Query psy17742
Match_columns 597
No_of_seqs 550 out of 3022
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 21:47:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1975|consensus 100.0 1.3E-56 2.8E-61 456.2 24.6 298 235-541 69-373 (389)
2 PF03291 Pox_MCEL: mRNA cappin 100.0 1.3E-54 2.8E-59 456.8 19.9 298 235-537 6-331 (331)
3 PRK11036 putative S-adenosyl-L 99.8 6.1E-18 1.3E-22 172.3 18.5 208 292-536 44-254 (255)
4 PLN02396 hexaprenyldihydroxybe 99.8 4.5E-17 9.7E-22 171.8 21.8 161 292-487 131-291 (322)
5 COG2226 UbiE Methylase involve 99.7 1.1E-17 2.4E-22 168.9 13.6 204 233-486 11-225 (238)
6 PF01209 Ubie_methyltran: ubiE 99.7 1.3E-17 2.7E-22 168.6 10.7 170 292-485 47-220 (233)
7 COG2227 UbiG 2-polyprenyl-3-me 99.7 2E-17 4.3E-22 165.4 8.9 158 292-486 59-216 (243)
8 PLN02244 tocopherol O-methyltr 99.7 4.4E-16 9.5E-21 165.5 17.8 226 233-492 52-285 (340)
9 PLN02233 ubiquinone biosynthes 99.7 2.2E-15 4.8E-20 154.5 20.4 165 292-486 73-249 (261)
10 PF13489 Methyltransf_23: Meth 99.7 1.3E-15 2.8E-20 141.9 14.1 138 292-482 22-160 (161)
11 PF12847 Methyltransf_18: Meth 99.6 1.8E-15 3.9E-20 133.5 12.0 110 292-408 1-112 (112)
12 PRK10258 biotin biosynthesis p 99.6 3.1E-14 6.7E-19 144.3 21.2 105 292-413 42-146 (251)
13 PF08241 Methyltransf_11: Meth 99.6 2.4E-15 5.2E-20 127.4 9.9 95 297-405 1-95 (95)
14 TIGR02752 MenG_heptapren 2-hep 99.6 2.9E-14 6.4E-19 142.3 18.3 107 292-409 45-153 (231)
15 PTZ00098 phosphoethanolamine N 99.6 4.8E-14 1E-18 144.9 19.5 156 292-493 52-210 (263)
16 PRK15068 tRNA mo(5)U34 methylt 99.6 5.5E-14 1.2E-18 148.5 16.5 156 292-488 122-277 (322)
17 PF02353 CMAS: Mycolic acid cy 99.6 5.1E-14 1.1E-18 145.6 15.8 177 276-495 50-227 (273)
18 TIGR00452 methyltransferase, p 99.6 8.6E-14 1.9E-18 146.5 17.3 172 270-486 103-274 (314)
19 smart00828 PKS_MT Methyltransf 99.5 1E-13 2.2E-18 137.7 16.2 150 295-493 2-152 (224)
20 PRK14103 trans-aconitate 2-met 99.5 1.1E-13 2.3E-18 141.0 16.2 99 292-409 29-128 (255)
21 KOG1270|consensus 99.5 2.3E-14 5.1E-19 144.6 10.9 160 293-485 90-249 (282)
22 PF13847 Methyltransf_31: Meth 99.5 7.6E-14 1.6E-18 131.0 13.4 106 292-409 3-112 (152)
23 TIGR00740 methyltransferase, p 99.5 5.2E-13 1.1E-17 134.6 18.7 107 292-408 53-162 (239)
24 KOG1540|consensus 99.5 1.6E-13 3.4E-18 138.0 14.0 200 236-482 63-278 (296)
25 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 5.2E-13 1.1E-17 131.3 16.5 104 292-408 39-144 (223)
26 TIGR02021 BchM-ChlM magnesium 99.5 1E-12 2.2E-17 130.7 18.1 152 292-486 55-207 (219)
27 PLN02336 phosphoethanolamine N 99.5 5.4E-13 1.2E-17 147.5 17.7 158 292-494 266-423 (475)
28 PF08242 Methyltransf_12: Meth 99.5 6E-15 1.3E-19 128.2 1.0 97 297-403 1-99 (99)
29 PRK11207 tellurite resistance 99.5 2.9E-13 6.4E-18 133.1 12.8 103 292-405 30-132 (197)
30 PRK15451 tRNA cmo(5)U34 methyl 99.5 3.9E-13 8.5E-18 136.7 13.6 106 292-407 56-164 (247)
31 COG2230 Cfa Cyclopropane fatty 99.5 7.1E-13 1.5E-17 136.7 15.4 165 290-496 70-234 (283)
32 PRK00216 ubiE ubiquinone/menaq 99.5 1.8E-12 3.8E-17 128.8 17.6 106 292-407 51-158 (239)
33 PRK05785 hypothetical protein; 99.4 1.4E-12 3.1E-17 131.2 15.3 91 292-401 51-141 (226)
34 PRK05134 bifunctional 3-demeth 99.4 2.6E-12 5.6E-17 128.6 17.1 157 292-484 48-204 (233)
35 TIGR00477 tehB tellurite resis 99.4 8.3E-13 1.8E-17 129.8 12.4 103 292-406 30-132 (195)
36 PRK07580 Mg-protoporphyrin IX 99.4 9.6E-12 2.1E-16 123.7 20.1 154 292-487 63-216 (230)
37 PF13649 Methyltransf_25: Meth 99.4 3.1E-13 6.8E-18 118.2 8.2 96 296-401 1-101 (101)
38 TIGR01983 UbiG ubiquinone bios 99.4 4.7E-12 1E-16 125.6 17.6 161 292-487 45-205 (224)
39 PLN02490 MPBQ/MSBQ methyltrans 99.4 2.4E-12 5.2E-17 136.8 15.7 146 292-489 113-260 (340)
40 PRK11705 cyclopropane fatty ac 99.4 6.6E-12 1.4E-16 135.8 19.4 157 292-496 167-323 (383)
41 PRK06202 hypothetical protein; 99.4 1.8E-12 4E-17 130.1 13.4 158 292-486 60-223 (232)
42 PRK11873 arsM arsenite S-adeno 99.4 1.5E-12 3.3E-17 133.6 12.6 106 292-408 77-184 (272)
43 PF07021 MetW: Methionine bios 99.4 6.4E-12 1.4E-16 122.7 16.1 157 292-488 13-170 (193)
44 PRK01683 trans-aconitate 2-met 99.4 1.5E-12 3.2E-17 132.4 12.3 102 292-410 31-133 (258)
45 PLN02585 magnesium protoporphy 99.4 1.2E-11 2.6E-16 130.4 19.1 155 292-484 144-298 (315)
46 PRK08317 hypothetical protein; 99.4 6.4E-12 1.4E-16 124.2 16.1 106 292-409 19-126 (241)
47 PRK12335 tellurite resistance 99.4 2.1E-12 4.6E-17 134.2 12.5 103 293-407 121-223 (287)
48 PF03848 TehB: Tellurite resis 99.4 3.1E-12 6.8E-17 125.7 12.0 104 292-407 30-133 (192)
49 TIGR02469 CbiT precorrin-6Y C5 99.4 8.8E-12 1.9E-16 111.2 13.6 104 292-408 19-123 (124)
50 KOG2361|consensus 99.4 7.6E-12 1.6E-16 125.1 13.3 188 255-484 43-236 (264)
51 TIGR02072 BioC biotin biosynth 99.4 7.8E-12 1.7E-16 123.9 13.4 107 292-413 34-141 (240)
52 PF08003 Methyltransf_9: Prote 99.3 1.8E-11 3.8E-16 126.9 16.1 154 292-487 115-269 (315)
53 TIGR03438 probable methyltrans 99.3 3E-11 6.5E-16 126.6 17.5 110 292-408 63-178 (301)
54 KOG4300|consensus 99.3 4.4E-12 9.5E-17 124.2 10.2 108 293-410 77-185 (252)
55 TIGR02081 metW methionine bios 99.3 1.9E-11 4E-16 119.7 13.0 157 292-488 13-170 (194)
56 smart00138 MeTrc Methyltransfe 99.3 1.5E-11 3.3E-16 126.6 11.4 112 292-406 99-241 (264)
57 PRK00121 trmB tRNA (guanine-N( 99.3 1.8E-11 3.8E-16 121.1 11.1 122 292-419 40-168 (202)
58 TIGR03587 Pse_Me-ase pseudamin 99.3 4E-11 8.6E-16 119.0 13.4 99 292-407 43-142 (204)
59 PRK00107 gidB 16S rRNA methylt 99.3 3.7E-11 8.1E-16 117.8 13.0 103 292-410 45-148 (187)
60 TIGR00537 hemK_rel_arch HemK-r 99.3 1.2E-10 2.7E-15 112.3 16.3 106 292-408 19-141 (179)
61 TIGR03840 TMPT_Se_Te thiopurin 99.3 3.5E-11 7.6E-16 120.2 12.8 113 292-407 34-152 (213)
62 PRK13255 thiopurine S-methyltr 99.3 9.9E-11 2.1E-15 117.4 15.9 111 292-405 37-153 (218)
63 PRK00517 prmA ribosomal protei 99.3 9.3E-11 2E-15 119.6 15.3 96 292-408 119-214 (250)
64 PF05891 Methyltransf_PK: AdoM 99.3 7.6E-11 1.7E-15 117.2 13.7 148 292-486 55-202 (218)
65 TIGR00138 gidB 16S rRNA methyl 99.2 1.6E-10 3.4E-15 112.7 15.4 99 293-407 43-142 (181)
66 PF05401 NodS: Nodulation prot 99.2 3.8E-11 8.2E-16 117.7 10.9 105 293-409 44-148 (201)
67 PF05175 MTS: Methyltransferas 99.2 1.1E-10 2.3E-15 112.3 13.9 111 292-410 31-143 (170)
68 KOG1541|consensus 99.2 3.2E-11 6.9E-16 119.2 10.2 121 276-410 36-163 (270)
69 PRK06922 hypothetical protein; 99.2 6.1E-11 1.3E-15 133.9 13.0 108 292-407 418-537 (677)
70 TIGR00406 prmA ribosomal prote 99.2 1.7E-10 3.7E-15 120.1 14.5 106 292-412 159-264 (288)
71 PF13659 Methyltransf_26: Meth 99.2 9.1E-11 2E-15 104.4 10.3 112 293-409 1-117 (117)
72 PRK14968 putative methyltransf 99.2 4.6E-10 1E-14 107.7 15.5 109 292-408 23-149 (188)
73 PRK08287 cobalt-precorrin-6Y C 99.2 4.6E-10 1E-14 109.1 15.0 103 292-410 31-134 (187)
74 TIGR02716 C20_methyl_CrtF C-20 99.2 4E-10 8.6E-15 117.9 15.6 105 292-407 149-254 (306)
75 PRK11088 rrmA 23S rRNA methylt 99.2 1.4E-10 3E-15 119.6 11.9 101 292-415 85-189 (272)
76 PLN02336 phosphoethanolamine N 99.2 1.2E-10 2.6E-15 128.9 12.2 104 292-406 37-141 (475)
77 PRK00377 cbiT cobalt-precorrin 99.2 7.7E-10 1.7E-14 108.8 15.6 113 292-416 40-154 (198)
78 KOG1271|consensus 99.1 2.5E-10 5.4E-15 110.1 10.8 121 293-419 68-195 (227)
79 COG4976 Predicted methyltransf 99.1 1.2E-10 2.6E-15 115.8 8.9 140 292-485 125-265 (287)
80 TIGR00091 tRNA (guanine-N(7)-) 99.1 2.8E-10 6E-15 111.7 11.5 117 292-415 16-140 (194)
81 cd02440 AdoMet_MTases S-adenos 99.1 5.1E-10 1.1E-14 93.7 11.2 103 295-406 1-103 (107)
82 PRK09489 rsmC 16S ribosomal RN 99.1 4.2E-10 9.1E-15 120.1 13.3 107 293-409 197-305 (342)
83 PF06325 PrmA: Ribosomal prote 99.1 2.6E-10 5.6E-15 119.2 11.0 100 292-408 161-260 (295)
84 COG2264 PrmA Ribosomal protein 99.1 3.3E-10 7.1E-15 118.0 11.6 103 292-408 162-264 (300)
85 PLN03075 nicotianamine synthas 99.1 6.2E-10 1.3E-14 116.1 13.6 107 292-407 123-233 (296)
86 PRK13944 protein-L-isoaspartat 99.1 6E-10 1.3E-14 110.3 12.8 101 292-408 72-174 (205)
87 PRK14967 putative methyltransf 99.1 7.3E-10 1.6E-14 110.9 13.2 109 292-409 36-161 (223)
88 PRK04266 fibrillarin; Provisio 99.1 1.3E-09 2.8E-14 110.0 14.6 103 292-409 72-178 (226)
89 COG4106 Tam Trans-aconitate me 99.1 2.1E-10 4.5E-15 113.3 7.7 102 292-410 30-132 (257)
90 PRK15001 SAM-dependent 23S rib 99.1 1.3E-09 2.7E-14 117.7 14.1 109 293-408 229-341 (378)
91 TIGR03534 RF_mod_PrmC protein- 99.1 5.5E-09 1.2E-13 105.1 16.7 108 292-407 87-217 (251)
92 TIGR00080 pimt protein-L-isoas 99.0 1.8E-09 3.8E-14 107.6 12.6 101 292-409 77-179 (215)
93 PF05724 TPMT: Thiopurine S-me 99.0 1.7E-09 3.8E-14 108.5 12.5 148 292-485 37-190 (218)
94 KOG3010|consensus 99.0 4.9E-10 1.1E-14 112.3 8.3 104 294-409 35-139 (261)
95 PRK07402 precorrin-6B methylas 99.0 5.4E-09 1.2E-13 102.5 14.6 109 292-414 40-149 (196)
96 COG4123 Predicted O-methyltran 99.0 5.3E-09 1.1E-13 106.5 14.3 136 272-419 31-184 (248)
97 PRK13942 protein-L-isoaspartat 99.0 3.5E-09 7.7E-14 105.5 12.9 100 292-408 76-177 (212)
98 TIGR01177 conserved hypothetic 99.0 3.1E-09 6.7E-14 112.7 11.9 120 292-419 182-306 (329)
99 TIGR03533 L3_gln_methyl protei 99.0 6.5E-09 1.4E-13 108.3 13.9 113 292-411 121-255 (284)
100 PRK00312 pcm protein-L-isoaspa 99.0 5.6E-09 1.2E-13 103.5 12.8 99 292-408 78-176 (212)
101 PRK14121 tRNA (guanine-N(7)-)- 99.0 7E-09 1.5E-13 111.9 14.2 115 292-415 122-243 (390)
102 PLN02232 ubiquinone biosynthes 98.9 1.3E-09 2.8E-14 104.0 7.0 143 319-485 1-147 (160)
103 PRK13256 thiopurine S-methyltr 98.9 5E-09 1.1E-13 105.7 11.3 114 292-408 43-164 (226)
104 PRK11188 rrmJ 23S rRNA methylt 98.9 3.2E-09 6.9E-14 105.8 9.3 106 292-417 51-175 (209)
105 PRK00811 spermidine synthase; 98.9 6.6E-09 1.4E-13 108.1 11.5 113 292-409 76-193 (283)
106 PTZ00146 fibrillarin; Provisio 98.9 2E-08 4.4E-13 104.6 14.7 102 291-406 131-236 (293)
107 TIGR00536 hemK_fam HemK family 98.9 1.4E-08 3E-13 105.5 13.5 110 294-410 116-247 (284)
108 PF05219 DREV: DREV methyltran 98.9 1.3E-08 2.7E-13 103.8 11.7 98 292-410 94-191 (265)
109 PRK11805 N5-glutamine S-adenos 98.9 1.9E-08 4.1E-13 106.0 13.1 110 294-410 135-266 (307)
110 PRK09328 N5-glutamine S-adenos 98.9 2.8E-08 6.2E-13 101.7 13.9 108 292-407 108-238 (275)
111 COG2242 CobL Precorrin-6B meth 98.9 7.8E-08 1.7E-12 93.8 15.9 128 291-434 33-161 (187)
112 TIGR00438 rrmJ cell division p 98.9 1.1E-08 2.3E-13 99.8 9.9 100 292-411 32-150 (188)
113 PRK04457 spermidine synthase; 98.8 1.9E-08 4E-13 103.7 11.1 114 292-411 66-181 (262)
114 TIGR03704 PrmC_rel_meth putati 98.8 9E-08 2E-12 98.0 15.2 109 293-410 87-219 (251)
115 COG2813 RsmC 16S RNA G1207 met 98.8 3.6E-08 7.8E-13 102.6 12.0 117 293-418 159-277 (300)
116 PHA03411 putative methyltransf 98.8 4.8E-08 1E-12 101.0 12.7 101 293-406 65-182 (279)
117 PF06080 DUF938: Protein of un 98.8 1.1E-07 2.3E-12 94.3 14.7 152 295-484 28-191 (204)
118 PRK11783 rlmL 23S rRNA m(2)G24 98.8 2.2E-08 4.7E-13 116.4 11.2 114 292-410 538-659 (702)
119 PRK14966 unknown domain/N5-glu 98.8 7.5E-08 1.6E-12 104.8 13.8 119 293-419 252-395 (423)
120 PRK13168 rumA 23S rRNA m(5)U19 98.7 1.4E-07 3.1E-12 104.0 15.5 125 274-418 283-410 (443)
121 KOG2899|consensus 98.7 9.7E-08 2.1E-12 96.0 12.7 118 292-409 58-211 (288)
122 TIGR00563 rsmB ribosomal RNA s 98.7 7.6E-08 1.6E-12 105.7 13.1 114 292-410 238-371 (426)
123 PRK15128 23S rRNA m(5)C1962 me 98.7 3.7E-08 7.9E-13 107.2 10.2 113 292-409 220-341 (396)
124 PF01739 CheR: CheR methyltran 98.7 3.9E-08 8.5E-13 97.3 9.4 112 292-406 31-174 (196)
125 PRK13943 protein-L-isoaspartat 98.7 1E-07 2.3E-12 101.0 13.1 100 292-408 80-181 (322)
126 PRK14902 16S rRNA methyltransf 98.7 9.1E-08 2E-12 105.6 12.8 112 292-409 250-381 (444)
127 PRK10901 16S rRNA methyltransf 98.7 1.3E-07 2.7E-12 104.0 13.6 109 292-408 244-373 (427)
128 PRK14903 16S rRNA methyltransf 98.7 1.2E-07 2.6E-12 104.4 13.2 112 292-410 237-369 (431)
129 PRK10909 rsmD 16S rRNA m(2)G96 98.7 2E-07 4.4E-12 92.4 13.3 108 292-410 53-162 (199)
130 PRK14904 16S rRNA methyltransf 98.7 1.1E-07 2.4E-12 104.9 12.7 110 292-410 250-380 (445)
131 PRK01544 bifunctional N5-gluta 98.7 8.3E-08 1.8E-12 107.6 11.8 111 293-410 139-272 (506)
132 KOG2940|consensus 98.7 1.1E-08 2.5E-13 101.8 4.2 131 270-415 52-182 (325)
133 TIGR00417 speE spermidine synt 98.7 9.3E-08 2E-12 98.8 11.0 114 293-410 73-189 (270)
134 TIGR00446 nop2p NOL1/NOP2/sun 98.7 1.7E-07 3.7E-12 96.6 12.4 112 292-410 71-202 (264)
135 PRK14901 16S rRNA methyltransf 98.7 1.6E-07 3.5E-12 103.3 12.8 111 292-408 252-385 (434)
136 PF01135 PCMT: Protein-L-isoas 98.7 1.6E-07 3.4E-12 93.9 11.6 100 292-408 72-173 (209)
137 COG2518 Pcm Protein-L-isoaspar 98.7 2E-07 4.3E-12 92.7 11.6 99 292-408 72-170 (209)
138 COG2890 HemK Methylase of poly 98.6 1.8E-07 4E-12 97.4 11.6 115 295-418 113-251 (280)
139 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.6 2.6E-07 5.7E-12 94.8 12.5 155 292-484 56-238 (256)
140 PLN02781 Probable caffeoyl-CoA 98.6 2.4E-07 5.2E-12 94.0 11.6 103 292-406 68-177 (234)
141 PLN02366 spermidine synthase 98.6 2.5E-07 5.3E-12 97.6 11.2 111 292-407 91-206 (308)
142 PRK01581 speE spermidine synth 98.6 4.3E-07 9.4E-12 97.2 12.9 114 292-410 150-271 (374)
143 PF12147 Methyltransf_20: Puta 98.6 2.8E-06 6.1E-11 88.0 17.1 112 292-407 135-249 (311)
144 PF02390 Methyltransf_4: Putat 98.5 6.9E-07 1.5E-11 88.3 12.1 117 294-419 19-145 (195)
145 smart00650 rADc Ribosomal RNA 98.5 4.2E-07 9E-12 87.2 10.0 108 292-414 13-120 (169)
146 KOG1499|consensus 98.5 4.1E-07 8.8E-12 96.1 10.1 105 292-405 60-165 (346)
147 PRK03612 spermidine synthase; 98.5 3.1E-07 6.7E-12 103.4 9.8 112 292-408 297-416 (521)
148 PRK03522 rumB 23S rRNA methylu 98.5 7.8E-07 1.7E-11 93.9 11.8 112 292-418 173-284 (315)
149 PRK11727 23S rRNA mA1618 methy 98.5 4.9E-06 1.1E-10 88.3 17.6 82 292-378 114-201 (321)
150 PF00891 Methyltransf_2: O-met 98.5 1.3E-06 2.7E-11 88.3 12.5 97 292-407 100-199 (241)
151 COG2519 GCD14 tRNA(1-methylade 98.5 1.1E-06 2.4E-11 89.3 11.8 115 290-420 92-208 (256)
152 PF10294 Methyltransf_16: Puta 98.5 1.2E-06 2.6E-11 84.8 11.2 132 270-410 20-159 (173)
153 PLN02672 methionine S-methyltr 98.4 1E-06 2.2E-11 105.7 11.8 113 293-410 119-281 (1082)
154 PF05148 Methyltransf_8: Hypot 98.4 1.3E-06 2.9E-11 86.7 9.9 113 292-484 72-184 (219)
155 TIGR00095 RNA methyltransferas 98.4 3.1E-06 6.8E-11 83.2 12.2 109 292-410 49-162 (189)
156 PRK10611 chemotaxis methyltran 98.4 1.3E-06 2.9E-11 91.2 9.3 112 293-407 116-262 (287)
157 TIGR03439 methyl_EasF probable 98.4 2.4E-05 5.2E-10 83.0 18.8 189 292-484 76-308 (319)
158 TIGR00479 rumA 23S rRNA (uraci 98.4 5.5E-06 1.2E-10 91.1 14.4 112 292-418 292-406 (431)
159 PF01596 Methyltransf_3: O-met 98.3 4.6E-06 9.9E-11 83.2 12.2 104 292-407 45-155 (205)
160 PHA03412 putative methyltransf 98.3 1.6E-06 3.4E-11 88.1 8.7 97 293-402 50-158 (241)
161 PF03602 Cons_hypoth95: Conser 98.3 4.2E-06 9.2E-11 82.0 10.6 110 292-410 42-156 (183)
162 TIGR00478 tly hemolysin TlyA f 98.3 2.6E-06 5.7E-11 86.3 9.1 97 292-407 75-171 (228)
163 TIGR02085 meth_trns_rumB 23S r 98.3 6.5E-06 1.4E-10 89.1 12.4 113 292-419 233-345 (374)
164 COG1092 Predicted SAM-dependen 98.3 4.5E-06 9.8E-11 90.6 11.1 115 292-410 217-339 (393)
165 PLN02476 O-methyltransferase 98.3 7.8E-06 1.7E-10 85.1 12.4 103 292-406 118-227 (278)
166 KOG2904|consensus 98.3 1.2E-05 2.6E-10 82.5 13.2 113 293-408 149-286 (328)
167 PF07942 N2227: N2227-like pro 98.3 6.8E-05 1.5E-09 77.7 18.9 197 234-485 10-242 (270)
168 COG1352 CheR Methylase of chem 98.3 5E-06 1.1E-10 86.1 10.6 112 292-406 96-240 (268)
169 PF10672 Methyltrans_SAM: S-ad 98.2 7.1E-06 1.5E-10 85.7 11.2 113 292-410 123-241 (286)
170 COG2263 Predicted RNA methylas 98.2 3.5E-06 7.5E-11 82.4 8.1 74 292-376 45-118 (198)
171 PF11968 DUF3321: Putative met 98.2 1.5E-05 3.2E-10 79.7 12.6 123 292-484 51-180 (219)
172 PF08704 GCD14: tRNA methyltra 98.2 3.7E-06 7.9E-11 86.1 8.6 117 291-421 39-160 (247)
173 COG0220 Predicted S-adenosylme 98.2 1E-05 2.2E-10 81.9 11.1 114 294-415 50-172 (227)
174 COG4122 Predicted O-methyltran 98.2 1.4E-05 3E-10 80.5 11.5 103 292-406 59-165 (219)
175 KOG1269|consensus 98.1 7.8E-06 1.7E-10 88.1 9.6 153 238-406 57-214 (364)
176 PF03141 Methyltransf_29: Puta 98.1 1.9E-06 4.1E-11 94.8 4.3 101 294-410 119-222 (506)
177 KOG3045|consensus 98.1 1.2E-05 2.6E-10 81.9 9.5 86 292-408 180-265 (325)
178 PF01728 FtsJ: FtsJ-like methy 98.1 1.5E-05 3.3E-10 76.9 9.6 107 292-410 23-142 (181)
179 COG1041 Predicted DNA modifica 98.1 1.6E-05 3.4E-10 84.5 10.3 110 292-408 197-311 (347)
180 COG0500 SmtA SAM-dependent met 98.1 3.4E-05 7.4E-10 66.4 10.5 104 296-411 52-159 (257)
181 PF05185 PRMT5: PRMT5 arginine 98.0 2.1E-05 4.5E-10 87.2 10.6 103 293-404 187-294 (448)
182 PLN02823 spermine synthase 98.0 2E-05 4.4E-10 84.1 9.9 111 292-407 103-220 (336)
183 PRK04338 N(2),N(2)-dimethylgua 98.0 4.2E-05 9.1E-10 83.2 12.5 106 293-413 58-164 (382)
184 KOG3178|consensus 98.0 2E-05 4.2E-10 83.6 8.4 100 292-408 177-276 (342)
185 PLN02589 caffeoyl-CoA O-methyl 97.9 7.6E-05 1.6E-09 76.6 11.9 103 292-406 79-189 (247)
186 TIGR00308 TRM1 tRNA(guanine-26 97.9 5.8E-05 1.3E-09 81.8 11.3 106 293-412 45-152 (374)
187 PRK01544 bifunctional N5-gluta 97.9 6.4E-05 1.4E-09 84.6 11.4 118 292-418 347-473 (506)
188 PRK04148 hypothetical protein; 97.9 8.5E-05 1.8E-09 69.3 9.8 98 292-412 16-114 (134)
189 PF02475 Met_10: Met-10+ like- 97.8 7.2E-05 1.6E-09 74.4 9.4 98 292-404 101-199 (200)
190 COG2521 Predicted archaeal met 97.8 3.9E-05 8.5E-10 77.2 7.4 110 291-409 133-247 (287)
191 TIGR00755 ksgA dimethyladenosi 97.8 0.00012 2.6E-09 74.9 11.2 44 292-336 29-72 (253)
192 KOG1331|consensus 97.8 2.1E-05 4.6E-10 81.2 5.3 102 292-410 45-146 (293)
193 KOG3191|consensus 97.8 0.00024 5.1E-09 69.3 11.9 113 293-414 44-175 (209)
194 PRK14896 ksgA 16S ribosomal RN 97.8 6.3E-05 1.4E-09 77.3 8.7 74 292-377 29-102 (258)
195 PF01564 Spermine_synth: Sperm 97.8 4.9E-05 1.1E-09 77.8 7.7 113 292-409 76-193 (246)
196 PRK11933 yebU rRNA (cytosine-C 97.8 0.00013 2.9E-09 81.3 11.6 114 291-410 112-245 (470)
197 COG0421 SpeE Spermidine syntha 97.8 7.4E-05 1.6E-09 78.0 8.9 112 294-409 78-192 (282)
198 KOG1500|consensus 97.8 0.00012 2.7E-09 76.9 10.3 106 292-407 177-282 (517)
199 PRK00536 speE spermidine synth 97.8 0.00011 2.4E-09 76.0 9.9 102 292-410 72-174 (262)
200 PRK00274 ksgA 16S ribosomal RN 97.8 0.00019 4.2E-09 74.4 11.5 44 292-336 42-85 (272)
201 PF02527 GidB: rRNA small subu 97.8 0.00049 1.1E-08 67.7 13.6 97 295-407 51-148 (184)
202 PF01170 UPF0020: Putative RNA 97.7 0.00021 4.5E-09 69.7 10.5 112 292-410 28-153 (179)
203 COG3963 Phospholipid N-methylt 97.7 0.00041 8.9E-09 66.9 12.1 108 291-409 47-158 (194)
204 TIGR02143 trmA_only tRNA (urac 97.7 0.00021 4.5E-09 77.0 11.3 47 294-341 199-245 (353)
205 PF02384 N6_Mtase: N-6 DNA Met 97.7 0.00013 2.7E-09 76.6 9.3 115 292-410 46-186 (311)
206 COG0742 N6-adenine-specific me 97.7 0.00033 7.2E-09 68.8 11.5 112 292-411 43-158 (187)
207 KOG3420|consensus 97.7 4.8E-05 1E-09 71.5 5.3 77 292-376 48-124 (185)
208 KOG2352|consensus 97.7 0.00019 4.2E-09 79.0 10.6 107 294-408 50-162 (482)
209 PTZ00338 dimethyladenosine tra 97.7 0.0001 2.2E-09 77.4 8.2 77 292-377 36-112 (294)
210 PRK05031 tRNA (uracil-5-)-meth 97.6 0.00022 4.8E-09 77.0 9.6 47 294-341 208-254 (362)
211 PF09243 Rsm22: Mitochondrial 97.6 0.00069 1.5E-08 70.5 12.9 108 292-411 33-143 (274)
212 PRK00050 16S rRNA m(4)C1402 me 97.5 0.00017 3.8E-09 75.8 6.9 59 275-337 6-66 (296)
213 KOG2798|consensus 97.5 0.0042 9.1E-08 65.3 16.0 204 233-490 103-342 (369)
214 PF08123 DOT1: Histone methyla 97.4 0.00097 2.1E-08 66.7 10.5 107 291-405 41-156 (205)
215 TIGR02987 met_A_Alw26 type II 97.4 0.00062 1.3E-08 76.9 9.8 47 293-339 32-87 (524)
216 PF09445 Methyltransf_15: RNA 97.4 0.00042 9.1E-09 66.8 6.7 75 295-373 2-76 (163)
217 KOG1661|consensus 97.3 0.00052 1.1E-08 68.3 7.3 106 292-408 82-194 (237)
218 PRK11783 rlmL 23S rRNA m(2)G24 97.2 0.0021 4.6E-08 75.2 12.1 117 292-413 190-353 (702)
219 KOG0820|consensus 97.2 0.00083 1.8E-08 69.2 7.6 74 290-373 56-130 (315)
220 COG2265 TrmA SAM-dependent met 97.2 0.0018 3.9E-08 71.6 10.0 129 270-419 275-407 (432)
221 KOG1663|consensus 97.1 0.0068 1.5E-07 61.3 12.7 106 292-406 73-182 (237)
222 COG0144 Sun tRNA and rRNA cyto 97.1 0.0049 1.1E-07 66.5 12.7 115 290-410 154-291 (355)
223 KOG3987|consensus 97.1 0.00011 2.4E-09 72.8 -0.2 97 293-410 113-210 (288)
224 COG2520 Predicted methyltransf 97.1 0.0023 4.9E-08 68.5 9.5 105 292-410 188-292 (341)
225 COG0293 FtsJ 23S rRNA methylas 97.1 0.002 4.3E-08 64.3 8.0 112 292-418 45-173 (205)
226 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.0 0.0051 1.1E-07 64.4 10.7 114 291-410 84-222 (283)
227 PF05958 tRNA_U5-meth_tr: tRNA 96.9 0.0055 1.2E-07 66.1 11.0 65 272-342 181-245 (352)
228 PF13679 Methyltransf_32: Meth 96.9 0.0084 1.8E-07 56.0 10.9 48 292-339 25-77 (141)
229 COG0357 GidB Predicted S-adeno 96.9 0.0061 1.3E-07 61.4 9.8 96 293-405 68-166 (215)
230 COG0116 Predicted N6-adenine-s 96.8 0.018 3.8E-07 62.5 13.2 123 292-420 191-357 (381)
231 PF01269 Fibrillarin: Fibrilla 96.8 0.015 3.3E-07 58.7 11.6 103 291-407 72-178 (229)
232 COG3897 Predicted methyltransf 96.7 0.0058 1.3E-07 60.5 7.7 104 292-410 79-182 (218)
233 COG1189 Predicted rRNA methyla 96.5 0.0089 1.9E-07 60.8 8.3 100 292-407 79-178 (245)
234 PRK11760 putative 23S rRNA C24 96.5 0.0099 2.1E-07 63.7 9.0 87 291-400 210-296 (357)
235 PF04816 DUF633: Family of unk 96.5 0.041 8.8E-07 55.1 12.9 112 296-419 1-114 (205)
236 KOG2915|consensus 96.4 0.022 4.7E-07 59.0 10.1 115 292-419 105-222 (314)
237 COG0030 KsgA Dimethyladenosine 96.4 0.01 2.2E-07 61.3 7.7 56 276-336 18-73 (259)
238 PF03492 Methyltransf_7: SAM d 96.3 0.032 6.9E-07 59.8 11.6 115 292-411 16-187 (334)
