ELVTHVTMEHVGGPEQNN-----HVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCP 94

Query: 298 WTGCGRRFSRSDELSRHKRTHTGEKKFGCSI--CNRRFMRSDHLAKHVKRHSKD 349
           + GCG+ F+RS+ L  HKRTHTGEK F C    C+RRF  S    KH+  H+ D
Sbjct: 95  FPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148



 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 231 FFAQPPRENKEIVTSNKIKKSNKPATNDPRRRIFECNYENCGKNYFKSSHLKAHMRTHTG 290
           ++ + PRE K      K+    +  T +   + F C +  CGK + +S +LK H RTHTG
Sbjct: 61  YWEECPREGKSFKAKYKLVNHIRVHTGE---KPFPCPFPGCGKIFARSENLKIHKRTHTG 117

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           E+PF C++ GC RRF+ S +  +H   HT +K
Sbjct: 118 EKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149


>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
          Length = 190

 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 51/78 (65%), Gaps = 2/78 (2%)

Query: 270 NCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSIC 329
            CGK++ + +HL+AH RTHTGE+P+ C    CG+ FSR D L  H+RTHTGEK + C  C
Sbjct: 110 ECGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLHTHQRTHTGEKPYKCPEC 167

Query: 330 NRRFMRSDHLAKHVKRHS 347
            + F R D L  H + H+
Sbjct: 168 GKSFSRRDALNVHQRTHT 185



 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 4/129 (3%)

Query: 255 ATNDPRRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRH 314
           A  +P  + + C    CGK++ +S HL  H RTHTGE+P+ C    CG+ FS   +L+RH
Sbjct: 13  AALEPGEKPYAC--PECGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRH 68

Query: 315 KRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSNIGTPSNVLRNANVAFNMM 374
           +RTHTGEK + C  C + F +  +L  H + H+ +        G   + L +        
Sbjct: 69  QRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTH 128

Query: 375 VTNLPHPVP 383
               P+  P
Sbjct: 129 TGEKPYKCP 137



 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 2/53 (3%)

Query: 270 NCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
            CGK++ +  +L  H RTHTGE+P+ C    CG+ FSR D L+ H+RTHTG+K
Sbjct: 138 ECGKSFSREDNLHTHQRTHTGEKPYKCPE--CGKSFSRRDALNVHQRTHTGKK 188



 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 276 FKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMR 335
           F SS   A      GE+P+ C    CG+ FSRSD L+ H+RTHTGEK + C  C + F  
Sbjct: 4   FGSSSSVAQAALEPGEKPYACPE--CGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61

Query: 336 SDHLAKHVKRHSKD 349
              L +H + H+ +
Sbjct: 62  KKDLTRHQRTHTGE 75


>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
 pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
           Dna
          Length = 73

 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 39/56 (69%)

Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
           RP+ C    C RRFSRSDEL+RH R HTG+K F C IC R F RSDHL  H++ H+
Sbjct: 18  RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73



 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 2/61 (3%)

Query: 259 PRRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTH 318
           P+ R + C  E+C + + +S  L  H+R HTG++PF C+   C R FSRSD L+ H RTH
Sbjct: 15  PKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRI--CMRNFSRSDHLTTHIRTH 72

Query: 319 T 319
           T
Sbjct: 73  T 73


>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
           To The Adeno-Associated Virus P5 Initiator Element
          Length = 124

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/95 (41%), Positives = 55/95 (57%), Gaps = 6/95 (6%)

Query: 256 TNDPRRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHK 315
           T+ PR  +       CGK + +SS LK H   HTGE+PF C + GCG+RFS    L  H 
Sbjct: 29  THGPRVHV----CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHV 84

Query: 316 RTHTGEKKFGCSI--CNRRFMRSDHLAKHVKRHSK 348
           R HTG++ + C    CN++F +S +L  H+  H+K
Sbjct: 85  RIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAK 119



 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 239 NKEIVTSNKIKKSNKPATNDPRRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQW 298
            K  V S+K+K+     T +   + F+C +E CGK +    +L+ H+R HTG+RP++C +
Sbjct: 41  GKAFVESSKLKRHQLVHTGE---KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPF 97

Query: 299 TGCGRRFSRSDELSRHKRTHTGEK 322
            GC ++F++S  L  H  TH   K
Sbjct: 98  DGCNKKFAQSTNLKSHILTHAKAK 121


>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
 pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
           (Tatazf;clone #6)
          Length = 90

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 2/85 (2%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           R + C  E+C + + + ++L  H+R HTG++PF C+   C R FS+   L+ H RTHTGE
Sbjct: 3   RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQQASLNAHIRTHTGE 60

Query: 322 KKFGCSICNRRFMRSDHLAKHVKRH 346
           K F C IC R+F       +H K H
Sbjct: 61  KPFACDICGRKFATLHTRTRHTKIH 85



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 33/59 (55%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKD 349
           ERP+ C    C RRFS+   L  H R HTG+K F C IC R F +   L  H++ H+ +
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE 60



 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           F+C    C +N+ + + L AH+RTHTGE+PF C    CGR+F+     +RH + H  +K
Sbjct: 35  FQCRI--CMRNFSQQASLNAHIRTHTGEKPFACDI--CGRKFATLHTRTRHTKIHLRQK 89


>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
 pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
           #2)
          Length = 90

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 2/85 (2%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           R + C  E+C + + + ++L  H+R HTG++PF C+   C R FS+   L++H RTHTGE
Sbjct: 3   RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRI--CMRNFSQHTGLNQHIRTHTGE 60

Query: 322 KKFGCSICNRRFMRSDHLAKHVKRH 346
           K F C IC R+F       +H K H
Sbjct: 61  KPFACDICGRKFATLHTRDRHTKIH 85



 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKD 349
           ERP+ C    C RRFS+   L  H R HTG+K F C IC R F +   L +H++ H+ +
Sbjct: 2   ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE 60



 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           F+C    C +N+ + + L  H+RTHTGE+PF C    CGR+F+      RH + H  +K
Sbjct: 35  FQCRI--CMRNFSQHTGLNQHIRTHTGEKPFACDI--CGRKFATLHTRDRHTKIHLRQK 89


>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
          Length = 155

 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 54/82 (65%), Gaps = 3/82 (3%)

Query: 266 CNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHK-RTHTGEKKF 324
           C +E C K+Y +  +LK H+R+HTGE+P++C+  GC + FS + + ++H+ RTH+ EK +
Sbjct: 70  CTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPY 129

Query: 325 GCSI--CNRRFMRSDHLAKHVK 344
            C +  C +R+     L KHVK
Sbjct: 130 VCKLPGCTKRYTDPSSLRKHVK 151



 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 5/90 (5%)

Query: 261 RRIFECNYENCGKNY--FKSSH-LKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRT 317
           R+ F C++  C +    FK+ + L  HMR HTGE+P  C + GC + +SR + L  H R+
Sbjct: 32  RKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91

Query: 318 HTGEKKFGCSI--CNRRFMRSDHLAKHVKR 345
           HTGEK + C    C++ F  +   AKH  R
Sbjct: 92  HTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121



 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 8/93 (8%)

Query: 265 ECNYENCGKNYFKSSHLKAHMRT---HTGERPFLCQWTGCGRR---FSRSDELSRHKRTH 318
           +C ++ C + +     L  H+ +   H   + F+C W GC R    F     L  H R H
Sbjct: 3   DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRH 62

Query: 319 TGEKKFGCSI--CNRRFMRSDHLAKHVKRHSKD 349
           TGEK   C+   C + + R ++L  H++ H+ +
Sbjct: 63  TGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE 95



 Score = 38.9 bits (89), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 264 FECNYENCGKNYFKSSHLKAHM-RTHTGERPFLCQWTGCGRRFSRSDELSRHKRT 317
           + C +E C K +  +S    H  RTH+ E+P++C+  GC +R++    L +H +T
Sbjct: 98  YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152


>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
          Length = 92

 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 2/82 (2%)

Query: 266 CNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           C++ +CG  Y K+  L+AH+  HTGE+PF C+  GC + F+    L+RH  THTGEK F 
Sbjct: 6   CSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFT 65

Query: 326 CSI--CNRRFMRSDHLAKHVKR 345
           C    C+ RF    ++ KH  R
Sbjct: 66  CDSDGCDLRFTTKANMKKHFNR 87



 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRH 314
           F C  E C K +    HL  H  THTGE+ F C   GC  RF+    + +H
Sbjct: 34  FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH 84



 Score = 38.1 bits (87), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGC--SICNRRFMRSDHLAKHVKRHSKD 349
           + ++C +  CG  ++++ +L  H   HTGEK F C    C + F    HL +H   H+ +
Sbjct: 2   KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61

Query: 350 GAITPSNIGTPSNVLRNANV 369
              T  + G        AN+
Sbjct: 62  KNFTCDSDGCDLRFTTKANM 81


>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
 pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
           Bound To The 5s Ribosomal Rna Gene Internal Control
           Region
          Length = 190

 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 2/84 (2%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
           + C++ +CG  Y K+  L+AH+  HTGE+PF C+  GC + F+    L+RH  THTGEK 
Sbjct: 13  YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72

Query: 324 FGCSI--CNRRFMRSDHLAKHVKR 345
           F C    C+ RF    ++ KH  R
Sbjct: 73  FTCDSDGCDLRFTTKANMKKHFNR 96



 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 36/58 (62%)

Query: 263 IFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
           ++ C++ENCGK + K + LK H  +HT + P+ C   GC +RFS    L RH++ H G
Sbjct: 104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161



