RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17740
(384 letters)
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 182 bits (464), Expect = 8e-58
Identities = 58/97 (59%), Positives = 68/97 (70%)
Query: 250 KSNKPATNDPRRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSD 309
S + +RRI C+Y C K Y KSSHLKAH+RTHTGE+P+ C W GC RF+RSD
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD 61
Query: 310 ELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
EL+RH R HTG K F C +CNR F RSDHLA H+KRH
Sbjct: 62 ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 93.1 bits (232), Expect = 1e-23
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHT 319
++C +E C + +S L H R HTG +PF C C R FSRSD L+ H + H
Sbjct: 46 YKCTWEGCDWRFARSDELTRHYRKHTGAKPFQC--GVCNRSFSRSDHLALHMKRHQ 99
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 179 bits (456), Expect = 1e-56
Identities = 54/87 (62%), Positives = 64/87 (73%)
Query: 260 RRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHT 319
R C+Y CGK Y KSSHLKAH+RTHTGE+P+ C W GCG +F+RSDEL+RH R HT
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 320 GEKKFGCSICNRRFMRSDHLAKHVKRH 346
G + F C C+R F RSDHLA H+KRH
Sbjct: 62 GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 36.4 bits (85), Expect = 0.002
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 318 HTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
T + C + + +S HL H++ H+
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHT 31
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 151 bits (384), Expect = 5e-46
Identities = 28/83 (33%), Positives = 41/83 (49%)
Query: 263 IFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
++ C++ENCGK + K + LK H +HT + P+ C GC +RFS L RH++ H G
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYP 60
Query: 323 KFGCSICNRRFMRSDHLAKHVKR 345
C+ KHV
Sbjct: 61 CKKDDSCSFVGKTWTLYLKHVAE 83
Score = 76.1 bits (188), Expect = 1e-17
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSR-HKRTH 318
+EC +E C K + S LK H + H G C + H
Sbjct: 32 YECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD--SCSFVGKTWTLYLKHVAECH 85
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 137 bits (346), Expect = 1e-40
Identities = 34/71 (47%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Query: 277 KSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRS 336
++L ++ RP+ C C RRFSRSDEL+RH R HTG+K F C IC R F RS
Sbjct: 5 PMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRS 62
Query: 337 DHLAKHVKRHS 347
DHL H++ H+
Sbjct: 63 DHLTTHIRTHT 73
Score = 93.1 bits (232), Expect = 6e-24
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 249 KKSNKPATNDPRRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRS 308
+N P+ R + C E+C + + +S L H+R HTG++PF C C R FSRS
Sbjct: 5 PMNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRS 62
Query: 309 DELSRHKRTHT 319
D L+ H RTHT
Sbjct: 63 DHLTTHIRTHT 73
Score = 49.2 bits (118), Expect = 3e-08
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 304 RFSRSDELSRHKRTHTGEKKFGCSI--CNRRFMRSDHLAKHVKRHS 347
+ L + + + C + C+RRF RSD L +H++ H+
Sbjct: 2 EPHPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHIRIHT 45
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 133 bits (338), Expect = 1e-38
Identities = 47/83 (56%), Positives = 55/83 (66%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
F C Y C K YFK SHL+ H R HTGE+P+ C + C RRFSRSD+L RH+R HTG K
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKP 66
Query: 324 FGCSICNRRFMRSDHLAKHVKRH 346
F C C R+F RSDHL H + H
Sbjct: 67 FQCKTCQRKFSRSDHLKTHTRTH 89
Score = 116 bits (294), Expect = 3e-32
Identities = 39/85 (45%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
++C++++C + + +S LK H R HTG +PF C C R+FSRSD L H RTHTGEK
Sbjct: 37 YQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQC--KTCQRKFSRSDHLKTHTRTHTGEKP 94
Query: 324 FGCSI--CNRRFMRSDHLAKHVKRH 346
F C C ++F RSD L +H H
Sbjct: 95 FSCRWPSCQKKFARSDELVRHHNMH 119
Score = 83.7 bits (208), Expect = 6e-20
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSI--CNRRFMRSDHLAKHVKRH 346
+ +RPF+C + GC +R+ + L H R HTGEK + C C RRF RSD L +H +RH
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 127 bits (320), Expect = 8e-37
Identities = 44/70 (62%), Positives = 51/70 (72%)
Query: 249 KKSNKPATNDPRRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRS 308
S+ P + R R C++ CGK YFKSSHLKAH RTHTGE+PF C W GC RRF+RS
Sbjct: 3 SGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARS 62
Query: 309 DELSRHKRTH 318
DELSRH+RTH
Sbjct: 63 DELSRHRRTH 72
Score = 99.0 bits (247), Expect = 4e-26
Identities = 30/71 (42%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 278 SSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSI--CNRRFMR 335
SS + R +C GCG+ + +S L H RTHTGEK F CS C RRF R
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 336 SDHLAKHVKRH 346
SD L++H + H
Sbjct: 62 SDELSRHRRTH 72
Score = 44.7 bits (106), Expect = 1e-06
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 308 SDELSRHKRTHTGEKKFGCSI--CNRRFMRSDHLAKHVKRHS 347
S S + + + CS C + + +S HL H + H+
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHT 43
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 121 bits (306), Expect = 2e-34
Identities = 41/83 (49%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
+ C E+C + + +S L H+R HTG++PF C C R FSRSD L+ H RTHTGEK
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLTTHIRTHTGEKP 62
Query: 324 FGCSICNRRFMRSDHLAKHVKRH 346
F C IC R+F RSD +H K H
Sbjct: 63 FACDICGRKFARSDERKRHTKIH 85
Score = 94.5 bits (236), Expect = 3e-24
Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 4/59 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
F+C C +N+ +S HL H+RTHTGE+PF C CGR+F+RSDE RH + H +K
Sbjct: 35 FQC--RICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHTKIHLRQK 89
Score = 84.8 bits (211), Expect = 1e-20
Identities = 31/56 (55%), Positives = 37/56 (66%)
Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
ERP+ C C RRFS+S L+RH R HTG+K F C IC R F RSDHL H++ H
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 57
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 121 bits (305), Expect = 2e-33
Identities = 33/87 (37%), Positives = 55/87 (63%), Gaps = 3/87 (3%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHK-RTHTGEK 322
+C +E C K+Y + +LK H+R+HTGE+P++C+ GC + FS + + ++H+ RTH+ EK
Sbjct: 68 HKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEK 127
Query: 323 KFGCSI--CNRRFMRSDHLAKHVKRHS 347
+ C + C +R+ L KHVK
Sbjct: 128 PYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 115 bits (290), Expect = 3e-31
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 265 ECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKF 324
+ + L HMR HTGE+P C + GC + +SR + L H R+HTGEK +
Sbjct: 39 WGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPY 98
Query: 325 GC--SICNRRFMRSDHLAKHVKR 345
C C++ F + AKH R
Sbjct: 99 MCEHEGCSKAFSNASDRAKHQNR 121
Score = 98.4 bits (246), Expect = 5e-25
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 264 FECNYENCGKNYFKSSHLKAHM---RTHTGERPFLCQWTGC---GRRFSRSDELSRHKRT 317
+ C + + L H+ H + F+C W GC R F L H R
Sbjct: 4 CRW--DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR 61
Query: 318 HTGEKKFGCSI--CNRRFMRSDHLAKHVKRH 346
HTGEK C+ C + + R ++L H++ H
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 89.6 bits (223), Expect = 9e-22
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 264 FECNYENCGKNYFKSSHLKAHM-RTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
+ C +E C K + +S H RTH+ E+P++C+ GC +R++ L +H +T G
Sbjct: 98 YMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 63.4 bits (155), Expect = 3e-12
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 291 ERPFLCQWTGCGRRFSRSDELSRH---KRTHTGEKKF-----GCSICNRRFMRSDHLAKH 342
E C+W GC + F ++L H + H K+F GCS R F L H
Sbjct: 1 ETD--CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Query: 343 VKRHS 347
++RH+
Sbjct: 59 MRRHT 63
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 118 bits (297), Expect = 7e-32
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
+ C++ +CG Y K+ L+AH+ HTGE+PF C+ GC + F+ L+RH THTGEK
Sbjct: 13 YICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKN 72
Query: 324 FGCS--ICNRRFMRSDHLAKHVKRH 346
F C C+ RF ++ KH R
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 106 bits (267), Expect = 1e-27
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
+ C++ENCGK + K + LK H +HT + P+ C GC +RFS L RH++ H G
Sbjct: 105 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 164
Query: 324 FGCSICNRRFMRSDHLAKHVKR 345
C+ KHV
Sbjct: 165 KKDDSCSFVGKTWTLYLKHVAE 186
Score = 105 bits (265), Expect = 3e-27
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
F C E C K + HL H THTGE+ F C GC RF+ + +H K
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKI 102
Query: 324 --FGCSI--CNRRFMRSDHLAKHVKRH 346
+ C C + F + + L H H
Sbjct: 103 CVYVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 102 bits (256), Expect = 5e-26
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGER--PFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
F C+ + C + +++K H + ++C + CG+ F + ++L H+ +HT +
Sbjct: 73 FTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ 132
Query: 322 KKFGCS--ICNRRFMRSDHLAKHVKRH 346
+ C C++RF L +H K H
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVH 159
Score = 86.1 bits (214), Expect = 4e-20
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS--ICNRRFMRSDHLA 340
+ ++C + CG ++++ +L H HTGEK F C C + F HL
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLT 61
Query: 341 KHVKRH 346
+H H
Sbjct: 62 RHSLTH 67
Score = 27.2 bits (61), Expect = 7.5
Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHT 289
C++ GK + + +LK H
Sbjct: 168 DSCSF--VGKTW--TLYLKHVAECHQ 189
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 116 bits (292), Expect = 1e-31
Identities = 42/97 (43%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 253 KPATNDPRRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELS 312
P N+ EC GK++ L H+R HTGE+PF C + GCG+ F+RS+ L
Sbjct: 52 GPEQNNHVCYWEECP--REGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLK 109
Query: 313 RHKRTHTGEKKFGCSI--CNRRFMRSDHLAKHVKRHS 347
HKRTHTGEK F C C+RRF S KH+ H+
Sbjct: 110 IHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Score = 109 bits (275), Expect = 4e-29
Identities = 29/64 (45%), Positives = 40/64 (62%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
F C + CGK + +S +LK H RTHTGE+PF C++ GC RRF+ S + +H HT +K
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKS 150
Query: 324 FGCS 327
S
Sbjct: 151 GPSS 154
Score = 97.4 bits (243), Expect = 1e-24
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPF----LCQWTGC---GRRFSRSDELSRHKR 316
++C + + L H+ P +C W C G+ F +L H R
Sbjct: 26 RPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
Query: 317 THTGEKKFGCSI--CNRRFMRSDHLAKHVKRH 346
HTGEK F C C + F RS++L H + H
Sbjct: 84 VHTGEKPFPCPFPGCGKIFARSENLKIHKRTH 115
Score = 83.1 bits (206), Expect = 2e-19
Identities = 13/87 (14%), Positives = 21/87 (24%), Gaps = 11/87 (12%)
Query: 270 NCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKF----- 324
+ G + + + C R FS EL H
Sbjct: 2 SSGSSGQPIKQELSCKWIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHV 59
Query: 325 ----GCSICNRRFMRSDHLAKHVKRHS 347
C + F L H++ H+
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHIRVHT 86
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 112 bits (284), Expect = 1e-30
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
C CGK + +SS LK H HTGE+PF C + GCG+RFS L H R HTG++
Sbjct: 35 HVCA--ECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRP 92
Query: 324 FGCSI--CNRRFMRSDHLAKHVKRH 346
+ C CN++F +S +L H+ H
Sbjct: 93 YVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 104 bits (263), Expect = 8e-28
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
C ++ C K + +S ++ H+ TH G R +C CG+ F S +L RH+ HTGEK
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVC--AECGKAFVESSKLKRHQLVHTGEKP 62
Query: 324 FGCSI--CNRRFMRSDHLAKHVKRH 346
F C+ C +RF +L HV+ H
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 102 bits (257), Expect = 8e-27
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
F+C +E CGK + +L+ H+R HTG+RP++C + GC ++F++S L H TH K
Sbjct: 63 FQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKN 122
Query: 324 F 324
Sbjct: 123 N 123
Score = 65.6 bits (161), Expect = 2e-13
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
R C GC + F + + +H TH G + C+ C + F+ S L +H H
Sbjct: 3 PRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVH 57
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 108 bits (273), Expect = 1e-29
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
F+C C +N+ +S HL H+RTHTGE+PF C CGR+F+RSDE RH+
Sbjct: 4 FQC--RICMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRHRDIQH-ILP 58
Query: 324 FGCSICNRRFMRSDHLAKHVKRH 346
++ HL V R
Sbjct: 59 ILEDKVEELLSKNYHLENEVARL 81
Score = 77.2 bits (191), Expect = 5e-18
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHK---RTHTG 320
F C + CG+ + +S K H P L S++ L + G
Sbjct: 32 FAC--DICGRKFARSDERKRHRDIQH-ILPILE--DKVEELLSKNYHLENEVARLKKLVG 86
Query: 321 EK 322
E+
Sbjct: 87 ER 88
Score = 74.5 bits (184), Expect = 6e-17