239 KOG1709|consensus 96.2 0.057 1.2E-06 54.4 11.5 104 292-406 101-205 (271)
240 PF04672 Methyltransf_19: S-ad 96.2 0.038 8.2E-07 57.4 10.6 129 276-411 55-194 (267)
241 TIGR01444 fkbM_fam methyltrans 96.1 0.01 2.2E-07 54.5 5.8 45 295-339 1-46 (143)
242 COG4262 Predicted spermidine s 96.1 0.037 8E-07 59.4 10.0 113 292-410 289-410 (508)
243 PF13578 Methyltransf_24: Meth 96.0 0.005 1.1E-07 54.1 3.0 97 297-406 1-104 (106)
244 PF06962 rRNA_methylase: Putat 95.9 0.039 8.4E-07 52.1 8.7 84 317-409 1-94 (140)
245 PF00398 RrnaAD: Ribosomal RNA 95.9 0.11 2.3E-06 53.7 12.5 44 292-336 30-73 (262)
246 KOG3201|consensus 95.8 0.035 7.5E-07 53.6 7.9 111 293-410 30-143 (201)
247 KOG4589|consensus 95.7 0.036 7.8E-07 54.7 7.7 109 290-411 67-188 (232)
248 PF05971 Methyltransf_10: Prot 95.7 0.04 8.7E-07 58.2 8.4 83 293-379 103-190 (299)
249 KOG2730|consensus 95.6 0.0065 1.4E-07 61.1 2.2 81 293-376 95-175 (263)
250 COG4627 Uncharacterized protei 95.5 0.0072 1.6E-07 57.8 2.0 55 363-419 44-98 (185)
251 PF03059 NAS: Nicotianamine sy 95.4 0.27 5.8E-06 51.5 13.3 110 292-410 120-233 (276)
252 PF07091 FmrO: Ribosomal RNA m 95.4 0.071 1.5E-06 54.8 8.7 105 292-410 105-211 (251)
253 COG1889 NOP1 Fibrillarin-like 95.3 0.14 3E-06 51.2 10.2 106 290-407 74-180 (231)
254 PF01861 DUF43: Protein of unk 95.2 0.58 1.3E-05 48.0 14.5 104 292-407 44-149 (243)
255 KOG2187|consensus 95.0 0.031 6.7E-07 62.4 5.1 52 291-343 382-433 (534)
256 PF03269 DUF268: Caenorhabditi 94.9 0.026 5.7E-07 54.3 3.7 105 293-410 2-114 (177)
257 PLN02668 indole-3-acetate carb 94.8 0.17 3.8E-06 55.3 10.2 47 364-410 160-240 (386)
258 PRK10742 putative methyltransf 94.7 0.15 3.2E-06 52.6 8.7 42 295-337 91-132 (250)
259 PF06859 Bin3: Bicoid-interact 94.6 0.032 6.9E-07 50.5 3.3 43 366-408 1-45 (110)
260 TIGR00006 S-adenosyl-methyltra 94.6 0.18 4E-06 53.4 9.5 60 275-338 7-67 (305)
261 PF02005 TRM: N2,N2-dimethylgu 94.4 0.15 3.2E-06 55.7 8.6 108 293-413 50-160 (377)
262 PF03141 Methyltransf_29: Puta 94.4 0.094 2E-06 58.6 7.1 98 294-406 367-466 (506)
263 COG4076 Predicted RNA methylas 94.1 0.12 2.5E-06 51.2 6.3 100 294-405 34-133 (252)
264 PHA01634 hypothetical protein 94.1 0.19 4.1E-06 46.9 7.2 47 292-338 28-74 (156)
265 TIGR00027 mthyl_TIGR00027 meth 94.1 1.6 3.5E-05 45.2 15.2 113 294-410 83-200 (260)
266 KOG2793|consensus 94.1 0.2 4.2E-06 51.7 8.2 113 293-410 87-202 (248)
267 KOG3115|consensus 93.9 0.11 2.3E-06 52.0 5.7 47 293-339 61-108 (249)
268 COG0286 HsdM Type I restrictio 93.8 0.52 1.1E-05 53.2 11.7 115 292-410 186-329 (489)
269 cd00315 Cyt_C5_DNA_methylase C 93.3 0.18 3.9E-06 52.5 6.5 43 295-337 2-44 (275)
270 COG1064 AdhP Zn-dependent alco 93.2 0.35 7.5E-06 52.1 8.5 95 290-408 164-260 (339)
271 PF01555 N6_N4_Mtase: DNA meth 93.1 0.23 4.9E-06 48.6 6.7 41 292-333 191-231 (231)
272 COG5459 Predicted rRNA methyla 92.6 0.41 8.8E-06 51.5 8.0 116 292-414 113-232 (484)
273 PRK11524 putative methyltransf 92.6 0.31 6.6E-06 51.0 7.1 45 292-337 208-252 (284)
274 KOG1122|consensus 92.6 0.71 1.5E-05 50.7 10.0 114 290-410 239-374 (460)
275 PF10354 DUF2431: Domain of un 92.6 1.5 3.2E-05 42.5 11.2 60 351-410 57-128 (166)
276 COG2384 Predicted SAM-dependen 92.0 1.8 3.9E-05 43.9 11.3 116 292-419 16-133 (226)
277 PRK13699 putative methylase; P 91.3 0.59 1.3E-05 47.4 7.2 47 292-339 163-209 (227)
278 KOG4058|consensus 91.0 1.6 3.4E-05 41.9 9.1 47 292-338 72-118 (199)
279 COG1867 TRM1 N2,N2-dimethylgua 91.0 0.92 2E-05 49.2 8.5 104 293-410 53-157 (380)
280 COG4798 Predicted methyltransf 90.9 1.2 2.5E-05 44.6 8.5 109 291-407 47-166 (238)
281 COG1565 Uncharacterized conser 90.9 4.6 0.0001 43.9 13.7 47 292-338 77-132 (370)
282 KOG2671|consensus 90.9 0.25 5.4E-06 52.9 4.1 113 291-410 207-357 (421)
283 PF07757 AdoMet_MTase: Predict 90.9 0.42 9E-06 43.3 4.9 31 292-323 58-88 (112)
284 PF04989 CmcI: Cephalosporin h 90.8 0.78 1.7E-05 46.1 7.4 109 292-407 32-147 (206)
285 KOG2198|consensus 90.6 1.2 2.7E-05 48.2 9.1 121 291-411 154-300 (375)
286 KOG0024|consensus 90.1 0.76 1.6E-05 49.1 6.9 105 290-410 167-276 (354)
287 KOG1253|consensus 90.0 0.22 4.9E-06 55.5 3.0 112 292-413 109-222 (525)
288 cd08283 FDH_like_1 Glutathione 89.6 0.97 2.1E-05 48.8 7.5 110 292-407 184-306 (386)
289 PF11599 AviRa: RRNA methyltra 89.5 0.7 1.5E-05 46.8 5.7 61 272-336 35-98 (246)
290 COG3129 Predicted SAM-dependen 89.3 0.67 1.5E-05 47.3 5.5 86 290-379 76-166 (292)
291 KOG1099|consensus 88.9 0.66 1.4E-05 47.3 5.1 104 293-410 42-166 (294)
292 KOG2539|consensus 88.5 1.9 4.2E-05 48.0 8.7 114 292-410 200-318 (491)
293 KOG1562|consensus 88.5 1.7 3.6E-05 46.0 7.9 111 292-407 121-236 (337)
294 COG4301 Uncharacterized conser 88.1 9.2 0.0002 39.7 12.7 108 292-408 78-194 (321)
295 PF04445 SAM_MT: Putative SAM- 87.3 1.2 2.6E-05 45.6 6.0 77 294-376 77-161 (234)
296 COG0275 Predicted S-adenosylme 87.3 2.4 5.2E-05 44.9 8.3 62 274-339 9-72 (314)
297 COG1063 Tdh Threonine dehydrog 86.6 2.6 5.5E-05 45.4 8.4 100 293-409 169-271 (350)
298 KOG1501|consensus 86.5 0.88 1.9E-05 50.3 4.6 49 293-341 67-115 (636)
299 cd08254 hydroxyacyl_CoA_DH 6-h 84.6 4.3 9.4E-05 42.0 8.7 98 292-407 165-263 (338)
300 KOG1596|consensus 84.6 3.5 7.5E-05 42.6 7.5 101 291-407 155-261 (317)
301 PRK09424 pntA NAD(P) transhydr 84.5 3 6.4E-05 47.5 7.8 112 292-408 164-286 (509)
302 PRK07066 3-hydroxybutyryl-CoA 84.1 55 0.0012 35.1 16.9 208 294-535 8-227 (321)
303 PF01795 Methyltransf_5: MraW 83.7 2 4.4E-05 45.7 5.8 58 276-337 8-66 (310)
304 PF11312 DUF3115: Protein of u 83.5 1.7 3.7E-05 46.2 5.1 41 366-406 200-241 (315)
305 COG3315 O-Methyltransferase in 82.8 12 0.00025 39.8 11.0 169 294-491 94-270 (297)
306 PRK09880 L-idonate 5-dehydroge 82.6 3.3 7.1E-05 43.8 7.0 96 292-407 169-266 (343)
307 KOG2920|consensus 81.0 1.3 2.7E-05 46.5 3.0 38 292-329 116-153 (282)
308 cd05188 MDR Medium chain reduc 80.6 8.2 0.00018 38.1 8.7 98 292-407 134-232 (271)
309 TIGR00675 dcm DNA-methyltransf 80.2 2.8 6.1E-05 44.5 5.4 41 296-336 1-41 (315)
310 PF00107 ADH_zinc_N: Zinc-bind 79.7 3.3 7.2E-05 37.0 5.0 90 303-409 2-91 (130)
311 COG1568 Predicted methyltransf 79.1 16 0.00034 38.7 10.1 107 292-410 152-263 (354)
312 KOG2651|consensus 78.9 4.5 9.7E-05 44.2 6.3 42 292-333 153-194 (476)
313 TIGR02437 FadB fatty oxidation 78.9 39 0.00085 40.2 14.8 175 293-494 313-502 (714)
314 PRK11730 fadB multifunctional 77.9 41 0.0009 40.0 14.6 172 294-494 314-502 (715)
315 KOG1227|consensus 77.7 1.6 3.4E-05 46.3 2.4 51 293-343 195-246 (351)
316 cd08237 ribitol-5-phosphate_DH 77.6 9.1 0.0002 40.6 8.3 90 292-406 163-255 (341)
317 PF00145 DNA_methylase: C-5 cy 77.3 4.3 9.4E-05 42.0 5.7 42 295-336 2-43 (335)
318 KOG2918|consensus 76.6 91 0.002 33.6 15.0 33 464-496 256-288 (335)
319 PRK11154 fadJ multifunctional 76.2 35 0.00076 40.5 13.4 174 293-493 309-498 (708)
320 COG0287 TyrA Prephenate dehydr 76.2 74 0.0016 33.5 14.4 158 294-484 4-170 (279)
321 COG1250 FadB 3-hydroxyacyl-CoA 76.0 78 0.0017 33.9 14.6 173 294-494 4-192 (307)
322 KOG0822|consensus 76.0 8.3 0.00018 43.9 7.5 104 293-405 368-476 (649)
323 PF02737 3HCDH_N: 3-hydroxyacy 74.3 5.8 0.00012 38.7 5.3 164 296-484 2-178 (180)
324 TIGR00497 hsdM type I restrict 71.4 22 0.00047 40.3 9.8 115 292-410 217-358 (501)
325 PF02636 Methyltransf_28: Puta 71.4 6.3 0.00014 40.3 5.0 45 293-337 19-72 (252)
326 cd08232 idonate-5-DH L-idonate 71.3 17 0.00036 38.0 8.3 94 292-407 165-262 (339)
327 TIGR01202 bchC 2-desacetyl-2-h 71.1 12 0.00026 39.0 7.2 85 293-407 145-231 (308)
328 PLN02545 3-hydroxybutyryl-CoA 71.0 1.4E+02 0.0029 31.1 15.5 172 294-491 5-190 (295)
329 TIGR02822 adh_fam_2 zinc-bindi 70.9 20 0.00043 37.8 8.9 89 292-407 165-254 (329)
330 TIGR03451 mycoS_dep_FDH mycoth 69.9 18 0.00038 38.5 8.3 98 292-406 176-275 (358)
331 KOG1098|consensus 69.5 4 8.7E-05 47.0 3.3 35 292-326 44-80 (780)
332 PF04072 LCM: Leucine carboxyl 68.5 37 0.0008 32.9 9.5 97 294-393 80-182 (183)
333 TIGR02441 fa_ox_alpha_mit fatt 67.5 31 0.00067 41.2 10.3 172 293-492 335-522 (737)
334 PF03514 GRAS: GRAS domain fam 67.3 49 0.0011 36.2 11.1 114 292-406 110-243 (374)
335 TIGR03366 HpnZ_proposed putati 67.2 14 0.0003 38.0 6.5 97 292-407 120-218 (280)
336 TIGR02440 FadJ fatty oxidation 66.7 1.2E+02 0.0025 36.1 14.8 174 294-494 305-494 (699)
337 cd08261 Zn_ADH7 Alcohol dehydr 66.2 24 0.00052 36.8 8.2 99 292-407 159-258 (337)
338 PRK05808 3-hydroxybutyryl-CoA 65.7 1.7E+02 0.0037 30.2 15.9 203 295-528 5-219 (282)
339 cd00401 AdoHcyase S-adenosyl-L 65.2 19 0.00042 40.0 7.5 86 292-407 201-289 (413)
340 cd08239 THR_DH_like L-threonin 64.9 19 0.00041 37.7 7.2 98 292-407 163-262 (339)
341 cd08245 CAD Cinnamyl alcohol d 64.4 36 0.00077 35.2 9.1 91 292-407 162-256 (330)
342 TIGR00561 pntA NAD(P) transhyd 64.0 6.4 0.00014 44.8 3.6 109 292-405 163-282 (511)
343 cd08281 liver_ADH_like1 Zinc-d 63.7 18 0.00039 38.7 6.9 97 292-406 191-289 (371)
344 PRK09260 3-hydroxybutyryl-CoA 62.8 65 0.0014 33.4 10.6 173 295-493 3-190 (288)
345 cd08230 glucose_DH Glucose deh 62.6 23 0.00049 37.5 7.3 93 292-406 172-268 (355)
346 PRK07819 3-hydroxybutyryl-CoA 62.5 23 0.0005 37.1 7.2 103 294-407 6-121 (286)
347 PRK01747 mnmC bifunctional tRN 61.5 35 0.00076 39.9 9.2 51 365-419 165-217 (662)
348 cd05278 FDH_like Formaldehyde 60.6 29 0.00064 36.1 7.7 98 292-406 167-266 (347)
349 KOG2352|consensus 59.5 31 0.00068 38.9 7.8 117 292-410 295-419 (482)
350 COG3510 CmcI Cephalosporin hyd 57.7 56 0.0012 32.9 8.4 102 292-408 69-181 (237)
351 cd08285 NADP_ADH NADP(H)-depen 57.6 32 0.0007 36.2 7.4 98 292-406 166-265 (351)
352 TIGR02356 adenyl_thiF thiazole 57.1 82 0.0018 31.2 9.7 34 292-325 20-55 (202)
353 PF11899 DUF3419: Protein of u 56.4 18 0.00038 39.8 5.2 44 364-409 293-336 (380)
354 PRK07502 cyclohexadienyl dehyd 56.0 63 0.0014 33.9 9.2 89 294-405 7-98 (307)
355 TIGR02825 B4_12hDH leukotriene 55.9 58 0.0013 33.8 8.9 96 292-406 138-236 (325)
356 cd08234 threonine_DH_like L-th 55.8 27 0.00058 36.2 6.3 93 292-407 159-257 (334)
357 PRK10309 galactitol-1-phosphat 55.6 43 0.00094 35.2 8.0 97 292-406 160-259 (347)
358 PF11899 DUF3419: Protein of u 55.4 28 0.00061 38.2 6.6 44 291-335 34-77 (380)
359 PRK11524 putative methyltransf 55.0 18 0.0004 37.7 4.9 24 386-409 59-82 (284)
360 PRK10083 putative oxidoreducta 53.7 40 0.00088 35.1 7.3 96 292-406 160-258 (339)
361 PRK07417 arogenate dehydrogena 53.5 99 0.0021 32.0 10.1 84 295-403 2-87 (279)
362 PLN02586 probable cinnamyl alc 52.8 32 0.0007 36.8 6.5 90 292-406 183-277 (360)
363 PLN03154 putative allyl alcoho 51.8 71 0.0015 34.0 8.9 98 292-406 158-257 (348)
364 TIGR03201 dearomat_had 6-hydro 51.6 46 0.00099 35.2 7.4 42 292-333 166-208 (349)
365 PRK08644 thiamine biosynthesis 51.2 1.2E+02 0.0026 30.3 9.9 33 292-324 27-61 (212)
366 PLN02740 Alcohol dehydrogenase 51.2 37 0.00081 36.5 6.7 99 292-406 198-299 (381)
367 cd08236 sugar_DH NAD(P)-depend 51.1 41 0.00089 35.1 6.9 98 292-407 159-258 (343)
368 PF02153 PDH: Prephenate dehyd 50.9 81 0.0018 32.4 8.8 144 308-484 3-157 (258)
369 PF01210 NAD_Gly3P_dh_N: NAD-d 50.8 58 0.0013 30.7 7.2 100 295-406 1-102 (157)
370 COG0270 Dcm Site-specific DNA 50.4 27 0.00059 37.2 5.5 45 293-337 3-47 (328)
371 COG0863 DNA modification methy 50.4 57 0.0012 33.5 7.7 48 292-340 222-269 (302)
372 PRK10458 DNA cytosine methylas 50.1 30 0.00066 39.1 5.9 44 292-335 87-130 (467)
373 PRK06035 3-hydroxyacyl-CoA deh 49.5 3.2E+02 0.0069 28.3 17.9 173 294-493 4-194 (291)
374 PF07109 Mg-por_mtran_C: Magne 49.4 92 0.002 27.8 7.6 76 376-484 6-81 (97)
375 PF02254 TrkA_N: TrkA-N domain 49.3 1.5E+02 0.0032 25.8 9.2 95 301-413 4-102 (116)
376 KOG3924|consensus 49.0 49 0.0011 36.6 7.0 109 291-407 191-308 (419)
377 PLN02827 Alcohol dehydrogenase 48.8 42 0.00092 36.2 6.7 98 292-406 193-294 (378)
378 cd08294 leukotriene_B4_DH_like 48.2 70 0.0015 32.9 8.0 96 292-406 143-240 (329)
379 cd08255 2-desacetyl-2-hydroxye 48.2 67 0.0014 32.3 7.7 92 292-407 97-190 (277)
380 cd08233 butanediol_DH_like (2R 46.6 90 0.002 32.8 8.6 99 292-407 172-272 (351)
381 cd05285 sorbitol_DH Sorbitol d 46.3 87 0.0019 32.8 8.5 99 292-407 162-265 (343)
382 cd08293 PTGR2 Prostaglandin re 46.1 82 0.0018 32.8 8.2 96 293-406 155-253 (345)
383 PRK05786 fabG 3-ketoacyl-(acyl 46.0 1.5E+02 0.0033 28.9 9.7 43 292-335 4-49 (238)
384 TIGR00936 ahcY adenosylhomocys 45.1 65 0.0014 35.8 7.4 88 292-408 194-283 (406)
385 TIGR02279 PaaC-3OHAcCoADH 3-hy 44.3 57 0.0012 37.1 7.1 100 294-404 6-117 (503)
386 PF05206 TRM13: Methyltransfer 44.3 39 0.00084 35.2 5.3 34 292-325 18-57 (259)
387 TIGR02819 fdhA_non_GSH formald 44.1 83 0.0018 34.3 8.1 107 292-407 185-299 (393)
388 PRK08268 3-hydroxy-acyl-CoA de 43.5 66 0.0014 36.7 7.4 101 294-405 8-120 (507)
389 COG0604 Qor NADPH:quinone redu 43.3 94 0.002 33.2 8.1 100 291-408 141-242 (326)
390 TIGR00006 S-adenosyl-methyltra 43.0 37 0.0008 36.3 4.9 33 384-416 217-251 (305)
391 cd08241 QOR1 Quinone oxidoredu 42.2 1.1E+02 0.0023 30.8 8.1 97 292-406 139-237 (323)
392 PF12692 Methyltransf_17: S-ad 42.0 81 0.0018 30.5 6.5 101 293-406 29-133 (160)
393 PRK07576 short chain dehydroge 41.9 2.1E+02 0.0045 28.8 10.1 43 292-335 8-53 (264)
394 PRK07530 3-hydroxybutyryl-CoA 41.9 93 0.002 32.3 7.8 175 294-492 5-191 (292)
395 PRK08293 3-hydroxybutyryl-CoA 41.9 4.2E+02 0.009 27.4 19.0 198 294-526 4-220 (287)
396 COG0275 Predicted S-adenosylme 41.7 42 0.00091 35.9 5.0 35 384-418 221-257 (314)
397 PF03721 UDPG_MGDP_dh_N: UDP-g 41.3 2E+02 0.0042 28.2 9.4 108 295-407 2-120 (185)
398 PRK06701 short chain dehydroge 40.8 1.9E+02 0.0042 29.8 9.9 33 292-325 45-80 (290)
399 PLN02494 adenosylhomocysteinas 40.8 75 0.0016 36.0 7.1 88 292-408 253-342 (477)
400 KOG1201|consensus 40.5 1.4E+02 0.003 31.9 8.6 76 292-376 37-124 (300)
401 PTZ00357 methyltransferase; Pr 40.5 1.1E+02 0.0024 36.4 8.4 107 294-402 702-830 (1072)
402 PRK06130 3-hydroxybutyryl-CoA 40.4 2.2E+02 0.0047 29.7 10.3 168 294-484 5-179 (311)
403 PF01795 Methyltransf_5: MraW 40.0 34 0.00074 36.6 4.1 35 384-418 218-254 (310)
404 PF05050 Methyltransf_21: Meth 39.9 53 0.0011 30.1 5.0 37 298-334 1-42 (167)
405 PLN02178 cinnamyl-alcohol dehy 39.6 63 0.0014 35.0 6.2 89 292-406 178-272 (375)
406 PRK09242 tropinone reductase; 39.1 2.5E+02 0.0054 27.8 10.2 44 292-336 8-54 (257)
407 TIGR02354 thiF_fam2 thiamine b 39.1 2.5E+02 0.0054 27.8 9.9 32 293-324 21-54 (200)
408 cd05281 TDH Threonine dehydrog 39.1 1E+02 0.0022 32.3 7.6 98 292-407 163-262 (341)
409 PRK00050 16S rRNA m(4)C1402 me 38.8 49 0.0011 35.1 5.1 33 384-416 213-247 (296)
410 cd05213 NAD_bind_Glutamyl_tRNA 38.8 1.5E+02 0.0034 31.3 8.9 39 292-330 177-217 (311)
411 COG1255 Uncharacterized protei 38.3 1.1E+02 0.0025 28.3 6.5 33 293-326 14-47 (129)
412 COG0686 Ald Alanine dehydrogen 38.0 55 0.0012 35.3 5.2 102 292-410 167-271 (371)
413 PF01555 N6_N4_Mtase: DNA meth 37.8 28 0.0006 33.7 2.9 27 384-410 33-59 (231)
414 COG5379 BtaA S-adenosylmethion 37.7 77 0.0017 33.9 6.1 45 291-336 62-106 (414)
415 cd08295 double_bond_reductase_ 37.3 1.6E+02 0.0036 30.7 8.8 98 292-406 151-250 (338)
416 PRK05867 short chain dehydroge 37.1 2.1E+02 0.0045 28.4 9.2 44 292-336 8-54 (253)
417 cd01487 E1_ThiF_like E1_ThiF_l 37.1 1.8E+02 0.0038 28.2 8.3 31 295-325 1-33 (174)
418 TIGR00692 tdh L-threonine 3-de 36.4 1.4E+02 0.003 31.2 8.1 99 292-407 161-261 (340)
419 PRK08265 short chain dehydroge 36.4 2.1E+02 0.0046 28.6 9.2 40 293-333 6-48 (261)
420 cd08242 MDR_like Medium chain 35.9 1.6E+02 0.0034 30.3 8.3 88 292-405 155-243 (319)
421 TIGR02818 adh_III_F_hyde S-(hy 35.7 1E+02 0.0022 33.0 7.0 42 292-333 185-228 (368)
422 cd08300 alcohol_DH_class_III c 35.6 1.1E+02 0.0024 32.6 7.3 99 292-406 186-287 (368)
423 cd08266 Zn_ADH_like1 Alcohol d 35.2 1.5E+02 0.0032 30.2 8.0 98 292-407 166-265 (342)
424 PRK12939 short chain dehydroge 35.0 2.9E+02 0.0064 26.9 9.8 42 293-335 7-51 (250)
425 PLN02514 cinnamyl-alcohol dehy 34.9 1.1E+02 0.0024 32.6 7.1 91 292-406 180-274 (357)
426 PRK07806 short chain dehydroge 34.9 4E+02 0.0086 26.1 10.8 33 292-325 5-40 (248)
427 PRK05396 tdh L-threonine 3-deh 34.7 1.5E+02 0.0032 31.0 8.0 100 292-408 163-264 (341)
428 PRK06124 gluconate 5-dehydroge 34.5 2.6E+02 0.0057 27.6 9.4 44 292-336 10-56 (256)
429 cd08238 sorbose_phosphate_red 34.4 1E+02 0.0022 33.6 6.9 43 292-334 175-222 (410)
430 cd00757 ThiF_MoeB_HesA_family 34.1 1.8E+02 0.0039 29.2 8.2 33 293-325 21-55 (228)
431 cd08278 benzyl_alcohol_DH Benz 34.1 1.5E+02 0.0033 31.5 8.1 98 292-407 186-285 (365)
432 cd08231 MDR_TM0436_like Hypoth 33.8 1.2E+02 0.0027 31.8 7.3 99 292-407 177-280 (361)
433 cd08279 Zn_ADH_class_III Class 33.8 1.3E+02 0.0027 32.0 7.4 99 292-407 182-282 (363)
434 PRK05476 S-adenosyl-L-homocyst 33.4 1.4E+02 0.003 33.5 7.7 86 292-407 211-299 (425)
435 cd08286 FDH_like_ADH2 formalde 33.2 1.3E+02 0.0028 31.4 7.2 98 292-406 166-265 (345)
436 PRK07523 gluconate 5-dehydroge 33.2 3.6E+02 0.0079 26.6 10.2 44 292-336 9-55 (255)
437 PRK12826 3-ketoacyl-(acyl-carr 33.0 4E+02 0.0088 25.9 10.4 42 293-335 6-50 (251)
438 TIGR00518 alaDH alanine dehydr 32.9 85 0.0019 34.2 5.9 101 292-409 166-269 (370)
439 PRK05708 2-dehydropantoate 2-r 32.9 2E+02 0.0043 30.2 8.6 102 294-410 3-106 (305)
440 PRK00094 gpsA NAD(P)H-dependen 32.8 2.8E+02 0.006 28.8 9.7 99 295-405 3-103 (325)
441 PRK08267 short chain dehydroge 32.7 3E+02 0.0066 27.3 9.6 40 294-334 2-44 (260)
442 KOG2078|consensus 32.7 26 0.00057 39.0 1.9 49 292-341 249-297 (495)
443 PRK07533 enoyl-(acyl carrier p 32.6 4.5E+02 0.0098 26.3 10.9 35 292-327 9-48 (258)
444 PF14740 DUF4471: Domain of un 32.1 97 0.0021 32.9 6.0 35 364-408 220-255 (289)
445 cd08263 Zn_ADH10 Alcohol dehyd 32.1 1.7E+02 0.0036 31.1 7.9 99 292-407 187-287 (367)
446 PRK07097 gluconate 5-dehydroge 32.0 4E+02 0.0087 26.6 10.4 45 292-337 9-56 (265)
447 PF07652 Flavi_DEAD: Flaviviru 31.8 3.7E+02 0.008 25.9 9.2 47 292-339 4-57 (148)
448 PRK08655 prephenate dehydrogen 31.8 3.2E+02 0.007 30.5 10.4 99 295-418 2-103 (437)
449 cd01842 SGNH_hydrolase_like_5 31.5 87 0.0019 31.1 5.1 47 364-410 48-102 (183)
450 PF05711 TylF: Macrocin-O-meth 31.3 2.3E+02 0.005 29.4 8.4 27 384-410 189-215 (248)
451 PF02826 2-Hacid_dh_C: D-isome 31.1 71 0.0015 30.8 4.5 103 292-419 35-143 (178)
452 PRK08324 short chain dehydroge 31.1 2.1E+02 0.0046 33.6 9.2 43 292-335 421-466 (681)
453 PRK06128 oxidoreductase; Provi 30.9 4.2E+02 0.0091 27.2 10.5 32 293-325 55-89 (300)
454 PRK07063 short chain dehydroge 30.9 3.5E+02 0.0077 26.8 9.7 44 292-336 6-52 (260)
455 cd08240 6_hydroxyhexanoate_dh_ 30.6 2E+02 0.0043 30.1 8.2 97 292-406 175-273 (350)
456 PRK12475 thiamine/molybdopteri 30.6 96 0.0021 33.5 5.8 33 293-325 24-58 (338)
457 PRK08762 molybdopterin biosynt 30.0 1.8E+02 0.0038 31.7 7.8 32 293-324 135-168 (376)
458 KOG0821|consensus 30.0 93 0.002 32.1 5.1 42 292-333 50-91 (326)
459 PRK12480 D-lactate dehydrogena 29.9 2.2E+02 0.0048 30.5 8.4 100 292-419 145-250 (330)
460 PF03446 NAD_binding_2: NAD bi 29.7 2.3E+02 0.005 26.7 7.7 90 295-409 3-96 (163)
461 KOG1269|consensus 29.6 72 0.0016 34.9 4.7 46 292-337 180-226 (364)
462 cd00650 LDH_MDH_like NAD-depen 29.6 3.4E+02 0.0073 27.8 9.4 86 316-410 27-121 (263)
463 KOG0023|consensus 29.4 1.9E+02 0.0041 31.4 7.5 98 291-408 180-280 (360)
464 PRK08306 dipicolinate synthase 29.4 1.6E+02 0.0034 31.1 7.0 87 292-406 151-240 (296)
465 PRK07688 thiamine/molybdopteri 29.2 1.1E+02 0.0023 33.1 5.9 33 293-325 24-58 (339)
466 PF06016 Reovirus_L2: Reovirus 28.1 97 0.0021 39.0 5.7 100 292-406 822-926 (1289)
467 PRK06129 3-hydroxyacyl-CoA deh 27.8 5.7E+02 0.012 26.8 11.0 40 295-335 4-45 (308)
468 PRK08818 prephenate dehydrogen 27.8 8.1E+02 0.017 26.9 12.3 88 293-417 4-98 (370)
469 PRK08507 prephenate dehydrogen 27.6 3.8E+02 0.0081 27.5 9.4 98 295-418 2-102 (275)
470 PRK15116 sulfur acceptor prote 27.6 3.3E+02 0.0071 28.6 8.9 35 292-326 29-65 (268)
471 cd08296 CAD_like Cinnamyl alco 27.5 2.2E+02 0.0049 29.6 7.9 93 292-407 163-259 (333)
472 PRK05872 short chain dehydroge 27.4 4E+02 0.0087 27.4 9.7 43 292-335 8-53 (296)
473 COG0677 WecC UDP-N-acetyl-D-ma 27.2 7.2E+02 0.016 27.9 11.6 135 293-431 9-157 (436)
474 cd08277 liver_alcohol_DH_like 27.2 2E+02 0.0044 30.5 7.6 100 292-407 184-286 (365)
475 PRK08277 D-mannonate oxidoredu 27.1 5.4E+02 0.012 25.8 10.4 43 292-335 9-54 (278)
476 cd08265 Zn_ADH3 Alcohol dehydr 26.8 1.8E+02 0.0039 31.3 7.1 102 292-406 203-306 (384)
477 cd08298 CAD2 Cinnamyl alcohol 26.2 2.8E+02 0.006 28.5 8.2 88 292-406 167-255 (329)
478 PRK07109 short chain dehydroge 26.1 4.5E+02 0.0097 27.8 9.9 43 293-336 8-53 (334)
479 cd05284 arabinose_DH_like D-ar 26.0 2E+02 0.0042 29.9 7.1 98 292-407 167-266 (340)
480 cd05298 GH4_GlvA_pagL_like Gly 25.9 6.9E+02 0.015 28.0 11.6 38 295-333 2-47 (437)
481 cd05286 QOR2 Quinone oxidoredu 25.9 2.6E+02 0.0057 27.9 7.8 97 292-406 136-234 (320)
482 PRK06505 enoyl-(acyl carrier p 25.6 5.8E+02 0.012 25.9 10.3 33 293-326 7-44 (271)
483 PF10237 N6-adenineMlase: Prob 25.6 4.7E+02 0.01 25.3 9.0 101 292-410 25-126 (162)
484 cd08291 ETR_like_1 2-enoyl thi 25.5 2.2E+02 0.0048 29.4 7.4 34 300-333 152-186 (324)
485 PRK03562 glutathione-regulated 25.3 5.1E+02 0.011 30.4 10.9 104 293-414 400-505 (621)
486 PRK06522 2-dehydropantoate 2-r 25.3 2.7E+02 0.0058 28.6 7.9 94 295-405 2-98 (304)
487 PRK05225 ketol-acid reductoiso 25.0 1.4E+02 0.003 34.0 5.8 88 292-406 35-130 (487)
488 cd08243 quinone_oxidoreductase 24.9 3.2E+02 0.0069 27.6 8.3 94 292-406 142-237 (320)
489 PRK07231 fabG 3-ketoacyl-(acyl 24.8 6.2E+02 0.013 24.6 10.1 42 293-335 5-49 (251)
490 cd08235 iditol_2_DH_like L-idi 24.6 2E+02 0.0043 29.8 6.9 98 292-406 165-264 (343)
491 cd05197 GH4_glycoside_hydrolas 24.5 7.6E+02 0.017 27.6 11.6 37 295-332 2-46 (425)