 Score = 38.1 bits (87), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 294 FLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGC--SICNRRFMRSDHLAKHVKRHSKDGA 351
           ++C +  CG  ++++ +L  H   HTGEK F C    C + F    HL +H   H+ +  
Sbjct: 13  YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72

Query: 352 ITPSNIGTPSNVLRNANV 369
            T  + G        AN+
Sbjct: 73  FTCDSDGCDLRFTTKANM 90


>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
           Zinc Finger Protein 278
          Length = 95

 Score = 65.9 bits (159), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 269 ENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE--KKFGC 326
           E CGK +    HL  H  +H+GE+P+ C    CG RF R D +S H R+H G   K + C
Sbjct: 11  EICGKIFRDVYHLNRHKLSHSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDGSVGKPYIC 68

Query: 327 SICNRRFMRSDHLAKHVKR 345
             C + F R DHL  H+K+
Sbjct: 69  QSCGKGFSRPDHLNGHIKQ 87



 Score = 52.0 bits (123), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 301 CGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKDGAI 352
           CG+ F     L+RHK +H+GEK + C +C  RF R D ++ HV+ H  DG++
Sbjct: 13  CGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH--DGSV 62


>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
          Length = 82

 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
           F+C    CGK++ +SS L  H+  H+  RP+ CQ+  CG+RF +  ++ +H   HTGEK 
Sbjct: 2   FDCKI--CGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKP 57

Query: 324 FGCSICNRRFMRSDHLAKHVKRHS 347
             C +C + F +S +L  H ++H+
Sbjct: 58  HKCQVCGKAFSQSSNLITHSRKHT 81



 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
           R + C Y  CGK + + S +K H   HTGE+P  CQ   CG+ FS+S  L  H R HTG
Sbjct: 28  RPYPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQV--CGKAFSQSSNLITHSRKHTG 82


>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
 pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
          Length = 88

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 34/51 (66%), Gaps = 2/51 (3%)

Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKH 342
           +PF C+   C R FSRSD L+ H RTHTGEK F C IC R+F RSD   +H
Sbjct: 2   KPFQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50



 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 4/52 (7%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHK 315
           F+C    C +N+ +S HL  H+RTHTGE+PF C    CGR+F+RSDE  RH+
Sbjct: 4   FQCRI--CMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFARSDERKRHR 51



 Score = 33.9 bits (76), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 322 KKFGCSICNRRFMRSDHLAKHVKRHS 347
           K F C IC R F RSDHL  H++ H+
Sbjct: 2   KPFQCRICMRNFSRSDHLTTHIRTHT 27


>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
           Factor Sp1f2, Minimized Average Structure
 pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
           Domain (Zinc Finger 2)
          Length = 31

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/31 (77%), Positives = 28/31 (90%)

Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           RPF+C W+ CG+RF+RSDEL RHKRTHTGEK
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31



 Score = 36.6 bits (83), Expect = 0.021,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGER 292
           R F C +  CGK + +S  L+ H RTHTGE+
Sbjct: 1   RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31


>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
           Free Structure With Those In Nucleic-Acid Complexes
          Length = 85

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 263 IFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTG-- 320
           ++ C++ENCGK + K + LK H  +HT + P+ C   GC +RFS    L RH++ H G  
Sbjct: 1   MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60

Query: 321 -EKKFGCSICNR 331
            +K   CS   +
Sbjct: 61  CKKDDSCSFVGK 72



 Score = 38.1 bits (87), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 294 FLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGC--SICNRRFMRSDHLAKHVKRHS 347
           ++C +  CG+ F + ++L  H+ +HT +  + C    C++RF     L +H K H+
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57


>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
           Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
           Reveals Two Modes Of Molecular Recognition
 pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
           Reveals Two Modes Of Molecular Recognition
 pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
           Rrna 55mer (Nmr Structure)
          Length = 87

 Score = 59.3 bits (142), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 3/72 (4%)

Query: 263 IFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTG-- 320
           ++ C++ENCGK + K + LK H  +HT + P+ C   GC +RFS    L RH++ H G  
Sbjct: 1   MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60

Query: 321 -EKKFGCSICNR 331
            +K   CS   +
Sbjct: 61  CKKDDSCSFVGK 72



 Score = 38.1 bits (87), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 294 FLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGC--SICNRRFMRSDHLAKHVKRHS 347
           ++C +  CG+ F + ++L  H+ +HT +  + C    C++RF     L +H K H+
Sbjct: 2   YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57


>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
           Protein Odd-Skipped-Related 2 Splicing Isoform 2
          Length = 106

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 4/93 (4%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
           F C +  CG+++ KS +L  H RTHT ERP+ C    C + F R D L  H+  H+ EK 
Sbjct: 18  FICKF--CGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSKEKP 73

Query: 324 FGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           F C  C + F +S  LA H   H +  + T ++
Sbjct: 74  FKCQECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106



 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKDG 350
           ++ F+C++  CGR F++S  L  H+RTHT E+ + C IC++ F R DHL  H   HSK+ 
Sbjct: 15  KKEFICKF--CGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEK 72

Query: 351 AITPSNIG 358
                  G
Sbjct: 73  PFKCQECG 80


>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
           Domain From Human Krueppel-Like Factor 15
          Length = 48

 Score = 58.2 bits (139), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/37 (67%), Positives = 29/37 (78%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+PF C W GCG RFSRSDELSRH+R+H+G K  G S
Sbjct: 10  EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46



 Score = 30.8 bits (68), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           F C +  CG  + +S  L  H R+H+G +P
Sbjct: 13  FACTWPGCGWRFSRSDELSRHRRSHSGVKP 42


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
           Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           +++ C    CGK++   S    HM  H G RP+ C    CG++F     L  H + HTG 
Sbjct: 9   KLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIHTGI 63

Query: 322 KKFGCSICNRRFMRSDHLAKHV 343
           K + C+IC +RFM  D   +HV
Sbjct: 64  KPYECNICAKRFMWRDSFHRHV 85



 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
           +G++ + CQ   CG+ F+   +  RH   H G + +GC +C ++F    HL  H+K H+
Sbjct: 6   SGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61


>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
           Of Zinc Finger Protein 435
          Length = 77

 Score = 56.2 bits (134), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 33/50 (66%)

Query: 301 CGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKDG 350
           CG+ FS S +LS+H+RTHTGEK + C  C + F++  HL  H + H+  G
Sbjct: 24  CGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73



 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query: 261 RRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
           RR ++C  + CGK++  SS L  H RTHTGE+P+ C    CG+ F +   L  H R HTG
Sbjct: 16  RRRYKC--DECGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVHTG 71



 Score = 30.8 bits (68), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 269 ENCGKNYFKSSHLKAHMRTHTGERP 293
           + CGK + + SHL  H R HTG  P
Sbjct: 50  DECGKAFIQRSHLIGHHRVHTGSGP 74


>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
           Zinc-Binding Domain Of The Zinc Finger Protein 64,
           Isoforms 1 And 2
          Length = 96

 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 269 ENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSI 328
           E CGK + +   LK HMR HTG +P+ C+   C    + S  L++H R H+ E+ F C I
Sbjct: 12  EVCGKCFSRKDKLKTHMRCHTGVKPYKCKT--CDYAAADSSSLNKHLRIHSDERPFKCQI 69

Query: 329 CNRRFMRSDHLAKHVKRHSKD 349
           C      S  L  H++ H+ D
Sbjct: 70  CPYASRNSSQLTVHLRSHTGD 90


>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
           Nmr, 25 Structures
          Length = 60

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 294 FLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKR 345
           F+C+   C R F+R + L RH R+HT EK + C +CNR F R D L +H ++
Sbjct: 3   FVCEV--CTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52



 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 269 ENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRH-KRTHTG 320
           E C + + +  HLK H R+HT E+P+ C    C R F+R D L RH ++ H+G
Sbjct: 6   EVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFTRRDLLIRHAQKIHSG 56



 Score = 31.6 bits (70), Expect = 0.85,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 324 FGCSICNRRFMRSDHLAKHVKRHSKD 349
           F C +C R F R +HL +H + H+ +
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNE 28


>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
           Human Zinc Finger Protein 24
          Length = 72

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
           E+P+ C    CG+ FSRS  L +H+R HTGEK + C  C + F ++  L  H + H+
Sbjct: 12  EKPYGC--VECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66



 Score = 48.5 bits (114), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 271 CGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHT 319
           CGK + +SS L  H R HTGE+P+ C    CG+ FS++  L  H+R HT
Sbjct: 20  CGKAFSRSSILVQHQRVHTGEKPYKC--LECGKAFSQNSGLINHQRIHT 66


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
           Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 44/107 (41%), Gaps = 30/107 (28%)

Query: 271 CGKNYFKSSHLKAHMRTHTGERPFLCQWTG-----------------------------C 301
           C K +    +LK H R HTGE+PF C   G                             C
Sbjct: 13  CHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVC 72

Query: 302 GRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKH-VKRHS 347
              F R  EL  H  +HTGE  + CS C+++FM+   L  H +K HS
Sbjct: 73  QETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119


>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
           Domain In Complex With Kaiso Binding Site Dna
 pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
           In Complex With Kaiso Binding Site Dna
 pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
           In Complex With Methylated Cpg Site Dna
          Length = 133

 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 46/80 (57%), Gaps = 3/80 (3%)

Query: 271 CGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICN 330
           C ++Y   + L+ H   H+ E+ + C++  C + F  ++  ++H+  HTGE+++ C  C 
Sbjct: 28  CKRSYVCLTSLRRHFNIHSWEKKYPCRY--CEKVFPLAEYRTKHEIHHTGERRYQCLACG 85