Identities = 29/55 (52%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+PF C C R FSRSD L+ H RTHTGEK F C IC R+F RSD +H
Sbjct: 2 KPFQC--RICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQ 54
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 108 bits (272), Expect = 1e-29
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 264 FECNYENCGKNYFKSSHLKAHMR-THTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
C++ CG+ + +L H + H ++ F C CG+ F+ L H + H+ +
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
Query: 323 KFGCSICNRRF 333
+ C
Sbjct: 68 DYICEFSGPSS 78
Score = 85.7 bits (213), Expect = 4e-21
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 288 HTGERPFLCQWTGCGRRFSRSDELSRHKR-THTGEKKFGCS--ICNRRFMRSDHLAKHVK 344
+G C + GCGR FS L+ HK+ H +K F C C + F HL +H+K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMK 61
Query: 345 RHS 347
HS
Sbjct: 62 LHS 64
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 106 bits (266), Expect = 2e-28
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE-- 321
C CGK + HL H +H+GE+P+ C CG RF R D +S H R+H G
Sbjct: 8 VACE--ICGKIFRDVYHLNRHKLSHSGEKPYSC--PVCGLRFKRKDRMSYHVRSHDGSVG 63
Query: 322 KKFGCSICNRRFMRSDHLAKHVKR 345
K + C C + F R DHL H+K+
Sbjct: 64 KPYICQSCGKGFSRPDHLNGHIKQ 87
Score = 79.5 bits (197), Expect = 1e-18
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 288 HTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+G C CG+ F L+RHK +H+GEK + C +C RF R D ++ HV+ H
Sbjct: 2 SSGSSGVAC--EICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 78.3 bits (194), Expect = 3e-18
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGE--RPFLCQWTGCGRRFSRSDELSRH-KRTHTG 320
+ C CG + + + H+R+H G +P++C CG+ FSR D L+ H K+ H+G
Sbjct: 36 YSCP--VCGLRFKRKDRMSYHVRSHDGSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHSG 91
Query: 321 EK 322
Sbjct: 92 PS 93
Score = 38.6 bits (91), Expect = 3e-04
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 318 HTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+G C IC + F HL +H HS
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHS 31
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 103 bits (259), Expect = 4e-28
Identities = 27/45 (60%), Positives = 33/45 (73%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+PF C W GCG RFSRSDELSRH+R+H+G K G S
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 57.7 bits (140), Expect = 2e-11
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQ 297
F C + CG + +S L H R+H+G +P
Sbjct: 13 FACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 102 bits (258), Expect = 2e-27
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
F+C CGK++ +SS L H+ H+ RP+ CQ+ CG+RF + ++ +H HTGEK
Sbjct: 2 FDCK--ICGKSFKRSSTLSTHLLIHSDTRPYPCQY--CGKRFHQKSDMKKHTFIHTGEKP 57
Query: 324 FGCSICNRRFMRSDHLAKHVKRH 346
C +C + F +S +L H ++H
Sbjct: 58 HKCQVCGKAFSQSSNLITHSRKH 80
Score = 77.8 bits (193), Expect = 2e-18
Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
+ C Y CGK + + S +K H HTGE+P CQ CG+ FS+S L H R HTG
Sbjct: 30 YPCQY--CGKRFHQKSDMKKHTFIHTGEKPHKCQV--CGKAFSQSSNLITHSRKHTG 82
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 102 bits (256), Expect = 5e-27
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
+C CGK + + LK HMR HTG +P+ C+ C + S L++H R H+ E+
Sbjct: 9 HKCEV--CGKCFSRKDKLKTHMRCHTGVKPYKCK--TCDYAAADSSSLNKHLRIHSDERP 64
Query: 324 FGCSICNRRFMRSDHLAKHVKRH 346
F C IC S L H++ H
Sbjct: 65 FKCQICPYASRNSSQLTVHLRSH 87
Score = 84.8 bits (211), Expect = 1e-20
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
++C C SS L H+R H+ ERPF CQ C S +L+ H R+HTG+
Sbjct: 37 YKCK--TCDYAAADSSSLNKHLRIHSDERPFKCQI--CPYASRNSSQLTVHLRSHTGDSG 92
Query: 324 FGC 326
Sbjct: 93 PSS 95
Score = 78.6 bits (195), Expect = 2e-18
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 287 THTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ P C+ CG+ FSR D+L H R HTG K + C C+ S L KH++ H
Sbjct: 2 SSGSSGPHKCE--VCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIH 59
Query: 347 S 347
S
Sbjct: 60 S 60
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 100 bits (251), Expect = 1e-26
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 280 HLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE--KKFGCSICNRRFMRSD 337
+ RTH+GE+P+ C C RF++S + H E KF C C+ R
Sbjct: 2 SSGSSGRTHSGEKPYEC--YICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS 59
Query: 338 HLAKHVKRH 346
L H+++
Sbjct: 60 DLGVHLRKQ 68
Score = 77.2 bits (191), Expect = 4e-18
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGE--RPFLCQWTGCGRRFSRSDELSRHKRT-HTG 320
+EC C + +S +K H+ E F C C +R +L H R H+
Sbjct: 16 YECYI--CHARFTQSGTMKMHILQKHTENVAKFHC--PHCDTVIARKSDLGVHLRKQHSY 71
Query: 321 EK 322
Sbjct: 72 SG 73
Score = 44.4 bits (106), Expect = 2e-06
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRT-HTGERPF 294
F C + C + S L H+R H+ P
Sbjct: 46 FHCPH--CDTVIARKSDLGVHLRKQHSYSGPS 75
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 99.8 bits (250), Expect = 4e-26
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
F C CG+++ KS +L H RTHT ERP+ C C + F R D L H+ H+ EK
Sbjct: 18 FICK--FCGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSKEKP 73
Query: 324 FGCSICNRRFMRSDHLAKHVKRH 346
F C C + F +S LA H H
Sbjct: 74 FKCQECGKGFCQSRTLAVHKTLH 96
Score = 93.3 bits (233), Expect = 1e-23
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 278 SSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSD 337
SS ++ F+C+ CGR F++S L H+RTHT E+ + C IC++ F R D
Sbjct: 2 SSGSSGGRLPSKTKKEFICK--FCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQD 59
Query: 338 HLAKHVKRHS 347
HL H HS
Sbjct: 60 HLRDHRYIHS 69
Score = 85.6 bits (213), Expect = 8e-21
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
+ C+ C K + + HL+ H H+ E+PF CQ CG+ F +S L+ HK H
Sbjct: 46 YTCD--ICHKAFRRQDHLRDHRYIHSKEKPFKCQ--ECGKGFCQSRTLAVHKTLHMQTSS 101
Query: 324 FGCS 327
+
Sbjct: 102 PTAA 105
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 99.9 bits (250), Expect = 6e-26
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 264 FECNYENCGKNYFKSSHLKAHMR---THTGERPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
FEC CGK YF+ +L H + E+ F C + C F R EL H +HTG
Sbjct: 36 FECP--KCGKCYFRKENLLEHEARNCMNRSEQVFTC--SVCQETFRRRMELRLHMVSHTG 91
Query: 321 EKKFGCSICNRRFMRSDHLAKHVKR 345
E + CS C+++FM+ L H+ +
Sbjct: 92 EMPYKCSSCSQQFMQKKDLQSHMIK 116
Score = 98.7 bits (247), Expect = 2e-25
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKR---THTG 320
EC C K + +LK H R HTGE+PF C CG+ + R + L H+ +
Sbjct: 8 VECP--TCHKKFLSKYYLKVHNRKHTGEKPFEC--PKCGKCYFRKENLLEHEARNCMNRS 63
Query: 321 EKKFGCSICNRRFMRSDHLAKHVKRH 346
E+ F CS+C F R L H+ H
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 79.1 bits (196), Expect = 2e-18
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHK-RTHTGEK 322
F C+ C + + + L+ HM +HTGE P+ C + C ++F + +L H + H+G
Sbjct: 67 FTCS--VCQETFRRRMELRLHMVSHTGEMPYKC--SSCSQQFMQKKDLQSHMIKLHSGPS 122
Score = 73.3 bits (181), Expect = 3e-16
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 288 HTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKH 342
+G C C ++F L H R HTGEK F C C + + R ++L +H
Sbjct: 2 SSGSSGVEC--PTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 36.7 bits (86), Expect = 0.002
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 318 HTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+G C C+++F+ +L H ++H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKH 30
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 100 bits (252), Expect = 2e-25
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
+ C CGK++ +S HL H RTHTGE+P+ C CG+ FS +L+RH+RTHTGEK
Sbjct: 22 YACP--ECGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTGEKP 77
Query: 324 FGCSICNRRFMRSDHLAKHVKRH 346
+ C C + F + +L H + H
Sbjct: 78 YKCPECGKSFSQRANLRAHQRTH 100
Score = 98.7 bits (247), Expect = 1e-24
Identities = 39/83 (46%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
+ C CGK++ + +HL+AH RTHTGE+P+ C CG+ FSR D L H+RTHTGEK
Sbjct: 106 YACP--ECGKSFSQLAHLRAHQRTHTGEKPYKC--PECGKSFSREDNLHTHQRTHTGEKP 161
Query: 324 FGCSICNRRFMRSDHLAKHVKRH 346
+ C C + F R D L H + H
Sbjct: 162 YKCPECGKSFSRRDALNVHQRTH 184
Score = 98.7 bits (247), Expect = 1e-24
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
++C CGK++ + ++L+AH RTHTGE+P+ C CG+ FS+ L H+RTHTGEK
Sbjct: 78 YKCP--ECGKSFSQRANLRAHQRTHTGEKPYAC--PECGKSFSQLAHLRAHQRTHTGEKP 133
Query: 324 FGCSICNRRFMRSDHLAKHVKRH 346
+ C C + F R D+L H + H
Sbjct: 134 YKCPECGKSFSREDNLHTHQRTH 156
Score = 89.4 bits (223), Expect = 2e-21
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 276 FKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMR 335
F SS A GE+P+ C CG+ FSRSD L+ H+RTHTGEK + C C + F
Sbjct: 4 FGSSSSVAQAALEPGEKPYAC--PECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSD 61
Query: 336 SDHLAKHVKRH 346
L +H + H
Sbjct: 62 KKDLTRHQRTH 72
Score = 81.7 bits (203), Expect = 2e-18
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
++C CGK++ + +L H RTHTGE+P+ C CG+ FSR D L+ H+RTHTG+K
Sbjct: 134 YKCP--ECGKSFSREDNLHTHQRTHTGEKPYKC--PECGKSFSRRDALNVHQRTHTGKK 188
Score = 54.0 bits (131), Expect = 7e-09
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 305 FSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
S GEK + C C + F RSDHLA+H + H
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEHQRTH 44
Score = 45.5 bits (109), Expect = 5e-06
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
++C CGK++ + L H RTHTG++
Sbjct: 162 YKCP--ECGKSFSRRDALNVHQRTHTGKKT 189
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 96.7 bits (242), Expect = 6e-25
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
+ C CGK++ S HM H G RP+ C CG++F L H + HTG K
Sbjct: 11 YPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGC--GVCGKKFKMKHHLVGHMKIHTGIKP 65
Query: 324 FGCSICNRRFMRSDHLAKHV 343
+ C+IC +RFM D +HV
Sbjct: 66 YECNICAKRFMWRDSFHRHV 85
Score = 87.9 bits (219), Expect = 1e-21
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
+ C CGK + HL HM+ HTG +P+ C C +RF D H+ + K
Sbjct: 38 YGCG--VCGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSF--HRHVTSCTKS 91
Query: 324 FGCSICNRRFMRSDHLA 340
+ + + + +
Sbjct: 92 YEAAKAEQNTTEASGPS 108
Score = 83.6 bits (208), Expect = 4e-20
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 285 MRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVK 344
+G++ + CQ CG+ F+ + RH H G + +GC +C ++F HL H+K
Sbjct: 2 SSGSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
Query: 345 RHS 347
H+
Sbjct: 59 IHT 61
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 93.8 bits (234), Expect = 3e-24
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 286 RTHTGERPFLCQWTGCGRRFSRSDELSRHKRT--HTGEKKFGCSICNRRFMRSDHLAKHV 343
T GE + C C R ++ RH T K + C C + F R D++ HV
Sbjct: 3 FTKEGEHTYRC--KVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Query: 344 KRHSK 348
K K
Sbjct: 61 KIIHK 65
Score = 78.7 bits (195), Expect = 8e-19
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 262 RIFECNYENCGKNYFKSSHLKAHMRT--HTGERPFLCQWTGCGRRFSRSDELSRHKRTHT 319
+ C C + Y S+ H T + + C + C + F+R D ++ H +
Sbjct: 9 HTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMTAHVKIIH 64
Query: 320 G 320
Sbjct: 65 K 65
Score = 48.7 bits (117), Expect = 4e-08
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 315 KRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKDG 350
+ T GE + C +C+R + + +H K
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRN 37
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 91.7 bits (229), Expect = 2e-23
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 278 SSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSD 337
H H ++P+ C C F L+ HK HTGEK + C+IC +F R
Sbjct: 2 GHHHHHHSHMTHSDKPYKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPA 59
Query: 338 HLAKHVKRH 346
+L H + H
Sbjct: 60 NLKTHTRIH 68
Score = 81.3 bits (202), Expect = 1e-19
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
++C+ C ++ +L +H HTGE+P+ C CG +F+R L H R H+GEK
Sbjct: 18 YKCD--RCQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKTHTRIHSGEK 72
Score = 47.1 bits (113), Expect = 2e-07
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPF 294
+ CN CG + + ++LK H R H+GE+P+
Sbjct: 46 YRCN--ICGAQFNRPANLKTHTRIHSGEKPY 74
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 88.7 bits (221), Expect = 3e-22
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 277 KSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRS 336
S R + C CG+ FS S +LS+H+RTHTGEK + C C + F++
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDE--CGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQR 59
Query: 337 DHLAKH 342
HL H
Sbjct: 60 SHLIGH 65
Score = 80.6 bits (200), Expect = 2e-19
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
++C+ CGK++ SS L H RTHTGE+P+ C CG+ F + L H R HTG
Sbjct: 19 YKCDE--CGKSFSHSSDLSKHRRTHTGEKPYKCD--ECGKAFIQRSHLIGHHRVHTGSG 73
Score = 48.6 bits (117), Expect = 5e-08
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 308 SDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
S R + +++ C C + F S L+KH + H
Sbjct: 3 SGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTH 41
Score = 45.1 bits (108), Expect = 9e-07
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPF 294
++C+ CGK + + SHL H R HTG P