492 COG1179 Dinucleotide-utilizing 24.2 1.5E+02 0.0032 31.0 5.4 37 293-329 30-68 (263)
493 PRK07531 bifunctional 3-hydrox 24.1 6E+02 0.013 28.8 10.9 106 294-409 5-118 (495)
494 PRK09072 short chain dehydroge 24.0 6.1E+02 0.013 25.2 10.0 41 293-334 5-48 (263)
495 PRK11064 wecC UDP-N-acetyl-D-m 23.9 6.5E+02 0.014 27.8 10.9 107 294-407 4-119 (415)
496 PRK06181 short chain dehydroge 23.9 4.1E+02 0.0088 26.3 8.7 41 294-335 2-45 (263)
497 cd05283 CAD1 Cinnamyl alcohol 23.7 2.2E+02 0.0048 29.7 7.0 91 292-407 169-263 (337)
498 PRK13394 3-hydroxybutyrate deh 23.6 6.4E+02 0.014 24.7 10.0 44 293-337 7-53 (262)
499 PTZ00075 Adenosylhomocysteinas 23.6 2E+02 0.0043 32.8 6.8 97 292-418 253-353 (476)
500 PRK08594 enoyl-(acyl carrier p 23.4 6.7E+02 0.014 25.1 10.2 32 292-324 6-42 (257)
No 1
>KOG1975|consensus
Probab=100.00 E-value=1.3e-56 Score=456.25 Aligned_cols=298 Identities=42% Similarity=0.726 Sum_probs=263.9
Q ss_pred hhhhhHHHHHHHhccccccchhhccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcC
Q psy17742 235 EAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGG 314 (597)
Q Consensus 235 ~~~~~~~Va~hYn~~~~~~~~~R~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g 314 (597)
+.+.++.|++|||.+.+.++..|+.|+|++||+||||||++||+.|.+ ++..+||||||.|+++++|.++|
T Consensus 69 ~~~~~~~Va~HYN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~---------~~~~~~~LgCGKGGDLlKw~kAg 139 (389)
T KOG1975|consen 69 NESKSSEVAEHYNERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTK---------RGDDVLDLGCGKGGDLLKWDKAG 139 (389)
T ss_pred ccchhHHHHHHHHHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhc---------cccccceeccCCcccHhHhhhhc
Confidence 456789999999999999999999999999999999999999999998 67889999999999999999999
Q ss_pred CCEEEEEeCChHHHHHHHHHHHhhhhhcc-----ccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHH
Q psy17742 315 VKHVVFADIASVSIEDCKTRYEELKRKEE-----ARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCM 389 (597)
Q Consensus 315 ~~~V~GIDiS~~mIe~A~er~~~~~~~~~-----~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~ 389 (597)
+..++|+||++.+|++|++|+++...... ..++.+|.|...+.+.++.++.+||+|+|+|++||.|++++.++.+
T Consensus 140 I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~ 219 (389)
T KOG1975|consen 140 IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIA 219 (389)
T ss_pred ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHH
Confidence 99999999999999999999998766543 1223334444446666655544599999999999999999999999
Q ss_pred HHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCC--CCCCCcccceeeeccccccccccCCCHH
Q psy17742 390 LKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTS--RPPPLFGAKYDFNLEGVVNCPEFLVYFP 467 (597)
Q Consensus 390 L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~--d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e 467 (597)
|+|+.++|||||+||+|+|+++.|+++++......|||+||+|+|..... ...|+||.+|+|+|+++|+||||+|+++
T Consensus 220 l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~LedaVdcPEylV~F~ 299 (389)
T KOG1975|consen 220 LRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVDCPEYLVPFP 299 (389)
T ss_pred HHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCCCCccceEEEEcccccCCcceeeehH
Confidence 99999999999999999999999999999988889999999999875432 2368999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEEEecHHHHHHHhhcccchHHHHHHhhhccCCcccCCCHHHHHHHHhhceeEEEEcCCCC
Q psy17742 468 LLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKVKGKV 541 (597)
Q Consensus 468 ~L~~La~eaGfelV~~~~F~ef~~e~~~~~~~~~Ll~rM~~l~~~~~~g~Ls~~E~E~~~LY~~FvF~K~~~~~ 541 (597)
.|+.|++++||+||..++|.+||+++.+++.+..|+++|.+|+........+.+|||++++|.+|+++|..-+-
T Consensus 300 ~l~~lae~y~LeLv~~k~F~df~~e~~~~~~~~~Llkrm~gLe~~~~~~~~~~de~e~a~~~l~~~~~~~~ir~ 373 (389)
T KOG1975|consen 300 TLVSLAEEYGLELVFVKPFADFYEEELKKNEERELLKRMEGLECYPNEEGESGDEYEAASFYLTFFPEKDRIRY 373 (389)
T ss_pred HHHHHHHhcCcEEEEeccHHHHHHHhccccchhhHHHHHhcccCCCccccccchHHHHHHHHHhhhhhcccccc
Confidence 99999999999999999999999999988744499999999986544557999999999999999999876544
No 2
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=100.00 E-value=1.3e-54 Score=456.80 Aligned_cols=298 Identities=45% Similarity=0.796 Sum_probs=222.1
Q ss_pred hhhhhHHHHHHHhcccccc--chhhccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHh
Q psy17742 235 EAGLGQTVAEHYNQKKNVG--TELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWIN 312 (597)
Q Consensus 235 ~~~~~~~Va~hYn~~~~~~--~~~R~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~ 312 (597)
....++.|++|||.++..+ ...|..|+|++||+||||||++||+.+++.+.... ++.+|||||||.|+++.+|..
T Consensus 6 ~~~~~~~v~~hYn~~~~~~~~~~~R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~---~~~~VLDl~CGkGGDL~Kw~~ 82 (331)
T PF03291_consen 6 ESDVTDVVAEHYNQRPEVGIDLKERQESPIFHLRNFNNWVKSVLIQKYAKKVKQNR---PGLTVLDLCCGKGGDLQKWQK 82 (331)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHHHHHHCHCCCCTT---TT-EEEEET-TTTTTHHHHHH
T ss_pred cccHHHHHHHHHhccccccchhhhhhhChhHHHHHHhHHHHHHHHHHHHHhhhccC---CCCeEEEecCCCchhHHHHHh
Confidence 3457789999999998877 78899999999999999999999999998665443 678999999999999999999
Q ss_pred cCCCEEEEEeCChHHHHHHHHHHHhhhhhcc---------ccccccceeehhhhccCCCCCCceeEEEEccchhhhccCH
Q psy17742 313 GGVKHVVFADIASVSIEDCKTRYEELKRKEE---------ARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESV 383 (597)
Q Consensus 313 ~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~---------~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~ 383 (597)
.++..|+|+|||..+|+.|++|+........ ..++..+.|...+...++....+||+|.|+|+|||+|+++
T Consensus 83 ~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese 162 (331)
T PF03291_consen 83 AKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESE 162 (331)
T ss_dssp TT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSH
T ss_pred cCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCH
Confidence 9999999999999999999999955432211 1112233343335555666556899999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh----hccCccCCceEEEEecCCCCCCCCCcccceeeeccccc-c
Q psy17742 384 QQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR----HQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVV-N 458 (597)
Q Consensus 384 ~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~----~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~V-n 458 (597)
+.++.+|++++.+|+|||+||+|+|+++.|..+++. .....|||++|+|.|+.+ +..|.||.+|.|+|+++| +
T Consensus 163 ~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~--~~~~~fG~~Y~F~L~~~v~~ 240 (331)
T PF03291_consen 163 EKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD--DFFPPFGAKYDFYLEDAVDD 240 (331)
T ss_dssp HHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC--SS--CTTEEEEEEETTCSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc--CCCCCCCcEEEEEecCcCCC
Confidence 999999999999999999999999999999988887 456789999999999985 578899999999999999 9
Q ss_pred ccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccchHHHHHHhhhccCC-----------cccCCCHHHHHHHH
Q psy17742 459 CPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHH-----------KVGTLSKAEWEAIT 527 (597)
Q Consensus 459 ~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~~~~~~~~Ll~rM~~l~~~~-----------~~g~Ls~~E~E~~~ 527 (597)
||||||+++.|++||+++||++|+..+|++||+++.++.....|+++|.+++... ..++||++|||+++
T Consensus 241 ~~EYlV~~~~~~~la~eyGLeLV~~~~F~ef~~e~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~s~~ewea~~ 320 (331)
T PF03291_consen 241 CPEYLVPFDFFVKLAKEYGLELVEKKNFHEFYEEEKNKYEKRSLLERMKALEKRPGSYNDNEQKRISLGTLSKDEWEAAS 320 (331)
T ss_dssp EEEE---HHHHHHHHHHTTEEEEEEEEHHHHHHHHCCCCHCHHHHHCHGGG--SHHHHHHHHHHHHHCCSS-CCCHHHHC
T ss_pred CceEEeeHHHHHHHHHHcCCEEEEeCChHHHHHHhccCchhhHHHHHHHhhcCCCCcccchhhccccccCCCHHHHHHHH
Confidence 9999999999999999999999999999999999887755447999999887432 24689999999999
Q ss_pred -hhceeEEEEc
Q psy17742 528 -LYQVFAFEKV 537 (597)
Q Consensus 528 -LY~~FvF~K~ 537 (597)
||++|||+|.
T Consensus 321 ~lY~~F~F~K~ 331 (331)
T PF03291_consen 321 SLYLVFAFKKK 331 (331)
T ss_dssp TTEEEEEEEE-
T ss_pred hheEEEEEEeC
Confidence 9999999995
No 3
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.78 E-value=6.1e-18 Score=172.26 Aligned_cols=208 Identities=17% Similarity=0.262 Sum_probs=135.3
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++....+...... +...+..+..+...++||+|+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~-----~~~~d~~~l~~~~~~~fD~V~ 117 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELG-HQVILCDLSAEMIQRAKQAAEAKGVSDNMQ-----FIHCAAQDIAQHLETPVDLIL 117 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCccceE-----EEEcCHHHHhhhcCCCCCEEE
Confidence 46799999999999999999887 499999999999999999887655432221 333332221112235799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF 451 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F 451 (597)
|..++||+ .++..+|+++.++|||||+|++...+...+.....- .++ |+.. ....+ .....
T Consensus 118 ~~~vl~~~----~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~-----~~~------~~~~-~~~~~-~~~~~-- 178 (255)
T PRK11036 118 FHAVLEWV----ADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMV-----AGN------FDYV-QAGMP-KRKKR-- 178 (255)
T ss_pred ehhHHHhh----CCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHH-----ccC------hHHH-HhcCc-ccccc--
Confidence 99999998 667799999999999999999998887654221100 111 0000 00000 00000
Q ss_pred eccccccccccCCCHHHHHHHHHHcCCeEEEEE---ecHHHHHHHhhcccchHHHHHHhhhccCCcccCCCHHHHHHHHh
Q psy17742 452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE---NFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITL 528 (597)
Q Consensus 452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~---~F~ef~~e~~~~~~~~~Ll~rM~~l~~~~~~g~Ls~~E~E~~~L 528 (597)
. -.|.+.++++.+.++++++||+++... .|++|........ .+++++..++. ..-..+.+--++-
T Consensus 179 ~-----~~p~~~~~~~~l~~~l~~aGf~~~~~~gi~~~~~~~~~~~~~~---~~~~~~~~~e~----~~~~~~~~~~~~~ 246 (255)
T PRK11036 179 T-----LSPDYPLDPEQVYQWLEEAGWQIMGKTGVRVFHDYLRNKHQQR---DCFEALLELEQ----RYCRQEPYISLGR 246 (255)
T ss_pred C-----CCCCCCCCHHHHHHHHHHCCCeEeeeeeEEEEeeccCcccccc---chHHHHHHHHH----HHhcCCchhhhhh
Confidence 0 123456789999999999999999776 4666654433222 24455544441 1112244444578
Q ss_pred hceeEEEE
Q psy17742 529 YQVFAFEK 536 (597)
Q Consensus 529 Y~~FvF~K 536 (597)
|.+++++|
T Consensus 247 ~~h~~~~~ 254 (255)
T PRK11036 247 YIHVTARK 254 (255)
T ss_pred HheEEEeC
Confidence 99999987
No 4
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.76 E-value=4.5e-17 Score=171.80 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=111.1
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||||||+|.++..++..+ .+|+|||+|+.|++.|+.+.......... .+...+ .+.++...++||+|+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g-~~V~GID~s~~~i~~Ar~~~~~~~~~~~i-----~~~~~d-ae~l~~~~~~FD~Vi 203 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG-ATVTGVDAVDKNVKIARLHADMDPVTSTI-----EYLCTT-AEKLADEGRKFDAVL 203 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCcccce-----eEEecC-HHHhhhccCCCCEEE
Confidence 56799999999999999888877 49999999999999999875443221111 022222 233444446899999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF 451 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F 451 (597)
|..+|||+ .++..+|+++.++|||||.|++++++.........- .+ .-|...+ .+..++.+
T Consensus 204 ~~~vLeHv----~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i-----~~-~eyi~~~-------lp~gth~~-- 264 (322)
T PLN02396 204 SLEVIEHV----ANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTI-----VG-AEYILRW-------LPKGTHQW-- 264 (322)
T ss_pred EhhHHHhc----CCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhh-----hh-HHHHHhc-------CCCCCcCc--
Confidence 99999998 678899999999999999999999987532111000 00 0000000 01001111
Q ss_pred eccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742 452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR 487 (597)
Q Consensus 452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ 487 (597)
..+++++++.++++++||++++...+.
T Consensus 265 ---------~~f~tp~eL~~lL~~aGf~i~~~~G~~ 291 (322)
T PLN02396 265 ---------SSFVTPEELSMILQRASVDVKEMAGFV 291 (322)
T ss_pred ---------cCCCCHHHHHHHHHHcCCeEEEEeeeE
Confidence 125789999999999999999887654
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.75 E-value=1.1e-17 Score=168.89 Aligned_cols=204 Identities=20% Similarity=0.236 Sum_probs=136.7
Q ss_pred HhhhhhhHHHHHHHhccccccchhhccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHh
Q psy17742 233 NQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWIN 312 (597)
Q Consensus 233 ~~~~~~~~~Va~hYn~~~~~~~~~R~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~ 312 (597)
.....+++.|+..||... .+..+.....|- ..++..... +++.+|||||||||..+..+++
T Consensus 11 ~~v~~vF~~ia~~YD~~n----------~~~S~g~~~~Wr-~~~i~~~~~--------~~g~~vLDva~GTGd~a~~~~k 71 (238)
T COG2226 11 EKVQKVFDKVAKKYDLMN----------DLMSFGLHRLWR-RALISLLGI--------KPGDKVLDVACGTGDMALLLAK 71 (238)
T ss_pred HHHHHHHHhhHHHHHhhc----------ccccCcchHHHH-HHHHHhhCC--------CCCCEEEEecCCccHHHHHHHH
Confidence 345667888888887753 222333334562 223333222 2689999999999999999887
Q ss_pred c-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHH
Q psy17742 313 G-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLK 391 (597)
Q Consensus 313 ~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~ 391 (597)
. |..+|+|+|+|+.|++.|+++..+.+... . .|.....+.+|.++.+||+|++.++|+++ .+...+|+
T Consensus 72 ~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i------~fv~~dAe~LPf~D~sFD~vt~~fglrnv----~d~~~aL~ 140 (238)
T COG2226 72 SVGTGEVVGLDISESMLEVAREKLKKKGVQN-V------EFVVGDAENLPFPDNSFDAVTISFGLRNV----TDIDKALK 140 (238)
T ss_pred hcCCceEEEEECCHHHHHHHHHHhhccCccc-e------EEEEechhhCCCCCCccCEEEeeehhhcC----CCHHHHHH
Confidence 5 35699999999999999999988765543 2 34433455677777889999999999998 89999999
Q ss_pred HHHHhccCCcEEEEEeCCh---hHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccc-------ceeeeccccccccc
Q psy17742 392 NAAECLKPGGFFVGTVPDS---NQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGA-------KYDFNLEGVVNCPE 461 (597)
Q Consensus 392 ~i~rlLKPGG~fIit~pn~---~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~-------~Y~F~L~d~Vn~pE 461 (597)
+++|+|||||++++.-... ..+...+.... + + ...|.+|. .|. +|.+++ +
T Consensus 141 E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~---~-~------------~v~P~~g~~~~~~~~~y~-yL~eSi---~ 200 (238)
T COG2226 141 EMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYY---F-K------------YVLPLIGKLVAKDAEAYE-YLAESI---R 200 (238)
T ss_pred HHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHH---H-H------------hHhhhhceeeecChHHHH-HHHHHH---H
Confidence 9999999999988765444 12211111100 0 0 01122222 122 122222 2
Q ss_pred cCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742 462 FLVYFPLLERIAGEFGLKRILKENF 486 (597)
Q Consensus 462 Ylv~~e~L~~La~eaGfelV~~~~F 486 (597)
.....++|.++++++||+.+.+.++
T Consensus 201 ~~p~~~~l~~~~~~~gf~~i~~~~~ 225 (238)
T COG2226 201 RFPDQEELKQMIEKAGFEEVRYENL 225 (238)
T ss_pred hCCCHHHHHHHHHhcCceEEeeEee
Confidence 3567889999999999999885543
No 6
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.73 E-value=1.3e-17 Score=168.60 Aligned_cols=170 Identities=18% Similarity=0.175 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||+|||+|..+..+++. + ..+|+|+|+|+.|++.|+++....+.... .+.....+.++.++++||+
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i-------~~v~~da~~lp~~d~sfD~ 119 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNI-------EFVQGDAEDLPFPDNSFDA 119 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SE-------EEEE-BTTB--S-TT-EEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCe-------eEEEcCHHHhcCCCCceeE
Confidence 5789999999999999988764 2 35899999999999999999887654321 2333334456666678999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccc
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGA 447 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~ 447 (597)
|+|.|++|.+ +++.++|++++|+|||||.|++.-.+. ..+...+-.. +-..+ +.+-. .....-..
T Consensus 120 v~~~fglrn~----~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~----y~~~i--lP~~g---~l~~~~~~ 186 (233)
T PF01209_consen 120 VTCSFGLRNF----PDRERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKF----YFKYI--LPLIG---RLLSGDRE 186 (233)
T ss_dssp EEEES-GGG-----SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH---------------------------
T ss_pred EEHHhhHHhh----CCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeee----eeccc--ccccc---cccccccc
Confidence 9999999998 678899999999999999988654332 1222222110 00000 00000 00000001
Q ss_pred ceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742 448 KYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN 485 (597)
Q Consensus 448 ~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~ 485 (597)
.|. +|.+++. .+.+.+++.++++++||+.|...+
T Consensus 187 ~Y~-yL~~Si~---~f~~~~~~~~~l~~~Gf~~v~~~~ 220 (233)
T PF01209_consen 187 AYR-YLPESIR---RFPSPEELKELLEEAGFKNVEYRP 220 (233)
T ss_dssp --------------------------------------
T ss_pred ccc-ccccccc---cccccccccccccccccccccccc
Confidence 233 2333332 256788999999999999987654
No 7
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.71 E-value=2e-17 Score=165.40 Aligned_cols=158 Identities=18% Similarity=0.157 Sum_probs=116.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++++|||+|||.|.++..+++.| ..|+|+|+++.+|+.|+.+..+.+.... +.....+.+....++||+|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G-a~VtgiD~se~~I~~Ak~ha~e~gv~i~--------y~~~~~edl~~~~~~FDvV~ 129 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG-ASVTGIDASEKPIEVAKLHALESGVNID--------YRQATVEDLASAGGQFDVVT 129 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC-CeeEEecCChHHHHHHHHhhhhcccccc--------chhhhHHHHHhcCCCccEEE
Confidence 67999999999999999999999 5999999999999999999887766521 12222233434346899999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF 451 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F 451 (597)
|..+|+|+ +++..+++++.++|||||.++++++|.......+.-.. +..+.++ ++. -.+.|
T Consensus 130 cmEVlEHv----~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~----ae~vl~~-vP~--------gTH~~-- 190 (243)
T COG2227 130 CMEVLEHV----PDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIG----AEYVLRI-VPK--------GTHDY-- 190 (243)
T ss_pred EhhHHHcc----CCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHH----HHHHHHh-cCC--------cchhH--
Confidence 99999998 88899999999999999999999999865444332211 1111111 111 11112
Q ss_pred eccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742 452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF 486 (597)
Q Consensus 452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F 486 (597)
.-++.++++...+...|+++.....+
T Consensus 191 ---------~k~irp~El~~~~~~~~~~~~~~~g~ 216 (243)
T COG2227 191 ---------RKFIKPAELIRWLLGANLKIIDRKGL 216 (243)
T ss_pred ---------HHhcCHHHHHHhcccCCceEEeecce
Confidence 12578899999999999999877644
No 8
>PLN02244 tocopherol O-methyltransferase
Probab=99.69 E-value=4.4e-16 Score=165.53 Aligned_cols=226 Identities=16% Similarity=0.136 Sum_probs=134.2
Q ss_pred HhhhhhhHHHHHHHhccccccchhhccchh---hh----hhhhhhHHHHHHHHHHHhhcccC-CCCCCCCEEEEECCCCC
Q psy17742 233 NQEAGLGQTVAEHYNQKKNVGTELRKNSRI---VY----MRNFNNWTKSMLIDEFLTRCKSS-QPLGSPIKVLDMGSGKG 304 (597)
Q Consensus 233 ~~~~~~~~~Va~hYn~~~~~~~~~R~~S~i---~~----LR~fnnwvKs~LI~~~l~~l~~~-~~~~~~~rVLDLGCGtG 304 (597)
..+......|+.|||.....+...+..... +. ...+.. ....++...+..+... ....++.+|||||||+|
T Consensus 52 ~~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~~~~~~~~-aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G 130 (340)
T PLN02244 52 AATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRGDHRQ-AQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIG 130 (340)
T ss_pred cchhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCCCcccHHH-HHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCC
Confidence 334567778999998764332221111000 00 000111 1223445555443221 01135789999999999
Q ss_pred hhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHH
Q psy17742 305 GDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQ 384 (597)
Q Consensus 305 ~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~ 384 (597)
..+..+++....+|+|+|+|+.|++.|+++....+...... +...|. ..++...++||+|++..++||+ .
T Consensus 131 ~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~-----~~~~D~-~~~~~~~~~FD~V~s~~~~~h~----~ 200 (340)
T PLN02244 131 GSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVS-----FQVADA-LNQPFEDGQFDLVWSMESGEHM----P 200 (340)
T ss_pred HHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceE-----EEEcCc-ccCCCCCCCccEEEECCchhcc----C
Confidence 99999887533599999999999999999877655432221 333332 2344445689999999999998 6
Q ss_pred HHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeeeccccccccccCC
Q psy17742 385 QARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLV 464 (597)
Q Consensus 385 d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv 464 (597)
+...++++++++|||||+|++.......+...- ..+... .. .....+...| ..|. ..
T Consensus 201 d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~-----~~l~~~------~~---~~~~~i~~~~--------~~p~-~~ 257 (340)
T PLN02244 201 DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGE-----TSLKPD------EQ---KLLDKICAAY--------YLPA-WC 257 (340)
T ss_pred CHHHHHHHHHHHcCCCcEEEEEEeccccccccc-----ccCCHH------HH---HHHHHHHhhc--------cCCC-CC
Confidence 778999999999999999999764321110000 000000 00 0000000000 0111 24
Q ss_pred CHHHHHHHHHHcCCeEEEEEecHHHHHH
Q psy17742 465 YFPLLERIAGEFGLKRILKENFRSFYLR 492 (597)
Q Consensus 465 ~~e~L~~La~eaGfelV~~~~F~ef~~e 492 (597)
+.+.+.++++++||+.+....+..+...