Query: 331 RRFMRSDHLAKHVKR-HSKD 349
           + F+    ++ H+K  HS+D
Sbjct: 86  KSFINYQFMSSHIKSVHSQD 105


>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
           Domain (Zinc Finger 1)
          Length = 37

 Score = 44.7 bits (104), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 1/36 (2%)

Query: 258 DP-RRRIFECNYENCGKNYFKSSHLKAHMRTHTGER 292
           DP +++   C+ + CGK Y K+SHL+AH+R HTGER
Sbjct: 2   DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37



 Score = 32.3 bits (72), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           ++  +C   GCG+ + ++  L  H R HTGE+
Sbjct: 6   KKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37


>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           725- 757) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 42.0 bits (97), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P++C +  CG+ F  S EL RH+R HTGEK  G S
Sbjct: 10  EKPYVCDY--CGKAFGLSAELVRHQRIHTGEKPSGPS 44



 Score = 32.0 bits (71), Expect = 0.61,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           + C+Y  CGK +  S+ L  H R HTGE+P
Sbjct: 13  YVCDY--CGKAFGLSAELVRHQRIHTGEKP 40


>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
           Bklf
          Length = 35

 Score = 42.0 bits (97), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 20/30 (66%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTH 318
           TG +PF C W  C R FSRSD L+ H++ H
Sbjct: 3   TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32



 Score = 35.8 bits (81), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 319 TGEKKFGCSI--CNRRFMRSDHLAKHVKRH 346
           TG K F C+   C+R F RSDHLA H KRH
Sbjct: 3   TGIKPFQCTWPDCDRSFSRSDHLALHRKRH 32



 Score = 27.7 bits (60), Expect = 9.9,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTH 288
           F+C + +C +++ +S HL  H + H
Sbjct: 8   FQCTWPDCDRSFSRSDHLALHRKRH 32


>pdb|1BHI|A Chain A, Structure Of Transactivation Domain Of Cre-Bp1ATF-2, Nmr,
           20 Structures
          Length = 38

 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           ++PFLC   GCG+RF+  D L+ HK  H    KFG
Sbjct: 4   DKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG 38


>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
           Northeast Structural Genomics Consortium
          Length = 74

 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 269 ENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           + C  ++    +L +H   HTGE+P+ C    CG +F+R   L  H R H+GEK
Sbjct: 21  DRCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEK 72



 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKD 349
           ++P+ C    C   F     L+ HK  HTGEK + C+IC  +F R  +L  H + HS +
Sbjct: 15  DKPYKCDR--CQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71



 Score = 28.9 bits (63), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           + CN   CG  + + ++LK H R H+GE+P
Sbjct: 46  YRCNI--CGAQFNRPANLKTHTRIHSGEKP 73


>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
 pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
           Form
 pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
 pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
          Length = 57

 Score = 40.8 bits (94), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 265 ECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWT--GCGRRFSRSDELSRHKR 316
           EC+Y  CGK +  + +L  H+RTHTGE+P+ C++      ++ S    L RH +
Sbjct: 6   ECSY--CGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57



 Score = 40.8 bits (94), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 26/48 (54%)

Query: 301 CGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSK 348
           CG+ F  +  L+ H RTHTGEK + C  C     +   L  H++RH K
Sbjct: 10  CGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHHK 57


>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
           Domain (Zinc Finger 3)
 pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
           Factor Sp1f3, Minimized Average Structure
          Length = 29

 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 17/25 (68%), Positives = 20/25 (80%)

Query: 322 KKFGCSICNRRFMRSDHLAKHVKRH 346
           KKF C  C +RFMRSDHL+KH+K H
Sbjct: 1   KKFACPECPKRFMRSDHLSKHIKTH 25



 Score = 28.9 bits (63), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 301 CGRRFSRSDELSRHKRTHTGEK 322
           C +RF RSD LS+H +TH  +K
Sbjct: 8   CPKRFMRSDHLSKHIKTHQNKK 29


>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
          Length = 60

 Score = 40.8 bits (94), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
           ERPF C +  CG+ +  +  LSRH+R H G +   C  C + F     + +H+K H
Sbjct: 2   ERPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55



 Score = 39.7 bits (91), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTH 318
           R F CN+  CGK Y  +S L  H R H G RP  C    CG+ F    E++RH + H
Sbjct: 3   RPFFCNF--CGKTYRDASGLSRHRRAHLGYRPRSC--PECGKCFRDQSEVNRHLKVH 55


>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
          Length = 37

 Score = 40.0 bits (92), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/31 (61%), Positives = 20/31 (64%)

Query: 316 RTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
           R  TG K F C  C+R F RSDHLA H KRH
Sbjct: 4   RGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34



 Score = 33.5 bits (75), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 286 RTHTGERPFLCQWTGCGRRFSRSDELSRHKRTH 318
           R  TG +PF C    C R FSRSD L+ H++ H
Sbjct: 4   RGSTGIKPFQC--PDCDRSFSRSDHLALHRKRH 34


>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
           Zinc Finger Protein 473
          Length = 42

 Score = 39.7 bits (91), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/33 (51%), Positives = 25/33 (75%), Gaps = 2/33 (6%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           +GE+P++CQ   CG+ F++S  LS H+R HTGE
Sbjct: 6   SGEKPYVCQ--ECGKAFTQSSCLSIHRRVHTGE 36



 Score = 28.9 bits (63), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 269 ENCGKNYFKSSHLKAHMRTHTGE 291
           + CGK + +SS L  H R HTGE
Sbjct: 14  QECGKAFTQSSCLSIHRRVHTGE 36


>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
           Suppressor Protein (Wt1) Finger 3
          Length = 29

 Score = 39.3 bits (90), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 2/31 (6%)

Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           +PF C+   C R+FSRSD L  H RTHTGEK
Sbjct: 1   KPFQCK--TCQRKFSRSDHLKTHTRTHTGEK 29



 Score = 33.1 bits (74), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 2/29 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGER 292
           F+C  + C + + +S HLK H RTHTGE+
Sbjct: 3   FQC--KTCQRKFSRSDHLKTHTRTHTGEK 29



 Score = 32.7 bits (73), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 16/26 (61%)

Query: 322 KKFGCSICNRRFMRSDHLAKHVKRHS 347
           K F C  C R+F RSDHL  H + H+
Sbjct: 1   KPFQCKTCQRKFSRSDHLKTHTRTHT 26


>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
           Domains Of Zinc Finger Protein 692
          Length = 79

 Score = 38.9 bits (89), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKR-THTGEKKFGC--SICNRRFMRSDHLAKHVKR 345
           +G     C + GCGR FS    L+ HK+  H  +K F C    C + F    HL +H+K 
Sbjct: 3   SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62

Query: 346 HS 347
           HS
Sbjct: 63  HS 64



 Score = 35.4 bits (80), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 260 RRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTG 300
            ++ F C    CGK++    HLK HM+ H+  R ++C+++G
Sbjct: 35  HQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSG 75



 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 266 CNYENCGKNYFKSSHLKAHMR-THTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKF 324
           C++  CG+ +    +L  H +  H  ++ F C    CG+ F+    L  H + H+  + +
Sbjct: 10  CDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDY 69

Query: 325 GCSI 328
            C  
Sbjct: 70  ICEF 73


>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           760- 792) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C    CG+ FS++ +L+RH+R HTGEK  G
Sbjct: 10  EKPYKCNE--CGKAFSQTSKLARHQRIHTGEKPSG 42



 Score = 32.7 bits (73), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++CN   CGK + ++S L  H R HTGE+P
Sbjct: 13  YKCN--ECGKAFSQTSKLARHQRIHTGEKP 40


>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           563- 595) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 38.5 bits (88), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+PF C+   CG+RF+++ +L  H+R HTGEK  G
Sbjct: 10  EKPFKCEE--CGKRFTQNSQLHSHQRVHTGEKPSG 42



 Score = 34.7 bits (78), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           F+C  E CGK + ++S L +H R HTGE+P
Sbjct: 13  FKC--EECGKRFTQNSQLHSHQRVHTGEKP 40


>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           479- 511) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 38.1 bits (87), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 22/30 (73%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           F+C  E CGK + ++SHL +H R HTGE+P
Sbjct: 13  FQC--EECGKRFTQNSHLHSHQRVHTGEKP 40



 Score = 38.1 bits (87), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+PF C+   CG+RF+++  L  H+R HTGEK  G
Sbjct: 10  EKPFQCEE--CGKRFTQNSHLHSHQRVHTGEKPSG 42



 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           EK F C  C +RF ++ HL  H + H+ +    PS+
Sbjct: 10  EKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS 45


>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
          Length = 33

 Score = 38.1 bits (87), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query: 323 KFGCSICNRRFMRSDHLAKHVKRH 346
           KF C  C +RFMRSDHL+KH+  H
Sbjct: 2   KFACPECPKRFMRSDHLSKHITLH 25


>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           612- 644) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 37.7 bits (86), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+PF C    CG+ FS S +L+ H+R HTGEK  G
Sbjct: 10  EKPFECAE--CGKSFSISSQLATHQRIHTGEKPSG 42



 Score = 35.0 bits (79), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           FEC    CGK++  SS L  H R HTGE+P
Sbjct: 13  FECA--ECGKSFSISSQLATHQRIHTGEKP 40


>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 37.4 bits (85), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 2/34 (5%)

Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           +P+ C    CG+ FS++ +L+RH+R HTGEK  G
Sbjct: 11  KPYQCNE--CGKAFSQTSKLARHQRVHTGEKPSG 42