Sbjct: 47 YKCD--ECGKAFIQRSHLIGHHRVHTGSGPS 75
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 85.6 bits (213), Expect = 2e-21
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRH-KRTHTGEK 322
F C C + + + HLK H R+HT E+P+ C C R F+R D L RH ++ H+G
Sbjct: 3 FVCE--VCTRAFARQEHLKRHYRSHTNEKPYPC--GLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 76.8 bits (190), Expect = 4e-18
Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKR 345
R F+C C R F+R + L RH R+HT EK + C +CNR F R D L +H ++
Sbjct: 1 RSFVC--EVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 85.3 bits (212), Expect = 6e-21
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGE----RPFLCQWTGCGRRFSRSDELSRHKRTHT 319
+ C++ C K + + L H + + F+C + CG+ F+R + ++RH
Sbjct: 16 YACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAAFVC--SKCGKTFTRRNTMARHADNCA 71
Query: 320 GEKKFGCSICNRRF 333
G
Sbjct: 72 GPDGVEGENSGPSS 85
Score = 83.0 bits (206), Expect = 4e-20
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 280 HLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGE----KKFGCSICNRRFMR 335
+ RTHTGE+P+ C + C + F + L H + + F CS C + F R
Sbjct: 2 SSGSSGRTHTGEKPYAC--SHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTR 59
Query: 336 SDHLAKHVKRH 346
+ +A+H
Sbjct: 60 RNTMARHADNC 70
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 82.2 bits (204), Expect = 5e-20
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
+C+ C + + L+ H R H +RPF C C + LS+H + G+
Sbjct: 10 EKCS--ECSYSCSSKAALRIHERIHCTDRPFKC--NYCSFDTKQPSNLSKHMKKFHGDMS 65
Query: 324 FGCS 327
S
Sbjct: 66 GPSS 69
Score = 81.0 bits (201), Expect = 1e-19
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 286 RTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKR 345
+ + P C + C S L H+R H ++ F C+ C+ + +L+KH+K+
Sbjct: 2 SSGSSGHPEKC--SECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Query: 346 H 346
Sbjct: 60 F 60
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 81.3 bits (201), Expect = 1e-19
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 288 HTGERPFLCQWTGCGRRFSRSDELSRHKRTHT---GEKKFGCSICNRRFMRSDHLAKHVK 344
+G C+ CG + L+ H+R H +F C C +RF + D +A H
Sbjct: 2 SSGSSGLQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRS 59
Query: 345 RHSKDGAITPSNIGTPS 361
+ + P PS
Sbjct: 60 KSHPALLLAPQESSGPS 76
Score = 73.2 bits (180), Expect = 1e-16
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHT---GERPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
+C CG + + L H R H F C++ CG+RF + D ++ H+
Sbjct: 8 LQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCEF--CGKRFEKPDSVAAHRSKSHP 63
Query: 321 EKKFGC 326
Sbjct: 64 ALLLAP 69
Score = 40.5 bits (95), Expect = 5e-05
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQ 297
F C + CGK + K + AH Q
Sbjct: 39 FPCEF--CGKRFEKPDSVAAHRSKSHPALLLAPQ 70
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 81.0 bits (201), Expect = 2e-19
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 281 LKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLA 340
H+GE+P+ C CG+ FSRS L +H+R HTGEK + C C + F ++ L
Sbjct: 2 SSGSSGIHSGEKPYGCVE--CGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLI 59
Query: 341 KHVKRHS 347
H + H+
Sbjct: 60 NHQRIHT 66
Score = 80.2 bits (199), Expect = 2e-19
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
+ C CGK + +SS L H R HTGE+P+ C CG+ FS++ L H+R HT
Sbjct: 15 YGCV--ECGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGLINHQRIHTSGPS 70
Query: 324 FG 325
G
Sbjct: 71 SG 72
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 74.2 bits (183), Expect = 2e-17
Identities = 24/31 (77%), Positives = 28/31 (90%)
Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
RPF+C W+ CG+RF+RSDEL RHKRTHTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 47.6 bits (114), Expect = 5e-08
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGER 292
F C + CGK + +S L+ H RTHTGE+
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 72.2 bits (178), Expect = 1e-16
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ +GERP+ C CG+ F R L H + H EK G S
Sbjct: 3 SGSSGSGERPYGC--NECGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 52.9 bits (128), Expect = 9e-10
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ CN CGKN+ + SHL H++ H E+
Sbjct: 13 YGCN--ECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 48.7 bits (117), Expect = 2e-08
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ +GE+ +GC+ C + F R HL +H+KRH
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHF 36
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 71.6 bits (176), Expect = 1e-16
Identities = 19/33 (57%), Positives = 20/33 (60%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
R TG K F C C+R F RSDHLA H KRH
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 62.0 bits (151), Expect = 4e-13
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTH 318
R TG +PF C C R FSRSD L+ H++ H
Sbjct: 2 STRGSTGIKPFQC--PDCDRSFSRSDHLALHRKRH 34
Score = 35.4 bits (82), Expect = 0.001
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTH 288
F+C +C +++ +S HL H + H
Sbjct: 12 FQC--PDCDRSFSRSDHLALHRKRH 34
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 70.1 bits (172), Expect = 5e-16
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 257 NDPRRRIFECNYENCGKNYFKSSHLKAHMRTHTGER 292
+ +++ C+ + CGK Y K+SHL+AH+R HTGER
Sbjct: 2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 31.2 bits (71), Expect = 0.038
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 319 TGEKKFGCSI--CNRRFMRSDHLAKHVKRHS 347
+K+ C I C + + ++ HL H++ H+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHT 34
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 69.9 bits (172), Expect = 8e-16
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+ + C+ CG+ FSR+ L +H+R H+GEK G S
Sbjct: 2 SSGSSGTGEKLYNCK--ECGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 47.5 bits (114), Expect = 7e-08
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ C CGK++ ++ L H R H+GE+P
Sbjct: 13 YNCK--ECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 45.2 bits (108), Expect = 4e-07
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ TGEK + C C + F R+ L KH + HS
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS 36
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 69.1 bits (170), Expect = 2e-15
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGER + C + CG+ F+R L H+R HTGEK G S
Sbjct: 3 SGSSGTGERHYEC--SECGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 4e-08
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+EC+ CGK + + S L H R HTGE+P
Sbjct: 13 YECS--ECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 2e-07
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGE+ + CS C + F R L H + H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 68.8 bits (169), Expect = 2e-15
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+PF C+ CG FS S L +H R+H G S
Sbjct: 2 SSGSSGTGEKPFQCK--ECGMNFSWSCSLFKHLRSHERTDPSGPS 44
Score = 48.4 bits (116), Expect = 4e-08
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
F+C CG N+ S L H+R+H P
Sbjct: 13 FQCK--ECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 45.3 bits (108), Expect = 4e-07
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ TGEK F C C F S L KH++ H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHE 36
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 70.4 bits (172), Expect = 2e-15
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 266 CNYENCGKNYFKSSHLKAHM-RTHTGERP---FLCQWTGCGRR---FSRSDELSRHKRTH 318
++C + + L H+ H G +C W C R F +L H R H
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVH 85
Query: 319 TGEKKFGCS 327
TGEK S
Sbjct: 86 TGEKSGPSS 94
Score = 52.7 bits (126), Expect = 4e-09
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 256 TNDPRRRIFECNYENC---GKNYFKSSHLKAHMRTHTGERPFLC 296
P + C +E C GK++ L H+R HTGE+
Sbjct: 50 VGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 51.5 bits (123), Expect = 1e-08
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 11/72 (15%)
Query: 287 THTGERPFLCQWTGCGRRFSRSDELSRH-KRTHTGEKKF--------GCSICNRRFMRSD 337
+ + C R FS EL H H G + C + F
Sbjct: 19 IDEAQLSRPKK--SCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKY 76
Query: 338 HLAKHVKRHSKD 349
L H++ H+ +
Sbjct: 77 KLVNHIRVHTGE 88
Score = 33.8 bits (77), Expect = 0.018
Identities = 8/56 (14%), Positives = 13/56 (23%), Gaps = 18/56 (32%)
Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
++ C+W + C+R F L HV
Sbjct: 11 KQELSCKWI------------------DEAQLSRPKKSCDRTFSTMHELVTHVTME 48
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 2e-15
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P++C CG+ F + L+RH+R HTGEK G S
Sbjct: 2 SSGSSGTGEKPYIC--NECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 8e-09
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ CN CGK++ + SHL H R HTGE+P
Sbjct: 13 YICN--ECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 46.4 bits (111), Expect = 2e-07
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C+ C + F++ HL +H + H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 2e-15
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE+P+ C CG+ F S L++H R HT E G S
Sbjct: 3 SGSSGTGEKPYSC--NVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 49.8 bits (120), Expect = 9e-09
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ CN CGK + S+HL H+R HT E
Sbjct: 13 YSCN--VCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 46.4 bits (111), Expect = 2e-07
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C++C + F+ S HL +H++ H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.7 bits (169), Expect = 2e-15
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+PF C CG+ F L+RH HT EK G S
Sbjct: 2 SSGSSGTGEKPFKC--DICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 49.0 bits (118), Expect = 2e-08
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
F+C+ CGK++ S L H HT E+P
Sbjct: 13 FKCD--ICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 46.7 bits (112), Expect = 1e-07
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK F C IC + F L +H H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 2e-15
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE P+ C CG+ FSR +L H+RTH GEK G S
Sbjct: 3 SGSSGTGENPYEC--HECGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+EC+ CGK + + L +H RTH GE+P
Sbjct: 13 YECH--ECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGE + C C + F R L H + H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 3e-15
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + GE+P+ C + CG+ FS L H RTH+GEK G S
Sbjct: 2 SSGSSGAGEKPYGC--SECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 50.2 bits (121), Expect = 7e-09
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ C+ CGK + S+L HMRTH+GE+P
Sbjct: 13 YGCS--ECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 46.8 bits (112), Expect = 1e-07
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ GEK +GCS C + F +L H++ HS
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS 36
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 68.3 bits (168), Expect = 3e-15
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TG+RP+ C CG+ F L H+R+HTGEK G S
Sbjct: 3 SGSSGTGQRPYEC--IECGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 2e-08
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+EC CGK + S L H R+HTGE+P
Sbjct: 13 YECI--ECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TG++ + C C + F L H + H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 68.3 bits (168), Expect = 3e-15
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + +GE+PF C+ CG+ F + + H+R+H+GEK G S
Sbjct: 2 SSGSSGSGEKPFKCE--ECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 49.5 bits (119), Expect = 1e-08
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCG 302
F+C CGK ++ +S +H R+H+GE+P G
Sbjct: 13 FKCE--ECGKGFYTNSQCYSHQRSHSGEKPSGPS---SG 46
Score = 44.9 bits (107), Expect = 6e-07
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ +GEK F C C + F + H + HS
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS 36
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 68.3 bits (168), Expect = 3e-15
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+PF C CG+ FSR L+ H + HTGEK G S
Sbjct: 2 SSGSSGTGEKPFKC--VECGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 3e-08
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
F+C CGK + + S L H + HTGE+P
Sbjct: 13 FKCV--ECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK F C C + F R L H K H
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 3e-15
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+PF C CG+ FS L++H+R HTGEK G S
Sbjct: 2 SSGSSGTGEKPFDC--IDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
F+C +CGK + L H R HTGE+P
Sbjct: 13 FDCI--DCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK F C C + F L +H + H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 68.3 bits (168), Expect = 3e-15
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+PF C + C + F+ L H+RTHTGEK G S
Sbjct: 2 SSGSSGTGEKPFEC--SECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 49.0 bits (118), Expect = 2e-08
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