T Consensus 258 s~~~~~~~l~~aGf~~v~~~d~s~~v~~ 285 (340)
T PLN02244 258 STSDYVKLAESLGLQDIKTEDWSEHVAP 285 (340)
T ss_pred CHHHHHHHHHHCCCCeeEeeeCcHHHHH
Confidence 7889999999999999999887766443
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.68 E-value=2.2e-15 Score=154.53 Aligned_cols=165 Identities=15% Similarity=0.143 Sum_probs=107.7
Q ss_pred CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhh--hccccccccceeehhhhccCCCCCCce
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKR--KEEARPYRRNVFSAELRSQYEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~--~~~~~~~~~d~F~~dl~e~l~~~~~sF 367 (597)
++.+|||||||+|..+..++.. + ..+|+|+|+|+.|++.|+++...... .... .+...+ ...++.++++|
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i-----~~~~~d-~~~lp~~~~sf 146 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNI-----EWIEGD-ATDLPFDDCYF 146 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCe-----EEEEcc-cccCCCCCCCE
Confidence 5689999999999998887764 3 25899999999999999987542111 1111 123333 23455555689
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH--HHHHHhhhccCccCCceEEEEecCCCCCCCCCc
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ--IMARYRRHQSASFGNDVYQVQCLFDTSRPPPLF 445 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~--i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~f 445 (597)
|+|++.+++|++ +++..+|++++++|||||+|++....... ....+... .+.. ..+++
T Consensus 147 D~V~~~~~l~~~----~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~---~~~~-------------~~~~~ 206 (261)
T PLN02233 147 DAITMGYGLRNV----VDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEW---MIDN-------------VVVPV 206 (261)
T ss_pred eEEEEecccccC----CCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHH---HHhh-------------hhhHH
Confidence 999999999998 67889999999999999999887655421 11111100 0000 00001
Q ss_pred cc------ceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742 446 GA------KYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF 486 (597)
Q Consensus 446 G~------~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F 486 (597)
+. .|.+ +...+ +.+++.+++.++++++||+.+....+
T Consensus 207 ~~~~~~~~~y~~-l~~s~---~~f~s~~el~~ll~~aGF~~~~~~~~ 249 (261)
T PLN02233 207 ATGYGLAKEYEY-LKSSI---NEYLTGEELEKLALEAGFSSAKHYEI 249 (261)
T ss_pred HHHhCChHHHHH-HHHHH---HhcCCHHHHHHHHHHCCCCEEEEEEc
Confidence 11 1111 11111 22678999999999999999876653
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.66 E-value=1.3e-15 Score=141.87 Aligned_cols=138 Identities=22% Similarity=0.306 Sum_probs=99.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||||||.|.++..+...+. +|+|+|+++.+++. .... ...+... ......++||+|+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--------~~~~------~~~~~~~---~~~~~~~~fD~i~ 83 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--------RNVV------FDNFDAQ---DPPFPDGSFDLII 83 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--------TTSE------EEEEECH---THHCHSSSEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--------hhhh------hhhhhhh---hhhccccchhhHh
Confidence 578999999999999999988886 99999999999988 0000 0122211 1112335799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH-HHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ-IMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD 450 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~-i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~ 450 (597)
|..+|||+ +++..+|+++.++|||||++++++++... ....+... .+ .. +..++
T Consensus 84 ~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~---~~---------~~------~~~~~--- 138 (161)
T PF13489_consen 84 CNDVLEHL----PDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKW---RY---------DR------PYGGH--- 138 (161)
T ss_dssp EESSGGGS----SHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHC---CG---------TC------HHTTT---
T ss_pred hHHHHhhc----ccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhc---CC---------cC------ccCce---
Confidence 99999999 78999999999999999999999998642 22211110 00 00 00011
Q ss_pred eeccccccccccCCCHHHHHHHHHHcCCeEEE
Q psy17742 451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRIL 482 (597)
Q Consensus 451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~ 482 (597)
..+++.+.|.++++++||++|+
T Consensus 139 ----------~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 139 ----------VHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp ----------TEEBBHHHHHHHHHHTTEEEEE
T ss_pred ----------eccCCHHHHHHHHHHCCCEEEE
Confidence 1246889999999999999986
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.64 E-value=1.8e-15 Score=133.51 Aligned_cols=110 Identities=25% Similarity=0.270 Sum_probs=83.3
Q ss_pred CCCEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
|+.+|||||||+|..+..+++ ....+|+|+|+|+.|++.|+++........+.. ++..++ ........+||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~-----~~~~d~-~~~~~~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRIT-----FVQGDA-EFDPDFLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEE-----EEESCC-HGGTTTSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeE-----EEECcc-ccCcccCCCCCEE
Confidence 468999999999999999988 234689999999999999999985544433331 444444 1112223469999
Q ss_pred EEcc-chhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 371 SCQF-CIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 371 i~~~-vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
++.+ ++++++.. ++...+|+.+.+.|+|||+|+++.+
T Consensus 75 ~~~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 75 ICSGFTLHFLLPL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp EECSGSGGGCCHH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred EECCCccccccch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 9999 66655333 7889999999999999999999763
No 12
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.63 E-value=3.1e-14 Score=144.31 Aligned_cols=105 Identities=16% Similarity=0.283 Sum_probs=84.1
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||+|||+|..+..+...+ .+|+|+|+|+.|++.|+++.... .+...+. +.++...++||+|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~~D~s~~~l~~a~~~~~~~-----------~~~~~d~-~~~~~~~~~fD~V~ 108 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG-SQVTALDLSPPMLAQARQKDAAD-----------HYLAGDI-ESLPLATATFDLAW 108 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCCCC-----------CEEEcCc-ccCcCCCCcEEEEE
Confidence 45789999999999998888776 59999999999999998874321 0333332 23344446799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i 413 (597)
+..++|++ .++..+|.++.++|||||.|+++++....+
T Consensus 109 s~~~l~~~----~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 146 (251)
T PRK10258 109 SNLAVQWC----GNLSTALRELYRVVRPGGVVAFTTLVQGSL 146 (251)
T ss_pred ECchhhhc----CCHHHHHHHHHHHcCCCeEEEEEeCCCCch
Confidence 99999998 778899999999999999999998776443
No 13
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.61 E-value=2.4e-15 Score=127.37 Aligned_cols=95 Identities=22% Similarity=0.274 Sum_probs=76.4
Q ss_pred EEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccch
Q psy17742 297 LDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCI 376 (597)
Q Consensus 297 LDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vL 376 (597)
||+|||+|..+..+++.+..+|+|+|+++.+++.++++....... +...+ ...++.++++||+|++..++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~---------~~~~d-~~~l~~~~~sfD~v~~~~~~ 70 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVS---------FRQGD-AEDLPFPDNSFDVVFSNSVL 70 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEE---------EEESB-TTSSSS-TT-EEEEEEESHG
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCch---------heeeh-HHhCccccccccccccccce
Confidence 899999999999999885579999999999999999987654332 22222 33456666789999999999
Q ss_pred hhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742 377 HYSFESVQQARCMLKNAAECLKPGGFFVG 405 (597)
Q Consensus 377 h~lFes~~d~~~~L~~i~rlLKPGG~fIi 405 (597)
||+ +++..+++++.|+|||||++++
T Consensus 71 ~~~----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 71 HHL----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred eec----cCHHHHHHHHHHHcCcCeEEeC
Confidence 998 8999999999999999999986
No 14
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.60 E-value=2.9e-14 Score=142.29 Aligned_cols=107 Identities=15% Similarity=0.190 Sum_probs=82.3
Q ss_pred CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.|+++........ . .++..+.. .++...++||+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-v-----~~~~~d~~-~~~~~~~~fD~ 117 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHN-V-----ELVHGNAM-ELPFDDNSFDY 117 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCc-e-----EEEEechh-cCCCCCCCccE
Confidence 5689999999999999988764 2 3589999999999999999876544321 1 13333322 23333467999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
|++.+++|++ ++...+|+++.++|+|||++++..+.
T Consensus 118 V~~~~~l~~~----~~~~~~l~~~~~~Lk~gG~l~~~~~~ 153 (231)
T TIGR02752 118 VTIGFGLRNV----PDYMQVLREMYRVVKPGGKVVCLETS 153 (231)
T ss_pred EEEecccccC----CCHHHHHHHHHHHcCcCeEEEEEECC
Confidence 9999999987 67789999999999999999886543
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.60 E-value=4.8e-14 Score=144.86 Aligned_cols=156 Identities=17% Similarity=0.230 Sum_probs=107.8
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++.... ... .+...+.. ..+.+.++||+|+
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~---~~i-----~~~~~D~~-~~~~~~~~FD~V~ 122 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKI-----EFEANDIL-KKDFPENTFDMIY 122 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC---Cce-----EEEECCcc-cCCCCCCCeEEEE
Confidence 67899999999999998887643359999999999999999886541 111 02233322 2233346799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH---HHHHhhhccCccCCceEEEEecCCCCCCCCCcccc
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI---MARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAK 448 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i---~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~ 448 (597)
+..+++|+ +..+...+|++++++|||||+|+++.+..... ...+..
T Consensus 123 s~~~l~h~--~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~----------------------------- 171 (263)
T PTZ00098 123 SRDAILHL--SYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKA----------------------------- 171 (263)
T ss_pred EhhhHHhC--CHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHH-----------------------------
Confidence 99988886 33478899999999999999999976532110 000000
Q ss_pred eeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHH
Q psy17742 449 YDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRK 493 (597)
Q Consensus 449 Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~ 493 (597)
| +... .-.+.+...+.++++++||+.+......+++...
T Consensus 172 ~---~~~~---~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~ 210 (263)
T PTZ00098 172 Y---IKKR---KYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLEL 210 (263)
T ss_pred H---HHhc---CCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHH
Confidence 0 0000 0014688899999999999999988766665443
No 16
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.56 E-value=5.5e-14 Score=148.54 Aligned_cols=156 Identities=21% Similarity=0.195 Sum_probs=103.1
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
.+.+|||||||+|.++..++..+...|+|+|+|+.|+..++......+..... .+...++ +.++. .++||+|+
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i-----~~~~~d~-e~lp~-~~~FD~V~ 194 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRA-----HLLPLGI-EQLPA-LKAFDTVF 194 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCe-----EEEeCCH-HHCCC-cCCcCEEE
Confidence 46899999999999999999888778999999999997655432221111111 1222222 33444 46799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF 451 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F 451 (597)
|..++||. .++..+|++++++|+|||.|++.+...+.- +... .+.. ..|.
T Consensus 195 s~~vl~H~----~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~------------~~~~---l~p~----------~~y~- 244 (322)
T PRK15068 195 SMGVLYHR----RSPLDHLKQLKDQLVPGGELVLETLVIDGD------------ENTV---LVPG----------DRYA- 244 (322)
T ss_pred ECChhhcc----CCHHHHHHHHHHhcCCCcEEEEEEEEecCC------------Cccc---cCch----------hHHh-
Confidence 99999997 678899999999999999999975321100 0000 0000 0010
Q ss_pred eccccccccccCCCHHHHHHHHHHcCCeEEEEEecHH
Q psy17742 452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRS 488 (597)
Q Consensus 452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~e 488 (597)
.+...-++.+...+..+++++||+.++......
T Consensus 245 ----~~~~~~~lps~~~l~~~L~~aGF~~i~~~~~~~ 277 (322)
T PRK15068 245 ----KMRNVYFIPSVPALKNWLERAGFKDVRIVDVSV 277 (322)
T ss_pred ----cCccceeCCCHHHHHHHHHHcCCceEEEEeCCC
Confidence 000001245788999999999999998775443
No 17
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.56 E-value=5.1e-14 Score=145.60 Aligned_cols=177 Identities=22% Similarity=0.246 Sum_probs=113.0
Q ss_pred HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh
Q psy17742 276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354 (597)
Q Consensus 276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~ 354 (597)
.+..++.++. .+++.+|||||||.|+.+..+++. | .+|+|+.+|++.++.|+++....+...... +...
T Consensus 50 k~~~~~~~~~----l~~G~~vLDiGcGwG~~~~~~a~~~g-~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~-----v~~~ 119 (273)
T PF02353_consen 50 KLDLLCEKLG----LKPGDRVLDIGCGWGGLAIYAAERYG-CHVTGITLSEEQAEYARERIREAGLEDRVE-----VRLQ 119 (273)
T ss_dssp HHHHHHTTTT------TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEE-----EEES
T ss_pred HHHHHHHHhC----CCCCCEEEEeCCCccHHHHHHHHHcC-cEEEEEECCHHHHHHHHHHHHhcCCCCceE-----EEEe
Confidence 3444444432 347899999999999999999887 6 499999999999999999998887654431 3333
Q ss_pred hhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEe
Q psy17742 355 ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQC 434 (597)
Q Consensus 355 dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F 434 (597)
|.. .++ .+||.|++..++.|+ ...+...+++.+.++|||||.+++.+.....-..........
T Consensus 120 D~~-~~~---~~fD~IvSi~~~Ehv--g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~----------- 182 (273)
T PF02353_consen 120 DYR-DLP---GKFDRIVSIEMFEHV--GRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSS----------- 182 (273)
T ss_dssp -GG-G------S-SEEEEESEGGGT--CGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCC-----------
T ss_pred ecc-ccC---CCCCEEEEEechhhc--ChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCc-----------
Confidence 322 232 379999999999887 446788999999999999999987655443222111100000
Q ss_pred cCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHhh
Q psy17742 435 LFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIK 495 (597)
Q Consensus 435 ~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~~ 495 (597)
.|=.+|.|- --++.+...+...+++.||+++.+.++...|..-..
T Consensus 183 ---------~~i~kyiFP-------gg~lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl~ 227 (273)
T PF02353_consen 183 ---------DFIRKYIFP-------GGYLPSLSEILRAAEDAGLEVEDVENLGRHYARTLR 227 (273)
T ss_dssp ---------HHHHHHTST-------TS---BHHHHHHHHHHTT-EEEEEEE-HHHHHHHHH
T ss_pred ---------eEEEEeeCC-------CCCCCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHHH
Confidence 011111110 013456788888999999999999999998876654
No 18
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.56 E-value=8.6e-14 Score=146.49 Aligned_cols=172 Identities=17% Similarity=0.145 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccccc
Q psy17742 270 NWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRR 349 (597)
Q Consensus 270 nwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~ 349 (597)
.|-.......++..+.. .++.+|||||||+|.++..++..|...|+|+|+|+.|+.+++............
T Consensus 103 e~~s~~~~~~~l~~l~~----~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v----- 173 (314)
T TIGR00452 103 EWRSDIKWDRVLPHLSP----LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRA----- 173 (314)
T ss_pred HHHHHHHHHHHHHhcCC----CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCe-----
Confidence 45444444555554322 256899999999999999888888778999999999998764322211111111
Q ss_pred ceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCce
Q psy17742 350 NVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDV 429 (597)
Q Consensus 350 d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~v 429 (597)
.+...++ +.++.. .+||+|+|..+++|. .++..+|++++++|||||.|++.+...+.- .+..
T Consensus 174 ~~~~~~i-e~lp~~-~~FD~V~s~gvL~H~----~dp~~~L~el~r~LkpGG~Lvletl~i~g~------------~~~~ 235 (314)
T TIGR00452 174 ILEPLGI-EQLHEL-YAFDTVFSMGVLYHR----KSPLEHLKQLKHQLVIKGELVLETLVIDGD------------LNTV 235 (314)
T ss_pred EEEECCH-HHCCCC-CCcCEEEEcchhhcc----CCHHHHHHHHHHhcCCCCEEEEEEEEecCc------------cccc
Confidence 0222222 233332 369999999999998 778899999999999999999976422100 0000
Q ss_pred EEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742 430 YQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF 486 (597)
Q Consensus 430 y~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F 486 (597)
. ... ..|. .+.-.-++.+...+..+++++||+.++....
T Consensus 236 l---~p~----------~ry~-----k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~ 274 (314)
T TIGR00452 236 L---VPK----------DRYA-----KMKNVYFIPSVSALKNWLEKVGFENFRILDV 274 (314)
T ss_pred c---Cch----------HHHH-----hccccccCCCHHHHHHHHHHCCCeEEEEEec
Confidence 0 000 0000 0000012457889999999999999987643
No 19
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.55 E-value=1e-13 Score=137.74 Aligned_cols=150 Identities=19% Similarity=0.141 Sum_probs=109.2
Q ss_pred EEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEc
Q psy17742 295 KVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQ 373 (597)
Q Consensus 295 rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~ 373 (597)
+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++....+...+.. ++..+.... +. .++||+|++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~-----~~~~d~~~~-~~-~~~fD~I~~~ 74 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIR-----IFYRDSAKD-PF-PDTYDLVFGF 74 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceE-----EEecccccC-CC-CCCCCEeehH
Confidence 69999999999999887653 3589999999999999999887655433221 333333222 22 2479999999
Q ss_pred cchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeeec
Q psy17742 374 FCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNL 453 (597)
Q Consensus 374 ~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L 453 (597)
.++||+ .++..+|++++++|||||+|++..+..+. +.. ... .
T Consensus 75 ~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~------------~~~------~~~-------~--------- 116 (224)
T smart00828 75 EVIHHI----KDKMDLFSNISRHLKDGGHLVLADFIANL------------LSA------IEH-------E--------- 116 (224)
T ss_pred HHHHhC----CCHHHHHHHHHHHcCCCCEEEEEEccccc------------Ccc------ccc-------c---------
Confidence 999998 66789999999999999999997653211 000 000 0
Q ss_pred cccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHH
Q psy17742 454 EGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRK 493 (597)
Q Consensus 454 ~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~ 493 (597)
....|+.+...+.++++++||+++...++..-|...
T Consensus 117 ----~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~~~~ 152 (224)
T smart00828 117 ----ETTSYLVTREEWAELLARNNLRVVEGVDASLEIANF 152 (224)
T ss_pred ----ccccccCCHHHHHHHHHHCCCeEEEeEECcHhHhhh
Confidence 011245778899999999999999998887766544
No 20
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.54 E-value=1.1e-13 Score=141.02 Aligned_cols=99 Identities=16% Similarity=0.261 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+|||||||+|.++..++... ..+|+|+|+|+.|++.|+++ .. .+...+.. .+. ..++||+|
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----~~---------~~~~~d~~-~~~-~~~~fD~v 93 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----GV---------DARTGDVR-DWK-PKPDTDVV 93 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----CC---------cEEEcChh-hCC-CCCCceEE
Confidence 56899999999999999888762 35899999999999999763 11 13344433 232 23579999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
+|+.++||+ .++..++++++++|||||+|++.++.
T Consensus 94 ~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 94 VSNAALQWV----PEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred EEehhhhhC----CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 999999998 67789999999999999999998764
No 21
>KOG1270|consensus
Probab=99.54 E-value=2.3e-14 Score=144.60 Aligned_cols=160 Identities=18% Similarity=0.073 Sum_probs=111.7
Q ss_pred CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC 372 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~ 372 (597)
+.+|||+|||+|.++..+++.| ++|+|||+++.||+.|+++............ .+..|.....+. ..++||+|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~-y~l~~~~~~~E~---~~~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLEGAIA-YRLEYEDTDVEG---LTGKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhccccc-eeeehhhcchhh---cccccceeee
Confidence 4789999999999999999999 5999999999999999998433332221100 001122212222 2356999999
Q ss_pred ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeee
Q psy17742 373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFN 452 (597)
Q Consensus 373 ~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~ 452 (597)
..+++|+ .++..+++.+.++|||||.+++++.+...+..... ..+...+.+|- |.-++
T Consensus 165 sevleHV----~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~----i~~~E~vl~iv---------p~Gth----- 222 (282)
T KOG1270|consen 165 SEVLEHV----KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGT----IFLAEIVLRIV---------PKGTH----- 222 (282)
T ss_pred HHHHHHH----hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhcc----ccHHHHHHHhc---------CCCCc-----
Confidence 9999998 99999999999999999999999998865543211 00111111111 11111
Q ss_pred ccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742 453 LEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN 485 (597)
Q Consensus 453 L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~ 485 (597)
..|-++.+.++..++...|+.+..+..
T Consensus 223 ------~~ekfi~p~e~~~~l~~~~~~v~~v~G 249 (282)
T KOG1270|consen 223 ------TWEKFINPEELTSILNANGAQVNDVVG 249 (282)
T ss_pred ------CHHHcCCHHHHHHHHHhcCcchhhhhc
Confidence 234568899999999999998886654
No 22
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.54 E-value=7.6e-14 Score=130.97 Aligned_cols=106 Identities=25% Similarity=0.361 Sum_probs=86.4
Q ss_pred CCCEEEEECCCCChhHHHHHh-cC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC--CCCCce
Q psy17742 292 SPIKVLDMGSGKGGDMLKWIN-GG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE--DKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~-~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~--~~~~sF 367 (597)
++.+|||||||+|.++..++. .+ ..+++|+|+|+.||+.|++++...+..... +...++.+ ++ .. ++|
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~------~~~~d~~~-l~~~~~-~~~ 74 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIE------FIQGDIED-LPQELE-EKF 74 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEE------EEESBTTC-GCGCSS-TTE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccc------eEEeehhc-cccccC-CCe
Confidence 568999999999999999984 32 468999999999999999988877665221 44455444 44 22 579
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
|+|++..++|++ .+...+|+++.++|++||.+++..+.
T Consensus 75 D~I~~~~~l~~~----~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHF----PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGT----SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhc----cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999999999998 78889999999999999999999888
No 23
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.52 E-value=5.2e-13 Score=134.62 Aligned_cols=107 Identities=18% Similarity=0.310 Sum_probs=81.8
Q ss_pred CCCEEEEECCCCChhHHHHHhc---CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING---GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~---g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD 368 (597)
++.+|||||||+|..+..+++. ...+|+|+|+|+.|++.|+++........+.. +...++. .++.+ .+|
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~-----~~~~d~~-~~~~~--~~d 124 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVE-----ILCNDIR-HVEIK--NAS 124 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeE-----EEECChh-hCCCC--CCC
Confidence 5679999999999999888763 23589999999999999999876543222111 3333322 33332 489
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
+|++.+++||+ +..+...+|++++++|||||.|+++.+
T Consensus 125 ~v~~~~~l~~~--~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 125 MVILNFTLQFL--PPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred EEeeecchhhC--CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 99999999997 445788999999999999999999854
No 24
>KOG1540|consensus
Probab=99.51 E-value=1.6e-13 Score=137.97 Aligned_cols=200 Identities=19% Similarity=0.267 Sum_probs=132.1
Q ss_pred hhhhHHHHHHHhccccccchhhccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc-C
Q psy17742 236 AGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING-G 314 (597)
Q Consensus 236 ~~~~~~Va~hYn~~~~~~~~~R~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~-g 314 (597)
...++.|+..||-.... ..+-..+-| |..++..+- +..+.+|||+|||+|..+..+++. +
T Consensus 63 ~~vF~~vA~~YD~mND~----------mSlGiHRlW-Kd~~v~~L~--------p~~~m~~lDvaGGTGDiaFril~~v~ 123 (296)
T KOG1540|consen 63 HHVFESVAKKYDIMNDA----------MSLGIHRLW-KDMFVSKLG--------PGKGMKVLDVAGGTGDIAFRILRHVK 123 (296)
T ss_pred HHHHHHHHHHHHHHHHH----------hhcchhHHH-HHHhhhccC--------CCCCCeEEEecCCcchhHHHHHHhhc
Confidence 56788888888764211 111111245 555544432 236799999999999999887653 2
Q ss_pred ------CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHH
Q psy17742 315 ------VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARC 388 (597)
Q Consensus 315 ------~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~ 388 (597)
..+|+++||++.||..+++|..+.+..... ...+.....+.+|+++.+||...+.|.|.+. .++.+
T Consensus 124 s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~----~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~----th~~k 195 (296)
T KOG1540|consen 124 SQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASS----RVEWVEGDAEDLPFDDDSFDAYTIAFGIRNV----THIQK 195 (296)
T ss_pred cccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCC----ceEEEeCCcccCCCCCCcceeEEEecceecC----CCHHH
Confidence 268999999999999999998765443321 0134433456677777889999999999887 78899
Q ss_pred HHHHHHHhccCCcEEEEEeCCh-h-HHHHHHhhhccCccCCceEEEEecCCCCCCCCCcc-------cceeeeccccccc
Q psy17742 389 MLKNAAECLKPGGFFVGTVPDS-N-QIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFG-------AKYDFNLEGVVNC 459 (597)
Q Consensus 389 ~L~~i~rlLKPGG~fIit~pn~-~-~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG-------~~Y~F~L~d~Vn~ 459 (597)
.|++++|+|||||+|.+-..+. + ..+..+..... | +..|..| ..|.| |.++|+
T Consensus 196 ~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ys--f--------------~VlpvlG~~iagd~~sYqY-LveSI~- 257 (296)
T KOG1540|consen 196 ALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYS--F--------------DVLPVLGEIIAGDRKSYQY-LVESIR- 257 (296)
T ss_pred HHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhh--h--------------hhhchhhHhhhhhHhhhhh-HHhhhh-
Confidence 9999999999999998766554 2 23333322110 0 0112222 12322 223332
Q ss_pred cccCCCHHHHHHHHHHcCCeEEE
Q psy17742 460 PEFLVYFPLLERIAGEFGLKRIL 482 (597)
Q Consensus 460 pEYlv~~e~L~~La~eaGfelV~ 482 (597)
.+-+-++|..+.+++||..+.
T Consensus 258 --rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 258 --RFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred --cCCCHHHHHHHHHHcCCcccc
Confidence 245678999999999999986
No 25
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.50 E-value=5.2e-13 Score=131.25 Aligned_cols=104 Identities=23% Similarity=0.254 Sum_probs=80.4
Q ss_pred CCCEEEEECCCCChhHHHHHhcCC--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGV--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||+|||+|..+..++.... .+++|+|+++.+++.++++.. .. ... .+...+..+ ++...++||+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~~--~~i-----~~~~~d~~~-~~~~~~~~D~ 109 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-LP--LNI-----EFIQADAEA-LPFEDNSFDA 109 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-cC--CCc-----eEEecchhc-CCCCCCcEEE
Confidence 568999999999999999887764 489999999999999998865 11 111 133333222 2233457999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
|++.+++|+. .++..+|+++.++|+|||+|++...
T Consensus 110 i~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 110 VTIAFGLRNV----TDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEEeeeeCCc----ccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999887 6788999999999999999987653
No 26
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.49 E-value=1e-12 Score=130.73 Aligned_cols=152 Identities=19% Similarity=0.154 Sum_probs=102.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.|++++......... .+...++. .++ ++||+|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~-~~v~gvD~s~~~i~~a~~~~~~~~~~~~i-----~~~~~d~~-~~~---~~fD~ii 124 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNV-----EFEVNDLL-SLC---GEFDIVV 124 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCce-----EEEECChh-hCC---CCcCEEE
Confidence 57899999999999999998876 49999999999999999988654432111 13333322 222 5699999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH-HHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ-IMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD 450 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~-i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~ 450 (597)
+..+++|. +..++..+++++.+++++|+++.+....... ....+.. .++ ..
T Consensus 125 ~~~~l~~~--~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~---------~~------------- 176 (219)
T TIGR02021 125 CMDVLIHY--PASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGE----LFP---------GS------------- 176 (219)
T ss_pred EhhHHHhC--CHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHh----hCc---------Cc-------------
Confidence 99998875 3456888999999999877666553222111 1111111 010 00
Q ss_pred eeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742 451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF 486 (597)
Q Consensus 451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F 486 (597)
....+-+.++.+.+.++++++||+++....+
T Consensus 177 -----~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~ 207 (219)
T TIGR02021 177 -----SRATSAYLHPMTDLERALGELGWKIVREGLV 207 (219)
T ss_pred -----ccccceEEecHHHHHHHHHHcCceeeeeecc
Confidence 0001123568899999999999999987643
No 27
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.49 E-value=5.4e-13 Score=147.46 Aligned_cols=158 Identities=20% Similarity=0.178 Sum_probs=107.8
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++....... . .+...++.. .+.+.++||+|+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~--v-----~~~~~d~~~-~~~~~~~fD~I~ 337 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCS--V-----EFEVADCTK-KTYPDNSFDVIY 337 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCc--e-----EEEEcCccc-CCCCCCCEEEEE
Confidence 56899999999999988887653358999999999999999876432211 1 133344322 222335799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF 451 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F 451 (597)
|..+++|+ .++..+|++++++|||||.|+++.+....... . +.+. .+
T Consensus 338 s~~~l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-----------~---------------~~~~-~~-- 384 (475)
T PLN02336 338 SRDTILHI----QDKPALFRSFFKWLKPGGKVLISDYCRSPGTP-----------S---------------PEFA-EY-- 384 (475)
T ss_pred ECCccccc----CCHHHHHHHHHHHcCCCeEEEEEEeccCCCCC-----------c---------------HHHH-HH--
Confidence 99999998 67889999999999999999998653210000 0 0000 00
Q ss_pred eccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHh
Q psy17742 452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKI 494 (597)
Q Consensus 452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~ 494 (597)
+.. .--.+.+...+.++++++||+++....+.+-|....
T Consensus 385 -~~~---~g~~~~~~~~~~~~l~~aGF~~i~~~d~~~~~~~~~ 423 (475)
T PLN02336 385 -IKQ---RGYDLHDVQAYGQMLKDAGFDDVIAEDRTDQFLQVL 423 (475)
T ss_pred -HHh---cCCCCCCHHHHHHHHHHCCCeeeeeecchHHHHHHH
Confidence 000 001245778899999999999998877666554443
No 28
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.48 E-value=6e-15 Score=128.20 Aligned_cols=97 Identities=23% Similarity=0.351 Sum_probs=62.2
Q ss_pred EEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC-CCCceeEEEEcc
Q psy17742 297 LDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED-KALELDLVSCQF 374 (597)
Q Consensus 297 LDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~-~~~sFDvVi~~~ 374 (597)
||||||+|.++..++.. ...+|+|+|+|+.|++.|++++......... .+.....+.+.. ..++||+|++.+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFE------RLRFDVLDLFDYDPPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EE------EEE--SSS---CCC----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCccee------EEEeecCChhhcccccccceehhhh
Confidence 89999999999998776 3359999999999999999888776543211 222211111111 114799999999
Q ss_pred chhhhccCHHHHHHHHHHHHHhccCCcEE
Q psy17742 375 CIHYSFESVQQARCMLKNAAECLKPGGFF 403 (597)
Q Consensus 375 vLh~lFes~~d~~~~L~~i~rlLKPGG~f 403 (597)
++||+ +++..+|++++++|||||+|
T Consensus 75 vl~~l----~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHL----EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS------S-HHHHHHHHTTT-TSS-EE
T ss_pred hHhhh----hhHHHHHHHHHHHcCCCCCC
Confidence 99998 88889999999999999986
No 29
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.48 E-value=2.9e-13 Score=133.14 Aligned_cols=103 Identities=21% Similarity=0.312 Sum_probs=80.2
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.|+++....+..... ....++. .++. .++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~------~~~~d~~-~~~~-~~~fD~I~ 100 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLH------TAVVDLN-NLTF-DGEYDFIL 100 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcce------EEecChh-hCCc-CCCcCEEE
Confidence 457899999999999999998874 9999999999999999887665432111 2223322 2222 24699999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG 405 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi 405 (597)
|.+++||+ +..+...+++++.++|||||++++
T Consensus 101 ~~~~~~~~--~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 101 STVVLMFL--EAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EecchhhC--CHHHHHHHHHHHHHHcCCCcEEEE
Confidence 99999886 456789999999999999999655
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.47 E-value=3.9e-13 Score=136.66 Aligned_cols=106 Identities=19% Similarity=0.344 Sum_probs=81.3
Q ss_pred CCCEEEEECCCCChhHHHHHhc---CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING---GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~---g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD 368 (597)
++.+|||||||+|..+..++.. ...+|+|+|+|+.|++.|++++...+...... +...+.. .++.. .+|
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~-----~~~~d~~-~~~~~--~~D 127 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVD-----VIEGDIR-DIAIE--NAS 127 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeE-----EEeCChh-hCCCC--CCC
Confidence 5689999999999998877652 33599999999999999999987654332221 3333322 33332 499
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+|++.+++|++ +..+...++++++++|||||.|+++.