 Score = 33.5 bits (75), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++CN   CGK + ++S L  H R HTGE+P
Sbjct: 13  YQCN--ECGKAFSQTSKLARHQRVHTGEKP 40


>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           887- 919) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 37.4 bits (85), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C    CG+ FS+   LS H+RTHTGEK  G
Sbjct: 10  EKPYGCNE--CGKTFSQKSILSAHQRTHTGEKPSG 42



 Score = 35.4 bits (80), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           + CN   CGK + + S L AH RTHTGE+P
Sbjct: 13  YGCN--ECGKTFSQKSILSAHQRTHTGEKP 40


>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
           Zinc Finger Protein 268
          Length = 42

 Score = 37.0 bits (84), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           +GE P+ C  + CG+ F+R D+L  H+RTH GE
Sbjct: 6   SGENPYEC--SECGKAFNRKDQLISHQRTHAGE 36



 Score = 28.1 bits (61), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 319 TGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
           +GE  + CS C + F R D L  H + H+
Sbjct: 6   SGENPYECSECGKAFNRKDQLISHQRTHA 34


>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
          Length = 33

 Score = 37.0 bits (84), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 18/28 (64%)

Query: 319 TGEKKFGCSICNRRFMRSDHLAKHVKRH 346
           TG K F C  C+  F RSDHLA H KRH
Sbjct: 3   TGIKPFQCPDCDWSFSRSDHLALHRKRH 30



 Score = 30.0 bits (66), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTH 318
           TG +PF C    C   FSRSD L+ H++ H
Sbjct: 3   TGIKPFQC--PDCDWSFSRSDHLALHRKRH 30


>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           581- 609) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 36.6 bits (83), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           +GE+P+ C  T CG+ F    +L  H+RTHTGE
Sbjct: 6   SGEKPYEC--TDCGKAFGLKSQLIIHQRTHTGE 36



 Score = 30.0 bits (66), Expect = 2.4,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGE 291
           +EC   +CGK +   S L  H RTHTGE
Sbjct: 11  YECT--DCGKAFGLKSQLIIHQRTHTGE 36


>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
           Human Transcriptional Repressor Ctcf
          Length = 86

 Score = 36.6 bits (83), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 286 RTHTGERPFLCQWTGCGRRFSRSDELSRH-KRTHTGE---KKFGCSICNRRFMRSDHLAK 341
           RTHTGE+P+ C    C + F +   L  H KR H        F CS C + F R + +A+
Sbjct: 8   RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMAR 65

Query: 342 HVKRHSKDGAITPSNIGTPSN 362
           H    +    +   N G  S 
Sbjct: 66  HADNCAGPDGVEGENSGPSSG 86


>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           715- 747) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 36.6 bits (83), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P++C    CG+ F +   L+RH+R HTGEK  G
Sbjct: 10  EKPYICNE--CGKSFIQKSHLNRHRRIHTGEKPSG 42



 Score = 34.7 bits (78), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           + CN   CGK++ + SHL  H R HTGE+P
Sbjct: 13  YICN--ECGKSFIQKSHLNRHRRIHTGEKP 40


>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           544- 576) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 36.6 bits (83), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           R  +CN   CGK++ +S+HL  H R HTGE+P
Sbjct: 11  RPHKCN--ECGKSFIQSAHLIQHQRIHTGEKP 40



 Score = 33.1 bits (74), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           ERP  C    CG+ F +S  L +H+R HTGEK  G
Sbjct: 10  ERPHKCNE--CGKSFIQSAHLIQHQRIHTGEKPSG 42


>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           199- 231) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 36.2 bits (82), Expect = 0.028,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 18/23 (78%)

Query: 271 CGKNYFKSSHLKAHMRTHTGERP 293
           CGK + +SSHL+ H R HTGE+P
Sbjct: 18  CGKEFSQSSHLQTHQRVHTGEKP 40



 Score = 33.5 bits (75), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 301 CGRRFSRSDELSRHKRTHTGEKKFGCS 327
           CG+ FS+S  L  H+R HTGEK  G S
Sbjct: 18  CGKEFSQSSHLQTHQRVHTGEKPSGPS 44



 Score = 29.6 bits (65), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           EK + C +C + F +S HL  H + H+ +    PS+
Sbjct: 10  EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS 45


>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           425- 457) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 36.2 bits (82), Expect = 0.033,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 24/36 (66%)

Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           E+ +GC+ C + F R  HL +H+KRH ++ +  PS+
Sbjct: 10  ERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45



 Score = 28.1 bits (61), Expect = 9.0,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGER 292
           R + CN   CGKN+ + SHL  H++ H  E+
Sbjct: 11  RPYGCN--ECGKNFGRHSHLIEHLKRHFREK 39


>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           491- 523) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 35.8 bits (81), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           ERP++C  T CG+ F+    L +H++ HTGEK  G
Sbjct: 10  ERPYIC--TVCGKAFTDRSNLIKHQKIHTGEKPSG 42


>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
           Zinc Finger From The Human Enhancer Binding Protein
           Mbp-1
          Length = 57

 Score = 35.8 bits (81), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 269 ENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
           E CG    K S LK H+RTHT  RP+ C +  C   F     L++H ++    KK
Sbjct: 5   EECGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFKTKGNLTKHMKSKAHSKK 57



 Score = 35.0 bits (79), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 294 FLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVK 344
           ++C+   CG R  +   L +H RTHT  + + C+ CN  F    +L KH+K
Sbjct: 2   YICE--ECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50


>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 484
          Length = 42

 Score = 35.8 bits (81), Expect = 0.043,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           +GE+P++C  T CG+ F R      H+R HTGE
Sbjct: 6   SGEKPYVC--TECGKAFIRKSHFITHERIHTGE 36



 Score = 29.6 bits (65), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 271 CGKNYFKSSHLKAHMRTHTGE 291
           CGK + + SH   H R HTGE
Sbjct: 16  CGKAFIRKSHFITHERIHTGE 36



 Score = 28.9 bits (63), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 319 TGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
           +GEK + C+ C + F+R  H   H + H+
Sbjct: 6   SGEKPYVCTECGKAFIRKSHFITHERIHT 34


>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
           Finger Protein 278
          Length = 45

 Score = 35.4 bits (80), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 319 TGEKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPS 355
           +GEK + C +C  RF R D ++ HV+ H  DG++  S
Sbjct: 6   SGEKPYSCPVCGLRFKRKDRMSYHVRSH--DGSVGKS 40



 Score = 33.9 bits (76), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
           +GE+P+ C    CG RF R D +S H R+H G
Sbjct: 6   SGEKPYSCPV--CGLRFKRKDRMSYHVRSHDG 35


>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           415- 447) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 35.4 bits (80), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 261 RRIFECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           +++F+CN   C K + +SS L  H R HTGE+P
Sbjct: 10  KKLFKCN--ECKKTFTQSSSLTVHQRIHTGEKP 40



 Score = 28.9 bits (63), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 301 CGRRFSRSDELSRHKRTHTGEKKFG 325
           C + F++S  L+ H+R HTGEK  G
Sbjct: 18  CKKTFTQSSSLTVHQRIHTGEKPSG 42


>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
           (699- 729) From Zinc Finger Protein 473
          Length = 44

 Score = 35.4 bits (80), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           +G++P +C    CG+ F +S  LS+H+R H+GEK  G
Sbjct: 6   SGKKPLVCNE--CGKTFRQSSCLSKHQRIHSGEKPSG 40



 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 255 ATNDPRRRIFECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++    ++   CN   CGK + +SS L  H R H+GE+P
Sbjct: 2   SSGSSGKKPLVCN--ECGKTFRQSSCLSKHQRIHSGEKP 38


>pdb|2KFQ|A Chain A, Nmr Structure Of Fp1
          Length = 32

 Score = 35.4 bits (80), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 16/21 (76%)

Query: 324 FGCSICNRRFMRSDHLAKHVK 344
           F C  C +RFMRSD L+KH+K
Sbjct: 3   FACPACPKRFMRSDALSKHIK 23


>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           435- 467) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 35.4 bits (80), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           +EC+  +CGK++ K S L  H R HTGE P
Sbjct: 13  YECS--DCGKSFIKKSQLHVHQRIHTGENP 40



 Score = 31.6 bits (70), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C  + CG+ F +  +L  H+R HTGE   G
Sbjct: 10  EKPYEC--SDCGKSFIKKSQLHVHQRIHTGENPSG 42


>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
           Finger Protein 278
          Length = 54

 Score = 35.4 bits (80), Expect = 0.056,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)

Query: 292 RPFLCQWTGCGRRFSRSDELSRH-KRTHTGEKKFGCSI 328
           +P++CQ   CG+ FSR D L+ H K+ HT E+   C +
Sbjct: 11  KPYICQ--SCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46



 Score = 33.1 bits (74), Expect = 0.30,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 269 ENCGKNYFKSSHLKAHMR-THTGERPFLCQ 297
           ++CGK + +  HL  H++  HT ERP  CQ
Sbjct: 16  QSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45


>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           668- 700) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 35.4 bits (80), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ C+   CG+ FS++  L +H+R HTGEK  G S
Sbjct: 10  EKPYECK--ECGKAFSQTTHLIQHQRVHTGEKPSGPS 44



 Score = 33.9 bits (76), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           +EC  + CGK + +++HL  H R HTGE+P
Sbjct: 13  YEC--KECGKAFSQTTHLIQHQRVHTGEKP 40


