BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17742
(597 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3BGV|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3BGV|C Chain C, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3BGV|D Chain D, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
In Complex With Sah
pdb|3EPP|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
(Rnmt) In Complex With Sinefungin
pdb|3EPP|B Chain B, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase
(Rnmt) In Complex With Sinefungin
Length = 313
Score = 259 bits (661), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 139/316 (43%), Positives = 188/316 (59%), Gaps = 47/316 (14%)
Query: 260 SRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVV 319
SRI Y+RNFNNW KS+LI EFL + + Q I VLD+G GKGGD+LKW G + +V
Sbjct: 4 SRIFYLRNFNNWMKSVLIGEFLEKVR--QKKKRDITVLDLGCGKGGDLLKWKKGRINKLV 61
Query: 320 FADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----------LRSQYEDKALELDL 369
DIA VS++ C+ RYE++K + ++ +FSAE L ++ D + D+
Sbjct: 62 CTDIADVSVKQCQQRYEDMKNRRDSE----YIFSAEFITADSSKELLIDKFRDPQMCFDI 117
Query: 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDV 429
SCQF HYSFES +QA ML+NA E L PGG+F+GT P+S +++ R ++ SFGN++
Sbjct: 118 CSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEI 177
Query: 430 YQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSF 489
Y V+ F PLFG KYDFNLEGVV+ PEFLVYFPLL +A ++ +K + K+ F F
Sbjct: 178 YTVK--FQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEF 235
Query: 490 YLRKIKEHAGLNLLRKMNALEGHHK-----------------------------VGTLSK 520
Y KIK + LL++M ALE + +GTLSK
Sbjct: 236 YEEKIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSK 295
Query: 521 AEWEAITLYQVFAFEK 536
+EWEA ++Y VFAFEK
Sbjct: 296 SEWEATSIYLVFAFEK 311
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 95/308 (30%), Positives = 149/308 (48%), Gaps = 40/308 (12%)
Query: 237 GLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKV 296
G + + EHYN + G E R+ S+ + +RN NN+ K+ LI + R S V
Sbjct: 18 GKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDS---------V 68
Query: 297 LDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAEL 356
LD+G GKGGD+LK+ G+ DIA VSI D + R +KR+ F
Sbjct: 69 LDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRR----------FKVFF 118
Query: 357 RSQ-----YEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN 411
R+Q + D E D++S QF HY+F + + +N A L+PGG+F+ TVP +
Sbjct: 119 RAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 178
Query: 412 QIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAK-YDFN-LEGVVNCPEFLVYFPLL 469
I+ RY++ + + ND Y+++ + P+ + Y F L+ V NC E+ V F +
Sbjct: 179 VILERYKQGRMS---NDFYKIE--LEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRM 233
Query: 470 ERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLY 529
GL + ++ F FY E G R+ L +G L++ E E + +Y
Sbjct: 234 VDGFKRLGLSLVERKGFIDFY-----EDEG----RRNPELSKKMGLGCLTREESEVVGIY 284
Query: 530 QVFAFEKV 537
+V F K+
Sbjct: 285 EVVVFRKL 292
>pdb|2VDW|A Chain A, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
pdb|2VDW|C Chain C, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
pdb|2VDW|E Chain E, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
pdb|2VDW|G Chain G, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
Length = 302
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 19/175 (10%)
Query: 255 ELRKNSRIVYMRN---------FNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGG 305
+ R N + Y N +N+ K++LI + + K+ + KVL + G G
Sbjct: 4 KFRLNPEVSYFTNKRTRGPLGILSNYVKTLLISMYCS--KTFLDDSNKRKVLAIDFGNGA 61
Query: 306 DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKAL 365
D+ K+ G + +V D + +I RY +L + + Y+ + +RS ++
Sbjct: 62 DLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSV 121
Query: 366 -------ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413
+ +++ QF IHYSF A M N +E GG + T D +++
Sbjct: 122 REVFYFGKFNIIDWQFAIHYSFHPRHYATVM-NNLSELTASGGKVLITTMDGDKL 175
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 385 QARCMLKNAAECLKPGGFFVGTVPDSNQIM 414
Q ++++AA+ LKPGGFFV P SNQ+M
Sbjct: 172 QPERVVEHAAKALKPGGFFVAYTPCSNQVM 201
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 385 QARCMLKNAAECLKPGGFFVGTVPDSNQIM 414
Q ++++AA+ LKPGGFFV P SNQ+M
Sbjct: 172 QPERVVEHAAKALKPGGFFVAYTPCSNQVM 201
>pdb|4HTF|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 12/156 (7%)
Query: 248 QKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDM 307
Q +N K SR +Y +++L + P ++VLD G G+G
Sbjct: 26 QDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEXGP--QKLRVLDAGGGEGQTA 83
Query: 308 LKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL 367
+K G V+ D+++ I+ K+ EA+ N +Q D A L
Sbjct: 84 IKXAERG-HQVILCDLSAQXIDRA-------KQAAEAKGVSDNXQFIHCAAQ--DVASHL 133
Query: 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFF 403