T Consensus 128 ~vv~~~~l~~l--~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 128 MVVLNFTLQFL--EPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred EEehhhHHHhC--CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 99999999997 34567899999999999999999875
No 31
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=7.1e-13 Score=136.69 Aligned_cols=165 Identities=20% Similarity=0.182 Sum_probs=120.3
Q ss_pred CCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 290 LGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 290 ~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
.++|.+|||||||.|..+..+++....+|+|+++|+++.+.+++++...+...+.. +... .+.+-.++||-
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~-----v~l~----d~rd~~e~fDr 140 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVE-----VRLQ----DYRDFEEPFDR 140 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccE-----EEec----cccccccccce
Confidence 34899999999999999999988754599999999999999999999887763321 2222 23333356999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccce
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKY 449 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y 449 (597)
|++..+++|+ ..+....+|+.++++|+|||.+++-+.....-.. . ..+.|=.+|
T Consensus 141 IvSvgmfEhv--g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~----------~--------------~~~~~i~~y 194 (283)
T COG2230 141 IVSVGMFEHV--GKENYDDFFKKVYALLKPGGRMLLHSITGPDQEF----------R--------------RFPDFIDKY 194 (283)
T ss_pred eeehhhHHHh--CcccHHHHHHHHHhhcCCCceEEEEEecCCCccc----------c--------------cchHHHHHh
Confidence 9999999998 5567999999999999999999876543311000 0 011122222
Q ss_pred eeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc
Q psy17742 450 DFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKE 496 (597)
Q Consensus 450 ~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~~~ 496 (597)
.|- --++-+...+.+.+.++||.+.....|...|..-...
T Consensus 195 iFP-------gG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~ 234 (283)
T COG2230 195 IFP-------GGELPSISEILELASEAGFVVLDVESLRPHYARTLRL 234 (283)
T ss_pred CCC-------CCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHH
Confidence 211 0134567888899999999999999999888766554
No 32
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.47 E-value=1.8e-12 Score=128.83 Aligned_cols=106 Identities=19% Similarity=0.204 Sum_probs=80.9
Q ss_pred CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||+|||+|..+..++..+ ..+|+|+|+++.+++.++++....+..... .+...+.. .++...++||+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~-----~~~~~d~~-~~~~~~~~~D~ 124 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNV-----EFVQGDAE-ALPFPDNSFDA 124 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCe-----EEEecccc-cCCCCCCCccE
Confidence 46899999999999999888765 369999999999999999987653222111 12333322 22233457999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|++.+++|+. .+...+|+++.++|+|||.+++..
T Consensus 125 I~~~~~l~~~----~~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 125 VTIAFGLRNV----PDIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred EEEecccccC----CCHHHHHHHHHHhccCCcEEEEEE
Confidence 9999999887 678899999999999999998754
No 33
>PRK05785 hypothetical protein; Provisional
Probab=99.45 E-value=1.4e-12 Score=131.22 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||||||+|..+..+++....+|+|+|+|+.|++.|+++.. ....+ .+.++..+++||+|+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~--------------~~~~d-~~~lp~~d~sfD~v~ 115 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADD--------------KVVGS-FEALPFRDKSFDVVM 115 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccc--------------eEEec-hhhCCCCCCCEEEEE
Confidence 357999999999999998887632489999999999999986421 22222 233555567899999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCc
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGG 401 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG 401 (597)
+.+++||+ .++..+|++++|+|||++
T Consensus 116 ~~~~l~~~----~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 116 SSFALHAS----DNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred ecChhhcc----CCHHHHHHHHHHHhcCce
Confidence 99999997 788899999999999953
No 34
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.45 E-value=2.6e-12 Score=128.63 Aligned_cols=157 Identities=17% Similarity=0.093 Sum_probs=104.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||||||+|..+..+.+.+ .+++|+|+++.+++.|+++........ .+...+.........++||+|+
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~fD~Ii 119 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLG-ADVTGIDASEENIEVARLHALESGLKI-------DYRQTTAEELAAEHPGQFDVVT 119 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC-CeEEEEcCCHHHHHHHHHHHHHcCCce-------EEEecCHHHhhhhcCCCccEEE
Confidence 57899999999999998888776 489999999999999998876543311 1223332222112235799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF 451 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F 451 (597)
+..+++++ .+...+|+++.++|+|||.++++.++............. ..+.. + .+..+.
T Consensus 120 ~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~----~~~~~--~-------~~~~~~---- 178 (233)
T PRK05134 120 CMEMLEHV----PDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGA----EYVLR--M-------LPKGTH---- 178 (233)
T ss_pred EhhHhhcc----CCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhH----HHHhh--h-------cCcccC----
Confidence 99999887 677889999999999999999988765322111000000 00000 0 000000
Q ss_pred eccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742 452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE 484 (597)
Q Consensus 452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~ 484 (597)
....+++.+++.++++++||+++...
T Consensus 179 -------~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 179 -------DYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred -------chhhcCCHHHHHHHHHHCCCeEeeee
Confidence 00124678889999999999999775
No 35
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.44 E-value=8.3e-13 Score=129.75 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=79.1
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.++++....+.... ....++. .++.. ++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~-------~~~~d~~-~~~~~-~~fD~I~ 99 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLR-------TDAYDIN-AAALN-EDYDFIF 99 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCce-------eEeccch-hcccc-CCCCEEE
Confidence 357899999999999999998874 999999999999999988765443211 2222221 12222 4699999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
+..++|++ +.++...++++++++|||||++++.
T Consensus 100 ~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 100 STVVFMFL--QAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EecccccC--CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 99999886 4467889999999999999996653
No 36
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.43 E-value=9.6e-12 Score=123.68 Aligned_cols=154 Identities=18% Similarity=0.164 Sum_probs=100.6
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||||||+|.++..++..+. .|+|+|+|+.|++.|++++...+..... .+...+ ++...++||+|+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i-----~~~~~d----~~~~~~~fD~v~ 132 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNI-----TFEVGD----LESLLGRFDTVV 132 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCc-----EEEEcC----chhccCCcCEEE
Confidence 467999999999999999988775 7999999999999999987665432111 133333 222235799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF 451 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F 451 (597)
+..++||. +.++...+++++.+.+++|+. +. .............. + . .|... .
T Consensus 133 ~~~~l~~~--~~~~~~~~l~~l~~~~~~~~~-i~-~~~~~~~~~~~~~l-----~-~----~~~~~--------~----- 185 (230)
T PRK07580 133 CLDVLIHY--PQEDAARMLAHLASLTRGSLI-FT-FAPYTPLLALLHWI-----G-G----LFPGP--------S----- 185 (230)
T ss_pred EcchhhcC--CHHHHHHHHHHHHhhcCCeEE-EE-ECCccHHHHHHHHh-----c-c----ccCCc--------c-----
Confidence 99999875 345778899999987754443 33 32222222111110 0 0 00000 0
Q ss_pred eccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742 452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR 487 (597)
Q Consensus 452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ 487 (597)
...+-+.++...+.++++.+||++++...+.
T Consensus 186 -----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 216 (230)
T PRK07580 186 -----RTTRIYPHREKGIRRALAAAGFKVVRTERIS 216 (230)
T ss_pred -----CCCCccccCHHHHHHHHHHCCCceEeeeecc
Confidence 0011234678899999999999999987654
No 37
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.43 E-value=3.1e-13 Score=118.20 Aligned_cols=96 Identities=28% Similarity=0.377 Sum_probs=72.7
Q ss_pred EEEECCCCChhHHHHHhcC---C-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 296 VLDMGSGKGGDMLKWINGG---V-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 296 VLDLGCGtG~~l~~la~~g---~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
|||+|||+|..+..+.... . .+++|+|+|+.||+.++++....+... .++..|.. .++...++||+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~-------~~~~~D~~-~l~~~~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKV-------RFVQADAR-DLPFSDGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTS-------EEEESCTT-CHHHHSSSEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCce-------EEEECCHh-HCcccCCCeeEEE
Confidence 7999999999999987653 2 699999999999999999987644321 14555533 2444456899999
Q ss_pred Eccc-hhhhccCHHHHHHHHHHHHHhccCCc
Q psy17742 372 CQFC-IHYSFESVQQARCMLKNAAECLKPGG 401 (597)
Q Consensus 372 ~~~v-Lh~lFes~~d~~~~L~~i~rlLKPGG 401 (597)
|.+. +||+ +.++...+|+++.++|||||
T Consensus 73 ~~~~~~~~~--~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 73 CSGLSLHHL--SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp E-TTGGGGS--SHHHHHHHHHHHHHTEEEEE
T ss_pred EcCCccCCC--CHHHHHHHHHHHHHHhCCCC
Confidence 9655 9996 67789999999999999998
No 38
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.43 E-value=4.7e-12 Score=125.58 Aligned_cols=161 Identities=17% Similarity=0.162 Sum_probs=106.5
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
.+.+|||+|||+|.++..++..+. .++|+|+++.+++.++++........ . .+...+..+......++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~-~-----~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLK-I-----EYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCc-e-----EEEeCCHHHhhcCCCCCccEEE
Confidence 468999999999999998887764 79999999999999998876543311 1 0222222222112135799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF 451 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F 451 (597)
+..++|++ .++..+|+++.++|+|||.+++..++............ ...+.... +..+..+
T Consensus 118 ~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~----~~~~~~~~---------~~~~~~~-- 178 (224)
T TIGR01983 118 CMEVLEHV----PDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVG----AEYILRIV---------PKGTHDW-- 178 (224)
T ss_pred ehhHHHhC----CCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHh----hhhhhhcC---------CCCcCCh--
Confidence 99999987 67789999999999999999998876542111100000 00000000 0000000
Q ss_pred eccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742 452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR 487 (597)
Q Consensus 452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ 487 (597)
..+++.+.+.++++++||++++...+.
T Consensus 179 ---------~~~~~~~~l~~~l~~~G~~i~~~~~~~ 205 (224)
T TIGR01983 179 ---------EKFIKPSELTSWLESAGLRVKDVKGLV 205 (224)
T ss_pred ---------hhcCCHHHHHHHHHHcCCeeeeeeeEE
Confidence 113577889999999999999877543
No 39
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.42 E-value=2.4e-12 Score=136.80 Aligned_cols=146 Identities=17% Similarity=0.146 Sum_probs=101.7
Q ss_pred CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|+++...... .+...+. ..++...++||+|
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i---------~~i~gD~-e~lp~~~~sFDvV 182 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKEC---------KIIEGDA-EDLPFPTDYADRY 182 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCC---------eEEeccH-HhCCCCCCceeEE
Confidence 5679999999999988887654 335899999999999999987542111 1333332 2334444679999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh-hHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccce
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS-NQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKY 449 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~-~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y 449 (597)
++..++|+. .+...+|++++++|||||.+++..+.. .....+. +. . .+
T Consensus 183 Is~~~L~~~----~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~-------~~---------~-----------~~ 231 (340)
T PLN02490 183 VSAGSIEYW----PDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRF-------FA---------D-----------VW 231 (340)
T ss_pred EEcChhhhC----CCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHH-------hh---------h-----------hh
Confidence 999999987 566789999999999999998764321 1111000 00 0 00
Q ss_pred eeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHH
Q psy17742 450 DFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSF 489 (597)
Q Consensus 450 ~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef 489 (597)
. .....+++.++++++||+.++...+...
T Consensus 232 ~-----------~~~t~eEl~~lL~~aGF~~V~i~~i~~~ 260 (340)
T PLN02490 232 M-----------LFPKEEEYIEWFTKAGFKDVKLKRIGPK 260 (340)
T ss_pred c-----------cCCCHHHHHHHHHHCCCeEEEEEEcChh
Confidence 0 0235788999999999999998876543
No 40
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.42 E-value=6.6e-12 Score=135.75 Aligned_cols=157 Identities=20% Similarity=0.157 Sum_probs=109.2
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||||||+|..+..+++....+|+|+|+|+.+++.|+++....... +...+.. .+ .++||+|+
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~---------~~~~D~~-~l---~~~fD~Iv 233 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVE---------IRLQDYR-DL---NGQFDRIV 233 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEE---------EEECchh-hc---CCCCCEEE
Confidence 67899999999999999888753359999999999999999987432110 2222221 12 25799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF 451 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F 451 (597)
+..+++|+ ...++..+++.+.++|||||++++..+...... . ....|-.+|.|
T Consensus 234 s~~~~ehv--g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~-----~--------------------~~~~~i~~yif 286 (383)
T PRK11705 234 SVGMFEHV--GPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTD-----T--------------------NVDPWINKYIF 286 (383)
T ss_pred EeCchhhC--ChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC-----C--------------------CCCCCceeeec
Confidence 99999886 345678999999999999999999865432100 0 00111122222
Q ss_pred eccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc
Q psy17742 452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKE 496 (597)
Q Consensus 452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~~~ 496 (597)
- --++.+...+.++++ .||++.....|...|......
T Consensus 287 p-------~g~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL~~ 323 (383)
T PRK11705 287 P-------NGCLPSVRQIAQASE-GLFVMEDWHNFGADYDRTLMA 323 (383)
T ss_pred C-------CCcCCCHHHHHHHHH-CCcEEEEEecChhhHHHHHHH
Confidence 1 012456677777655 699999999999999766654
No 41
>PRK06202 hypothetical protein; Provisional
Probab=99.41 E-value=1.8e-12 Score=130.06 Aligned_cols=158 Identities=11% Similarity=0.071 Sum_probs=97.5
Q ss_pred CCCEEEEECCCCChhHHHHHh----cC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCc
Q psy17742 292 SPIKVLDMGSGKGGDMLKWIN----GG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALE 366 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~----~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~s 366 (597)
++.+|||||||+|.++..++. .| ..+|+|+|+|+.|++.|+++....+.... .... ..++...++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-------~~~~---~~l~~~~~~ 129 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFR-------QAVS---DELVAEGER 129 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEE-------EEec---ccccccCCC
Confidence 567999999999998877653 23 24899999999999999887543322110 1111 122223467
Q ss_pred eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHH-hhhccCccCCceEEEEecCCCCCCCCCc
Q psy17742 367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARY-RRHQSASFGNDVYQVQCLFDTSRPPPLF 445 (597)
Q Consensus 367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l-~~~~~~~fgN~vy~I~F~~~~~d~~p~f 445 (597)
||+|+|++++||+ ..++...+|+++.++++ |.+++...........+ .......+.+.+.. .
T Consensus 130 fD~V~~~~~lhh~--~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~----~--------- 192 (232)
T PRK06202 130 FDVVTSNHFLHHL--DDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVH----T--------- 192 (232)
T ss_pred ccEEEECCeeecC--ChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceee----c---------
Confidence 9999999999997 33456789999999998 44444444432221111 11000001011110 0
Q ss_pred ccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742 446 GAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF 486 (597)
Q Consensus 446 G~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F 486 (597)
+....-...++.+++.+++++ ||++.....|
T Consensus 193 ---------d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 193 ---------DGLLSVRRSYTPAELAALAPQ-GWRVERQWPF 223 (232)
T ss_pred ---------cchHHHHhhcCHHHHHHHhhC-CCeEEeccce
Confidence 001111235788999999999 9999887665
No 42
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.41 E-value=1.5e-12 Score=133.59 Aligned_cols=106 Identities=22% Similarity=0.264 Sum_probs=80.4
Q ss_pred CCCEEEEECCCCChhHHHHHhc-CC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-GV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||||||+|.++..++.. +. .+|+|+|+++.|++.|+++....+... . .+...++ ..++...++||+
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~-v-----~~~~~d~-~~l~~~~~~fD~ 149 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN-V-----EFRLGEI-EALPVADNSVDV 149 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC-E-----EEEEcch-hhCCCCCCceeE
Confidence 6789999999999987765543 32 479999999999999999876554321 1 1333332 234444467999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
|++..++|+. .+...+|+++.++|||||+|++...
T Consensus 150 Vi~~~v~~~~----~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 150 IISNCVINLS----PDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred EEEcCcccCC----CCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 9999999887 5677899999999999999998643
No 43
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.41 E-value=6.4e-12 Score=122.69 Aligned_cols=157 Identities=15% Similarity=0.185 Sum_probs=112.4
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFDvV 370 (597)
++.+|||||||.|.++..+........+|+|++++.+..|.++.-. ..+.|+.+.+. .++++||.|
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~-------------Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVS-------------VIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCC-------------EEECCHHHhHhhCCCCCccEE
Confidence 7899999999999999998875556899999999999988876321 45555444432 344679999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD 450 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~ 450 (597)
+++.+|.++ ..+..+|+++.|+ |...|+++||.-.+..++.-.-. |. .+.. +. ..|.
T Consensus 80 IlsqtLQ~~----~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~---Gr------mPvt--~~-----lPy~ 136 (193)
T PF07021_consen 80 ILSQTLQAV----RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLR---GR------MPVT--KA-----LPYE 136 (193)
T ss_pred ehHhHHHhH----hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhc---CC------CCCC--CC-----CCCc
Confidence 999999888 8888898888555 77999999999877776643200 00 0000 01 1133
Q ss_pred eeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHH
Q psy17742 451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRS 488 (597)
Q Consensus 451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~e 488 (597)
++ +.-| -.+.+...|++++++.|+++++...+..
T Consensus 137 WY--dTPN--ih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 137 WY--DTPN--IHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred cc--CCCC--cccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 33 1111 1367899999999999999999886654
No 44
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.41 E-value=1.5e-12 Score=132.44 Aligned_cols=102 Identities=19% Similarity=0.338 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+|||||||+|.++..++... ..+|+|+|+|+.|++.|++++... .+...+.....+ ..+||+|
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~-----------~~~~~d~~~~~~--~~~fD~v 97 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDC-----------QFVEADIASWQP--PQALDLI 97 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCC-----------eEEECchhccCC--CCCccEE
Confidence 56899999999999998887653 468999999999999999875321 133333332222 2479999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+++.++||+ .+...+|+++.++|||||.|++.+++.
T Consensus 98 ~~~~~l~~~----~d~~~~l~~~~~~LkpgG~~~~~~~~~ 133 (258)
T PRK01683 98 FANASLQWL----PDHLELFPRLVSLLAPGGVLAVQMPDN 133 (258)
T ss_pred EEccChhhC----CCHHHHHHHHHHhcCCCcEEEEECCCC
Confidence 999999998 677899999999999999999987653
No 45
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.40 E-value=1.2e-11 Score=130.36 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=97.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||||||+|.++..+++.| .+|+|+|+|+.|++.|++++......... .....+...++. .+ .++||+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~~~~-~~~~~f~~~Dl~-~l---~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAALPP-EVLPKFEANDLE-SL---SGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhccccccc-ccceEEEEcchh-hc---CCCcCEEE
Confidence 46799999999999999999887 48999999999999999987654211000 000012333322 22 35799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF 451 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F 451 (597)
|..+++|+ ..+....+++.+.+ +.+||.++...++. .....+.. ++. .|.. .+ .
T Consensus 218 ~~~vL~H~--p~~~~~~ll~~l~~-l~~g~liIs~~p~~-~~~~~l~~-----~g~-----~~~g-----~~--~----- 271 (315)
T PLN02585 218 CLDVLIHY--PQDKADGMIAHLAS-LAEKRLIISFAPKT-LYYDILKR-----IGE-----LFPG-----PS--K----- 271 (315)
T ss_pred EcCEEEec--CHHHHHHHHHHHHh-hcCCEEEEEeCCcc-hHHHHHHH-----HHh-----hcCC-----CC--c-----
Confidence 99998775 22345567887775 45666655444432 11111111 111 0111 00 0
Q ss_pred eccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742 452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE 484 (597)
Q Consensus 452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~ 484 (597)
....|+++.++++++++++||+++...
T Consensus 272 ------~~r~y~~s~eel~~lL~~AGf~v~~~~ 298 (315)
T PLN02585 272 ------ATRAYLHAEADVERALKKAGWKVARRE 298 (315)
T ss_pred ------CceeeeCCHHHHHHHHHHCCCEEEEEE
Confidence 011245789999999999999998654
No 46
>PRK08317 hypothetical protein; Provisional
Probab=99.40 E-value=6.4e-12 Score=124.18 Aligned_cols=106 Identities=22% Similarity=0.209 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||+|||+|.++..++... ..+|+|+|+++.+++.|+++....... . .+...+. ..++...++||+
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~--~-----~~~~~d~-~~~~~~~~~~D~ 90 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPN--V-----EFVRGDA-DGLPFPDGSFDA 90 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCc--e-----EEEeccc-ccCCCCCCCceE
Confidence 57899999999999999887653 358999999999999999873221111 1 0222222 222333467999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
|++..+++|+ .++..+++++.++|||||++++..++
T Consensus 91 v~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 91 VRSDRVLQHL----EDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred EEEechhhcc----CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 9999999998 67889999999999999999998764
No 47
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.39 E-value=2.1e-12 Score=134.18 Aligned_cols=103 Identities=23% Similarity=0.301 Sum_probs=80.7
Q ss_pred CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC 372 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~ 372 (597)
+.+|||||||+|..+..++..|. +|+|+|+|+.+++.++++....+.... ....++.. ... .++||+|++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~-------~~~~D~~~-~~~-~~~fD~I~~ 190 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIR-------TGLYDINS-ASI-QEEYDFILS 190 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceE-------EEEechhc-ccc-cCCccEEEE
Confidence 45899999999999999998874 999999999999999988776544211 22223222 111 357999999
Q ss_pred ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 373 ~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
..++|++ +.++...+++++.++|+|||++++..
T Consensus 191 ~~vl~~l--~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 191 TVVLMFL--NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cchhhhC--CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999987 45688899999999999999977643
No 48
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.38 E-value=3.1e-12 Score=125.66 Aligned_cols=104 Identities=24% Similarity=0.334 Sum_probs=80.2
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.++||||||.|+.+..++..|. .|+++|+|+..++.+++.....+.... ....|+... ..+ +.||+|+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l~i~-------~~~~Dl~~~-~~~-~~yD~I~ 99 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGLDIR-------TRVADLNDF-DFP-EEYDFIV 99 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT-TEE-------EEE-BGCCB-S-T-TTEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCceeE-------EEEecchhc-ccc-CCcCEEE
Confidence 467999999999999999999997 899999999999999887766655432 334444332 222 4699999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+..+++|+ +.+....+++++...++|||++++.+
T Consensus 100 st~v~~fL--~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 100 STVVFMFL--QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EESSGGGS---GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEeccC--CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 99899887 56778899999999999999988844
No 49
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.37 E-value=8.8e-12 Score=111.17 Aligned_cols=104 Identities=15% Similarity=0.073 Sum_probs=76.6
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|+++....+..... ++..+....++....+||+|
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~D~v 92 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIV------IVEGDAPEALEDSLPEPDRV 92 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceE------EEeccccccChhhcCCCCEE
Confidence 45799999999999999988753 368999999999999999887665432211 33332221122222479999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
++..+.+ ....+++.+.++|||||+|++++.
T Consensus 93 ~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 93 FIGGSGG-------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred EECCcch-------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 9976553 345899999999999999999864
No 50
>KOG2361|consensus
Probab=99.36 E-value=7.6e-12 Score=125.14 Aligned_cols=188 Identities=19% Similarity=0.257 Sum_probs=122.6
Q ss_pred hhhccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCC---CEEEEEeCChHHHHHH
Q psy17742 255 ELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGV---KHVVFADIASVSIEDC 331 (597)
Q Consensus 255 ~~R~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~---~~V~GIDiS~~mIe~A 331 (597)
+...+.+++..| +| |..++-..+..... ...+||+||||.|..+..+++... -.|+++|.|+.+|+..
T Consensus 43 y~~~~~rFfkdR---~w----L~~Efpel~~~~~~--~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~v 113 (264)
T KOG2361|consen 43 YKIHENRFFKDR---NW----LLREFPELLPVDEK--SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELV 113 (264)
T ss_pred hhhccccccchh---HH----HHHhhHHhhCcccc--ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHH
Confidence 333455555555 78 66777665544321 223899999999999988876532 3799999999999999
Q ss_pred HHHHHhhhhhccccccccceeehhhhc---cCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 332 KTRYEELKRKEEARPYRRNVFSAELRS---QYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 332 ~er~~~~~~~~~~~~~~~d~F~~dl~e---~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
+++......... .|..|+.. .-+...+++|+|++.|+|..+ +.+.+..++++++++|||||.+++.-.
T Consensus 114 k~~~~~~e~~~~-------afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi--~pek~~~a~~nl~~llKPGG~llfrDY 184 (264)
T KOG2361|consen 114 KKSSGYDESRVE-------AFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI--HPEKMQSVIKNLRTLLKPGGSLLFRDY 184 (264)
T ss_pred Hhccccchhhhc-------ccceeccchhccCCCCcCccceEEEEEEEecc--ChHHHHHHHHHHHHHhCCCcEEEEeec
Confidence 886543332211 33333221 122335789999999999887 678999999999999999999999765
Q ss_pred ChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742 409 DSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE 484 (597)
Q Consensus 409 n~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~ 484 (597)
....+.. ++-.. +....- .|++. .-..+-|+++.+.|.+++.++||..+...
T Consensus 185 g~~Dlaq-lRF~~-----~~~i~~-----------------nfYVR-gDGT~~YfF~~eeL~~~f~~agf~~~~~~ 236 (264)
T KOG2361|consen 185 GRYDLAQ-LRFKK-----GQCISE-----------------NFYVR-GDGTRAYFFTEEELDELFTKAGFEEVQLE 236 (264)
T ss_pred ccchHHH-HhccC-----Cceeec-----------------ceEEc-cCCceeeeccHHHHHHHHHhcccchhccc
Confidence 5533221 11100 111110 01110 00234477889999999999999888643
No 51
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.35 E-value=7.8e-12 Score=123.89 Aligned_cols=107 Identities=20% Similarity=0.325 Sum_probs=83.6
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
.+.+|||||||+|.++..++..+ ..+++|+|+++.+++.++++... .. .+...++. .++...++||+|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~-----~~-----~~~~~d~~-~~~~~~~~fD~v 102 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSE-----NV-----QFICGDAE-KLPLEDSSFDLI 102 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCC-----CC-----eEEecchh-hCCCCCCceeEE
Confidence 35789999999999999888765 34689999999999999887652 11 13333322 233334579999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i 413 (597)
++.+++||+ .++..+|.++.++|+|||+|++..+....+
T Consensus 103 i~~~~l~~~----~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~ 141 (240)
T TIGR02072 103 VSNLALQWC----DDLSQALSELARVLKPGGLLAFSTFGPGTL 141 (240)
T ss_pred EEhhhhhhc----cCHHHHHHHHHHHcCCCcEEEEEeCCccCH
Confidence 999999998 678899999999999999999998776543
No 52
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.35 E-value=1.8e-11 Score=126.93 Aligned_cols=154 Identities=18% Similarity=0.137 Sum_probs=104.4
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh-hhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA-ELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~-dl~e~l~~~~~sFDvV 370 (597)
.+.+|||||||.|.++..++..|.+.|+|+|.+....-+...-..-.+.... .+.. ...+.++. .+.||+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~-------~~~lplgvE~Lp~-~~~FDtV 186 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPP-------VFELPLGVEDLPN-LGAFDTV 186 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCcc-------EEEcCcchhhccc-cCCcCEE
Confidence 5789999999999999999999998999999999887664432221211111 1221 12344555 4689999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD 450 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~ 450 (597)
+|.++|-|. .++...|++++..|+|||.+|+.+.--+ |+.-..+ ++.. ......+.
T Consensus 187 F~MGVLYHr----r~Pl~~L~~Lk~~L~~gGeLvLETlvi~--------------g~~~~~L-~P~~---rYa~m~nv-- 242 (315)
T PF08003_consen 187 FSMGVLYHR----RSPLDHLKQLKDSLRPGGELVLETLVID--------------GDENTVL-VPED---RYAKMRNV-- 242 (315)
T ss_pred EEeeehhcc----CCHHHHHHHHHHhhCCCCEEEEEEeeec--------------CCCceEE-ccCC---cccCCCce--
Confidence 999999887 8889999999999999999999764321 1111111 1110 00000011
Q ss_pred eeccccccccccCCCHHHHHHHHHHcCCeEEEEEecH
Q psy17742 451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFR 487 (597)
Q Consensus 451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ 487 (597)
=|+-+...|...++++||+-|+.-.-.
T Consensus 243 ----------~FiPs~~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 243 ----------WFIPSVAALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred ----------EEeCCHHHHHHHHHHcCCceEEEecCc
Confidence 134578899999999999999876443
No 53
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.34 E-value=3e-11 Score=126.58 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC--CCCC--C
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY--EDKA--L 365 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l--~~~~--~ 365 (597)
++.+|||+|||+|..+..+++.. ..+|+|+|+|+.||+.|++++.......... .+..|+.+.+ +... .
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~-----~i~gD~~~~~~~~~~~~~~ 137 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVH-----GICADFTQPLALPPEPAAG 137 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEE-----EEEEcccchhhhhcccccC
Confidence 45789999999999999888764 2589999999999999999876532111111 2333332222 1110 1
Q ss_pred ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
...++++..+++++ +.++...+|++++++|+|||.|++.+.
T Consensus 138 ~~~~~~~gs~~~~~--~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 138 RRLGFFPGSTIGNF--TPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred CeEEEEecccccCC--CHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 23344444567775 467888999999999999999998663
No 54
>KOG4300|consensus
Probab=99.34 E-value=4.4e-12 Score=124.17 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=85.6
Q ss_pred CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCceeEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELDLVS 371 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFDvVi 371 (597)
...||++|||+|.....+-...+.+|+++|+++.|-+.|.+++.+....... .|.....+.++ .+++++|+|+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~------~fvva~ge~l~~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVE------RFVVADGENLPQLADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceE------EEEeechhcCcccccCCeeeEE
Confidence 3568999999999887766455569999999999999999998877443322 35544444454 3457899999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
|.++|+-. +++.+.|+++.++|||||++++.-.-.
T Consensus 151 ~TlvLCSv----e~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 151 CTLVLCSV----EDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred EEEEEecc----CCHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 99999776 899999999999999999999875443
No 55
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.31 E-value=1.9e-11 Score=119.66 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=100.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFDvV 370 (597)
++.+|||||||+|.++..++......++|+|+|+.+++.|+++ +.. +...++...++ ...++||+|
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----~~~---------~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----GVN---------VIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----CCe---------EEEEEhhhcccccCCCCcCEE
Confidence 4679999999999999888765445789999999999988652 111 22333322221 234579999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD 450 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~ 450 (597)
+|..++||+ .++..+|+++.+.+ |.+++++|+.........-.. +.... +.. .. .|.