>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           301- 331) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 35.0 bits (79), Expect = 0.064,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           +GE+P+ C    CG+ FS    L  H+R HTGEK  G S
Sbjct: 6   SGEKPYGCN--ECGKDFSSKSYLIVHQRIHTGEKLSGPS 42



 Score = 30.4 bits (67), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGER 292
           + CN   CGK++   S+L  H R HTGE+
Sbjct: 11  YGCN--ECGKDFSSKSYLIVHQRIHTGEK 37



 Score = 29.3 bits (64), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 319 TGEKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           +GEK +GC+ C + F    +L  H + H+ +    PS+
Sbjct: 6   SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEKLSGPSS 43


>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
           592- 624) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 34.7 bits (78), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C    CG+ F  +  LSRH+R HTGEK  G
Sbjct: 10  EKPYKCNE--CGKVFRHNSYLSRHQRIHTGEKPSG 42



 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++CN   CGK +  +S+L  H R HTGE+P
Sbjct: 13  YKCN--ECGKVFRHNSYLSRHQRIHTGEKP 40


>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           693- 723) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 34.7 bits (78), Expect = 0.081,   Method: Composition-based stats.
 Identities = 14/23 (60%), Positives = 17/23 (73%)

Query: 271 CGKNYFKSSHLKAHMRTHTGERP 293
           CGK +   S+L  HMRTHTGE+P
Sbjct: 16  CGKAFRSKSYLIIHMRTHTGEKP 38



 Score = 32.0 bits (71), Expect = 0.53,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           +G +P+ C  + CG+ F     L  H RTHTGEK  G S
Sbjct: 6   SGVKPYGC--SECGKAFRSKSYLIIHMRTHTGEKPSGPS 42



 Score = 29.3 bits (64), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 319 TGEKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           +G K +GCS C + F    +L  H++ H+ +    PS+
Sbjct: 6   SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKPSGPSS 43


>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           396- 428) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 34.7 bits (78), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++CN   CGK + ++SHL  H R HTGE+P
Sbjct: 13  YKCN--ECGKVFTQNSHLTNHWRIHTGEKP 40



 Score = 33.1 bits (74), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C    CG+ F+++  L+ H R HTGEK  G
Sbjct: 10  EKPYKCN--ECGKVFTQNSHLTNHWRIHTGEKPSG 42


>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           551- 583) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 34.7 bits (78), Expect = 0.099,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E P+ C    CG+ FSR  +L  H+RTH GEK  G S
Sbjct: 10  ENPYECH--ECGKAFSRKYQLISHQRTHAGEKPSGPS 44



 Score = 30.4 bits (67), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           +EC+   CGK + +   L +H RTH GE+P
Sbjct: 13  YECH--ECGKAFSRKYQLISHQRTHAGEKP 40


>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           312- 344) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 34.7 bits (78), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 20/25 (80%)

Query: 301 CGRRFSRSDELSRHKRTHTGEKKFG 325
           CG+ FSR+ +LS+H++ HTGEK  G
Sbjct: 18  CGKVFSRNSQLSQHQKIHTGEKPSG 42



 Score = 31.2 bits (69), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++CN   CGK + ++S L  H + HTGE+P
Sbjct: 13  YKCN--ECGKVFSRNSQLSQHQKIHTGEKP 40



 Score = 28.5 bits (62), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           EK++ C+ C + F R+  L++H K H+ +    PS+
Sbjct: 10  EKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45


>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           369- 401) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 34.3 bits (77), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           F+C    CGK+Y +  HL  H R HTGE+P
Sbjct: 13  FKCG--ECGKSYNQRVHLTQHQRVHTGEKP 40



 Score = 32.7 bits (73), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+PF C    CG+ +++   L++H+R HTGEK  G
Sbjct: 10  EKPFKCGE--CGKSYNQRVHLTQHQRVHTGEKPSG 42


>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           255- 287) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 34.3 bits (77), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 17/27 (62%)

Query: 267 NYENCGKNYFKSSHLKAHMRTHTGERP 293
           N E CGK +   S L+ H R HTGE+P
Sbjct: 14  NCEECGKAFIHDSQLQEHQRIHTGEKP 40



 Score = 33.1 bits (74), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ C+   CG+ F    +L  H+R HTGEK  G S
Sbjct: 10  EKPYNCE--ECGKAFIHDSQLQEHQRIHTGEKPSGPS 44


>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
          Length = 29

 Score = 34.3 bits (77), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 323 KFGCSICNRRFMRSDHLAKHVKRH 346
           KF C  C +RFMRSDHL  H+  H
Sbjct: 2   KFACPECPKRFMRSDHLTLHILLH 25


>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 347
          Length = 46

 Score = 34.3 bits (77), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C    CG+ F R+  L+RH+  HTGEK  G
Sbjct: 10  EKPYKCHE--CGKVFRRNSHLARHQLIHTGEKPSG 42



 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++C+   CGK + ++SHL  H   HTGE+P
Sbjct: 13  YKCH--ECGKVFRRNSHLARHQLIHTGEKP 40



 Score = 28.1 bits (61), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           EK + C  C + F R+ HLA+H   H+ +    PS+
Sbjct: 10  EKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45


>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           648- 680) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 33.9 bits (76), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C    CG+ F+++  L+RH+R HTG K  G
Sbjct: 10  EKPYKCNE--CGKVFTQNSHLARHRRVHTGGKPSG 42



 Score = 32.0 bits (71), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++CN   CGK + ++SHL  H R HTG +P
Sbjct: 13  YKCN--ECGKVFTQNSHLARHRRVHTGGKP 40



 Score = 28.1 bits (61), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           EK + C+ C + F ++ HLA+H + H+      PS+
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPSS 45


>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           584- 616) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 33.9 bits (76), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           F+C  + CGK + ++ HL +H+R HTGE+P
Sbjct: 13  FKC--KECGKAFRQNIHLASHLRIHTGEKP 40



 Score = 32.3 bits (72), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+PF C+   CG+ F ++  L+ H R HTGEK  G
Sbjct: 10  EKPFKCKE--CGKAFRQNIHLASHLRIHTGEKPSG 42



 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           EK F C  C + F ++ HLA H++ H+ +    PS+
Sbjct: 10  EKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45


>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           628- 660) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 33.9 bits (76), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           E+ F C+ C + F R  HLA H++ HS++ +  PS+
Sbjct: 10  ERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPSS 45



 Score = 32.0 bits (71), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGER 292
           R F+CN   CGK + + SHL  H+R H+ E+
Sbjct: 11  RPFKCN--ECGKGFGRRSHLAGHLRLHSREK 39



 Score = 31.6 bits (70), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           ERPF C    CG+ F R   L+ H R H+ EK  G S
Sbjct: 10  ERPFKCN--ECGKGFGRRSHLAGHLRLHSREKSSGPS 44


>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
           (781- 813) From Zinc Finger Protein 473
          Length = 46

 Score = 33.9 bits (76), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ C    CG+ F++   L++H+R HTGEK  G S
Sbjct: 10  EKPYRC--GECGKAFAQKANLTQHQRIHTGEKPSGPS 44



 Score = 29.6 bits (65), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 271 CGKNYFKSSHLKAHMRTHTGERP 293
           CGK + + ++L  H R HTGE+P
Sbjct: 18  CGKAFAQKANLTQHQRIHTGEKP 40


>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           564- 596) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 33.9 bits (76), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C    CG+ F+++  L+RH+  HTGEK  G
Sbjct: 10  EKPYKCNE--CGKVFTQNSHLARHRGIHTGEKPSG 42



 Score = 31.2 bits (69), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++CN   CGK + ++SHL  H   HTGE+P
Sbjct: 13  YKCN--ECGKVFTQNSHLARHRGIHTGEKP 40



 Score = 28.1 bits (61), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           EK + C+ C + F ++ HLA+H   H+ +    PS+
Sbjct: 10  EKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45


>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
           Transcriptional Repressor Ctcf Protein
          Length = 77

 Score = 33.9 bits (76), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 286 RTHTGERPFLCQWTGCGRRFSRSDELSRH-KRTHTGE-KKFGCSICNRRFMRSDHLAKHV 343
           RTH+GE+P+ C    C  RF++S  +  H  + HT    KF C  C+    R   L  H+
Sbjct: 8   RTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65

Query: 344 -KRHSKDG 350
            K+HS  G
Sbjct: 66  RKQHSYSG 73


>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
           Zinc Finger Protein 32
          Length = 41

 Score = 33.5 bits (75), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
           +GE+P+ C+   CG+ FS+   L+ H+R HTG
Sbjct: 6   SGEKPYQCK--ECGKSFSQRGSLAVHERLHTG 35


>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 33.5 bits (75), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+PF C    CG+ FS    L++H+R HTGEK  G
Sbjct: 10  EKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKPSG 42


>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           809- 841) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 33.5 bits (75), Expect = 0.21,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 24/36 (66%)

Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           EK + C++C + F+ S HL +H++ H+++    PS+
Sbjct: 10  EKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS 45



 Score = 30.0 bits (66), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGE 291
           + CN   CGK +  S+HL  H+R HT E
Sbjct: 13  YSCNV--CGKAFVLSAHLNQHLRVHTQE 38


>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           395- 427) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 33.5 bits (75), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           + F+C  E CGK ++ +S   +H R+H+GE+P
Sbjct: 11  KPFKC--EECGKGFYTNSQCYSHQRSHSGEKP 40



 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+PF C+   CG+ F  + +   H+R+H+GEK  G
Sbjct: 10  EKPFKCEE--CGKGFYTNSQCYSHQRSHSGEKPSG 42