FEC+ C K + S+L H RTHTGE+P
Sbjct: 13 FECS--ECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 45.9 bits (110), Expect = 2e-07
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK F CS C + F +L H + H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 3e-15
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE PF+C + CG+ F+ L H++ HTGE+ G S
Sbjct: 2 SSGSSGTGENPFIC--SECGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 48.3 bits (116), Expect = 4e-08
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
F C+ CGK + ++L H + HTGERP
Sbjct: 13 FICS--ECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 44.4 bits (106), Expect = 9e-07
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGE F CS C + F +L H K H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.9 bits (167), Expect = 4e-15
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + +GE+P+ C CG+ + R +L H+R HTGEK G S
Sbjct: 2 SSGSSGSGEKPYKC--VECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 47.9 bits (115), Expect = 4e-08
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++C CGK Y + L H R HTGE+
Sbjct: 13 YKCV--ECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ +GEK + C C + + R L H + H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.5 bits (166), Expect = 5e-15
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P++C CG+ F+ L +H++ HT +K G S
Sbjct: 2 SSGSSGTGEKPYIC--AECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 47.1 bits (113), Expect = 1e-07
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ C CGK + S+L H + HT ++P
Sbjct: 13 YICA--ECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 43.7 bits (104), Expect = 2e-06
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C+ C + F +L KH K H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 67.5 bits (166), Expect = 5e-15
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE+PF C CG+ FS S +L+ H+R HTGEK G S
Sbjct: 3 SGSSGTGEKPFECA--ECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 49.0 bits (118), Expect = 2e-08
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
FEC CGK++ SS L H R HTGE+P
Sbjct: 13 FECA--ECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 1e-07
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK F C+ C + F S LA H + H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.6 bits (166), Expect = 5e-15
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + +GE+P+ C CG+ FS+ LS H+RTHTGEK G S
Sbjct: 2 SSGSSGSGEKPYGC--NECGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 50.6 bits (122), Expect = 5e-09
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ CN CGK + + S L AH RTHTGE+P
Sbjct: 13 YGCN--ECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 4e-07
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ +GEK +GC+ C + F + L+ H + H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 67.8 bits (165), Expect = 5e-15
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
+ C E CG K S LK H+RTHT RP+ C C F L++H ++ KK
Sbjct: 2 YIC--EECGIRXKKPSMLKKHIRTHTDVRPYHCT--YCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 54.7 bits (131), Expect = 2e-10
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 301 CGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
CG R + L +H RTHT + + C+ CN F +L KH+K +
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 25.1 bits (54), Expect = 9.5
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 323 KFGCSICNRRFMRSDHLAKHVKRHSKD 349
K+ C C R + L KH++ H+
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDV 27
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.5 bits (166), Expect = 5e-15
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ +GE+P++C CG+ F S EL RH+R HTGEK G S
Sbjct: 3 SGSSGSGEKPYVCD--YCGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 4e-08
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ C+Y CGK + S+ L H R HTGE+P
Sbjct: 13 YVCDY--CGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ +GEK + C C + F S L +H + H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 67.2 bits (165), Expect = 8e-15
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ +GE+PF C+ CG+RF+++ L H+R HTGEK G S
Sbjct: 3 SGSSGSGEKPFQCE--ECGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 49.9 bits (120), Expect = 9e-09
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
F+C CGK + ++SHL +H R HTGE+P
Sbjct: 13 FQCE--ECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 47.2 bits (113), Expect = 9e-08
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ +GEK F C C +RF ++ HL H + H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 67.1 bits (165), Expect = 8e-15
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + + E+P+ C+ CG+ ++R L H+R H GEK G S
Sbjct: 2 SSGSSGSVEKPYKCE--DCGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 46.7 bits (112), Expect = 1e-07
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++C +CGK Y + +L H R H GE+
Sbjct: 13 YKCE--DCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 43.6 bits (104), Expect = 2e-06
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ + EK + C C + + R +L H + H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 9e-15
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ +GE+PF C+ CG+RF+++ +L H+R HTGEK G S
Sbjct: 3 SGSSGSGEKPFKCE--ECGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 4e-08
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
F+C CGK + ++S L +H R HTGE+P
Sbjct: 13 FKCE--ECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 8e-08
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ +GEK F C C +RF ++ L H + H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 66.8 bits (164), Expect = 9e-15
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TG +P+ C + C + FS +L H+R+HTG K G S
Sbjct: 2 SSGSSGTGVKPYGC--SQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 48.7 bits (117), Expect = 3e-08
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ C+ C K + S L H R+HTG +P
Sbjct: 13 YGCS--QCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 46.4 bits (111), Expect = 2e-07
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TG K +GCS C + F L H + H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C + CG+ F + +L H+R HTGE G S
Sbjct: 2 SSGSSGTGEKPYEC--SDCGKSFIKKSQLHVHQRIHTGENPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+EC+ +CGK++ K S L H R HTGE P
Sbjct: 13 YECS--DCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + CS C + F++ L H + H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGERP C CG+ F +S L +H+R HTGEK G S
Sbjct: 3 SGSSGTGERPHKCN--ECGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 49.4 bits (119), Expect = 2e-08
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+CN CGK++ +S+HL H R HTGE+P
Sbjct: 13 HKCN--ECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKH 342
+ TGE+ C+ C + F++S HL +H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE+P+ C + CG+ F+R L H+++HTGE+ G S
Sbjct: 3 SGSSGTGEKPYKC--SDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 48.7 bits (117), Expect = 3e-08
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++C+ +CGK + + S L H ++HTGER
Sbjct: 13 YKCS--DCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + CS C + F R L H + H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C+ C + F++ L++H++THTGEK G S
Sbjct: 2 SSGSSGTGEKPYECK--VCSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 50.2 bits (121), Expect = 6e-09
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+EC C K + + +HL H +THTGE+P
Sbjct: 13 YECK--VCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 48.3 bits (116), Expect = 4e-08
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C +C++ F + HLA+H K H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P C T CG+ F +L H+RTH +K G S
Sbjct: 2 SSGSSGTGEKPCKC--TECGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 49.1 bits (118), Expect = 2e-08
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+C CGK + S L H RTH ++
Sbjct: 13 CKCT--ECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 42.9 bits (102), Expect = 2e-06
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK C+ C + F L H + H
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTH 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + +GE+PF C+ CG+ F ++ L+ H R HTGEK G S
Sbjct: 2 SSGSSGSGEKPFKCK--ECGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 49.4 bits (119), Expect = 1e-08
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
F+C CGK + ++ HL +H+R HTGE+P
Sbjct: 13 FKCK--ECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 8e-08
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ +GEK F C C + F ++ HLA H++ H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.8 bits (164), Expect = 1e-14
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TG + F C T CG+ F+R LS H++ HTGEK G S
Sbjct: 2 SSGSSGTGGKHFEC--TECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 2e-08
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
FEC CGK + + S L H + HTGE+P
Sbjct: 13 FECT--ECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 4e-07
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 312 SRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TG K F C+ C + F R L+ H K H
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 1e-14
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE+PF C CG+ +++ L++H+R HTGEK G S
Sbjct: 3 SGSSGTGEKPFKC--GECGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 2e-08
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
F+C CGK+Y + HL H R HTGE+P
Sbjct: 13 FKCG--ECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 47.1 bits (113), Expect = 1e-07
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK F C C + + + HL +H + H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 1e-14
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C CG+ F+++ L+RH+R HTG K G S
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 49.4 bits (119), Expect = 1e-08
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++CN CGK + ++SHL H R HTG +P
Sbjct: 13 YKCN--ECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 45.2 bits (108), Expect = 4e-07
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C+ C + F ++ HLA+H + H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 66.4 bits (163), Expect = 1e-14
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C+ CG+ F +L H HTGEK G S
Sbjct: 2 SSGSSGTGEKPYKCE--ECGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 46.8 bits (112), Expect = 1e-07
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++C CGK + L H HTGE+P
Sbjct: 13 YKCE--ECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C C + F+ L H H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 1e-14
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGERP++C T CG+ F+ L +H++ HTGEK G S
Sbjct: 2 SSGSSGTGERPYIC--TVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 5e-08
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQ 297
+ C CGK + S+L H + HTGE+P
Sbjct: 13 YICT--VCGKAFTDRSNLIKHQKIHTGEKPSGPS 44
Score = 45.2 bits (108), Expect = 5e-07
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGE+ + C++C + F +L KH K H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.4 bits (163), Expect = 2e-14
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ GE+ + C CG+ FS+S L H+R HTGEK G S
Sbjct: 3 SGSSGMGEKCYKCD--VCGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 49.1 bits (118), Expect = 2e-08
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++C+ CGK + +SSHL+ H R HTGE+P
Sbjct: 13 YKCD--VCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 3e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ GEK + C +C + F +S HL H + H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 2e-14
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGER + C + CG+ F + LS H+R H GEK G S
Sbjct: 3 SGSSGTGERHYEC--SECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 47.9 bits (115), Expect = 4e-08
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+EC+ CGK + + S L H R H GE+P
Sbjct: 13 YECS--ECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGE+ + CS C + F++ L+ H + H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 66.0 bits (162), Expect = 2e-14
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE+P+ C+ CG+ FS++ L +H+R HTGEK G S
Sbjct: 3 SGSSGTGEKPYECK--ECGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 3e-08
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+EC CGK + +++HL H R HTGE+P
Sbjct: 13 YECK--ECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 3e-07
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C C + F ++ HL +H + H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 2e-14
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ +GE+P+ C + CG+ F R L+ H+R HTG + G S
Sbjct: 3 SGSSGSGEKPYKC--SECGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 48.3 bits (116), Expect = 4e-08
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++C+ CGK + + +HL H R HTG RP
Sbjct: 13 YKCS--ECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 47.1 bits (113), Expect = 9e-08
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ +GEK + CS C + F R HL +H + H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 2e-14