T Consensus 80 i~~~~l~~~----~d~~~~l~e~~r~~---~~~ii~~p~~~~~~~~~~~~~----~~~~~---~~~----~~-----~~~ 136 (194)
T TIGR02081 80 ILSQTLQAT----RNPEEILDEMLRVG---RHAIVSFPNFGYWRVRWSILT----KGRMP---VTG----EL-----PYD 136 (194)
T ss_pred EEhhHhHcC----cCHHHHHHHHHHhC---CeEEEEcCChhHHHHHHHHHh----CCccc---cCC----CC-----Ccc
Confidence 999999998 67888888887765 456777777644332221100 00000 000 00 010
Q ss_pred eeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHH
Q psy17742 451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRS 488 (597)
Q Consensus 451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~e 488 (597)
+. +. .+..+++.+.+.++++++||++++...+..
T Consensus 137 ~~--~~--~~~~~~s~~~~~~ll~~~Gf~v~~~~~~~~ 170 (194)
T TIGR02081 137 WY--NT--PNIHFCTIADFEDLCGELNLRILDRAAFDV 170 (194)
T ss_pred cc--CC--CCcccCcHHHHHHHHHHCCCEEEEEEEecc
Confidence 00 00 112357899999999999999999887643
No 56
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.29 E-value=1.5e-11 Score=126.59 Aligned_cols=112 Identities=20% Similarity=0.308 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCChh----HHHHHhcC------CCEEEEEeCChHHHHHHHHHHHh-hhhhcc-----c-----------
Q psy17742 292 SPIKVLDMGSGKGGD----MLKWINGG------VKHVVFADIASVSIEDCKTRYEE-LKRKEE-----A----------- 344 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~----l~~la~~g------~~~V~GIDiS~~mIe~A~er~~~-~~~~~~-----~----------- 344 (597)
++.+|||+|||+|.- +..+++.+ ..+|+|+|+|+.||+.|++..-. ...... .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 458999999999973 33333321 24899999999999999985311 000000 0
Q ss_pred -c--cccccee-ehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 345 -R--PYRRNVF-SAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 345 -~--~~~~d~F-~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
. ......| ..++... +...++||+|+|.++|||+ +.++..+++++++++|+|||+|++.
T Consensus 179 v~~~ir~~V~F~~~dl~~~-~~~~~~fD~I~crnvl~yf--~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 179 VKPELKERVRFAKHNLLAE-SPPLGDFDLIFCRNVLIYF--DEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred EChHHhCcCEEeeccCCCC-CCccCCCCEEEechhHHhC--CHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 0 0000122 2233322 2234679999999999997 4567789999999999999999985
No 57
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.28 E-value=1.8e-11 Score=121.06 Aligned_cols=122 Identities=14% Similarity=0.044 Sum_probs=85.8
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC--CCCCcee
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE--DKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~--~~~~sFD 368 (597)
++.+|||||||+|..+..++... ..+|+|+|+|+.|++.|+++....+..... +...+....++ ...++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~------~~~~d~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLR------LLCGDAVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEE------EEecCHHHHHHHHcCccccc
Confidence 46789999999999999887653 358999999999999999987665432111 33333312222 2235799
Q ss_pred EEEEccchhhhcc-C---HHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742 369 LVSCQFCIHYSFE-S---VQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR 419 (597)
Q Consensus 369 vVi~~~vLh~lFe-s---~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~ 419 (597)
+|++.+...+... + ......+|+++.++|||||+|++.+++...+...+..
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~ 168 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEV 168 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHH
Confidence 9999876543210 0 0124679999999999999999999888766554443
No 58
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.28 E-value=4e-11 Score=119.01 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+|||||||+|..+..+... +..+++|+|+|+.|++.|++++... .+...++..++ ..++||+|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~-----------~~~~~d~~~~~--~~~sfD~V 109 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNI-----------NIIQGSLFDPF--KDNFFDLV 109 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCC-----------cEEEeeccCCC--CCCCEEEE
Confidence 4578999999999999988775 3468999999999999998865321 13334433333 34679999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
++..++||+ +.+++..+++++.+++ ++++++..
T Consensus 110 ~~~~vL~hl--~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 110 LTKGVLIHI--NPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred EECChhhhC--CHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 999999997 4567899999999998 45666654
No 59
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.28 E-value=3.7e-11 Score=117.81 Aligned_cols=103 Identities=21% Similarity=0.251 Sum_probs=77.8
Q ss_pred CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+|||||||+|..+..++.. ...+|+|+|+++.|++.|+++....+... .. +...+..+ +.. .++||+|
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~-----~~~~d~~~-~~~-~~~fDlV 116 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VT-----VVHGRAEE-FGQ-EEKFDVV 116 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EE-----EEeccHhh-CCC-CCCccEE
Confidence 4689999999999998887753 34699999999999999999888766532 21 33333322 333 4579999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
++.. + .++..+++.++++|||||+|++.....
T Consensus 117 ~~~~-~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 117 TSRA-V-------ASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred EEcc-c-------cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 9964 2 345689999999999999999886543
No 60
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.27 E-value=1.2e-10 Score=112.34 Aligned_cols=106 Identities=17% Similarity=0.173 Sum_probs=78.1
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.++++....+... .+...+..... .++||+|+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-------~~~~~d~~~~~---~~~fD~Vi 87 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGL-------DVVMTDLFKGV---RGKFDVIL 87 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCce-------EEEEccccccc---CCcccEEE
Confidence 457899999999999999988875 89999999999999999876543321 12333332222 24799999
Q ss_pred EccchhhhccC-----------------HHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 372 CQFCIHYSFES-----------------VQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 372 ~~~vLh~lFes-----------------~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
++..+|+.-.. ..-...+|+++.++|||||.+++...
T Consensus 88 ~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 88 FNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred ECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 99777654110 11256789999999999999988654
No 61
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.27 E-value=3.5e-11 Score=120.25 Aligned_cols=113 Identities=12% Similarity=0.062 Sum_probs=77.6
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh------ccccccccceeehhhhccCCCCCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK------EEARPYRRNVFSAELRSQYEDKAL 365 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~------~~~~~~~~d~F~~dl~e~l~~~~~ 365 (597)
++.+|||+|||.|.++..++..|. .|+|+|+|+.+|+.+.+........ .........++..|+.+.-....+
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 457999999999999999999996 8999999999999864422110000 000000001334443221111124
Q ss_pred ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+||+|+...++||+ +.+....+++.+.++|||||++++.+
T Consensus 113 ~fD~i~D~~~~~~l--~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 113 PVDAVYDRAALIAL--PEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CcCEEEechhhccC--CHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 69999999888887 56778889999999999999866654
No 62
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.27 E-value=9.9e-11 Score=117.42 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=76.4
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh------ccccccccceeehhhhccCCCCCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK------EEARPYRRNVFSAELRSQYEDKAL 365 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~------~~~~~~~~d~F~~dl~e~l~~~~~ 365 (597)
++.+|||+|||.|.++..++..|. +|+|+|+|+.+|+.+.......... .........++..|+....+...+
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 457999999999999999999986 8999999999999875321110000 000000001333443322111224
Q ss_pred ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742 366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG 405 (597)
Q Consensus 366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi 405 (597)
.||+|+...++|++ +.+....+++.+.++|+|||++++
T Consensus 116 ~fd~v~D~~~~~~l--~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIAL--PEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhC--CHHHHHHHHHHHHHHcCCCCeEEE
Confidence 69999999999887 567889999999999999997554
No 63
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.26 E-value=9.3e-11 Score=119.58 Aligned_cols=96 Identities=22% Similarity=0.225 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|+++....+... .+. +.....+||+|+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~--------~~~------~~~~~~~fD~Vv 184 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVEL--------NVY------LPQGDLKADVIV 184 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCc--------eEE------EccCCCCcCEEE
Confidence 578999999999999988888776679999999999999999876654321 111 111112699999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
++... .....++.++.++|||||+|+++..
T Consensus 185 ani~~-------~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 185 ANILA-------NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred EcCcH-------HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 97543 3456789999999999999999743
No 64
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.25 E-value=7.6e-11 Score=117.21 Aligned_cols=148 Identities=18% Similarity=0.174 Sum_probs=98.9
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
...+.||+|+|.|+.+..++..-+.+|..+|+.+..++.|++........ .+.+|..++.+..| ..++||+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~------v~~~~~~gLQ~f~P-~~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPR------VGEFYCVGLQDFTP-EEGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCC------EEEEEES-GGG-----TT-EEEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCC------cceEEecCHhhccC-CCCcEeEEE
Confidence 46799999999999999877666789999999999999999876552222 23477776654444 346899999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF 451 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F 451 (597)
+++++.|+ +.+++..+|+.+...|+|||++++---... -+. ..|+.+
T Consensus 128 ~QW~lghL--TD~dlv~fL~RCk~~L~~~G~IvvKEN~~~-------------~~~----~~~D~~-------------- 174 (218)
T PF05891_consen 128 IQWCLGHL--TDEDLVAFLKRCKQALKPNGVIVVKENVSS-------------SGF----DEFDEE-------------- 174 (218)
T ss_dssp EES-GGGS---HHHHHHHHHHHHHHEEEEEEEEEEEEEES-------------SSE----EEEETT--------------
T ss_pred ehHhhccC--CHHHHHHHHHHHHHhCcCCcEEEEEecCCC-------------CCC----cccCCc--------------
Confidence 99999998 888999999999999999999998421110 000 122221
Q ss_pred eccccccccccCCCHHHHHHHHHHcCCeEEEEEec
Q psy17742 452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENF 486 (597)
Q Consensus 452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F 486 (597)
..+|. -+.+.++++++++||+++....-
T Consensus 175 --DsSvT-----Rs~~~~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 175 --DSSVT-----RSDEHFRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp --TTEEE-----EEHHHHHHHHHHCT-EEEEEEE-
T ss_pred --cCeee-----cCHHHHHHHHHHcCCEEEEeccc
Confidence 01121 24578999999999999987643
No 65
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.25 E-value=1.6e-10 Score=112.69 Aligned_cols=99 Identities=16% Similarity=0.257 Sum_probs=73.2
Q ss_pred CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
+.+|||+|||+|..+..++..+ ..+|+|+|+|+.|++.++++....+..+.. +...+..+ +.. .++||+|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~------~i~~d~~~-~~~-~~~fD~I~ 114 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVE------IVNGRAED-FQH-EEQFDVIT 114 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeE------EEecchhh-ccc-cCCccEEE
Confidence 6799999999999888876543 358999999999999999887665443211 33444332 322 35799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+.. +++ ...+++.+.++|+|||.+++..
T Consensus 115 s~~-~~~-------~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 115 SRA-LAS-------LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ehh-hhC-------HHHHHHHHHHhcCCCCEEEEEc
Confidence 875 433 3467888999999999999864
No 66
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.24 E-value=3.8e-11 Score=117.69 Aligned_cols=105 Identities=17% Similarity=0.260 Sum_probs=79.9
Q ss_pred CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC 372 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~ 372 (597)
-.++||+|||.|.++..++... ..++++|+|+..|+.|++|....... .+...++.+.+|. ++||+|++
T Consensus 44 y~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~Ar~Rl~~~~~V--------~~~~~dvp~~~P~--~~FDLIV~ 112 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARARERLAGLPHV--------EWIQADVPEFWPE--GRFDLIVL 112 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHHHHHTTT-SSE--------EEEES-TTT---S--S-EEEEEE
T ss_pred cceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHHHHhcCCCCCe--------EEEECcCCCCCCC--CCeeEEEE
Confidence 4689999999999999998876 69999999999999999998765321 1445555555554 67999999
Q ss_pred ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 373 ~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
..+++|+ .+.+++..++.++...|+|||.||+....
T Consensus 113 SEVlYYL-~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 113 SEVLYYL-DDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp ES-GGGS-SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ehHhHcC-CCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 9999997 55678999999999999999999998764
No 67
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.24 E-value=1.1e-10 Score=112.31 Aligned_cols=111 Identities=23% Similarity=0.279 Sum_probs=83.6
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCC-EEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVK-HVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~-~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
+..+|||+|||+|..+..++..+.. +|+++|+++.+++.|+++....+... . .++..|+.+.++ .++||+|
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v-----~~~~~d~~~~~~--~~~fD~I 102 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-V-----EVVQSDLFEALP--DGKFDLI 102 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-E-----EEEESSTTTTCC--TTCEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-c-----cccccccccccc--ccceeEE
Confidence 4678999999999999998887643 79999999999999999988776653 1 145555555555 3579999
Q ss_pred EEccchhhhcc-CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 371 SCQFCIHYSFE-SVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 371 i~~~vLh~lFe-s~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+|+-.+|.... ...-...+++.+.++|||||.|++.....
T Consensus 103 v~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 103 VSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp EE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred EEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 99977665421 12347899999999999999998766554
No 68
>KOG1541|consensus
Probab=99.24 E-value=3.2e-11 Score=119.22 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=94.3
Q ss_pred HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh
Q psy17742 276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE 355 (597)
Q Consensus 276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d 355 (597)
+....+..+..... .+.-|||||||+|.-...+...| ..++|+|||+.|++.|.++--+ ++....|
T Consensus 36 m~eRaLELLalp~~--~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e-----------gdlil~D 101 (270)
T KOG1541|consen 36 MAERALELLALPGP--KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE-----------GDLILCD 101 (270)
T ss_pred HHHHHHHHhhCCCC--CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh-----------cCeeeee
Confidence 44444444433211 35789999999999998888888 5899999999999999974222 2366667
Q ss_pred hhccCCCCCCceeEEEEccchhhhcc-------CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 356 LRSQYEDKALELDLVSCQFCIHYSFE-------SVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 356 l~e~l~~~~~sFDvVi~~~vLh~lFe-------s~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+.+.+|+..++||.||+..++.|++- +...+..|+..++.+|++|+..++.+.-.
T Consensus 102 MG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 102 MGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred cCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 78899999999999999988888762 33456788999999999999999987544
No 69
>PRK06922 hypothetical protein; Provisional
Probab=99.23 E-value=6.1e-11 Score=133.93 Aligned_cols=108 Identities=21% Similarity=0.208 Sum_probs=81.0
Q ss_pred CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC--CCCCcee
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE--DKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~--~~~~sFD 368 (597)
++.+|||||||+|..+..++.. ...+|+|+|+|+.|++.|+++....+... .+...+... ++ ..+++||
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~i-------e~I~gDa~d-Lp~~fedeSFD 489 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSW-------NVIKGDAIN-LSSSFEKESVD 489 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCe-------EEEEcchHh-CccccCCCCEE
Confidence 4689999999999998887753 34599999999999999998765432211 123333221 22 2345799
Q ss_pred EEEEccchhhhcc---------CHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 369 LVSCQFCIHYSFE---------SVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 369 vVi~~~vLh~lFe---------s~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+|++.+++|+++. +..+...+|++++++|||||.|++..
T Consensus 490 vVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 490 TIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9999999998642 23578899999999999999999974
No 70
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.21 E-value=1.7e-10 Score=120.13 Aligned_cols=106 Identities=20% Similarity=0.236 Sum_probs=79.6
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||+|||+|.++..+++.|..+|+|+|+++.+++.|+++....+..... ..+..+.. . ...++||+|+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~-----~~~~~~~~-~--~~~~~fDlVv 230 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRL-----QVKLIYLE-Q--PIEGKADVIV 230 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcce-----EEEecccc-c--ccCCCceEEE
Confidence 46899999999999998888888779999999999999999987765443221 01222111 1 1235799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ 412 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~ 412 (597)
++... .....++.++.++|||||+|+++......
T Consensus 231 an~~~-------~~l~~ll~~~~~~LkpgG~li~sgi~~~~ 264 (288)
T TIGR00406 231 ANILA-------EVIKELYPQFSRLVKPGGWLILSGILETQ 264 (288)
T ss_pred EecCH-------HHHHHHHHHHHHHcCCCcEEEEEeCcHhH
Confidence 98654 34467899999999999999998765543
No 71
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.20 E-value=9.1e-11 Score=104.38 Aligned_cols=112 Identities=23% Similarity=0.230 Sum_probs=80.6
Q ss_pred CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC-CCCCCceeEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY-EDKALELDLVS 371 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l-~~~~~sFDvVi 371 (597)
+.+|||+|||+|.++..+++.+..+++|+|+++..++.|+.++.......+.. ++..|..... ....++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~-----~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVE-----VIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEE-----EEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEE-----EEECchhhchhhccCceeEEEE
Confidence 36899999999999999888775699999999999999999988765533321 4555532221 12236799999
Q ss_pred EccchhhhccC----HHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 372 CQFCIHYSFES----VQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 372 ~~~vLh~lFes----~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
++-.++..... ......+++.+.++|||||.+++.+++
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 98665432111 124578999999999999999998764
No 72
>PRK14968 putative methyltransferase; Provisional
Probab=99.19 E-value=4.6e-10 Score=107.75 Aligned_cols=109 Identities=20% Similarity=0.238 Sum_probs=79.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcc-ccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEE-ARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~-~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+|||+|||+|.++..++..+ .+++|+|+|+.+++.++++........+ . .++..++...+.. .+||+|
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~-----~~~~~d~~~~~~~--~~~d~v 94 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGV-----EVIRSDLFEPFRG--DKFDVI 94 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcce-----EEEeccccccccc--cCceEE
Confidence 56789999999999999988876 6999999999999999988766544321 1 1344444444433 369999
Q ss_pred EEccchhh-----------------hccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 371 SCQFCIHY-----------------SFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 371 i~~~vLh~-----------------lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
+++..+.. ...+......+++++.++|||||.+++.++
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 98754321 001123467789999999999999988654
No 73
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.18 E-value=4.6e-10 Score=109.10 Aligned_cols=103 Identities=14% Similarity=0.073 Sum_probs=75.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+|||||||+|..+..+++.+ ..+|+|+|+++.+++.|+++....+... .. +...+....+ .++||+|
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~-----~~~~d~~~~~---~~~~D~v 101 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN-ID-----IIPGEAPIEL---PGKADAI 101 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-eE-----EEecCchhhc---CcCCCEE
Confidence 56799999999999999887654 3589999999999999998876654321 10 2222222222 2469999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
++....++ +..+++.+.++|+|||+|++.....
T Consensus 102 ~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~~~~ 134 (187)
T PRK08287 102 FIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTFILL 134 (187)
T ss_pred EECCCccC-------HHHHHHHHHHhcCCCeEEEEEEecH
Confidence 99766543 3468899999999999999876443
No 74
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.18 E-value=4e-10 Score=117.94 Aligned_cols=105 Identities=16% Similarity=0.129 Sum_probs=79.2
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
+..+|||||||+|.++..+++.. ..+++++|+ +.+++.++++....+...+.. +...|... .+.+ .+|+|
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~-----~~~~d~~~-~~~~--~~D~v 219 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMR-----GIAVDIYK-ESYP--EADAV 219 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEE-----EEecCccC-CCCC--CCCEE
Confidence 56799999999999999988764 358999998 789999999887766544332 23333221 1122 37999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
++..++|+. +.+....+|+++++.|+|||+|++.-
T Consensus 220 ~~~~~lh~~--~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 220 LFCRILYSA--NEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred EeEhhhhcC--ChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999899875 34566789999999999999998874
No 75
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.18 E-value=1.4e-10 Score=119.56 Aligned_cols=101 Identities=21% Similarity=0.348 Sum_probs=74.4
Q ss_pred CCCEEEEECCCCChhHHHHHhcC----CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG----VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g----~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF 367 (597)
...+|||+|||+|.++..++... ...++|+|+|+.|++.|+++.... .+...+. ..++...++|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~-----------~~~~~d~-~~lp~~~~sf 152 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQV-----------TFCVASS-HRLPFADQSL 152 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCC-----------eEEEeec-ccCCCcCCce
Confidence 35789999999999998876542 237999999999999998764321 0333332 2345555689
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA 415 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~ 415 (597)
|+|++.++- ..++++.++|||||+|++.+++...+..
T Consensus 153 D~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l~e 189 (272)
T PRK11088 153 DAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHLFE 189 (272)
T ss_pred eEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcchHH
Confidence 999987542 2357899999999999999998876543
No 76
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.18 E-value=1.2e-10 Score=128.91 Aligned_cols=104 Identities=17% Similarity=0.252 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh-ccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR-SQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~-e~l~~~~~sFDvV 370 (597)
++.+|||||||+|.++..++..+ .+|+|+|+|+.|++.+++..... . .. .++..++. ..++.+.++||+|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~--~-~i-----~~~~~d~~~~~~~~~~~~fD~I 107 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHY--K-NV-----KFMCADVTSPDLNISDGSVDLI 107 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccC--C-ce-----EEEEecccccccCCCCCCEEEE
Confidence 45789999999999999998775 59999999999999876542211 1 11 13333332 1233444679999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
+|.+++||+ +.++...+++++.++|||||+|++.
T Consensus 108 ~~~~~l~~l--~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 108 FSNWLLMYL--SDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred ehhhhHHhC--CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 999999997 3455789999999999999999885
No 77
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.16 E-value=7.7e-10 Score=108.77 Aligned_cols=113 Identities=15% Similarity=0.084 Sum_probs=81.0
Q ss_pred CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.|+++....+...... +...+..+.++...++||+
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~-----~~~~d~~~~l~~~~~~~D~ 114 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIV-----LIKGEAPEILFTINEKFDR 114 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeE-----EEEechhhhHhhcCCCCCE
Confidence 6789999999999999887653 2 3589999999999999999887665322111 2333322222222246999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHH
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMAR 416 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~ 416 (597)
|++.... ..+..+++.+.++|||||+|++.....+.+...
T Consensus 115 V~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~ 154 (198)
T PRK00377 115 IFIGGGS-------EKLKEIISASWEIIKKGGRIVIDAILLETVNNA 154 (198)
T ss_pred EEECCCc-------ccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHH
Confidence 9986432 456789999999999999999987777554433
No 78
>KOG1271|consensus
Probab=99.14 E-value=2.5e-10 Score=110.08 Aligned_cols=121 Identities=21% Similarity=0.268 Sum_probs=87.0
Q ss_pred CCEEEEECCCCChhHHHHHhcCCCE-EEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGGVKH-VVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g~~~-V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
..+|||||||+|.++..+++.++.. ++|+|.|+.+++.|+..+...+..+... +-+.|+..+ ....++||+|+
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~-----f~q~DI~~~-~~~~~qfdlvl 141 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIR-----FQQLDITDP-DFLSGQFDLVL 141 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCccee-----EEEeeccCC-cccccceeEEe
Confidence 3499999999999999999988644 9999999999999998877766654331 223333332 23346788888
Q ss_pred EccchhhhccC----HHHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHhh
Q psy17742 372 CQFCIHYSFES----VQQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYRR 419 (597)
Q Consensus 372 ~~~vLh~lFes----~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~~ 419 (597)
--..+..+-.+ ...+...+..+.++|+|||+|+|+..|. +.+.+.+..
T Consensus 142 DKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~ 195 (227)
T KOG1271|consen 142 DKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFEN 195 (227)
T ss_pred ecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhc
Confidence 76554433111 2234567889999999999999998877 666665543
No 79
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.14 E-value=1.2e-10 Score=115.78 Aligned_cols=140 Identities=19% Similarity=0.200 Sum_probs=100.2
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFDvV 370 (597)
+-.++||||||||.....+...- .+++|+|||.+|++.|.++-.-.. .+.+++...++ ....+||+|
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a-~~ltGvDiS~nMl~kA~eKg~YD~-----------L~~Aea~~Fl~~~~~er~DLi 192 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMA-DRLTGVDISENMLAKAHEKGLYDT-----------LYVAEAVLFLEDLTQERFDLI 192 (287)
T ss_pred ccceeeecccCcCcccHhHHHHH-hhccCCchhHHHHHHHHhccchHH-----------HHHHHHHHHhhhccCCcccch
Confidence 35789999999999888776554 589999999999999987622110 22333222222 123579999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCccccee
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYD 450 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~ 450 (597)
++..+|.|+ ..+..++--+..+|+|||.|.|++-... .+|. |.+.
T Consensus 193 ~AaDVl~Yl----G~Le~~~~~aa~~L~~gGlfaFSvE~l~------------~~~~--f~l~----------------- 237 (287)
T COG4976 193 VAADVLPYL----GALEGLFAGAAGLLAPGGLFAFSVETLP------------DDGG--FVLG----------------- 237 (287)
T ss_pred hhhhHHHhh----cchhhHHHHHHHhcCCCceEEEEecccC------------CCCC--eecc-----------------
Confidence 999999999 8999999999999999999999864331 0111 1111
Q ss_pred eeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742 451 FNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN 485 (597)
Q Consensus 451 F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~ 485 (597)
..-.|-.....++.+++..||+++....
T Consensus 238 -------ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 238 -------PSQRYAHSESYVRALLAASGLEVIAIED 265 (287)
T ss_pred -------hhhhhccchHHHHHHHHhcCceEEEeec
Confidence 0112456667789999999999998764
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.14 E-value=2.8e-10 Score=111.74 Aligned_cols=117 Identities=17% Similarity=0.147 Sum_probs=82.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC--CCCCCcee
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY--EDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l--~~~~~sFD 368 (597)
...+|||||||+|.++..++... ...|+|+|+++.|++.|+++....+..+.. +...+....+ ....+.+|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~------~i~~d~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLH------VLCGDANELLDKFFPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEE------EEccCHHHHHHhhCCCCcee
Confidence 35689999999999999888753 358999999999999999887765443211 3333322111 01234799
Q ss_pred EEEEccchhhhccCHH-----HHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742 369 LVSCQFCIHYSFESVQ-----QARCMLKNAAECLKPGGFFVGTVPDSNQIMA 415 (597)
Q Consensus 369 vVi~~~vLh~lFes~~-----d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~ 415 (597)
.|++++..+|. .... ....+++.++++|||||.|++.+.+......
T Consensus 90 ~v~~~~pdpw~-k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~ 140 (194)
T TIGR00091 90 KVFLNFPDPWP-KKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFED 140 (194)
T ss_pred EEEEECCCcCC-CCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 99998765542 1100 0157999999999999999999988865544
No 81
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.13 E-value=5.1e-10 Score=93.72 Aligned_cols=103 Identities=26% Similarity=0.359 Sum_probs=75.6
Q ss_pred EEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEcc
Q psy17742 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQF 374 (597)
Q Consensus 295 rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~ 374 (597)
+|||+|||.|..+..++.....+++++|+++.+++.+++......... . .++..+.........++||+|++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADN-V-----EVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccc-e-----EEEEcChhhhccccCCceEEEEEcc
Confidence 489999999999998887555699999999999999885322221111 1 1333333322211235799999999
Q ss_pred chhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 375 CIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 375 vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
++++. ......+++.+.+.|+|||.++++
T Consensus 75 ~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL---VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 98872 278889999999999999999986
No 82
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.13 E-value=4.2e-10 Score=120.08 Aligned_cols=107 Identities=18% Similarity=0.264 Sum_probs=82.4
Q ss_pred CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
..+|||||||+|.++..+++.+ ..+|+++|+|+.|++.|+++....+... .++..+....+ .++||+|+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~-------~~~~~D~~~~~---~~~fDlIv 266 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEG-------EVFASNVFSDI---KGRFDMII 266 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-------EEEEccccccc---CCCccEEE
Confidence 4589999999999999888764 3589999999999999999887655431 13333332222 35799999
Q ss_pred EccchhhhccC-HHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 372 CQFCIHYSFES-VQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 372 ~~~vLh~lFes-~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
|+..+|+.... ......+++++.++|||||.|++....
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 99999874332 356789999999999999999887654
No 83
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.12 E-value=2.6e-10 Score=119.23 Aligned_cols=100 Identities=25% Similarity=0.299 Sum_probs=77.2
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||+|||+|.+++..++.|..+|+|+|+++.+++.|+++...++...+. .+. ...... .++||+|+
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~------~v~--~~~~~~--~~~~dlvv 230 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRI------EVS--LSEDLV--EGKFDLVV 230 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCE------EES--CTSCTC--CS-EEEEE
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeE------EEE--Eecccc--cccCCEEE
Confidence 57899999999999999999999889999999999999999998887765432 111 112222 26799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
++-.. +-+..++..+.++|+|||+|+++-.
T Consensus 231 ANI~~-------~vL~~l~~~~~~~l~~~G~lIlSGI 260 (295)
T PF06325_consen 231 ANILA-------DVLLELAPDIASLLKPGGYLILSGI 260 (295)
T ss_dssp EES-H-------HHHHHHHHHCHHHEEEEEEEEEEEE
T ss_pred ECCCH-------HHHHHHHHHHHHhhCCCCEEEEccc
Confidence 98544 4456788999999999999999754
No 84
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=3.3e-10 Score=117.98 Aligned_cols=103 Identities=19% Similarity=0.180 Sum_probs=79.3
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||+|||+|.+++..++.|...++|+|+++.+++.|+++...++..... ....|.. ...+. .++||+|+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~---~~~~~~~---~~~~~-~~~~DvIV 234 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLV---QAKGFLL---LEVPE-NGPFDVIV 234 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhh---hcccccc---hhhcc-cCcccEEE
Confidence 57899999999999999999999989999999999999999998877665211 0001211 11111 25799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
++-.- +-+..+...++++|||||+++++-.
T Consensus 235 ANILA-------~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 235 ANILA-------EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred ehhhH-------HHHHHHHHHHHHHcCCCceEEEEee
Confidence 98522 4456899999999999999999863
No 85
>PLN03075 nicotianamine synthase; Provisional
Probab=99.12 E-value=6.2e-10 Score=116.09 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=78.8
Q ss_pred CCCEEEEECCCCChhHHHHHh--c-CCCEEEEEeCChHHHHHHHHHHHh-hhhhccccccccceeehhhhccCCCCCCce
Q psy17742 292 SPIKVLDMGSGKGGDMLKWIN--G-GVKHVVFADIASVSIEDCKTRYEE-LKRKEEARPYRRNVFSAELRSQYEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~--~-g~~~V~GIDiS~~mIe~A~er~~~-~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF 367 (597)
++.+|||||||.|.++.-++. . ...+++|+|+++.+++.|++.+.. .+...+.. +...++.+..+. .+.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~-----F~~~Da~~~~~~-l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMF-----FHTADVMDVTES-LKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcE-----EEECchhhcccc-cCCc
Confidence 568999999998866554332 2 235899999999999999998854 44433331 333444333222 3569
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+|+|. ++||+ +.++...+|+++.+.|+|||+|++-.
T Consensus 197 DlVF~~-ALi~~--dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 197 DVVFLA-ALVGM--DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CEEEEe-ccccc--ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 999999 99886 44678899999999999999999976
No 86
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.12 E-value=6e-10 Score=110.35 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||||||+|..+..+++.. ..+|+|+|+++.+++.|++++...+..... .+...+..+.++. .++||+
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v-----~~~~~d~~~~~~~-~~~fD~ 145 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVV-----EVYHGDGKRGLEK-HAPFDA 145 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcE-----EEEECCcccCCcc-CCCccE
Confidence 56899999999999998776542 258999999999999999988765543221 1344444333433 357999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
|++..+++++ . .++.+.|+|||+|++.+.