>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           859- 889) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 33.1 bits (74), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           T E+P+ C  + CG+ F R+ +L  H+RTH+GE
Sbjct: 8   TREKPYEC--SECGKAFIRNSQLIVHQRTHSGE 38



 Score = 32.3 bits (72), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 260 RRRIFECNYENCGKNYFKSSHLKAHMRTHTGE 291
           R + +EC+   CGK + ++S L  H RTH+GE
Sbjct: 9   REKPYECS--ECGKAFIRNSQLIVHQRTHSGE 38



 Score = 28.1 bits (61), Expect = 9.2,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 319 TGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
           T EK + CS C + F+R+  L  H + HS
Sbjct: 8   TREKPYECSECGKAFIRNSQLIVHQRTHS 36


>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           423- 455) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 33.1 bits (74), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ C    CG+ + R  +L  H+R HTGEK  G S
Sbjct: 10  EKPYKC--VECGKGYKRRLDLDFHQRVHTGEKLSGPS 44


>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
           Zinc Finger Protein 224
          Length = 46

 Score = 33.1 bits (74), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+PF C    CG+ FSR   L+ H + HTGEK  G
Sbjct: 10  EKPFKC--VECGKGFSRRSALNVHHKLHTGEKPSG 42



 Score = 28.9 bits (63), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 271 CGKNYFKSSHLKAHMRTHTGERP 293
           CGK + + S L  H + HTGE+P
Sbjct: 18  CGKGFSRRSALNVHHKLHTGEKP 40


>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           775- 807) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 33.1 bits (74), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 17/23 (73%)

Query: 271 CGKNYFKSSHLKAHMRTHTGERP 293
           CGK +   S+L  HMRTH+GE+P
Sbjct: 18  CGKAFSSKSYLIIHMRTHSGEKP 40



 Score = 32.0 bits (71), Expect = 0.58,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ C  + CG+ FS    L  H RTH+GEK  G S
Sbjct: 10  EKPYGC--SECGKAFSSKSYLIIHMRTHSGEKPSGPS 44



 Score = 29.6 bits (65), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           EK +GCS C + F    +L  H++ HS +    PS+
Sbjct: 10  EKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45


>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           355- 385) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 33.1 bits (74), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           E P+ C    CG+ FSR D+L  H++TH+G+
Sbjct: 10  ENPYEC--CECGKVFSRKDQLVSHQKTHSGQ 38


>pdb|2AB3|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
           Rna Targeting Zinc Finger Proteins
          Length = 29

 Score = 33.1 bits (74), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 294 FLCQWTGCGRRFSRSDELSRHKRTHTG 320
           ++C +  CGR F+   +L+RHK+ HTG
Sbjct: 3   YVCHFENCGRSFNDRRKLNRHKKIHTG 29



 Score = 28.9 bits (63), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 263 IFECNYENCGKNYFKSSHLKAHMRTHTG 290
           ++ C++ENCG+++     L  H + HTG
Sbjct: 2   VYVCHFENCGRSFNDRRKLNRHKKIHTG 29


>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
           659- 691) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.7 bits (73), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ C  + CG+ F+R   L  H+++HTGE+  G S
Sbjct: 10  EKPYKC--SDCGKAFTRKSGLHIHQQSHTGERHSGPS 44



 Score = 28.1 bits (61), Expect = 8.3,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 270 NCGKNYFKSSHLKAHMRTHTGER 292
           +CGK + + S L  H ++HTGER
Sbjct: 17  DCGKAFTRKSGLHIHQQSHTGER 39


>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           385- 413) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 32.7 bits (73), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           +G++P++C    CG+ F    +L  H+R HTGE
Sbjct: 6   SGQKPYVCN--ECGKAFGLKSQLIIHERIHTGE 36


>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           641- 673) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 32.7 bits (73), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           T E PF C    CG+ FS S  LS+H+  H GE   G
Sbjct: 8   TKEHPFKCNE--CGKTFSHSAHLSKHQLIHAGENPSG 42



 Score = 31.6 bits (70), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 255 ATNDPRRRIFECNYENCGKNYFKSSHLKAHMRTHTGERP 293
            ++  +   F+CN   CGK +  S+HL  H   H GE P
Sbjct: 4   GSSGTKEHPFKCN--ECGKTFSHSAHLSKHQLIHAGENP 40


>pdb|1ZFD|A Chain A, Swi5 Zinc Finger Domain 2, Nmr, 45 Structures
          Length = 32

 Score = 32.7 bits (73), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTH 318
           +RP+ C   GC + F R+ +L RHK++H
Sbjct: 1   DRPYSCDHPGCDKAFVRNHDLIRHKKSH 28


>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           340- 372) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 32.7 bits (73), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C    CG+ F+++  L RH+  HTGEK  G
Sbjct: 10  EKPYKCNE--CGKVFTQNSHLVRHRGIHTGEKPSG 42



 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++CN   CGK + ++SHL  H   HTGE+P
Sbjct: 13  YKCN--ECGKVFTQNSHLVRHRGIHTGEKP 40


>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           273- 303) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 32.7 bits (73), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 319 TGEKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           +GEK FGCS C + F    +L  H + H+++    PS+
Sbjct: 6   SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43


>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           687- 719) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.7 bits (73), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           ER + C  + CG+ F+R   L  H+R HTGEK  G S
Sbjct: 10  ERHYEC--SECGKAFARKSTLIMHQRIHTGEKPSGPS 44



 Score = 32.0 bits (71), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           R +EC+   CGK + + S L  H R HTGE+P
Sbjct: 11  RHYECS--ECGKAFARKSTLIMHQRIHTGEKP 40


>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           536- 568) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 32.3 bits (72), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           +P++C    CG+ FS    L+ H+  HTGEK  G
Sbjct: 11  KPYMCNE--CGKAFSVYSSLTTHQVIHTGEKPSG 42


>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 32
          Length = 41

 Score = 32.0 bits (71), Expect = 0.54,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 261 RRIFECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           +R++EC  + CGK++ +   L  H R HTG  P
Sbjct: 8   QRVYEC--QECGKSFRQKGSLTLHERIHTGSGP 38



 Score = 30.8 bits (68), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
           +G+R + CQ   CG+ F +   L+ H+R HTG
Sbjct: 6   SGQRVYECQ--ECGKSFRQKGSLTLHERIHTG 35


>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
          Length = 30

 Score = 32.0 bits (71), Expect = 0.54,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           +P++C    C R+F+    L RH R HTGEK
Sbjct: 2   KPYVC--IHCQRQFADPGALQRHVRIHTGEK 30


>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           732- 764) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 32.0 bits (71), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           ++P+ C    CG+ F+++  L+RH+  HTGEK  G
Sbjct: 10  KKPYKCNE--CGKVFTQNSHLARHRGIHTGEKPSG 42



 Score = 31.6 bits (70), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)

Query: 261 RRIFECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++ ++CN   CGK + ++SHL  H   HTGE+P
Sbjct: 10  KKPYKCN--ECGKVFTQNSHLARHRGIHTGEKP 40


>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
           Zinc Finger Protein 224
          Length = 46

 Score = 32.0 bits (71), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ C+   CG+ ++R   L  H+R H GEK  G S
Sbjct: 10  EKPYKCE--DCGKGYNRRLNLDMHQRVHMGEKTSGPS 44



 Score = 28.5 bits (62), Expect = 7.2,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 269 ENCGKNYFKSSHLKAHMRTHTGER 292
           E+CGK Y +  +L  H R H GE+
Sbjct: 16  EDCGKGYNRRLNLDMHQRVHMGEK 39


>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           603- 635) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.0 bits (71), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ C  + CG+ F++  +L  H++ HTGEK  G S
Sbjct: 10  EKPYEC--SICGKSFTKKSQLHVHQQIHTGEKPSGPS 44



 Score = 32.0 bits (71), Expect = 0.64,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           +EC+   CGK++ K S L  H + HTGE+P
Sbjct: 13  YECSI--CGKSFTKKSQLHVHQQIHTGEKP 40


>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           508- 540) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 32.0 bits (71), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C    CG+ F+++  L+ H+R HTG K  G
Sbjct: 10  EKPYKCNE--CGKVFTQNSHLANHQRIHTGVKPSG 42



 Score = 31.6 bits (70), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++CN   CGK + ++SHL  H R HTG +P
Sbjct: 13  YKCN--ECGKVFTQNSHLANHQRIHTGVKP 40


>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           379- 411) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 32.0 bits (71), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 297 QWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           + T CG+ F+R   LS H++ HTGEK  G
Sbjct: 14  ECTECGKAFTRKSTLSMHQKIHTGEKPSG 42



 Score = 31.2 bits (69), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           FEC    CGK + + S L  H + HTGE+P
Sbjct: 13  FECT--ECGKAFTRKSTLSMHQKIHTGEKP 40


>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
          Length = 29

 Score = 31.6 bits (70), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 296 CQWTGCGRRFSRSDELSRHKRTHTGEK 322
           CQ   CG+ F+++  L  H R HTGEK
Sbjct: 3   CQCVMCGKAFTQASSLIAHVRQHTGEK 29



 Score = 30.8 bits (68), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 266 CNYENCGKNYFKSSHLKAHMRTHTGER 292
           C    CGK + ++S L AH+R HTGE+
Sbjct: 3   CQCVMCGKAFTQASSLIAHVRQHTGEK 29


>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           752- 784) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 31.6 bits (70), Expect = 0.71,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ C  + CG+ FS    LS H+R H+G+K  G S
Sbjct: 10  EKPYEC--SVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44