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C CG+ F+++ L+RH+ HTGEK G S
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 49.0 bits (118), Expect = 2e-08
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++CN CGK + ++SHL H HTGE+P
Sbjct: 13 YKCN--ECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 4e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C+ C + F ++ HLA+H H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 2e-14
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C CG+ F+++ L RH+ HTGEK G S
Sbjct: 2 SSGSSGTGEKPYKCN--ECGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 48.6 bits (117), Expect = 3e-08
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++CN CGK + ++SHL H HTGE+P
Sbjct: 13 YKCN--ECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 46.7 bits (112), Expect = 1e-07
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C+ C + F ++ HL +H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 66.0 bits (162), Expect = 2e-14
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C CG+ F R+ L+RH+ HTGEK G S
Sbjct: 2 SSGSSGTGEKPYKC--HECGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 48.6 bits (117), Expect = 3e-08
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++C+ CGK + ++SHL H HTGE+P
Sbjct: 13 YKCH--ECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 47.5 bits (114), Expect = 7e-08
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C C + F R+ HLA+H H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 66.0 bits (162), Expect = 2e-14
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
+ GE+P+ C+ CG RF L H R HTG
Sbjct: 1 GSSGSSGGEKPYPCE--ICGTRFRHLQTLKSHLRIHTGSG 38
Score = 51.0 bits (123), Expect = 3e-09
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPF 294
+ C CG + LK+H+R HTG P
Sbjct: 12 YPCEI--CGTRFRHLQTLKSHLRIHTGSGPS 40
Score = 47.9 bits (115), Expect = 5e-08
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ GEK + C IC RF L H++ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 2e-14
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C CG+ F++ L++H+R HTGEK G S
Sbjct: 2 SSGSSGTGEKPYRC--GECGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 8e-08
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ C CGK + + ++L H R HTGE+P
Sbjct: 13 YRCG--ECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 6e-07
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C C + F + +L +H + H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 65.6 bits (161), Expect = 2e-14
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGC 326
+ + TG +P++C CG+ F L H RTHTGE
Sbjct: 2 SSGSSGTGMKPYVC--NECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 50.6 bits (122), Expect = 5e-09
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ CN CGK + S+L H RTHTGE
Sbjct: 13 YVCN--ECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 44.4 bits (106), Expect = 8e-07
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TG K + C+ C + F +L H + H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 2e-14
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C+ CG+ F +L H+R HTGEK G S
Sbjct: 2 SSGSSGTGEKPYNCE--ECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 46.8 bits (112), Expect = 1e-07
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ C CGK + S L+ H R HTGE+P
Sbjct: 13 YNCE--ECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 5e-07
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C C + F+ L +H + H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 65.6 bits (161), Expect = 2e-14
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
+ GE+P+ C+ CG RF + L H HTG
Sbjct: 2 SSGSSGGEKPYKCE--TCGARFVQVAHLRAHVLIHTGSG 38
Score = 51.8 bits (125), Expect = 2e-09
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPF 294
++C E CG + + +HL+AH+ HTG P
Sbjct: 12 YKC--ETCGARFVQVAHLRAHVLIHTGSGPS 40
Score = 49.4 bits (119), Expect = 1e-08
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ GEK + C C RF++ HL HV H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 65.6 bits (161), Expect = 3e-14
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE+ + C CG+ FSR+ +LS+H++ HTGEK G S
Sbjct: 3 SGSSGTGEKRYKCN--ECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 47.5 bits (114), Expect = 7e-08
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++CN CGK + ++S L H + HTGE+P
Sbjct: 13 YKCN--ECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 45.6 bits (109), Expect = 3e-07
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK++ C+ C + F R+ L++H K H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 65.6 bits (161), Expect = 3e-14
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TG++PF C T CG+ F L H+R HTGEK S
Sbjct: 2 SSGSSGTGQKPFEC--THCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 49.5 bits (119), Expect = 1e-08
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
FEC +CGK++ +L H R HTGE+
Sbjct: 13 FECT--HCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TG+K F C+ C + F +L H + H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 3e-14
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE+P+ C + CG+ FS LS H+R H+G+K G S
Sbjct: 3 SGSSGTGEKPYEC--SVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 47.9 bits (115), Expect = 6e-08
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+EC+ CGK + L H R H+G++P
Sbjct: 13 YECS--VCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ TGEK + CS+C + F L+ H + HS
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHS 36
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 65.6 bits (161), Expect = 3e-14
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ GER C + CG+ F ++ +H+R HTGEK G S
Sbjct: 3 SGSSGHGERGHRC--SDCGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 44.8 bits (107), Expect = 5e-07
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
C+ +CGK + ++S+ H R HTGE+P
Sbjct: 13 HRCS--DCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ GE+ CS C + F+++ + +H + H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 3e-14
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + +GE+P+ C CG+ F+++ L+ H R HTGEK G S
Sbjct: 2 SSGSSGSGEKPYKCN--ECGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 4e-08
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++CN CGK + ++SHL H R HTGE+P
Sbjct: 13 YKCN--ECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 46.3 bits (111), Expect = 2e-07
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ +GEK + C+ C + F ++ HL H + H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 3e-14
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C CG+ F+ L H++ HTGEK G S
Sbjct: 2 SSGSSGTGEKPYRC--AECGKAFTDRSNLFTHQKIHTGEKPSGPS 44
Score = 46.3 bits (111), Expect = 2e-07
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ C CGK + S+L H + HTGE+P
Sbjct: 13 YRCA--ECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C+ C + F +L H K H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 65.6 bits (161), Expect = 3e-14
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGC 326
+ + TGE+P+ C C + F+ L H+RTHTGE
Sbjct: 2 SSGSSGTGEKPYEC--NECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 50.6 bits (122), Expect = 6e-09
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ECN C K + S+L H RTHTGE
Sbjct: 13 YECN--ECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 43.6 bits (104), Expect = 2e-06
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C+ C + F +L H + H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 3e-14
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C + CG+ F+ L H++ HTGE+ G S
Sbjct: 2 SSGSSGTGEKPYKC--SDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 47.5 bits (114), Expect = 7e-08
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++C+ +CGK++ S L+ H + HTGER
Sbjct: 13 YKCS--DCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 42.5 bits (101), Expect = 4e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + CS C + F L H K H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 3e-14
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE+P+ C CG+ FS++ +L+RH+R HTGEK G S
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 5e-08
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++CN CGK + ++S L H R HTGE+P
Sbjct: 13 YKCN--ECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 6e-07
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C+ C + F ++ LA+H + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.6 bits (161), Expect = 3e-14
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TG++P+ C CG+ F+++ L+RH+ HTGEK G S
Sbjct: 2 SSGSSGTGKKPYKCN--ECGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 48.7 bits (117), Expect = 3e-08
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++CN CGK + ++SHL H HTGE+P
Sbjct: 13 YKCN--ECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 44.8 bits (107), Expect = 5e-07
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TG+K + C+ C + F ++ HLA+H H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.3 bits (160), Expect = 3e-14
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + GE+P+ C + CG+ FS S L++H THT EK G S
Sbjct: 2 SSGSSGEGEKPYQC--SECGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 47.2 bits (113), Expect = 1e-07
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++C+ CGK++ S L H THT E+P
Sbjct: 13 YQCS--ECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ GEK + CS C + F S L +H H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 65.3 bits (160), Expect = 3e-14
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C+ CG+ F + L +H+R H+GEK G S
Sbjct: 2 SSGSSGTGEKPYNCKE--CGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 47.2 bits (113), Expect = 1e-07
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ C CGK++ +S L H R H+GE+P
Sbjct: 13 YNCK--ECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ TGEK + C C + F + L KH + HS
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHS 36
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 3e-14
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C C + F L+ H+R HTGEK G S
Sbjct: 2 SSGSSGTGEKPYKCDV--CHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 46.7 bits (112), Expect = 1e-07
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQ 297
++C+ C K++ S L H R HTGE+P
Sbjct: 13 YKCD--VCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 42.1 bits (100), Expect = 5e-06
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C +C++ F L H + H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.3 bits (160), Expect = 3e-14
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE+P C+ CG+ FS + +L H+R HTGE G S
Sbjct: 3 SGSSGTGEKPHECR--ECGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 47.5 bits (114), Expect = 7e-08
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
EC CGK++ +S L H R HTGE P
Sbjct: 13 HECR--ECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 43.7 bits (104), Expect = 1e-06
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK C C + F + L H + H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 3e-14
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE+P+ C C + FS L++H+R H+GEK G S
Sbjct: 3 SGSSGTGEKPYEC--DVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 47.1 bits (113), Expect = 8e-08
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+EC+ C K + + L H R H+GE+P
Sbjct: 13 YECD--VCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ TGEK + C +C + F L +H + HS
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHS 36
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.3 bits (160), Expect = 4e-14
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE+P+ C + CG+ F++ +L H++ HTGEK G S
Sbjct: 3 SGSSGTGEKPYEC--SICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+EC+ CGK++ K S L H + HTGE+P
Sbjct: 13 YECS--ICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 45.2 bits (108), Expect = 4e-07
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + CSIC + F + L H + H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 4e-14
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C+ CG+ ++ L H++ HTGE+ G S
Sbjct: 2 SSGSSGTGEKPYKCE--KCGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 47.1 bits (113), Expect = 9e-08
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++C CGK Y +L H + HTGERP
Sbjct: 13 YKCE--KCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C C + + +L H K H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 4e-14
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + G++ F C C + F++S L+ H+R HTGEK G S
Sbjct: 2 SSGSSGAGKKLFKC--NECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 5e-08
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
F+CN C K + +SS L H R HTGE+P
Sbjct: 13 FKCN--ECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ G+K F C+ C + F +S L H + H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 65.2 bits (160), Expect = 4e-14
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TG +P+ C CG+ FS++ +L+RH+R HTGEK G S
Sbjct: 2 SSGSSGTGGKPYQCN--ECGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 5e-08
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++CN CGK + ++S L H R HTGE+P
Sbjct: 13 YQCN--ECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TG K + C+ C + F ++ LA+H + H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 4e-14