T Consensus 146 Ii~~~~~~~~----~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 146 IIVTAAASTI----P------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EEEccCcchh----h------HHHHHhcCcCcEEEEEEc
Confidence 9999887665 2 367899999999998653
No 87
>PRK14967 putative methyltransferase; Provisional
Probab=99.11 E-value=7.3e-10 Score=110.91 Aligned_cols=109 Identities=17% Similarity=0.134 Sum_probs=77.9
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||+|||+|.++..++..+..+++|+|+++.+++.|+++....+... .+...++...++ .++||+|+
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~-------~~~~~d~~~~~~--~~~fD~Vi 106 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDV-------DVRRGDWARAVE--FRPFDVVV 106 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCee-------EEEECchhhhcc--CCCeeEEE
Confidence 568999999999999998887765699999999999999998876554321 133344333333 25799999
Q ss_pred Eccchhhhcc-----------------CHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 372 CQFCIHYSFE-----------------SVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 372 ~~~vLh~lFe-----------------s~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
++-..+.... .......+++.+.++|||||.|++....
T Consensus 107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 9743222100 1123567899999999999999986543
No 88
>PRK04266 fibrillarin; Provisional
Probab=99.10 E-value=1.3e-09 Score=109.97 Aligned_cols=103 Identities=20% Similarity=0.186 Sum_probs=71.4
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc---CCCCCCce
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ---YEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~---l~~~~~sF 367 (597)
++.+|||+|||+|.++..++... ...|+|+|+++.|++.+.++..... + . ..+..+...+ ... ..+|
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~--n-v-----~~i~~D~~~~~~~~~l-~~~~ 142 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERK--N-I-----IPILADARKPERYAHV-VEKV 142 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcC--C-c-----EEEECCCCCcchhhhc-cccC
Confidence 67899999999999999887652 2489999999999998877655431 1 1 1233332211 111 1359
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
|+|++... .......+|+++.++|||||+|+++++.
T Consensus 143 D~i~~d~~------~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 143 DVIYQDVA------QPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred CEEEECCC------ChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 99986422 1223456799999999999999998653
No 89
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.08 E-value=2.1e-10 Score=113.29 Aligned_cols=102 Identities=20% Similarity=0.299 Sum_probs=83.8
Q ss_pred CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
+..+|.|||||+|..+..+++. ..+.++|+|-|+.||+.|+.+..+.. +..+|+..--+. ..+|++
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~-----------f~~aDl~~w~p~--~~~dll 96 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDAT-----------FEEADLRTWKPE--QPTDLL 96 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCc-----------eecccHhhcCCC--Cccchh
Confidence 5678999999999999888765 45799999999999999988865431 444554443333 359999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+++.+||++ ++-..+|..+...|.|||+|-+.+|+-
T Consensus 97 faNAvlqWl----pdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 97 FANAVLQWL----PDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhhc----cccHHHHHHHHHhhCCCceEEEECCCc
Confidence 999999999 677789999999999999999999876
No 90
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.08 E-value=1.3e-09 Score=117.69 Aligned_cols=109 Identities=20% Similarity=0.265 Sum_probs=80.2
Q ss_pred CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhc--cccccccceeehhhhccCCCCCCceeE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKE--EARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~--~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
+.+|||||||+|.++..++..+ ..+|+++|+|+.+++.|++++....... .. .++..+....++. .+||+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v-----~~~~~D~l~~~~~--~~fDl 301 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRC-----EFMINNALSGVEP--FRFNA 301 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceE-----EEEEccccccCCC--CCEEE
Confidence 4689999999999999888764 4599999999999999999886554221 11 1333333333322 46999
Q ss_pred EEEccchhhhc-cCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 370 VSCQFCIHYSF-ESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 370 Vi~~~vLh~lF-es~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
|+|+-.+|... .+.....++++.+.++|+|||.|++..-
T Consensus 302 IlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 302 VLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred EEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 99998877642 1234567899999999999999999863
No 91
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.05 E-value=5.5e-09 Score=105.12 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
.+.+|||+|||+|..+..++... ..+++|+|+++.+++.|+++....+.... .+...+....++ .++||+|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~------~~~~~d~~~~~~--~~~fD~V 158 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNV------TFLQSDWFEPLP--GGKFDLI 158 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeE------EEEECchhccCc--CCceeEE
Confidence 34689999999999999988752 35899999999999999998776544311 144444434343 3579999
Q ss_pred EEccchhh------hcc----------------CHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 371 SCQFCIHY------SFE----------------SVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 371 i~~~vLh~------lFe----------------s~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+++..++. +.. .......+++++.++|+|||++++.+
T Consensus 159 i~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 159 VSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred EECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 99643221 100 01224578999999999999999865
No 92
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.04 E-value=1.8e-09 Score=107.56 Aligned_cols=101 Identities=20% Similarity=0.163 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcCC--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGV--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||||||+|..+..+++... .+|+|+|+++.+++.|++++...+..+.. +...+....++. ..+||+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~------~~~~d~~~~~~~-~~~fD~ 149 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVI------VIVGDGTQGWEP-LAPYDR 149 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeE------EEECCcccCCcc-cCCCCE
Confidence 678999999999999988876532 36999999999999999998776543211 333443333322 247999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
|++..+..++ ...+.+.|+|||+|++.+..
T Consensus 150 Ii~~~~~~~~----------~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 150 IYVTAAGPKI----------PEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred EEEcCCcccc----------cHHHHHhcCcCcEEEEEEcC
Confidence 9988766443 34578899999999987543
No 93
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.04 E-value=1.7e-09 Score=108.51 Aligned_cols=148 Identities=20% Similarity=0.158 Sum_probs=95.5
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccc------cccceeehhhhccCCCCCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARP------YRRNVFSAELRSQYEDKAL 365 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~------~~~d~F~~dl~e~l~~~~~ 365 (597)
++.+||..|||.|.++..|+..|. +|+|+|+|+.+|+.+.+............. ....+++.|+...-+...+
T Consensus 37 ~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g 115 (218)
T PF05724_consen 37 PGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG 115 (218)
T ss_dssp TSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred CCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence 567999999999999999999996 999999999999999654332111000000 0001334443221122225
Q ss_pred ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCc
Q psy17742 366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLF 445 (597)
Q Consensus 366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~f 445 (597)
+||+|+-..+|+.+ +.+...+..+.+.++|+|||.+++.+.. ++..... .|
T Consensus 116 ~fD~iyDr~~l~Al--pp~~R~~Ya~~l~~ll~p~g~~lLi~l~------------------------~~~~~~~-GP-- 166 (218)
T PF05724_consen 116 KFDLIYDRTFLCAL--PPEMRERYAQQLASLLKPGGRGLLITLE------------------------YPQGEME-GP-- 166 (218)
T ss_dssp SEEEEEECSSTTTS---GGGHHHHHHHHHHCEEEEEEEEEEEEE------------------------S-CSCSS-SS--
T ss_pred CceEEEEecccccC--CHHHHHHHHHHHHHHhCCCCcEEEEEEE------------------------cCCcCCC-Cc--
Confidence 79999999999887 5678889999999999999995443321 1110001 12
Q ss_pred ccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742 446 GAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN 485 (597)
Q Consensus 446 G~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~ 485 (597)
=|-++.+++++++. .+|++.....
T Consensus 167 ---------------Pf~v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 167 ---------------PFSVTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp ---------------S----HHHHHHHHT-TTEEEEEEEE
T ss_pred ---------------CCCCCHHHHHHHhc-CCcEEEEEec
Confidence 23478899999999 8999887765
No 94
>KOG3010|consensus
Probab=99.04 E-value=4.9e-10 Score=112.33 Aligned_cols=104 Identities=15% Similarity=0.181 Sum_probs=75.2
Q ss_pred CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEc
Q psy17742 294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQ 373 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~ 373 (597)
..++|+|||+|..++-++.. +.+|+|+|+|+.||+.|++..+..-..... .+..+-...|....++.|+|+|.
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~------~ms~~~~v~L~g~e~SVDlI~~A 107 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPS------TMSSDEMVDLLGGEESVDLITAA 107 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCc------cccccccccccCCCcceeeehhh
Confidence 37999999999777766665 579999999999999998864433211111 22222222343335689999999
Q ss_pred cchhhhccCHHHHHHHHHHHHHhccCCc-EEEEEeCC
Q psy17742 374 FCIHYSFESVQQARCMLKNAAECLKPGG-FFVGTVPD 409 (597)
Q Consensus 374 ~vLh~lFes~~d~~~~L~~i~rlLKPGG-~fIit~pn 409 (597)
.++||. +...++++++|+||+.| .+.+-..+
T Consensus 108 qa~HWF-----dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 108 QAVHWF-----DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hhHHhh-----chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 999997 78899999999998755 66665444
No 95
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.02 E-value=5.4e-09 Score=102.47 Aligned_cols=109 Identities=17% Similarity=0.148 Sum_probs=76.2
Q ss_pred CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+|||+|||+|.++..++.. ...+|+|+|+++.+++.|+++....+..... ++..+....+......+|.|
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~------~~~~d~~~~~~~~~~~~d~v 113 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVE------VIEGSAPECLAQLAPAPDRV 113 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeE------EEECchHHHHhhCCCCCCEE
Confidence 5689999999999999887754 2358999999999999999988765442211 33333222121111235666
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHH
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM 414 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~ 414 (597)
+... . .....+++++.++|+|||+|++..++.+.+.
T Consensus 114 ~~~~----~----~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~ 149 (196)
T PRK07402 114 CIEG----G----RPIKEILQAVWQYLKPGGRLVATASSLEGLY 149 (196)
T ss_pred EEEC----C----cCHHHHHHHHHHhcCCCeEEEEEeecHHHHH
Confidence 4421 1 3457899999999999999999998876544
No 96
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.01 E-value=5.3e-09 Score=106.47 Aligned_cols=136 Identities=20% Similarity=0.254 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccc
Q psy17742 272 TKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRN 350 (597)
Q Consensus 272 vKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d 350 (597)
+.++|+..|.... ...+|||||||+|.....++.. ...+++|||+.+.+.+.|++.........+..
T Consensus 31 ~DaiLL~~~~~~~-------~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~----- 98 (248)
T COG4123 31 TDAILLAAFAPVP-------KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQ----- 98 (248)
T ss_pred cHHHHHHhhcccc-------cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhcee-----
Confidence 6677888887731 3689999999999999998877 44799999999999999999988876665542
Q ss_pred eeehhhhccCCCC-CCceeEEEEccchhhh--------------ccCHHHHHHHHHHHHHhccCCcEEEEEeCCh--hHH
Q psy17742 351 VFSAELRSQYEDK-ALELDLVSCQFCIHYS--------------FESVQQARCMLKNAAECLKPGGFFVGTVPDS--NQI 413 (597)
Q Consensus 351 ~F~~dl~e~l~~~-~~sFDvVi~~~vLh~l--------------Fes~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i 413 (597)
+++.|+.+..... ..+||+|+|+--+.-. ++..-+.+.+++.+.++|||||.|.+..+-. ..+
T Consensus 99 v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei 178 (248)
T COG4123 99 VIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEI 178 (248)
T ss_pred EehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHH
Confidence 5666643332221 2359999997433111 0112246889999999999999999987644 233
Q ss_pred HHHHhh
Q psy17742 414 MARYRR 419 (597)
Q Consensus 414 ~~~l~~ 419 (597)
...++.
T Consensus 179 ~~~l~~ 184 (248)
T COG4123 179 IELLKS 184 (248)
T ss_pred HHHHHh
Confidence 444443
No 97
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.00 E-value=3.5e-09 Score=105.52 Aligned_cols=100 Identities=23% Similarity=0.177 Sum_probs=72.9
Q ss_pred CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||||||+|..+..++... ..+|+|+|+++.+++.|++++...+..+.. +...+....++ ..++||+
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~------~~~gd~~~~~~-~~~~fD~ 148 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVE------VIVGDGTLGYE-ENAPYDR 148 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeE------EEECCcccCCC-cCCCcCE
Confidence 67899999999999998777642 258999999999999999998766543211 33444333332 2357999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
|++..+++.+ ...+.+.|||||+|++...
T Consensus 149 I~~~~~~~~~----------~~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 149 IYVTAAGPDI----------PKPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred EEECCCcccc----------hHHHHHhhCCCcEEEEEEc
Confidence 9998776443 2356778999999998653
No 98
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.98 E-value=3.1e-09 Score=112.66 Aligned_cols=120 Identities=18% Similarity=0.117 Sum_probs=86.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||+|||+|.++..++..+ ..++|+|+++.|+..|+.++...+... . .++..|.. .++...++||+|+
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~-~~v~g~Di~~~~~~~a~~nl~~~g~~~-i-----~~~~~D~~-~l~~~~~~~D~Iv 253 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMG-AKVIGCDIDWKMVAGARINLEHYGIED-F-----FVKRGDAT-KLPLSSESVDAIA 253 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhC-CeEEEEcCCHHHHHHHHHHHHHhCCCC-C-----eEEecchh-cCCcccCCCCEEE
Confidence 57899999999999998877766 489999999999999999887655443 1 13444432 2343346799999
Q ss_pred Eccchhhh--c-c--CHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742 372 CQFCIHYS--F-E--SVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR 419 (597)
Q Consensus 372 ~~~vLh~l--F-e--s~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~ 419 (597)
+...+.-. . . ...-...+|+++.++|||||++++.+++...+...+..
T Consensus 254 ~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~~~ 306 (329)
T TIGR01177 254 TDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLAED 306 (329)
T ss_pred ECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHHhh
Confidence 96332110 0 0 11335789999999999999999999887655554443
No 99
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.97 E-value=6.5e-09 Score=108.28 Aligned_cols=113 Identities=19% Similarity=0.208 Sum_probs=80.3
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++....+...+.. +...++.+.++. ++||+|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~-----~~~~D~~~~~~~--~~fD~I 193 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVT-----LIQSDLFAALPG--RKYDLI 193 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEECchhhccCC--CCccEE
Confidence 35789999999999999988753 3589999999999999999987765432221 444444444432 469999
Q ss_pred EEccc------hhhh-----cc----------CHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742 371 SCQFC------IHYS-----FE----------SVQQARCMLKNAAECLKPGGFFVGTVPDSN 411 (597)
Q Consensus 371 i~~~v------Lh~l-----Fe----------s~~d~~~~L~~i~rlLKPGG~fIit~pn~~ 411 (597)
+++-- +..+ ++ .......+++.+.++|+|||++++.+....
T Consensus 194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~ 255 (284)
T TIGR03533 194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM 255 (284)
T ss_pred EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence 99621 1100 00 012347889999999999999999987653
No 100
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.97 E-value=5.6e-09 Score=103.47 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=73.5
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||+|||+|..+..++... .+++++|+++.+++.|++++...+..... +...+....++. .++||+|+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~------~~~~d~~~~~~~-~~~fD~I~ 149 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVS------VRHGDGWKGWPA-YAPFDRIL 149 (212)
T ss_pred CCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceE------EEECCcccCCCc-CCCcCEEE
Confidence 57899999999999988777665 48999999999999999988765443211 333333333332 25799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
+..+++++ .+.+.+.|+|||.+++.+.
T Consensus 150 ~~~~~~~~----------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAAAPEI----------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EccCchhh----------hHHHHHhcCCCcEEEEEEc
Confidence 98776554 3456789999999999876
No 101
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.96 E-value=7e-09 Score=111.93 Aligned_cols=115 Identities=17% Similarity=0.210 Sum_probs=85.1
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhh---hccCCCCCCce
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAEL---RSQYEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl---~e~l~~~~~sF 367 (597)
.+..+||||||+|.++..++... ...++|+|+++.+++.|.++....+..+.. ++..+. ...++ ++++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~------~i~~DA~~ll~~~~--~~s~ 193 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLL------IINYDARLLLELLP--SNSV 193 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEE------EEECCHHHhhhhCC--CCce
Confidence 35689999999999999988764 358999999999999999988776554322 344442 22343 4679
Q ss_pred eEEEEccchhhhccCHH---HHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742 368 DLVSCQFCIHYSFESVQ---QARCMLKNAAECLKPGGFFVGTVPDSNQIMA 415 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~---d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~ 415 (597)
|.|++++...|. .... -...+|+.++++|+|||.|.+.+-+.+....
T Consensus 194 D~I~lnFPdPW~-KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~ 243 (390)
T PRK14121 194 EKIFVHFPVPWD-KKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEF 243 (390)
T ss_pred eEEEEeCCCCcc-ccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHH
Confidence 999998776552 1111 1157999999999999999999988865543
No 102
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.95 E-value=1.3e-09 Score=103.97 Aligned_cols=143 Identities=15% Similarity=0.091 Sum_probs=85.1
Q ss_pred EEEeCChHHHHHHHHHHHhhhh--hccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHh
Q psy17742 319 VFADIASVSIEDCKTRYEELKR--KEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAEC 396 (597)
Q Consensus 319 ~GIDiS~~mIe~A~er~~~~~~--~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rl 396 (597)
+|+|+|+.||+.|+++...... ..+. .+...+ ...++...++||+|++.+++|++ .+...+|++++++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i-----~~~~~d-~~~lp~~~~~fD~v~~~~~l~~~----~d~~~~l~ei~rv 70 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCI-----EWIEGD-AIDLPFDDCEFDAVTMGYGLRNV----VDRLRAMKEMYRV 70 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCce-----EEEEec-hhhCCCCCCCeeEEEecchhhcC----CCHHHHHHHHHHH
Confidence 5899999999999887543221 1111 133333 33456666789999999999998 6888999999999
Q ss_pred ccCCcEEEEEeCChh--HHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHH
Q psy17742 397 LKPGGFFVGTVPDSN--QIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAG 474 (597)
Q Consensus 397 LKPGG~fIit~pn~~--~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~ 474 (597)
|||||.|++...... .+...+... .+.. .... ..........|.+ +..++ +..++.+++.++++
T Consensus 71 LkpGG~l~i~d~~~~~~~~~~~~~~~---~~~~------~~~~-~~~~~~~~~~y~y-l~~si---~~f~~~~el~~ll~ 136 (160)
T PLN02232 71 LKPGSRVSILDFNKSNQSVTTFMQGW---MIDN------VVVP-VATVYDLAKEYEY-LKYSI---NGYLTGEELETLAL 136 (160)
T ss_pred cCcCeEEEEEECCCCChHHHHHHHHH---Hccc------hHhh-hhHHhCChHHHHh-HHHHH---HHCcCHHHHHHHHH
Confidence 999999987755431 111111110 0000 0000 0000000111211 11111 23578999999999
Q ss_pred HcCCeEEEEEe
Q psy17742 475 EFGLKRILKEN 485 (597)
Q Consensus 475 eaGfelV~~~~ 485 (597)
++||+.+....
T Consensus 137 ~aGF~~~~~~~ 147 (160)
T PLN02232 137 EAGFSSACHYE 147 (160)
T ss_pred HcCCCcceEEE
Confidence 99999886543
No 103
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.94 E-value=5e-09 Score=105.68 Aligned_cols=114 Identities=11% Similarity=-0.023 Sum_probs=80.8
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhh------hhccccccccceeehhhhccC--CCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK------RKEEARPYRRNVFSAELRSQY--EDK 363 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~------~~~~~~~~~~d~F~~dl~e~l--~~~ 363 (597)
++.+||+.|||.|.++..|+..|. +|+|+|+|+..|+.+.+...... ...........++.+|+.+.- ...
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 457999999999999999999997 79999999999999876321100 000000000113444432211 112
Q ss_pred CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 364 ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 364 ~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
.++||+|+-..+|+++ +.+...+..+.+.++|+|||.+++.+.
T Consensus 122 ~~~fD~VyDra~~~Al--pp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 122 LPVFDIWYDRGAYIAL--PNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred cCCcCeeeeehhHhcC--CHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 2579999999999998 567888999999999999999988653
No 104
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.93 E-value=3.2e-09 Score=105.80 Aligned_cols=106 Identities=18% Similarity=0.217 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc---------cC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS---------QY 360 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e---------~l 360 (597)
++.+|||||||+|.++..+++.. ...|+|||+++ |. .. .. .. ++..|+.. .+
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~~-----~~-v~-----~i~~D~~~~~~~~~i~~~~ 113 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----PI-----VG-VD-----FLQGDFRDELVLKALLERV 113 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----CC-----CC-cE-----EEecCCCChHHHHHHHHHh
Confidence 56899999999999999887653 24899999998 21 00 00 11 23333211 23
Q ss_pred CCCCCceeEEEEccchhhhccCH--H------HHHHHHHHHHHhccCCcEEEEEeCChhHHHHHH
Q psy17742 361 EDKALELDLVSCQFCIHYSFESV--Q------QARCMLKNAAECLKPGGFFVGTVPDSNQIMARY 417 (597)
Q Consensus 361 ~~~~~sFDvVi~~~vLh~lFes~--~------d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l 417 (597)
. .++||+|++..+.++. ... + ....+|+++.++|||||.|++.+...+.+.+.+
T Consensus 114 ~--~~~~D~V~S~~~~~~~-g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l 175 (209)
T PRK11188 114 G--DSKVQVVMSDMAPNMS-GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYL 175 (209)
T ss_pred C--CCCCCEEecCCCCccC-CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHH
Confidence 2 3579999998776653 211 1 125789999999999999999887765544433
No 105
>PRK00811 spermidine synthase; Provisional
Probab=98.92 E-value=6.6e-09 Score=108.15 Aligned_cols=113 Identities=17% Similarity=0.278 Sum_probs=78.3
Q ss_pred CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhh----ccccccccceeehhhhccCCCCCCc
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRK----EEARPYRRNVFSAELRSQYEDKALE 366 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~----~~~~~~~~d~F~~dl~e~l~~~~~s 366 (597)
.+.+||+||||.|..+..+++. +..+|+++|+++.+++.|++.+...... .+. .+...|....+....++
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv-----~v~~~Da~~~l~~~~~~ 150 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRV-----ELVIGDGIKFVAETENS 150 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCce-----EEEECchHHHHhhCCCc
Confidence 4578999999999999998876 5679999999999999999987653211 111 13334433333323467
Q ss_pred eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
||+|++-..-++.....---..+++.++++|+|||+|++...+
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 151 FDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred ccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 9999986543332000011367899999999999999986544
No 106
>PTZ00146 fibrillarin; Provisional
Probab=98.91 E-value=2e-08 Score=104.61 Aligned_cols=102 Identities=21% Similarity=0.159 Sum_probs=68.3
Q ss_pred CCCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc--CCCCCCc
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ--YEDKALE 366 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~--l~~~~~s 366 (597)
.++.+|||||||+|.++..+++.- ...|+++|+++.|++...+...... + .. .+..|...+ +.....+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~--N-I~-----~I~~Da~~p~~y~~~~~~ 202 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRP--N-IV-----PIIEDARYPQKYRMLVPM 202 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcC--C-CE-----EEECCccChhhhhcccCC
Confidence 467899999999999999988752 2489999999986654444332211 1 11 223332211 1111236
Q ss_pred eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
||+|++..+. ..+...++.++.++|||||+|++.
T Consensus 203 vDvV~~Dva~------pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 203 VDVIFADVAQ------PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCEEEEeCCC------cchHHHHHHHHHHhccCCCEEEEE
Confidence 9999887542 245667788999999999999995
No 107
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.91 E-value=1.4e-08 Score=105.54 Aligned_cols=110 Identities=18% Similarity=0.322 Sum_probs=79.5
Q ss_pred CEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742 294 IKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC 372 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~ 372 (597)
.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++....+...+.. +...++.+.++. .+||+|++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~-----~~~~d~~~~~~~--~~fDlIvs 188 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVE-----FIQSNLFEPLAG--QKIDIIVS 188 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEECchhccCcC--CCccEEEE
Confidence 689999999999999888754 3589999999999999999877665432221 344444444432 36999999
Q ss_pred cc-------------chhhh-----cc---CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 373 QF-------------CIHYS-----FE---SVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 373 ~~-------------vLh~l-----Fe---s~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+- +++|- +. .......++.++.++|+|||+|++.+.+.
T Consensus 189 NPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 189 NPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 62 12211 00 12357789999999999999999988765
No 108
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.88 E-value=1.3e-08 Score=103.81 Aligned_cols=98 Identities=17% Similarity=0.291 Sum_probs=76.3
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
...++||||+|.|..+..++.. +.+|+++++|+.|....+++ +.. .+..+ .+.....+||+|+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g~~---------vl~~~---~w~~~~~~fDvIs 156 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----GFT---------VLDID---DWQQTDFKFDVIS 156 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----CCe---------EEehh---hhhccCCceEEEe
Confidence 4578999999999999999764 46899999999996665543 211 22221 1333345799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
|.++|.-. .++..+|+.+++.|+|+|++|+.+.-+
T Consensus 157 cLNvLDRc----~~P~~LL~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 157 CLNVLDRC----DRPLTLLRDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred ehhhhhcc----CCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 99999877 788999999999999999999987554
No 109
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.87 E-value=1.9e-08 Score=105.99 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=79.3
Q ss_pred CEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742 294 IKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC 372 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~ 372 (597)
.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++....+...+.. +...++.+.++. ++||+|++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~-----~~~~D~~~~l~~--~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVT-----LIESDLFAALPG--RRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEE-----EEECchhhhCCC--CCccEEEE
Confidence 689999999999999887653 3589999999999999999987765432221 444454444432 46999999
Q ss_pred ccc------hhhh-----cc----------CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 373 QFC------IHYS-----FE----------SVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 373 ~~v------Lh~l-----Fe----------s~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+-. +..+ ++ .......+++++.++|+|||++++.+...
T Consensus 208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~ 266 (307)
T PRK11805 208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS 266 (307)
T ss_pred CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC
Confidence 621 1100 00 01335788999999999999999988655
No 110
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.87 E-value=2.8e-08 Score=101.69 Aligned_cols=108 Identities=20% Similarity=0.352 Sum_probs=75.3
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.|+++.. ....... .++..++...++ .++||+|
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i-----~~~~~d~~~~~~--~~~fD~I 179 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARV-----EFLQGDWFEPLP--GGRFDLI 179 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcE-----EEEEccccCcCC--CCceeEE
Confidence 46789999999999999887654 4689999999999999999876 1111111 133444333333 3579999
Q ss_pred EEccch------hhh-------------c---cCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 371 SCQFCI------HYS-------------F---ESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 371 i~~~vL------h~l-------------F---es~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+++... +.+ + ........+++++.++|+|||++++.+
T Consensus 180 v~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 180 VSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred EECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 995321 100 0 012345789999999999999999965
No 111
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.86 E-value=7.8e-08 Score=93.78 Aligned_cols=128 Identities=18% Similarity=0.202 Sum_probs=94.1
Q ss_pred CCCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
.++.+++|||||+|..+..|+..+ ..+|+++|-++++++..+++....+..+.. ....+..+.++... +||.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~------vv~g~Ap~~L~~~~-~~da 105 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLE------VVEGDAPEALPDLP-SPDA 105 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEE------EEeccchHhhcCCC-CCCE
Confidence 378899999999999999998544 469999999999999999998887754332 33333333344332 6999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQC 434 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F 434 (597)
|+....- ....+|+.+...|||||++|......+.+...+.......+. ++-.+..
T Consensus 106 iFIGGg~--------~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~i 161 (187)
T COG2242 106 IFIGGGG--------NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR-EIVQVQI 161 (187)
T ss_pred EEECCCC--------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEe
Confidence 9988762 446889999999999999999999887776665544322222 5554443
No 112
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.86 E-value=1.1e-08 Score=99.76 Aligned_cols=100 Identities=21% Similarity=0.224 Sum_probs=66.4
Q ss_pred CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh---------ccC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR---------SQY 360 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~---------e~l 360 (597)
++.+|||+|||+|.++..++... ..+|+|+|+|+.+ .. .+.. +...+.. ..+
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~--~~i~---------~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI--ENVD---------FIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC--CCce---------EEEeeCCChhHHHHHHHHh
Confidence 67899999999999988876543 3479999999864 11 0110 2222211 112
Q ss_pred CCCCCceeEEEEccchh--------hhccCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742 361 EDKALELDLVSCQFCIH--------YSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN 411 (597)
Q Consensus 361 ~~~~~sFDvVi~~~vLh--------~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~ 411 (597)
+ .++||+|++..+.| +. ........+|+++.++|+|||+|++.+...+
T Consensus 95 ~--~~~~D~V~~~~~~~~~g~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~ 150 (188)
T TIGR00438 95 G--DDKVDVVMSDAAPNISGYWDIDHL-RSIDLVELALDIAKEVLKPKGNFVVKVFQGE 150 (188)
T ss_pred C--CCCccEEEcCCCCCCCCCccccHH-HHHHHHHHHHHHHHHHccCCCEEEEEEccCc
Confidence 2 34699999865432 11 1123457899999999999999999766653
No 113
>PRK04457 spermidine synthase; Provisional
Probab=98.83 E-value=1.9e-08 Score=103.71 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=76.2
Q ss_pred CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+|||||||.|..+..++.. +..+++++|+++.+++.|++.+.......+.. +...|..+.+....++||+|
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~-----v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFE-----VIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceE-----EEECCHHHHHHhCCCCCCEE
Confidence 4578999999999999887654 34589999999999999999865432211111 33344332232223579999
Q ss_pred EEccchhhh-ccCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742 371 SCQFCIHYS-FESVQQARCMLKNAAECLKPGGFFVGTVPDSN 411 (597)
Q Consensus 371 i~~~vLh~l-Fes~~d~~~~L~~i~rlLKPGG~fIit~pn~~ 411 (597)
++.. ++.. ....-....+++.+.++|+|||+|++...+..
T Consensus 141 ~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 141 LVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred EEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 8752 2211 00001136899999999999999999765543
No 114
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.81 E-value=9e-08 Score=98.03 Aligned_cols=109 Identities=16% Similarity=0.217 Sum_probs=75.3
Q ss_pred CCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC-CCCceeEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED-KALELDLV 370 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~-~~~sFDvV 370 (597)
+.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++...+.. ++..++.+.++. ..++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~---------~~~~D~~~~l~~~~~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGT---------VHEGDLYDALPTALRGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCE---------EEEeechhhcchhcCCCEeEE
Confidence 458999999999999987754 2358999999999999999987654421 333333322221 12469999
Q ss_pred EEccch------hhh------cc----------CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 371 SCQFCI------HYS------FE----------SVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 371 i~~~vL------h~l------Fe----------s~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+++--. +.+ ++ ..+-.+.+++.+.++|+|||+|++.+...