>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           640- 672) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 31.6 bits (70), Expect = 0.75,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ C+   C + F++   L++H++THTGEK  G S
Sbjct: 10  EKPYECKV--CSKAFTQKAHLAQHQKTHTGEKPSGPS 44



 Score = 31.6 bits (70), Expect = 0.84,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           EK + C +C++ F +  HLA+H K H+ +    PS+
Sbjct: 10  EKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS 45



 Score = 30.4 bits (67), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           +EC    C K + + +HL  H +THTGE+P
Sbjct: 13  YECKV--CSKAFTQKAHLAQHQKTHTGEKP 40


>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           598- 626) Of Human B-Cell Lymphoma 6 Protein
          Length = 42

 Score = 31.6 bits (70), Expect = 0.78,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++C  E CG  + + +HL+AH+  HTG  P
Sbjct: 12  YKC--ETCGARFVQVAHLRAHVLIHTGSGP 39



 Score = 30.0 bits (66), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRHSKDG 350
           EK + C  C  RF++  HL  HV  H+  G
Sbjct: 9   EKPYKCETCGARFVQVAHLRAHVLIHTGSG 38


>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
           Of Zinc Finger Protein 692
          Length = 78

 Score = 31.6 bits (70), Expect = 0.78,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 301 CGRRFSRSDELSRHKRTHT---GEKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSNI 357
           CG    +   L+ H+R H       +F C  C +RF + D +A H  +      + P   
Sbjct: 13  CGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQES 72

Query: 358 GTPSN 362
             PS+
Sbjct: 73  SGPSS 77


>pdb|1ZNM|A Chain A, A Zinc Finger With An Artificial Beta-Turn, Original
           Sequence Taken From The Third Zinc Finger Domain Of The
           Human Transcriptional Repressor Protein Yy1 (Ying And
           Yang 1, A Delta Transcription Factor), Nmr, 34
           Structures
          Length = 28

 Score = 31.6 bits (70), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 293 PFLCQWTGCGRRFSRSDELSRHKRTHTG 320
           PF C +  CG+RFS    L  H + HTG
Sbjct: 1   PFQCTFXCCGKRFSLDFNLKTHVKIHTG 28



 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTG 290
           F+C +  CGK +    +LK H++ HTG
Sbjct: 2   FQCTFXCCGKRFSLDFNLKTHVKIHTG 28


>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           768- 800) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 31.2 bits (69), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 271 CGKNYFKSSHLKAHMRTHTGERP 293
           CG+ +   SHL  H R HTGE+P
Sbjct: 18  CGRGFTLKSHLNQHQRIHTGEKP 40



 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 301 CGRRFSRSDELSRHKRTHTGEKKFG 325
           CGR F+    L++H+R HTGEK  G
Sbjct: 18  CGRGFTLKSHLNQHQRIHTGEKPSG 42


>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           463- 495) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E PF+C  + CG+ F+    L  H++ HTGE+  G
Sbjct: 10  ENPFIC--SECGKVFTHKTNLIIHQKIHTGERPSG 42



 Score = 28.1 bits (61), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 271 CGKNYFKSSHLKAHMRTHTGERP 293
           CGK +   ++L  H + HTGERP
Sbjct: 18  CGKVFTHKTNLIIHQKIHTGERP 40


>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           607- 639) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+PF C  + C + F+    L  H+RTHTGEK  G
Sbjct: 10  EKPFEC--SECQKAFNTKSNLIVHQRTHTGEKPSG 42



 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           FEC+   C K +   S+L  H RTHTGE+P
Sbjct: 13  FECS--ECQKAFNTKSNLIVHQRTHTGEKP 40


>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 32
          Length = 45

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           ++PF C  T CG+ F     L  H+R HTGEK
Sbjct: 10  QKPFEC--THCGKSFRAKGNLVTHQRIHTGEK 39



 Score = 29.3 bits (64), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGER 292
           FEC +  CGK++    +L  H R HTGE+
Sbjct: 13  FECTH--CGKSFRAKGNLVTHQRIHTGEK 39


>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           441- 469) Of Human Zinc Finger Protein 268
          Length = 42

 Score = 31.2 bits (69), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
           +GE+P++C  + CG+ F+   +L  H+  HTG
Sbjct: 6   SGEKPYVC--SDCGKAFTFKSQLIVHQGIHTG 35


>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           547- 579) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 31.2 bits (69), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           R +EC+   CGK + + S L  H R H GE+P
Sbjct: 11  RHYECS--ECGKAFIQKSTLSMHQRIHRGEKP 40



 Score = 29.6 bits (65), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           ER + C  + CG+ F +   LS H+R H GEK  G S
Sbjct: 10  ERHYEC--SECGKAFIQKSTLSMHQRIHRGEKPSGPS 44


>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           507- 539) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 269 ENCGKNYFKSSHLKAHMRTHTGERP 293
           E CGK Y    +L  H + HTGERP
Sbjct: 16  EKCGKGYNSKFNLDMHQKVHTGERP 40



 Score = 28.1 bits (61), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C+   CG+ ++    L  H++ HTGE+  G
Sbjct: 10  EKPYKCEK--CGKGYNSKFNLDMHQKVHTGERPSG 42


>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
          Length = 29

 Score = 30.8 bits (68), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 301 CGRRFSRSDELSRHKRTHTGEK 322
           CG++F+ S  L RH R H+GEK
Sbjct: 8   CGKQFTTSGNLKRHLRIHSGEK 29



 Score = 29.6 bits (65), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 271 CGKNYFKSSHLKAHMRTHTGER 292
           CGK +  S +LK H+R H+GE+
Sbjct: 8   CGKQFTTSGNLKRHLRIHSGEK 29


>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           637- 667) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 30.8 bits (68), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           +GE+P+ C    CG+ F+   +L  HK  HTG K  G S
Sbjct: 6   SGEKPYSCN--ECGKAFTFKSQLIVHKGVHTGVKPSGPS 42


>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 268
          Length = 42

 Score = 30.8 bits (68), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGE 291
           ++ ECN  NCGK +   S L  H R HTGE
Sbjct: 9   KLHECN--NCGKAFSFKSQLIIHQRIHTGE 36



 Score = 28.1 bits (61), Expect = 8.6,   Method: Composition-based stats.
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           +GE+   C    CG+ FS   +L  H+R HTGE
Sbjct: 6   SGEKLHECN--NCGKAFSFKSQLIIHQRIHTGE 36


>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 224
          Length = 46

 Score = 30.8 bits (68), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 301 CGRRFSRSDELSRHKRTHTGEKKFGCS 327
           CG+ FSR+  L +H+R H+GEK  G S
Sbjct: 18  CGKSFSRAPCLLKHERLHSGEKPSGPS 44


>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           397- 429) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 30.8 bits (68), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/23 (56%), Positives = 15/23 (65%)

Query: 271 CGKNYFKSSHLKAHMRTHTGERP 293
           CGK +  SSHL  H   H+GERP
Sbjct: 18  CGKAFRVSSHLVQHHSVHSGERP 40



 Score = 30.4 bits (67), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ CQ   CG+ F  S  L +H   H+GE+  G S
Sbjct: 10  EKPYKCQV--CGKAFRVSSHLVQHHSVHSGERPSGPS 44



 Score = 29.6 bits (65), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
           EK + C +C + F  S HL +H   HS +    PS+
Sbjct: 10  EKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45


>pdb|2AB7|A Chain A, Solution Structures And Characterization Of Hiv Rre Iib
           Rna Targeting Zinc Finger Proteins
          Length = 29

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 294 FLCQWTGCGRRFSRSDELSRHKRTHT 319
           ++C +  CGR F+   +L+RHK+ HT
Sbjct: 3   YVCHFENCGRSFNDRRKLNRHKKIHT 28


>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
           Zinc Finger Protein
          Length = 28

 Score = 30.8 bits (68), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
           RP+ C  + CG+RFS   ++  H R HTG
Sbjct: 2   RPYSC--SVCGKRFSLKHQMETHYRVHTG 28


>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           426- 458) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 30.8 bits (68), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++C+   CGK + + +HL  H R HTG RP
Sbjct: 13  YKCS--ECGKAFHRHTHLNEHRRIHTGYRP 40



 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C  + CG+ F R   L+ H+R HTG +  G
Sbjct: 10  EKPYKC--SECGKAFHRHTHLNEHRRIHTGYRPSG 42


>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           724- 756) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 261 RRIFECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           +R +EC    CGK +   S L  H R+HTGE+P
Sbjct: 10  QRPYECI--ECGKAFKTKSSLICHRRSHTGEKP 40



 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           +RP+ C    CG+ F     L  H+R+HTGEK  G
Sbjct: 10  QRPYEC--IECGKAFKTKSSLICHRRSHTGEKPSG 42


>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           367- 399) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 30.4 bits (67), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ C+   CG+ F  +  L +H+R H+GEK  G S
Sbjct: 10  EKPYNCK--ECGKSFRWASCLLKHQRVHSGEKPSGPS 44



 Score = 28.9 bits (63), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 267 NYENCGKNYFKSSHLKAHMRTHTGERP 293
           N + CGK++  +S L  H R H+GE+P
Sbjct: 14  NCKECGKSFRWASCLLKHQRVHSGEKP 40


>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 30.4 bits (67), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 324 FGCSICNRRFMRSDHLAKHVKRHSKD 349
           F C +C R F R +HL +H + H+ +
Sbjct: 3   FVCEVCTRAFARQEHLKRHYRSHTNE 28