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TG +P++C CG+ FS L+ H+ HTGEK G S
Sbjct: 2 SSGSSGTGVKPYMCN--ECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ CN CGK + S L H HTGE+P
Sbjct: 13 YMCN--ECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TG K + C+ C + F L H H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 4e-14
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C CG+ F + ++H+R HTG++ G S
Sbjct: 2 SSGSSGTGEKPYKC--MECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 46.8 bits (112), Expect = 1e-07
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++C CGK + +S H R HTG+RP
Sbjct: 13 YKCM--ECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 43.3 bits (103), Expect = 2e-06
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C C + F + +H + H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 5e-14
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + +G++P+ C+ C + F + L++HKR HTGE+ G S
Sbjct: 2 SSGSSGSGKKPYECK--ECRKTFIQIGHLNQHKRVHTGERSSGPS 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+EC C K + + HL H R HTGER
Sbjct: 13 YECK--ECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 44.5 bits (106), Expect = 8e-07
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ +G+K + C C + F++ HL +H + H+
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVHT 36
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 5e-14
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE+P+ C CG+ F + LSRH+R HTGEK G S
Sbjct: 3 SGSSGTGEKPYKC--NECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 47.9 bits (115), Expect = 4e-08
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++CN CGK + +S+L H R HTGE+P
Sbjct: 13 YKCN--ECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 44.0 bits (105), Expect = 1e-06
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C+ C + F + +L++H + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.8 bits (159), Expect = 5e-14
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE+P+ CQ CG+ F S L +H H+GE+ G S
Sbjct: 3 SGSSGTGEKPYKCQ--VCGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 47.1 bits (113), Expect = 8e-08
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++C CGK + SSHL H H+GERP
Sbjct: 13 YKCQ--VCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ TGEK + C +C + F S HL +H HS
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVHS 36
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 5e-14
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ +GERPF C CG+ F R L+ H R H+ EK G S
Sbjct: 3 SGSSGSGERPFKCN--ECGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 49.8 bits (120), Expect = 1e-08
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
F+CN CGK + + SHL H+R H+ E+
Sbjct: 13 FKCN--ECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ +GE+ F C+ C + F R HLA H++ HS
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLHS 36
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 64.9 bits (159), Expect = 5e-14
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + + C CGR F+ L++H+R HTGEK G S
Sbjct: 3 SGSSGSSTKSHQC--HECGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 47.2 bits (113), Expect = 1e-07
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+C+ CG+ + SHL H R HTGE+P
Sbjct: 13 HQCH--ECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 44.1 bits (105), Expect = 1e-06
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ + K C C R F HL +H + H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.9 bits (159), Expect = 5e-14
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE+P+ C CG+ F L+ H+ TH+GEK G S
Sbjct: 3 SGSSGTGEKPYKCN--ECGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++CN CGK + S L H TH+GE+P
Sbjct: 13 YKCN--ECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C+ C + F LA H H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 6e-14
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C CG+ F L+ H+ HTGEK G S
Sbjct: 2 SSGSSGTGEKPYKC--NECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++CN CGK + S+L H HTGE+P
Sbjct: 13 YKCN--ECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C+ C + F +L H H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.5 bits (158), Expect = 6e-14
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + TGE+P+ C CG+ F+++ L+ H+R HTG K G S
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 48.3 bits (116), Expect = 3e-08
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++CN CGK + ++SHL H R HTG +P
Sbjct: 13 YKCN--ECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 46.0 bits (110), Expect = 2e-07
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C+ C + F ++ HLA H + H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 64.1 bits (157), Expect = 8e-14
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ TGE+P+ C CG+ FS L+ H+ HTG+K G S
Sbjct: 3 SGSSGTGEKPYEC--NQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 47.1 bits (113), Expect = 8e-08
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ECN CGK + S L H HTG++P
Sbjct: 13 YECN--QCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ TGEK + C+ C + F L H H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 64.1 bits (157), Expect = 1e-13
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGC 326
+ + +GE+P+ C CG+ F L H+RTH G
Sbjct: 2 SSGSSGSGEKPYEC--NECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 48.3 bits (116), Expect = 3e-08
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ECN CGK + S L H RTH G
Sbjct: 13 YECN--ECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 44.8 bits (107), Expect = 6e-07
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ +GEK + C+ C + F+ L H + H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 63.7 bits (156), Expect = 1e-13
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + GE+ + C+ C FS++ L H+ H GEK G S
Sbjct: 2 SSGSSGMGEKTWKCR--ECDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 45.6 bits (109), Expect = 3e-07
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++C C + ++S L+ H H GE+P
Sbjct: 13 WKCR--ECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 42.1 bits (100), Expect = 6e-06
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ GEK + C C+ F ++ L H H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 63.7 bits (156), Expect = 1e-13
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKR-THTGEKKFGCS 327
+ + TG++P+ C CG+ F ++ L RH R HTGEK G S
Sbjct: 2 SSGSSGTGKKPYEC--IECGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 44.1 bits (105), Expect = 1e-06
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 264 FECNYENCGKNYFKSSHLKAHMR-THTGERPFLC 296
+EC CGK + +++ L H R HTGE+P
Sbjct: 13 YECI--ECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 44.1 bits (105), Expect = 1e-06
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKH 342
+ TG+K + C C + F+++ L +H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 63.3 bits (155), Expect = 2e-13
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGC 326
+ + TGE P+ C CG+ FSR D+L H++TH+G+
Sbjct: 2 SSGSSGTGENPYEC--CECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 47.1 bits (113), Expect = 8e-08
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+EC CGK + + L +H +TH+G+
Sbjct: 13 YECC--ECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 42.9 bits (102), Expect = 3e-06
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ TGE + C C + F R D L H K HS
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHS 36
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 63.0 bits (154), Expect = 2e-13
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
+ GE+P+ C CG+ FS+ L H R HTG
Sbjct: 1 GSSGSSGGEKPYRCD--QCGKAFSQKGSLIVHIRVHTGSG 38
Score = 47.2 bits (113), Expect = 9e-08
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPF 294
+ C+ CGK + + L H+R HTG P
Sbjct: 12 YRCD--QCGKAFSQKGSLIVHIRVHTGSGPS 40
Score = 43.7 bits (104), Expect = 1e-06
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ GEK + C C + F + L H++ H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVH 34
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 62.6 bits (153), Expect = 3e-13
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ + G P+ C C + FS L H+R HT EK G S
Sbjct: 2 SSGSSGAGVNPYKCSQ--CEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 46.4 bits (111), Expect = 2e-07
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++C+ C K++ L H R HT E+P
Sbjct: 13 YKCS--QCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 42.1 bits (100), Expect = 5e-06
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+ G + CS C + F L H + H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 62.6 bits (153), Expect = 3e-13
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ +GE+ C CG+ F L H+R H GEK G S
Sbjct: 3 SGSSGSGEKSHTCD--ECGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 43.3 bits (103), Expect = 2e-06
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
C+ CGKN+ S L+ H R H GE+
Sbjct: 13 HTCD--ECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 36.4 bits (85), Expect = 5e-04
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ +GEK C C + F L H + H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHM 36
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 62.6 bits (153), Expect = 4e-13
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRH-KRTHTGEKKFGCSICNRRF 333
+ + + +P++CQ CG+ FSR D L+ H K+ HT E+ C +
Sbjct: 2 SSGSSGSVGKPYICQ--SCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 52.2 bits (126), Expect = 2e-09
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 264 FECNYENCGKNYFKSSHLKAHM-RTHTGERPFLCQWTGCGRRFS 306
+ C ++CGK + + HL H+ + HT ERP CQ S
Sbjct: 13 YIC--QSCGKGFSRPDHLNGHIKQVHTSERPHKCQ--VWVSGPS 52
Score = 44.5 bits (106), Expect = 9e-07
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKR-HS 347
+ + K + C C + F R DHL H+K+ H+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVHT 37
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 62.1 bits (152), Expect = 4e-13
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 286 RTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGC 326
+GE P+ C + CG+ F+R D+L H+RTH GE
Sbjct: 3 SGSSGENPYEC--SECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 48.7 bits (117), Expect = 3e-08
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+EC+ CGK + + L +H RTH GE
Sbjct: 11 YECS--ECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 40.2 bits (95), Expect = 2e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 315 KRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+GE + CS C + F R D L H + H+
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISHQRTHA 34
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 61.8 bits (151), Expect = 6e-13
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 286 RTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+GE+PF C + C + FS L H++TH EK G S
Sbjct: 3 SGSSGEKPFGC--SCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 49.1 bits (118), Expect = 2e-08
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
F C+ C K + S+L H +TH E+P
Sbjct: 11 FGCS--CCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 38.7 bits (91), Expect = 8e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 315 KRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+GEK FGCS C + F +L H + H+
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVHQQTHA 34
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 60.7 bits (148), Expect = 2e-12
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 284 HMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGC 326
+ T + + C CG+ F+R L+RH++ HT +
Sbjct: 3 SGSSGTDSKSYNCN--ECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 47.2 bits (113), Expect = 9e-08
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ T K + C+ C + F R HL +H K H+
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 40.6 bits (96), Expect = 2e-05
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ CN CGK + + HL H + HT +
Sbjct: 13 YNCN--ECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 56.9 bits (138), Expect = 3e-11
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 286 RTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGC 326
+GE+P+ C C FS ++ L +H++ HT +
Sbjct: 3 SGSSGEKPYSC--AECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 43.1 bits (102), Expect = 2e-06
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 315 KRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+GEK + C+ C F ++ L +H K H+
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 40.4 bits (95), Expect = 2e-05
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
+ C C + + ++ L H + HT +
Sbjct: 11 YSCA--ECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 58.2 bits (140), Expect = 7e-11
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 3/81 (3%)
Query: 277 KSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRS 336
S K + TG F C+ C + EL+ H TG + + +
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKD--CSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKR 59
Query: 337 DHLAKHVKRHSKDGAITPSNI 357
+ +G +
Sbjct: 60 WSKPRKRSLLEMEGKEDAQKV 80