+ H E V R +L+ L+PGG
Sbjct: 134 ETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVL 169
>pdb|4HTF|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 12/156 (7%)
Query: 248 QKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDM 307
Q +N K SR +Y +++L + P ++VLD G G+G
Sbjct: 26 QDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEXGP--QKLRVLDAGGGEGQTA 83
Query: 308 LKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL 367
+K G V+ D+++ I+ K+ EA+ N +Q D A L
Sbjct: 84 IKXAERG-HQVILCDLSAQXIDRA-------KQAAEAKGVSDNXQFIHCAAQ--DVASHL 133
Query: 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFF 403
+ H E V R +L+ L+PGG
Sbjct: 134 ETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVL 169
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
+VLD+ G G L+ G VV D+ +EE+ R + RN+
Sbjct: 44 RVLDLACGTGIPTLELAERGY-EVVGLDL-----------HEEMLRVARRKAKERNLKIE 91
Query: 355 ELRSQYEDKAL--ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408
L+ + A E D V+ F F+ + R + AE LKPGG F+ P
Sbjct: 92 FLQGDVLEIAFKNEFDAVTMFFSTIMYFDE-EDLRKLFSKVAEALKPGGVFITDFP 146
>pdb|2C6Y|A Chain A, Crystal Structure Of Interleukin Enhancer-Binding Factor
1 Bound To Dna
pdb|2C6Y|B Chain B, Crystal Structure Of Interleukin Enhancer-Binding Factor
1 Bound To Dna
Length = 111
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 3 TDVNGPLNYLQCCPKFITMLPDVQCTPLSINNVYLRITPTFYWY 46
+D P +Y Q + ITM PD Q L++N +Y IT + +Y
Sbjct: 13 SDSKPPYSYAQLIVQAITMAPDKQ---LTLNGIYTHITKNYPYY 53
>pdb|1JXS|A Chain A, Solution Structure Of The Dna-Binding Domain Of
Interleukin Enhancer Binding Factor
Length = 98
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 4 DVNGPLNYLQCCPKFITMLPDVQCTPLSINNVYLRITPTFYWY 46
D P +Y Q + ITM PD Q L++N +Y IT + +Y
Sbjct: 1 DSKPPYSYAQLIVQAITMAPDKQ---LTLNGIYTHITKNYPYY 40
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
Length = 139
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 25/101 (24%)
Query: 329 EDCKTRYEELKRKEEARPYRRNVFSAELRSQ-------------YEDKALELDLVSCQFC 375
+DCK R+ ELK K R +R V+ E + + YE+ A L C++
Sbjct: 12 DDCKLRFLELKAK---RTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYA 68
Query: 376 IHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMAR 416
I Y F+ V A C K FF+ PD ++ ++
Sbjct: 69 I-YDFDFV--------TAENCQKSKIFFIAWCPDIAKVRSK 100
>pdb|1XFV|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFV|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3' Deoxy-Atp
pdb|1XFW|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFW|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And 3'5' Cyclic Amp (Camp)
pdb|1XFX|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFX|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin In The Presence Of 10 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFY|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFY|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin
pdb|1XFZ|A Chain A, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|B Chain B, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|C Chain C, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|D Chain D, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|E Chain E, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1XFZ|F Chain F, Crystal Structure Of Anthrax Edema Factor (ef) In Complex
With Calmodulin In The Presence Of 1 Millimolar
Exogenously Added Calcium Chloride
pdb|1Y0V|A Chain A, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|B Chain B, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|C Chain C, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|D Chain D, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|E Chain E, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
pdb|1Y0V|F Chain F, Crystal Structure Of Anthrax Edema Factor (Ef) In Complex
With Calmodulin And Pyrophosphate
Length = 777
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 244 EHYNQ---KKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPL--GSPIKVLD 298
EHY + K+N TE K + + + NN K+ +E L + + +Q L P VL+
Sbjct: 13 EHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKKIPKDVLE 72
Query: 299 MGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEAR 345
+ S GG+ + F DI V ++ + EE K +R
Sbjct: 73 IYSELGGE-----------IYFTDIDLVEHKELQDLSEEEKNSMNSR 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,313,102
Number of Sequences: 62578
Number of extensions: 635995
Number of successful extensions: 1443
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1428
Number of HSP's gapped (non-prelim): 15
length of query: 597
length of database: 14,973,337
effective HSP length: 104
effective length of query: 493
effective length of database: 8,465,225
effective search space: 4173355925
effective search space used: 4173355925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)