 Score = 30.0 bits (66), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 294 FLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           F+C+   C R F+R + L RH R+HT EK
Sbjct: 3   FVCEV--CTRAFARQEHLKRHYRSHTNEK 29


>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           519- 551) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 30.4 bits (67), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ C  + CG+ F+    L  H++ HTGE+  G S
Sbjct: 10  EKPYKC--SDCGKSFTWKSRLRIHQKCHTGERHSGPS 44



 Score = 28.1 bits (61), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 270 NCGKNYFKSSHLKAHMRTHTGER 292
           +CGK++   S L+ H + HTGER
Sbjct: 17  DCGKSFTWKSRLRIHQKCHTGER 39


>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
           Domain Of Zinc Finger Protein 347
          Length = 46

 Score = 30.0 bits (66), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C    CG+ FS    L+ H+  HTG+K  G
Sbjct: 10  EKPYECNQ--CGKAFSVRSSLTTHQAIHTGKKPSG 42



 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           +ECN   CGK +   S L  H   HTG++P
Sbjct: 13  YECN--QCGKAFSVRSSLTTHQAIHTGKKP 40


>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 30.0 bits (66), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 294 FLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           F+C+   C R F+R + L RH R+HT EK
Sbjct: 3   FVCEV--CTRAFARQEALKRHYRSHTNEK 29


>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
           Implications For Dna Binding
          Length = 29

 Score = 30.0 bits (66), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 294 FLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
           F+C+   C R F+R + L RH R+HT EK
Sbjct: 3   FVCEV--CTRAFARQEYLKRHYRSHTNEK 29



 Score = 28.5 bits (62), Expect = 6.2,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 324 FGCSICNRRFMRSDHLAKHVKRHSKD 349
           F C +C R F R ++L +H + H+ +
Sbjct: 3   FVCEVCTRAFARQEYLKRHYRSHTNE 28


>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           556- 588) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 29.6 bits (65), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ C    C + FS    L++H+R H+GEK  G S
Sbjct: 10  EKPYECDV--CRKAFSHHASLTQHQRVHSGEKPSGPS 44


>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           368- 400) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 29.6 bits (65), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C    CG+ F     L+ H+ TH+GEK  G
Sbjct: 10  EKPYKCNE--CGKAFRARSSLAIHQATHSGEKPSG 42



 Score = 29.3 bits (64), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++CN   CGK +   S L  H  TH+GE+P
Sbjct: 13  YKCN--ECGKAFRARSSLAIHQATHSGEKP 40


>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           341- 373) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 270 NCGKNYFKSSHLKAHMRTHTGERP 293
           +CGK + ++S+   H R HTGE+P
Sbjct: 17  DCGKFFLQASNFIQHRRIHTGEKP 40


>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           780- 812) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 29.6 bits (65), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGER 292
           +EC  + C K + +  HL  H R HTGER
Sbjct: 13  YEC--KECRKTFIQIGHLNQHKRVHTGER 39


>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
           From Human Insulinoma-Associated Protein 1 (Fragment
           424-497), Northeast Structural Genomics Consortium
           Target Hr7614b
          Length = 85

 Score = 29.3 bits (64), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 301 CGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKR 345
           CG  F+      RH R     + F C  C   F  S  L +H+ +
Sbjct: 34  CGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINK 78


>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger Domain:
           Insights Into Adr1-Uas1 Protein-Dna Recognition
          Length = 30

 Score = 29.3 bits (64), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 324 FGCSICNRRFMRSDHLAKHVKR-HS 347
           + C +CNR F R D L +H ++ HS
Sbjct: 3   YACGLCNRAFTRRDLLIRHAQKIHS 27


>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
           Of Zinc Finger Protein 347
          Length = 46

 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C    CG+ F     L+ H+  HTGEK  G
Sbjct: 10  EKPYKCNE--CGKAFRAHSNLTTHQVIHTGEKPSG 42



 Score = 28.1 bits (61), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
           ++CN   CGK +   S+L  H   HTGE+P
Sbjct: 13  YKCN--ECGKAFRAHSNLTTHQVIHTGEKP 40


>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           283- 315) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+PF C    CG+ F     L+RH   HT EK  G
Sbjct: 10  EKPFKCDI--CGKSFCGRSRLNRHSMVHTAEKPSG 42


>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           631- 663) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 29.3 bits (64), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C    CG+ F+    L  H++ HTGEK  G
Sbjct: 10  EKPYRCAE--CGKAFTDRSNLFTHQKIHTGEKPSG 42


>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           284- 316) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 29.3 bits (64), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           T E+P+ C    CG+ F     L+ H+  HTGEK+ G
Sbjct: 8   TKEKPYKCYE--CGKAFRTRSNLTTHQVIHTGEKRSG 42


>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           495- 525) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 29.3 bits (64), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGE 291
           + CN   CGK +   S+L  H RTHTGE
Sbjct: 13  YVCN--ECGKAFRSKSYLIIHTRTHTGE 38



 Score = 28.5 bits (62), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
           +P++C    CG+ F     L  H RTHTGE
Sbjct: 11  KPYVCNE--CGKAFRSKSYLIIHTRTHTGE 38


>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           719- 751) Of Human Zinc Finger Protein 268
          Length = 46

 Score = 29.3 bits (64), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P  C+   CG+ FS + +L  H+R HTGE   G
Sbjct: 10  EKPHECRE--CGKSFSFNSQLIVHQRIHTGENPSG 42



 Score = 28.5 bits (62), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 271 CGKNYFKSSHLKAHMRTHTGERP 293
           CGK++  +S L  H R HTGE P
Sbjct: 18  CGKSFSFNSQLIVHQRIHTGENP 40


>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           528- 560) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 28.9 bits (63), Expect = 4.7,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ C    C + F     L+ H+R HTGEK  G S
Sbjct: 10  EKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKPSGPS 44


>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
           771- 803) Of Human Zinc Finger Protein 484
          Length = 46

 Score = 28.9 bits (63), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P++C    CG+ F+    L +H++ HT +K  G
Sbjct: 10  EKPYIC--AECGKAFTIRSNLIKHQKIHTKQKPSG 42


>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           204- 236) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 28.9 bits (63), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           +P+ C  + CG+ FS S  L++H  THT EK  G S
Sbjct: 11  KPYQC--SECGKSFSGSYRLTQHWITHTREKPSGPS 44


>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           696- 728) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 28.9 bits (63), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           E+P+ C    CG+ F  +   ++H+R HTG++  G
Sbjct: 10  EKPYKCME--CGKAFGDNSSCTQHQRLHTGQRPSG 42


>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           311- 343) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 28.9 bits (63), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
           T E+PF C    C + F +   L+ H+  HTGEK  G
Sbjct: 8   TAEKPFRCDT--CDKSFRQRSALNSHRMIHTGEKPSG 42


>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
          Length = 26

 Score = 28.9 bits (63), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 322 KKFGCSICNRRFMRSDHLAKHVKRH 346
           K + C  C +RF++S  LA H++ H
Sbjct: 1   KPYVCERCGKRFVQSSQLANHIRHH 25



 Score = 28.1 bits (61), Expect = 9.1,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)

Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTH 318
           +P++C+   CG+RF +S +L+ H R H
Sbjct: 1   KPYVCE--RCGKRFVQSSQLANHIRHH 25


>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
          Length = 389

 Score = 28.5 bits (62), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 21  SVIMKVNKDGTCIPDPFGIREMKPKQIKDISLKKMLNVQ 59
           S +  + KD    P    IRE+KP+Q+K++S  +M N++
Sbjct: 320 SDLTALAKDAALGP----IRELKPEQVKNMSASEMRNIR 354


>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
           Zinc Finger Protein 32
          Length = 42

 Score = 28.5 bits (62), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
           E+P+ C    CG+ FS+   L  H R HTG
Sbjct: 9   EKPYRCD--QCGKAFSQKGSLIVHIRVHTG 36


>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
 pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
          Length = 508

 Score = 28.1 bits (61), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 56  LNVQDMRKKCVQMNNEETSYNILKSLKYKMSDRKEMIFVESKDTNRDKETSEEAANHETK 115
           L+V+ +++  +   +EE  YN+L  L   ++  + +IF + KDT  +      A  H   
Sbjct: 326 LSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTV- 384

Query: 116 NACVNTKSTCVPLEASENEAFQANIQMDASTTCADMTSFVPALPRSQ 162
            AC+        LE ++ +A   + ++  S            +  SQ
Sbjct: 385 -ACLTGN-----LEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQ 425


>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           411- 441) Of Human Zinc Finger Protein 268
          Length = 44

 Score = 28.1 bits (61), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGE 291
           +ECN   C K +   S+L  H RTHTGE
Sbjct: 13  YECN--ECQKAFNTKSNLMVHQRTHTGE 38


>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
           Zinc Finger Protein 278
          Length = 48

 Score = 28.1 bits (61), Expect = 8.8,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 269 ENCGKNYFKSSHLKAHMRTHTGERPF 294
           E CGK +    HL  H  +H+GE+P+
Sbjct: 16  EICGKIFRDVYHLNRHKLSHSGEKPY 41


>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           339- 371) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 28.1 bits (61), Expect = 8.8,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
           E+P+ C+   CG+ F    +L  H   HTGEK  G S
Sbjct: 10  EKPYKCE--ECGKGFICRRDLYTHHMVHTGEKPSGPS 44


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.130    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,086,160
Number of Sequences: 62578
Number of extensions: 377623
Number of successful extensions: 1514
Number of sequences better than 100.0: 191
Number of HSP's better than 100.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 523
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)