Score = 51.7 bits (123), Expect = 1e-08
Identities = 16/89 (17%), Positives = 24/89 (26%), Gaps = 5/89 (5%)
Query: 262 RIFECNYENCGKNYFKSSHLKAHMRT--HTGERPFLCQWTG-CGRRFSRSDELSRHKRTH 318
F C ++C Y L HM H + R L +
Sbjct: 18 SKFRC--KDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKE 75
Query: 319 TGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+K C C F L+ H+ +
Sbjct: 76 DAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 41.3 bits (96), Expect = 6e-05
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 306 SRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVK 344
S + TG KF C C+ + L H+
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMN 40
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 54.2 bits (131), Expect = 3e-10
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
+ GE P+LC CG+ F++ L+ H+R+ +
Sbjct: 1 GSSGSSGGETPYLCG--QCGKSFTQRGSLAVHQRSCSQSG 38
Score = 45.0 bits (107), Expect = 5e-07
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPF 294
+ C CGK++ + L H R+ + P
Sbjct: 12 YLCG--QCGKSFTQRGSLAVHQRSCSQSGPS 40
Score = 36.9 bits (86), Expect = 4e-04
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ GE + C C + F + LA H + S
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVHQRSCS 35
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 53.4 bits (128), Expect = 4e-10
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 323 KFGCSICNRRFMRSDHLAKHVKRHSKDG 350
KF C C +RFMRSDHL+KH+ H G
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLG 29
Score = 37.2 bits (86), Expect = 2e-04
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 294 FLCQWTGCGRRFSRSDELSRHKRTHTGEKK 323
F C C +RF RSD LS+H H +
Sbjct: 3 FACP--ECPKRFMRSDHLSKHITLHELLGE 30
Score = 28.3 bits (63), Expect = 0.30
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
F C C K + +S HL H+ H
Sbjct: 3 FACP--ECPKRFMRSDHLSKHITLHELLGE 30
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 53.0 bits (128), Expect = 8e-10
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 286 RTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
+G+R + CQ CG+ F + L+ H+R HTG
Sbjct: 3 SGSSGQRVYECQ--ECGKSFRQKGSLTLHERIHTGSG 37
Score = 44.1 bits (105), Expect = 9e-07
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERPF 294
+EC CGK++ + L H R HTG P
Sbjct: 11 YECQ--ECGKSFRQKGSLTLHERIHTGSGPS 39
Score = 34.9 bits (81), Expect = 0.002
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 315 KRTHTGEKKFGCSICNRRFMRSDHLAKHVKRH 346
+G++ + C C + F + L H + H
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLHERIH 33
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 52.2 bits (125), Expect = 1e-09
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 323 KFGCSICNRRFMRSDHLAKHVKRHSKD 349
KF C C +RFMRSDHL H+ H
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENK 28
Score = 36.0 bits (83), Expect = 5e-04
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 294 FLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
F C C +RF RSD L+ H H +K
Sbjct: 3 FACP--ECPKRFMRSDHLTLHILLHENKK 29
Score = 28.7 bits (64), Expect = 0.25
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGER 292
F C C K + +S HL H+ H ++
Sbjct: 3 FACP--ECPKRFMRSDHLTLHILLHENKK 29
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 53.5 bits (128), Expect = 1e-09
Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 9/80 (11%)
Query: 277 KSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRS 336
S + H G+R C + CG F R LSR K C C + +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKC--SKCGIIFIRRSTLSRRK-------TPMCEKCRKDSCQE 52
Query: 337 DHLAKHVKRHSKDGAITPSN 356
L K S PS+
Sbjct: 53 AALNKDEGNESGKKTSGPSS 72
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 51.5 bits (123), Expect = 3e-09
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 286 RTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICN 330
+ + C+ CG+ F L+RHK +H+GEK + +
Sbjct: 5 SSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 47.6 bits (113), Expect = 8e-08
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 254 PATNDPRRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLC 296
++ R+ C CGK + HL H +H+GE+P+
Sbjct: 3 SGSSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 36.1 bits (83), Expect = 8e-04
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 316 RTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ K+ C IC + F HL +H HS
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLSHS 36
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 50.6 bits (121), Expect = 5e-09
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 283 AHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
+ + GE PF C + C R F++ + L +H+RTH +
Sbjct: 2 SSGSSGAGENPFKC--SKCDRVFTQRNYLVQHERTHARKS 39
Score = 44.1 bits (104), Expect = 1e-06
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+ GE F CS C+R F + ++L +H + H+
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 35.2 bits (81), Expect = 0.001
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRTHTGERP 293
F+C+ C + + + ++L H RTH +
Sbjct: 13 FKCS--KCDRVFTQRNYLVQHERTHARKSG 40
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 50.0 bits (120), Expect = 6e-09
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
R F+C+ C R F+R + L RH R+HT EK
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
Score = 42.3 bits (100), Expect = 3e-06
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 322 KKFGCSICNRRFMRSDHLAKHVKRHSKD 349
+ F C +C R F R +HL +H + H+ +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 39.2 bits (92), Expect = 4e-05
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGER 292
R F C C + + + HLK H R+HT E+
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 53.0 bits (126), Expect = 6e-09
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 278 SSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSD 337
S + F+C C FS S L +H R K C +C + F +D
Sbjct: 59 ESSYLYRLLASKAISQFVCPL--CLMPFSSSVSLKQHIRYTEHTKV--CPVCKKEFTSTD 114
Query: 338 HLAKHVKRH 346
HV +
Sbjct: 115 SALDHVCKK 123
Score = 47.2 bits (111), Expect = 7e-07
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 2/86 (2%)
Query: 266 CNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSR--HKRTHTGEKK 323
N++ + + H T +R DE S +
Sbjct: 15 SNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLLASKAISQ 74
Query: 324 FGCSICNRRFMRSDHLAKHVKRHSKD 349
F C +C F S L +H++
Sbjct: 75 FVCPLCLMPFSSSVSLKQHIRYTEHT 100
Score = 41.1 bits (95), Expect = 9e-05
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 271 CGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRH-KRTHTG 320
C + S LK H+R E +C C + F+ +D H + H
Sbjct: 80 CLMPFSSSVSLKQHIRYT--EHTKVCPV--CKKEFTSTDSALDHVCKKHNI 126
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 52.2 bits (124), Expect = 8e-09
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 7/103 (6%)
Query: 253 KPATNDPRRRIFECNYENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELS 312
A+ + +++C C +H R +C + C RF +
Sbjct: 6 SGASPVENKEVYQCRL--CNAKLSSLLEQGSHERLC--RNAAVCPY--CSLRFFSPELKQ 59
Query: 313 RHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPS 355
H + KK C C R F S + +H + P+
Sbjct: 60 EH-ESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPT 101
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 46.9 bits (111), Expect = 9e-08
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHT 319
+RP+ C GC + F R+ +L RHK++H
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 29.2 bits (65), Expect = 0.19
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHT 289
R + C++ C K + ++ L H ++H
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQ 29
Score = 27.7 bits (61), Expect = 0.55
Identities = 8/32 (25%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 321 EKKFGCSI--CNRRFMRSDHLAKHVKRHSKDG 350
++ + C C++ F+R+ L +H K H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 43.3 bits (102), Expect = 2e-06
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 261 RRIFECNYENCGKNYFKSSHLKAHMRTHTGER 292
+ FEC + C K + + ++++H++TH +R
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 40.2 bits (94), Expect = 3e-05
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
++ F C + GC + F R + H +TH ++
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 29.4 bits (66), Expect = 0.20
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 321 EKKFGCSI--CNRRFMRSDHLAKHVKRHSKD 349
+K F C C + F R ++ H++ H +D
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLED 46
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 41.2 bits (96), Expect = 9e-06
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 324 FGCSICNRRFMRSDHLAKHVK 344
F C C +RFMRSD L+KH+K
Sbjct: 3 FACPACPKRFMRSDALSKHIK 23
Score = 28.1 bits (62), Expect = 0.35
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 301 CGRRFSRSDELSRHKRT 317
C +RF RSD LS+H +T
Sbjct: 8 CPKRFMRSDALSKHIKT 24
Score = 25.1 bits (54), Expect = 4.5
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 264 FECNYENCGKNYFKSSHLKAHMRT 287
F C C K + +S L H++T
Sbjct: 3 FAC--PACPKRFMRSDALSKHIKT 24
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 39.3 bits (91), Expect = 5e-05
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 291 ERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFG 325
++PFLC GCG+RF+ D L+ HK H KFG
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHEMTLKFG 38
Score = 30.8 bits (69), Expect = 0.044
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 321 EKKFGCSI--CNRRFMRSDHLAKHVKRH 346
+K F C+ C +RF DHLA H +H
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKH 31
Score = 26.2 bits (57), Expect = 2.6
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHT 289
+ F C CG+ + HL H H
Sbjct: 5 KPFLCTAPGCGQRFTNEDHLAVHKHKHE 32
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 39.6 bits (92), Expect = 9e-05
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 278 SSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSD 337
SS H T R +CQ C S L H+ + G + C C R + D
Sbjct: 2 SSGSSGHEETECPLRLAVCQH--CDLELSILK-LKEHE-DYCGARTELCGNCGRNVLVKD 57
Query: 338 HLAKHVKRHSKDGA 351
L H + ++G+
Sbjct: 58 -LKTHPEVCGREGS 70
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 38.7 bits (89), Expect = 1e-04
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 318 HTGEKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPS 355
+GEK + C +C RF R D ++ HV+ H DG++ S
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH--DGSVGKS 40
Score = 36.8 bits (84), Expect = 5e-04
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 288 HTGERPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
+GE+P+ C CG RF R D +S H R+H G
Sbjct: 5 SSGEKPYSCPV--CGLRFKRKDRMSYHVRSHDG 35
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 3e-04
Identities = 56/425 (13%), Positives = 128/425 (30%), Gaps = 127/425 (29%)
Query: 36 PFGI------REMKPKQIKDISLKKMLN-----VQDMRKKCVQMNNEETSYNILKS-LKY 83
F I P+ + L+ + + + +N + + +++ L+
Sbjct: 181 DFKIFWLNLKNCNSPETV----LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 84 KMSDRKE----MIF--VESKD-------------TNRDKE---------TSEEAANH--- 112
+ + ++ V++ T R K+ T+ + +H
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 113 -----ETKN---ACVNTKSTCVPLEASENEAFQANIQMDASTTCADMTSFVPALPRSQNL 164
E K+ ++ + +P E + +I A+ A N
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-------IAESIRDGLA--TWDNW 347
Query: 165 ------NIAQSISNGFPDMLPNPNPSSPSYGPGPQTVIFTGGSFIPVDKSSPLFIF--DK 216
+ I + ++L P + + +F + IP + L + D
Sbjct: 348 KHVNCDKLTTIIESSL-NVL-EPAEYRKMF---DRLSVFPPSAHIP---TILLSLIWFDV 399
Query: 217 KP--VNSVKSNCPSFLFFAQPPRENK----EIVTSNKIKKSNKPATNDPRRRIFEC---- 266
V V + + + P+E+ I K+K N+ A + R I +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH---RSIVDHYNIP 456
Query: 267 ---NYENCGK----NYFKSSHLKAHMRT--HTGE-----RPFL-CQW---------TGCG 302
+ ++ YF SH+ H++ H FL ++ T
Sbjct: 457 KTFDSDDLIPPYLDQYF-YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN 515
Query: 303 RRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSNIGTPSN 362
S + L + K K + C + + + + + ++ + ++
Sbjct: 516 ASGSILNTLQQLKFY----KPYICDNDPKYERLVNAILDFLPKIEENLICSKY-----TD 566
Query: 363 VLRNA 367
+LR A
Sbjct: 567 LLRIA 571
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 37.7 bits (87), Expect = 3e-04
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 266 CNYENCGKNYFKSSHLKAHM-RTHTGER------PFLCQWTGCGRRFSRSDELSRH-KRT 317
C ++ C ++ L+ H+ + H + P C W C + + H
Sbjct: 4 CKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ 63
Query: 318 H 318
H
Sbjct: 64 H 64
Score = 35.4 bits (81), Expect = 0.002
Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 9/60 (15%)
Query: 296 CQWTGCGRRFSRSDELSRH-------KRTHTGEKKFGC--SICNRRFMRSDHLAKHVKRH 346
C+W C S +L RH + + C C+ + + H+
Sbjct: 4 CKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ 63
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 34.0 bits (77), Expect = 0.003
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
+P++C C R+F+ L RH R HTGEK
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIHTGEK 30
Score = 27.0 bits (59), Expect = 1.0
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGER 292
+ + C + C + + L+ H+R HTGE+
Sbjct: 2 KPYVCIH--CQRQFADPGALQRHVRIHTGEK 30
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 33.9 bits (77), Expect = 0.004
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 294 FLCQWTGCGRRFSRSDELSRHKRTHTG 320
++C + CGR F+ +L+RHK+ HTG
Sbjct: 3 YVCHFENCGRSFNDRRKLNRHKKIHTG 29
Score = 30.4 bits (68), Expect = 0.064
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 263 IFECNYENCGKNYFKSSHLKAHMRTHTG 290
++ C++ENCG+++ L H + HTG
Sbjct: 2 VYVCHFENCGRSFNDRRKLNRHKKIHTG 29
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 37.9 bits (87), Expect = 0.006
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 314 HKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSNIGTPSNVL 364
T + + C +C+ L HV H G +T ++ ++
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHIT 221
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 32.9 bits (74), Expect = 0.007
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
RP+ C + CG+RFS ++ H R HTG
Sbjct: 2 RPYSC--SVCGKRFSLKHQMETHYRVHTG 28
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 34.4 bits (78), Expect = 0.010
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 278 SSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRT-HTGEKK---FGCSICNRRF 333
H + + E + C++ C + + + H + H + C CN
Sbjct: 3 HHHHHHNQQNKKVEGGYECKY--CTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 334 MRSDHLAKHVKRH 346
R D L++H ++
Sbjct: 61 KRYDALSEHNLKY 73
Score = 26.3 bits (57), Expect = 6.9
Identities = 6/48 (12%), Positives = 14/48 (29%)
Query: 308 SDELSRHKRTHTGEKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPS 355
+++ E + C C + + HV + + S
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSS 50
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 32.5 bits (74), Expect = 0.012
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 322 KKFGCSICNRRFMRSDHLAKHV-KRHSKD 349
K + C +CNR F R D L +H K HS +
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN 29
Score = 32.5 bits (74), Expect = 0.012
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRT-HTG 320
+ + C C R F+R D L RH + H+G
Sbjct: 1 KAYACGL--CNRAFTRRDLLIRHAQKIHSG 28
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 32.4 bits (74), Expect = 0.014
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 261 RRIFECNYENCGKNYFKSSHLKAHMRTHTGER 292
R + C++ C + + + L HM H +R
Sbjct: 4 PRSYTCSF--CKREFRSAQALGGHMNVHRRDR 33
Score = 30.5 bits (69), Expect = 0.066
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 322 KKFGCSICNRRFMRSDHLAKHVKRHSKD 349
+ + CS C R F + L H+ H +D
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRD 32
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 34.0 bits (77), Expect = 0.047
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 5/74 (6%)
Query: 280 HLKAHMRTHTGERPFLCQWTG--CGRRFSRSDELSRHKRTHTGEKKFGCSICNRRFMRSD 337
+ +A GE L W +R + + H+ GEK+ + +
Sbjct: 165 YFRACRDIRPGEW--LRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPE 222
Query: 338 HLAKHVK-RHSKDG 350
L + + G
Sbjct: 223 DLRGPIHLSVLRQG 236
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 30.5 bits (68), Expect = 0.048
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 271 CGKNYFKSSHLKAHMRTHTGER 292
CGK + ++S L AH+R HTGE+
Sbjct: 8 CGKAFTQASSLIAHVRQHTGEK 29
Score = 30.5 bits (68), Expect = 0.054
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 296 CQWTGCGRRFSRSDELSRHKRTHTGEK 322
CQ CG+ F+++ L H R HTGEK
Sbjct: 3 CQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.050
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 317 THTGEKKFGCSICNRRFMRSDHLAKHVKRHSKDGAITPSN 356
+ EK F C+ C + F S +L +H + H++ PS+
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS 45
Score = 30.9 bits (69), Expect = 0.053
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 287 THTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ E+ F C C + FS S L++H+R HT K G S
Sbjct: 6 SGQKEKCFKCN--KCEKTFSCSKYLTQHERIHTRGVKSGPS 44
Score = 25.6 bits (55), Expect = 4.4
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 259 PRRRIFECNYENCGKNYFKSSHLKAHMRTHT 289
+ + F+CN C K + S +L H R HT
Sbjct: 8 QKEKCFKCN--KCEKTFSCSKYLTQHERIHT 36
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.085
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 32/97 (32%)
Query: 8 TPSPLLSTTSIPVS-VIMKVNKDGTCIPDPFGIREMKPKQIKDISLK---KMLNV----- 58
PSP+LS +++ V VNK + +P KQ++ ISL K L V
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPA--------GKQVE-ISLVNGAKNLVVSGPPQ 384
Query: 59 ------QDMRKKCVQMNNEETSYNILKSLKYKMSDRK 89
+RK +++ + S+RK
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQS--------RIPFSERK 413
Score = 30.4 bits (68), Expect = 1.2
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 18/60 (30%)
Query: 14 STTSIPVSVIMKVNKDGTCIPDPFGIREMKPKQIKDISLKKMLNVQDMRKKCVQMNNEET 73
TS+P S++ ++ +P P ML++ ++ ++ VQ +T
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSP------------------MLSISNLTQEQVQDYVNKT 356
Score = 30.0 bits (67), Expect = 1.6
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 39 IREMKPKQIKDISLKKMLNVQDMRKK 64
+ +K ++I I L+K L+++++
Sbjct: 1869 LNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 28.5 bits (63), Expect = 5.0
Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 19/107 (17%)
Query: 120 NTKSTCVPLEASENEAFQANIQMDASTTCADMTSFVPALPRSQNLNIAQSISNGFPDMLP 179
T VP +E ++N M A + + + + + + ++
Sbjct: 1791 MTMQVAVP----RDELGRSNYGMIA----INPGRVAASFSQEALQYVVERVGKRTGWLVE 1842
Query: 180 --NPNPSSPSYGPGPQTVIFTGGSFIPVDKSSPLFIFDK-KPVNSVK 223
N N Q V G +D + + F K + ++ ++
Sbjct: 1843 IVNYN------VENQQYVA--AGDLRALDTVTNVLNFIKLQKIDIIE 1881
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.8 bits (66), Expect = 0.097
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 262 RIFECNYENCGKNYFKSSHLKAHMRTHTGER 292
+IF C Y C K + L+AH+R HT E+
Sbjct: 8 KIFTCEY--CNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.4 bits (57), Expect = 1.9
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 294 FLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
F C++ C + F L H R HT EK
Sbjct: 10 FTCEY--CNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.0 bits (56), Expect = 2.9
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 322 KKFGCSICNRRFMRSDHLAKHVKRHSKD 349
K F C CN+ F L H++ H+ +
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNE 35
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 29.3 bits (65), Expect = 0.18
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 288 HTGERPFLCQWTGCGRRFSRSDELSRHKRTHT 319
+G+RPF+C+ C F+ +RH + HT
Sbjct: 2 SSGKRPFVCRI--CLSAFTTKANCARHLKVHT 31
Score = 27.8 bits (61), Expect = 0.58
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 318 HTGEKKFGCSICNRRFMRSDHLAKHVKRHS 347
+G++ F C IC F + A+H+K H+
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVHT 31
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 28.5 bits (63), Expect = 0.24
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 322 KKFGCSICNRRFMRSDHLAKHVKRH 346
K + C C +RF++S LA H++ H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 27.7 bits (61), Expect = 0.52
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 292 RPFLCQWTGCGRRFSRSDELSRHKRTH 318
+P++C+ CG+RF +S +L+ H R H
Sbjct: 1 KPYVCE--RCGKRFVQSSQLANHIRHH 25
Score = 25.4 bits (55), Expect = 3.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 269 ENCGKNYFKSSHLKAHMRTH 288
E CGK + +SS L H+R H
Sbjct: 6 ERCGKRFVQSSQLANHIRHH 25
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 28.7 bits (63), Expect = 0.37
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 290 GERPFLCQWTGCGRRFSRSDELSRHKRTHTGE 321
+ CQ CG+ F S L H+ H GE
Sbjct: 9 AKTTSECQ--ECGKIFRHSSLLIEHQALHAGE 38
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A
{Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Length = 116
Score = 30.1 bits (68), Expect = 0.46
Identities = 7/55 (12%), Positives = 13/55 (23%), Gaps = 9/55 (16%)
Query: 273 KNYFKSS---HLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKF 324
+F + FLC G ++ + H +F
Sbjct: 30 ATFFNGIDMPNQTNKTAA------FLCAALGGPNAWTGRNLKEVHANMGVSNAQF 78
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown
function; HET: HEB; NMR {Synechococcus SP}
Length = 123
Score = 29.4 bits (66), Expect = 0.85
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 9/51 (17%)
Query: 273 KNYFKSS---HLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTG 320
+F ++ K H + F+ G RF + H+
Sbjct: 31 NRFFVNTDMAKQKQHQKD------FMTYAFGGTDRFPGRSMRAAHQDLVEN 75
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 27.5 bits (60), Expect = 0.98
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKFGCS 327
+ E+ C+ CG F + L H+ H G+K G S
Sbjct: 8 SREKSHQCR--ECGEIFFQYVSLIEHQVLHMGQKNSGPS 44
Score = 25.9 bits (56), Expect = 3.7
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 260 RRRIFECNYENCGKNYFKSSHLKAHMRTHTGER 292
R + +C CG+ +F+ L H H G++
Sbjct: 9 REKSHQC--RECGEIFFQYVSLIEHQVLHMGQK 39
>1qmo_E Mannose binding lectin, FRIL; crosslink, hematopoietic progenitor,
sugar complex; HET: MAN; 3.5A {Dolichos lab lab} SCOP:
b.29.1.1
Length = 133
Score = 29.3 bits (65), Expect = 1.1
Identities = 9/79 (11%), Positives = 24/79 (30%), Gaps = 1/79 (1%)
Query: 98 DTNRDKETSEEAANHETKNACVNTKSTCVPLEASENEAFQANIQMDASTTCADMTSFVPA 157
DT + + + H + + + A+I ++ + +T A
Sbjct: 9 DTYLNPDYGDPNYIHIGIDVNSIRSKVTAKWDWQNGKIATAHISYNSVSKRLSVT-SYYA 67
Query: 158 LPRSQNLNIAQSISNGFPD 176
+ L+ + P+
Sbjct: 68 GSKPATLSYDIELHTVLPE 86
>3aq9_A Group 1 truncated hemoglobin; 2/2 fold hemoglobin, nitric oxide
detoxification, oxygen BIN; HET: HEM; 1.74A {Tetrahymena
pyriformis} PDB: 3aq5_A* 3aq6_A* 3aq8_A* 3aq7_A*
Length = 121
Score = 28.6 bits (64), Expect = 1.5
Identities = 7/46 (15%), Positives = 10/46 (21%), Gaps = 6/46 (13%)
Query: 279 SHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKF 324
H FL G + + HK + F
Sbjct: 44 DHQTKQETD------FLTMLLGGPNHYKGKNMTEAHKGMNLQNLHF 83
>2gkm_A TRHBN, hemoglobin-like protein HBN, flavohemoglobin; truncated
hemoglobin, mutant, oxygen storage/transport complex;
HET: HEM; 1.73A {Mycobacterium tuberculosis} PDB:
1idr_A* 1rte_A* 1s56_A* 1s61_A* 2gl3_A* 2gln_A* 2gkn_A*
Length = 136
Score = 28.7 bits (64), Expect = 1.8
Identities = 7/46 (15%), Positives = 11/46 (23%), Gaps = 6/46 (13%)
Query: 279 SHLKAHMRTHTGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEKKF 324
S LK F G ++ + H+ F
Sbjct: 52 SRLKGKQVE------FFAAALGGPEPYTGAPMKQVHQGRGITMHHF 91
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair,
protein structure, spectroscopy, DNA-PK, KU86, KU80,
protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Length = 120
Score = 28.2 bits (63), Expect = 1.9
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 53 KKMLNVQDMRKKCVQMNNEETSYN-ILKSLKYKMSDRKEMIFVE----------SKDTNR 101
K + ++ R++ ++ +EE +N LK+L+ K+ ++ F E +K+
Sbjct: 45 KSIDCIRAFREEAIKF-SEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGITLITKEEAS 103
Query: 102 DKETSEEAAN 111
+ E A
Sbjct: 104 GSSVTAEEAK 113
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.4 bits (65), Expect = 2.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 322 KKFGCSICNRRFMRSDHLAKHVKRHSKDGA 351
+ C++CN RF L++H++ +D A
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDHRDDA 144
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 27.2 bits (60), Expect = 3.1
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 269 ENCGKNYFKSSHLKAHMRTHTGERPFLCQWTGCGRRFSRSDEL 311
+ CG Y + + ++ ++ C GC R +L
Sbjct: 24 KVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDL 66
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ,
structure, DNA-PK, DNA binding protein; NMR {Homo
sapiens} SCOP: a.118.19.1
Length = 152
Score = 27.3 bits (60), Expect = 5.5
Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 12/70 (17%)
Query: 53 KKMLNVQDMRKKCVQMNNEETSYN-ILKSLKYKMSDRKEMIFVE----------SKDTNR 101
K + ++ R++ ++ +EE +N LK+L+ K+ ++ F E +K+
Sbjct: 76 KSIDCIRAFREEAIKF-SEEQRFNNFLKALQEKVEIKQLNHFWEIVVQDGITLITKEEAS 134
Query: 102 DKETSEEAAN 111
+ E A
Sbjct: 135 GSSVTAEEAK 144
>2btv_A T2A, T2B, protein (VP3 core protein); virus/viral protein,
icosahedral virus; 3.50A {Bluetongue virus} SCOP:
e.28.1.1
Length = 901
Score = 27.8 bits (61), Expect = 7.6
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 7/78 (8%)
Query: 136 FQANIQMDASTTCADMTSFVPALPRSQNLNIAQSISNGFPD---MLPNPNPSSPSYGPGP 192
+ ++ + V +PRS N+ +I+ P + PNP SS +
Sbjct: 259 RRQDMIWVLALQLPVNPQVVWDVPRSSIANLIMNIATCLPTGEYIAPNPRISSITL---- 314
Query: 193 QTVIFTGGSFIPVDKSSP 210
I T G F + S+P
Sbjct: 315 TQRITTTGPFAILTGSTP 332
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.4 bits (52), Expect = 9.2
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 289 TGERPFLCQWTGCGRRFSRSDELSRHKRTHTGEK 322
+ +P+ C C + L+ H R HTGEK
Sbjct: 5 SSGKPYKCPQ--CSYASAIKANLNVHLRKHTGEK 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.129 0.387
Gapped
Lambda K H
0.267 0.0487 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,445,948
Number of extensions: 299971
Number of successful extensions: 1399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1112
Number of HSP's successfully gapped: 497
Length of query: 384
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 289
Effective length of database: 4,049,298
Effective search space: 1170247122
Effective search space used: 1170247122
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.7 bits)