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 997422 111 00 01224688899999999999999987644
No 115
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=3.6e-08 Score=102.56 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=87.0
Q ss_pred CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
+.+|||+|||.|.+...+++.. ..+++.+|++..+|+.|+++...+...... ++..++.+... ++||+|+
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~------v~~s~~~~~v~---~kfd~Ii 229 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTE------VWASNLYEPVE---GKFDLII 229 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccE------EEEeccccccc---ccccEEE
Confidence 4589999999999999988775 469999999999999999998877655321 45544444443 3799999
Q ss_pred EccchhhhccCH-HHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742 372 CQFCIHYSFESV-QQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR 418 (597)
Q Consensus 372 ~~~vLh~lFes~-~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~ 418 (597)
|+--||---... .-..++++...++|++||.|.+..-..-.....+.
T Consensus 230 sNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~ 277 (300)
T COG2813 230 SNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLK 277 (300)
T ss_pred eCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHH
Confidence 998887641111 12358999999999999999887764433333333
No 116
>PHA03411 putative methyltransferase; Provisional
Probab=98.80 E-value=4.8e-08 Score=100.98 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=68.9
Q ss_pred CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
..+|||+|||+|.++..++... ..+|+|+|+++.|++.|+++... . .+...++..... ..+||+|+
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~------v-----~~v~~D~~e~~~--~~kFDlII 131 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPE------A-----EWITSDVFEFES--NEKFDVVI 131 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcC------C-----EEEECchhhhcc--cCCCcEEE
Confidence 4689999999999988776642 35899999999999999886431 1 144444433222 24699999
Q ss_pred EccchhhhccC-HHH---------------HHHHHHHHHHhccCCcEEEEE
Q psy17742 372 CQFCIHYSFES-VQQ---------------ARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 372 ~~~vLh~lFes-~~d---------------~~~~L~~i~rlLKPGG~fIit 406 (597)
++-.+++.-.. ..+ ...+++.+..+|+|+|.+++.
T Consensus 132 sNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 132 SNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 98887764111 011 245667777788888866654
No 117
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.79 E-value=1.1e-07 Score=94.31 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=99.1
Q ss_pred EEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc-CCC------CCCc
Q psy17742 295 KVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ-YED------KALE 366 (597)
Q Consensus 295 rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~-l~~------~~~s 366 (597)
+|||||||+|..+..++..- .-...-.|+.+..+..........+..+... -+..|+... ++. ...+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~-----P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRP-----PLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCC-----CeEeecCCCCCccccccccCCCC
Confidence 69999999999999988753 2367788998888766666555544433221 122222221 222 2357
Q ss_pred eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEE----EEecCCCCCCC
Q psy17742 367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQ----VQCLFDTSRPP 442 (597)
Q Consensus 367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~----I~F~~~~~d~~ 442 (597)
||+|+|..++|-+ +......+++.+.++|++||.|++=-|-.. +..+. ..|+..+...-
T Consensus 103 ~D~i~~~N~lHI~--p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~---------------~G~~ts~SN~~FD~sLr~rd 165 (204)
T PF06080_consen 103 FDAIFCINMLHIS--PWSAVEGLFAGAARLLKPGGLLFLYGPFNR---------------DGKFTSESNAAFDASLRSRD 165 (204)
T ss_pred cceeeehhHHHhc--CHHHHHHHHHHHHHhCCCCCEEEEeCCccc---------------CCEeCCcHHHHHHHHHhcCC
Confidence 9999999999887 667889999999999999999987332110 00010 11222111222
Q ss_pred CCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742 443 PLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE 484 (597)
Q Consensus 443 p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~ 484 (597)
|.+| +-+.+.+.++++++||+++...
T Consensus 166 p~~G----------------iRD~e~v~~lA~~~GL~l~~~~ 191 (204)
T PF06080_consen 166 PEWG----------------IRDIEDVEALAAAHGLELEEDI 191 (204)
T ss_pred CCcC----------------ccCHHHHHHHHHHCCCccCccc
Confidence 3333 2478899999999999988654
No 118
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.79 E-value=2.2e-08 Score=116.35 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=82.4
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh-ccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK-EEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~-~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+|||||||+|.++..++..|..+|+++|+|+.+++.|++++..++.. .+.. ++..|..+.+....++||+|
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~-----~i~~D~~~~l~~~~~~fDlI 612 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHR-----LIQADCLAWLKEAREQFDLI 612 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceE-----EEEccHHHHHHHcCCCcCEE
Confidence 36799999999999999999888778999999999999999998876653 2221 44444332221113579999
Q ss_pred EEccch-------hhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 371 SCQFCI-------HYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 371 i~~~vL-------h~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
++.--. ...+....+...++..+.++|+|||.|++++...
T Consensus 613 ilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 613 FIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred EECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 995321 1122223567788999999999999998876443
No 119
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.77 E-value=7.5e-08 Score=104.81 Aligned_cols=119 Identities=14% Similarity=0.151 Sum_probs=80.3
Q ss_pred CCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc-CCCCCCceeEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ-YEDKALELDLV 370 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~-l~~~~~sFDvV 370 (597)
+.+|||+|||+|..+..++.. ...+|+|+|+|+.|++.|+++....+.. . .+...++.+. ++. .++||+|
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~r--V-----~fi~gDl~e~~l~~-~~~FDLI 323 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGAR--V-----EFAHGSWFDTDMPS-EGKWDII 323 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCc--E-----EEEEcchhcccccc-CCCccEE
Confidence 468999999999999887754 3468999999999999999998765432 1 1334443222 222 2469999
Q ss_pred EEccchhh------------------hc---cCHHHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHhh
Q psy17742 371 SCQFCIHY------------------SF---ESVQQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYRR 419 (597)
Q Consensus 371 i~~~vLh~------------------lF---es~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~~ 419 (597)
+|+-...- ++ ....-.+.+++.+.++|+|||++++.+... +.+...+..
T Consensus 324 VSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~ 395 (423)
T PRK14966 324 VSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAE 395 (423)
T ss_pred EECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHH
Confidence 99643100 00 011235678888899999999998876553 455555543
No 120
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.75 E-value=1.4e-07 Score=104.02 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=81.6
Q ss_pred HHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceee
Q psy17742 274 SMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFS 353 (597)
Q Consensus 274 s~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~ 353 (597)
..++...+..+.. .++.+|||+|||+|.++..++..+ .+|+|+|+|+.|++.|+++....+..+. .++.
T Consensus 283 e~l~~~vl~~l~~----~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v------~~~~ 351 (443)
T PRK13168 283 QKMVARALEWLDP----QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNV------TFYH 351 (443)
T ss_pred HHHHHHHHHHhcC----CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCce------EEEE
Confidence 3455554444322 256799999999999999988776 5999999999999999998876654321 1444
Q ss_pred hhhhccC---CCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742 354 AELRSQY---EDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR 418 (597)
Q Consensus 354 ~dl~e~l---~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~ 418 (597)
.+..+.+ +...++||+|++.-.-. ....+++.+.+ ++|++++++++ |+..+...+.
T Consensus 352 ~d~~~~l~~~~~~~~~fD~Vi~dPPr~-------g~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl~ 410 (443)
T PRK13168 352 ANLEEDFTDQPWALGGFDKVLLDPPRA-------GAAEVMQALAK-LGPKRIVYVSC-NPATLARDAG 410 (443)
T ss_pred eChHHhhhhhhhhcCCCCEEEECcCCc-------ChHHHHHHHHh-cCCCeEEEEEe-ChHHhhccHH
Confidence 4433222 12234699998863321 12345555555 68999888887 5555544443
No 121
>KOG2899|consensus
Probab=98.75 E-value=9.7e-08 Score=96.03 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=77.5
Q ss_pred CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccc------------------------
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARP------------------------ 346 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~------------------------ 346 (597)
.+..+|||||-.|..+..+++. +...++|+||++..|..|++..+..........
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 4678999999999999998764 567899999999999999997654321111000
Q ss_pred --cc--cceeehh-----hhccCCCCCCceeEEEEccchhhhc--cCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 347 --YR--RNVFSAE-----LRSQYEDKALELDLVSCQFCIHYSF--ESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 347 --~~--~d~F~~d-----l~e~l~~~~~sFDvVi~~~vLh~lF--es~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
.+ ...|... ..+.+......||+|+|..+--|+. -+.+.+..+|+.++++|.|||+||+.--.
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQp 211 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQP 211 (288)
T ss_pred cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCc
Confidence 00 0001000 0111112235699999976522221 23467899999999999999999986433
No 122
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.75 E-value=7.6e-08 Score=105.66 Aligned_cols=114 Identities=17% Similarity=0.112 Sum_probs=76.8
Q ss_pred CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc-CCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ-YEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~-l~~~~~sFDv 369 (597)
++.+|||+|||+|+.+..++.. +..+|+|+|+++.+++.+++++...+...... ....+.... .....++||.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~-----~~~~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAE-----TKDGDGRGPSQWAENEQFDR 312 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEE-----EeccccccccccccccccCE
Confidence 6789999999999999887764 23589999999999999999987765432110 122221111 1012357999
Q ss_pred EEEc------cchhhhcc-----CHH-------HHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 370 VSCQ------FCIHYSFE-----SVQ-------QARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 370 Vi~~------~vLh~lFe-----s~~-------d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
|++- ++++...+ +.. ....+|.++.++|||||+|+.++..-
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9862 23433210 111 14689999999999999999887544
No 123
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.74 E-value=3.7e-08 Score=107.24 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=78.2
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhc-cccccccceeehhhhcc---CCCCCCce
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE-EARPYRRNVFSAELRSQ---YEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~-~~~~~~~d~F~~dl~e~---l~~~~~sF 367 (597)
++.+|||+|||+|.++...+..+..+|+++|+|+.+++.|++++..++... ... ++..|..+. +....++|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~-----~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAE-----FVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEE-----EEEccHHHHHHHHHhcCCCC
Confidence 368899999999999887666676799999999999999999988766531 221 344443222 21223579
Q ss_pred eEEEEccch---h--hhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 368 DLVSCQFCI---H--YSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 368 DvVi~~~vL---h--~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
|+|++.--. . .++........+++.+.++|+|||+|+.++.+
T Consensus 295 DlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 295 DVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred CEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 999987331 0 01111134566777889999999999976643
No 124
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.73 E-value=3.9e-08 Score=97.26 Aligned_cols=112 Identities=21% Similarity=0.400 Sum_probs=65.4
Q ss_pred CCCEEEEECCCCChhH----HHHHh---cCC---CEEEEEeCChHHHHHHHHH-HHhhhhhccc----cccc--------
Q psy17742 292 SPIKVLDMGSGKGGDM----LKWIN---GGV---KHVVFADIASVSIEDCKTR-YEELKRKEEA----RPYR-------- 348 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l----~~la~---~g~---~~V~GIDiS~~mIe~A~er-~~~~~~~~~~----~~~~-------- 348 (597)
+..+|+-.||++|.-. ..+.. ... -+++|+|||+.+|+.|++- |......... ..++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5689999999999822 22333 111 3899999999999999872 1111111000 0000
Q ss_pred --------ccee-ehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 349 --------RNVF-SAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 349 --------~d~F-~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
...| ..++.+ .....+.||+|+|..+|-|+ +.+...++++.+++.|+|||+|++.
T Consensus 111 ~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF--~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYF--DPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS---HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEe--CHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 0011 122333 12234679999999999997 6677899999999999999999985
No 125
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.73 E-value=1e-07 Score=100.99 Aligned_cols=100 Identities=15% Similarity=0.094 Sum_probs=71.5
Q ss_pred CCCEEEEECCCCChhHHHHHhcCC--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGV--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||||||+|..+..+++... ..|+|+|+++.+++.|+++....+..... +...+....++. .++||+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~------~i~gD~~~~~~~-~~~fD~ 152 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVI------FVCGDGYYGVPE-FAPYDV 152 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEE------EEeCChhhcccc-cCCccE
Confidence 568999999999999988876432 36999999999999999988766543211 333333333322 246999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
|++..+++.+ ...+.+.|+|||.+++...
T Consensus 153 Ii~~~g~~~i----------p~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 153 IFVTVGVDEV----------PETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred EEECCchHHh----------HHHHHHhcCCCCEEEEEeC
Confidence 9998766443 2345678999999988653
No 126
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.72 E-value=9.1e-08 Score=105.56 Aligned_cols=112 Identities=20% Similarity=0.159 Sum_probs=75.7
Q ss_pred CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||+|||+|..+..++.. +..+|+|+|+++.+++.++++....+..... +...|.......-.++||+
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~------~~~~D~~~~~~~~~~~fD~ 323 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIE------TKALDARKVHEKFAEKFDK 323 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEE------EEeCCcccccchhcccCCE
Confidence 5689999999999999887764 2358999999999999999998776543211 3334322211111146999
Q ss_pred EEEccc------hhhh-----ccCHHH-------HHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 370 VSCQFC------IHYS-----FESVQQ-------ARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 370 Vi~~~v------Lh~l-----Fes~~d-------~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
|++... +.+. ..+..+ ...+|+++.++|||||.|+.++..
T Consensus 324 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 324 ILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred EEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 997421 1110 011122 256899999999999999976543
No 127
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.71 E-value=1.3e-07 Score=103.99 Aligned_cols=109 Identities=20% Similarity=0.225 Sum_probs=75.6
Q ss_pred CCCEEEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFDv 369 (597)
++.+|||+|||+|..+..++.... ..|+|+|+++.+++.+++++...+.... +...|...... ...++||.
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~-------~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKAT-------VIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeE-------EEEcCcccchhhcccCCCCE
Confidence 678999999999999988877542 5899999999999999999877654321 33333222111 12356999
Q ss_pred EEEccc------h------hhhccCHH-------HHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 370 VSCQFC------I------HYSFESVQ-------QARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 370 Vi~~~v------L------h~lFes~~-------d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
|++.-. + .|. .+.. ....+|..+.++|||||+++.++.
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~-~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWL-RRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred EEECCCCCcccccccCcccccc-CCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 995321 1 111 1122 235789999999999999998774
No 128
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.71 E-value=1.2e-07 Score=104.40 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=76.7
Q ss_pred CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-CCCCcee
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-DKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-~~~~sFD 368 (597)
++.+|||+|||+|+.+..++.. +..+|+++|+++.+++.+++++...+..... +...|.. .++ ...++||
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~------~~~~Da~-~l~~~~~~~fD 309 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIE------IKIADAE-RLTEYVQDTFD 309 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEE------EEECchh-hhhhhhhccCC
Confidence 6789999999999988877654 2358999999999999999998876553211 3333322 122 1235699
Q ss_pred EEEEcc---chhhhc--------cCH-------HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 369 LVSCQF---CIHYSF--------ESV-------QQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 369 vVi~~~---vLh~lF--------es~-------~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
.|++-- .+..+- .+. ....++|.++.++|||||+++.++...
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 998721 122210 011 123678999999999999999987654
No 129
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.70 E-value=2e-07 Score=92.44 Aligned_cols=108 Identities=11% Similarity=0.031 Sum_probs=75.4
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||+|||+|.++..++..+..+|+++|+++.+++.|++++...+... . .++..++...++...++||+|+
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~-v-----~~~~~D~~~~l~~~~~~fDlV~ 126 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGN-A-----RVVNTNALSFLAQPGTPHNVVF 126 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCc-E-----EEEEchHHHHHhhcCCCceEEE
Confidence 457999999999999987665666799999999999999999877765432 1 1444444333322224699999
Q ss_pred EccchhhhccCHHHHHHHHHHHHH--hccCCcEEEEEeCCh
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAE--CLKPGGFFVGTVPDS 410 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~r--lLKPGG~fIit~pn~ 410 (597)
+.--++. .-...++..+.. +|+|+|++++.....
T Consensus 127 ~DPPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 127 VDPPFRK-----GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred ECCCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 9865322 223345555544 489999999987654
No 130
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.70 E-value=1.1e-07 Score=104.93 Aligned_cols=110 Identities=18% Similarity=0.167 Sum_probs=75.3
Q ss_pred CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||+|||+|+.+..++.. +..+|+|+|+|+.+++.++++....+..... +...+.....+ .++||+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~------~~~~Da~~~~~--~~~fD~ 321 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIE------TIEGDARSFSP--EEQPDA 321 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEE------EEeCccccccc--CCCCCE
Confidence 5689999999999988776642 2348999999999999999998776553211 33333222222 246999
Q ss_pred EEEc----c--ch------hhhccCHH-------HHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 370 VSCQ----F--CI------HYSFESVQ-------QARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 370 Vi~~----~--vL------h~lFes~~-------d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
|++- . ++ .+. -+.. ....+|.++.++|||||+++..+...
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~-~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWK-LTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhc-CCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9962 1 11 011 1111 23468999999999999999988554
No 131
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.70 E-value=8.3e-08 Score=107.59 Aligned_cols=111 Identities=19% Similarity=0.279 Sum_probs=77.1
Q ss_pred CCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
+.+|||+|||+|..+..++.. ...+|+|+|+|+.+++.|+++....+...+.. +...++...++ .++||+|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~-----~~~~D~~~~~~--~~~fDlIv 211 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQ-----IIHSNWFENIE--KQKFDFIV 211 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCcccee-----eeecchhhhCc--CCCccEEE
Confidence 468999999999999887754 34589999999999999999877655432221 33444333343 24699999
Q ss_pred Eccch--------------hh-----hcc---CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 372 CQFCI--------------HY-----SFE---SVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 372 ~~~vL--------------h~-----lFe---s~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
|+-.. .| +|. .......+++++.++|+|||.|++.+-..
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~ 272 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK 272 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc
Confidence 95321 01 111 11345678899999999999999876433
No 132
>KOG2940|consensus
Probab=98.69 E-value=1.1e-08 Score=101.78 Aligned_cols=131 Identities=17% Similarity=0.318 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccccc
Q psy17742 270 NWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRR 349 (597)
Q Consensus 270 nwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~ 349 (597)
.++|..+-..+..++...+. ....++|||||.|.....+...++.+++.+|.|..|++.++..- +.....
T Consensus 52 dylkeeig~rlaDrvfD~kk--~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i~~------- 121 (325)
T KOG2940|consen 52 DYLKEEIGDRLADRVFDCKK--SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSIET------- 121 (325)
T ss_pred hHHHHHHHHHHHHHHHHHhh--hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCceEE-------
Confidence 44554444444444443322 34679999999999999999999999999999999999998642 221111
Q ss_pred ceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742 350 NVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMA 415 (597)
Q Consensus 350 d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~ 415 (597)
..|..| .+.+++...+||+|++..++||+ .++...+.+|+..|||+|.|+.++...+.+.+
T Consensus 122 ~~~v~D-EE~Ldf~ens~DLiisSlslHW~----NdLPg~m~~ck~~lKPDg~FiasmlggdTLyE 182 (325)
T KOG2940|consen 122 SYFVGD-EEFLDFKENSVDLIISSLSLHWT----NDLPGSMIQCKLALKPDGLFIASMLGGDTLYE 182 (325)
T ss_pred EEEecc-hhcccccccchhhhhhhhhhhhh----ccCchHHHHHHHhcCCCccchhHHhccccHHH
Confidence 134332 34556666789999999999999 88899999999999999999999988887765
No 133
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.69 E-value=9.3e-08 Score=98.76 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=75.7
Q ss_pred CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
+.+||+||||+|..+..+++.. ..+++++|+++.+++.|++.+.......... . ..+...|....+....++||+|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~-~-v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDP-R-VDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCC-c-eEEEECchHHHHHhCCCCccEEE
Confidence 4599999999999998887765 5789999999999999999775532110000 0 01222332222222235799999
Q ss_pred EccchhhhccCHHH--HHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 372 CQFCIHYSFESVQQ--ARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 372 ~~~vLh~lFes~~d--~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+....... .... ...+++.++++|+|||++++...++
T Consensus 151 ~D~~~~~~--~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 151 VDSTDPVG--PAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred EeCCCCCC--cccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 86542221 1112 3688999999999999999875544
No 134
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.67 E-value=1.7e-07 Score=96.56 Aligned_cols=112 Identities=19% Similarity=0.176 Sum_probs=75.3
Q ss_pred CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||+|||+|+.+..++... ...|+++|+++.+++.+++++...+..+.. +...|.. .++...+.||+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~------~~~~D~~-~~~~~~~~fD~ 143 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVA------VTNFDGR-VFGAAVPKFDA 143 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEE------EecCCHH-HhhhhccCCCE
Confidence 67899999999999998876531 248999999999999999998876543211 3333322 12222245999
Q ss_pred EEEcc------chhhhc-----cCH-------HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 370 VSCQF------CIHYSF-----ESV-------QQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 370 Vi~~~------vLh~lF-----es~-------~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
|++-- ++..-. -+. .....+|+++.++|||||+|+.++...
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 98631 111100 011 123569999999999999999886543
No 135
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.67 E-value=1.6e-07 Score=103.33 Aligned_cols=111 Identities=17% Similarity=0.167 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccC---CCCCCc
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQY---EDKALE 366 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l---~~~~~s 366 (597)
++.+|||+|||+|+.+..++.. +..+|+++|+++.+++.+++++...+..+.. +...|..... +...++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~------~~~~D~~~~~~~~~~~~~~ 325 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIK------ILAADSRNLLELKPQWRGY 325 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEE------EEeCChhhccccccccccc
Confidence 5789999999999999887764 2348999999999999999998877654321 3333322211 112357
Q ss_pred eeEEEEc------cchhhhcc-----CHHH-------HHHHHHHHHHhccCCcEEEEEeC
Q psy17742 367 LDLVSCQ------FCIHYSFE-----SVQQ-------ARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 367 FDvVi~~------~vLh~lFe-----s~~d-------~~~~L~~i~rlLKPGG~fIit~p 408 (597)
||.|++- .++++..+ +..+ ...+|.++.++|||||+|+.++.
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 9999963 23332200 1111 46889999999999999987763
No 136
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.67 E-value=1.6e-07 Score=93.87 Aligned_cols=100 Identities=20% Similarity=0.253 Sum_probs=72.9
Q ss_pred CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||||||+|..+.-++.. + ...|+++|+.+..++.|++++...+..+.. +...|....++.. ++||.
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~------~~~gdg~~g~~~~-apfD~ 144 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVE------VVVGDGSEGWPEE-APFDR 144 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEE------EEES-GGGTTGGG--SEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCcee------EEEcchhhccccC-CCcCE
Confidence 7899999999999998877654 2 347999999999999999999887765432 4444444455543 57999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
|++..+...+ + ..+.+.||+||++++-+.
T Consensus 145 I~v~~a~~~i----p------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 145 IIVTAAVPEI----P------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp EEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred EEEeeccchH----H------HHHHHhcCCCcEEEEEEc
Confidence 9999877443 2 336678999999999765
No 137
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2e-07 Score=92.65 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=79.5
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||||||+|..+.-+++... +|+.+|+.+...+.|++++...+..+.. ..+.|-...++.. .+||.|+
T Consensus 72 ~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~------v~~gDG~~G~~~~-aPyD~I~ 143 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVT------VRHGDGSKGWPEE-APYDRII 143 (209)
T ss_pred CCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceE------EEECCcccCCCCC-CCcCEEE
Confidence 789999999999999998888763 9999999999999999999988775532 5555556667653 5799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
+..+...+ + +.+.+.|||||++++-+-
T Consensus 144 Vtaaa~~v----P------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 144 VTAAAPEV----P------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EeeccCCC----C------HHHHHhcccCCEEEEEEc
Confidence 98777444 2 335678999999999765
No 138
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.8e-07 Score=97.37 Aligned_cols=115 Identities=21% Similarity=0.336 Sum_probs=80.9
Q ss_pred EEEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEc
Q psy17742 295 KVLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQ 373 (597)
Q Consensus 295 rVLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~ 373 (597)
+|||||||+|..+..++.... ..|+|+|+|+.+++.|++++...+..... .+..++...+. ++||+|+++
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~------~~~~dlf~~~~---~~fDlIVsN 183 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVL------VVQSDLFEPLR---GKFDLIVSN 183 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEE------EEeeecccccC---CceeEEEeC
Confidence 799999999999999887763 49999999999999999998887752111 22223333333 479999997
Q ss_pred cc-h-----hh------------hc---cCHHHHHHHHHHHHHhccCCcEEEEEeC-Ch-hHHHHHHh
Q psy17742 374 FC-I-----HY------------SF---ESVQQARCMLKNAAECLKPGGFFVGTVP-DS-NQIMARYR 418 (597)
Q Consensus 374 ~v-L-----h~------------lF---es~~d~~~~L~~i~rlLKPGG~fIit~p-n~-~~i~~~l~ 418 (597)
-- + +. ++ ...+-...++.++.+.|+|||++++.+- +. ..+.+.+.
T Consensus 184 PPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~ 251 (280)
T COG2890 184 PPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFE 251 (280)
T ss_pred CCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHH
Confidence 31 0 00 11 1123468899999999999999999876 22 44444443
No 139
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.64 E-value=2.6e-07 Score=94.84 Aligned_cols=155 Identities=20% Similarity=0.278 Sum_probs=96.5
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhc-----------------------cccccc
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE-----------------------EARPYR 348 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~-----------------------~~~~~~ 348 (597)
++.++||||||.-.+...-+...+.+++..|.++..++..++-.++.+... +....+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 467999999998665433333445789999999999988777554421100 000011
Q ss_pred cceeehhhhcc--CCC---CCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccC
Q psy17742 349 RNVFSAELRSQ--YED---KALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSA 423 (597)
Q Consensus 349 ~d~F~~dl~e~--l~~---~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~ 423 (597)
..++..|+.+. +.. ...+||+|++.+++..+..+.+....+++++.++|||||.|++...
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~--------------- 200 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGV--------------- 200 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEE---------------
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEE---------------
Confidence 22333332222 222 1235999999999999999999999999999999999999998653
Q ss_pred ccCCceEEEEecCCCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742 424 SFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE 484 (597)
Q Consensus 424 ~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~ 484 (597)
++...|.+ |.+ ..+-..++.+.+++.++++||.++...
T Consensus 201 -l~~t~Y~v-------------G~~---------~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 201 -LGSTYYMV-------------GGH---------KFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp -SS-SEEEE-------------TTE---------EEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred -cCceeEEE-------------CCE---------ecccccCCHHHHHHHHHHcCCEEEecc
Confidence 22223321 111 112234788999999999999999877
No 140
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.63 E-value=2.4e-07 Score=93.98 Aligned_cols=103 Identities=14% Similarity=0.087 Sum_probs=74.0
Q ss_pred CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-----CCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-----DKA 364 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-----~~~ 364 (597)
++.+|||||||+|.-+..++.. +..+|+++|+++.+++.|++++...+...+.. +...+..+.++ ...
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~-----~~~gda~~~L~~l~~~~~~ 142 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKIN-----FIQSDALSALDQLLNNDPK 142 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEEccHHHHHHHHHhCCCC
Confidence 4679999999999977766543 23599999999999999999998877653332 33333222111 113
Q ss_pred CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
++||+|++-.. .+....++..+.++|+|||.+++.
T Consensus 143 ~~fD~VfiDa~-------k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 143 PEFDFAFVDAD-------KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred CCCCEEEECCC-------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 57999987522 245667899999999999999875
No 141
>PLN02366 spermidine synthase
Probab=98.60 E-value=2.5e-07 Score=97.64 Aligned_cols=111 Identities=18% Similarity=0.260 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhh---hccccccccceeehhhhccCCC-CCCc
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKR---KEEARPYRRNVFSAELRSQYED-KALE 366 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~---~~~~~~~~~d~F~~dl~e~l~~-~~~s 366 (597)
.+.+||+||||.|..+..+++.. ..+|+.+|+++.+++.|++.+..... ..+. .+...|....+.. ..++
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv-----~vi~~Da~~~l~~~~~~~ 165 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRV-----NLHIGDGVEFLKNAPEGT 165 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCce-----EEEEChHHHHHhhccCCC
Confidence 46899999999999999988764 57899999999999999998765321 1111 1333332222221 1357
Q ss_pred eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
||+|++-..-+......---..+++.++++|+|||+|+...
T Consensus 166 yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 166 YDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred CCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 99999864432211000113578999999999999998743
No 142
>PRK01581 speE spermidine synthase; Validated
Probab=98.59 E-value=4.3e-07 Score=97.24 Aligned_cols=114 Identities=19% Similarity=0.225 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHH--HHhhh---h-hccccccccceeehhhhccCCCCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTR--YEELK---R-KEEARPYRRNVFSAELRSQYEDKA 364 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er--~~~~~---~-~~~~~~~~~d~F~~dl~e~l~~~~ 364 (597)
.+.+||+||||.|..+..+++.. ..+|++||+++.+++.|++. +.... . ..+. .+...|....+....
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV-----~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRV-----NVHVCDAKEFLSSPS 224 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCce-----EEEECcHHHHHHhcC
Confidence 45799999999999988887754 57999999999999999962 11111 0 1111 133333333333334
Q ss_pred CceeEEEEccchhhh-ccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 365 LELDLVSCQFCIHYS-FESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 365 ~sFDvVi~~~vLh~l-Fes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
++||+|++-..-... ....---..+++.+++.|+|||+|++...++
T Consensus 225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 579999987421100 0001122579999999999999998875544
No 143
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.55 E-value=2.8e-06 Score=87.99 Aligned_cols=112 Identities=20% Similarity=0.328 Sum_probs=88.2
Q ss_pred CCCEEEEECCCCChhHHHHHhcC---CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG---VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g---~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD 368 (597)
.+.+||||+||.|+++...+... ..++...|.|+..|+..++...+.+......+..++.|..+....+.+ ..+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p---~P~ 211 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDP---APT 211 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCC---CCC
Confidence 57899999999999988865432 368999999999999999999998887765555566666543333332 368
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+++.+..+.+ |.+..-....|+.+.++|.|||++|.|.
T Consensus 212 l~iVsGL~El-F~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 212 LAIVSGLYEL-FPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEEEecchhh-CCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 8888865554 6777778889999999999999999987
No 144
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.55 E-value=6.9e-07 Score=88.30 Aligned_cols=117 Identities=16% Similarity=0.182 Sum_probs=80.7
Q ss_pred CEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh----hhccCCCCCCcee
Q psy17742 294 IKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----LRSQYEDKALELD 368 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d----l~e~l~~~~~sFD 368 (597)
..+||||||.|.++..++... -..++|+|+....+..|.++....+..+.. ++..+ +...++ ++++|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~------~~~~da~~~l~~~~~--~~~v~ 90 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVR------FLRGDARELLRRLFP--PGSVD 90 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEE------EEES-CTTHHHHHST--TTSEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceE------EEEccHHHHHhhccc--CCchh
Confidence 489999999999999988653 468999999999999999988877665543 44443 222233 35799
Q ss_pred EEEEccchhhhccCHH-----HHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742 369 LVSCQFCIHYSFESVQ-----QARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR 419 (597)
Q Consensus 369 vVi~~~vLh~lFes~~-----d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~ 419 (597)
.|+.+|.=-|. .... --..+|..+.++|+|||.|.+.|-+.+.....+..
T Consensus 91 ~i~i~FPDPWp-K~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~ 145 (195)
T PF02390_consen 91 RIYINFPDPWP-KKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQ 145 (195)
T ss_dssp EEEEES------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHH
T ss_pred eEEEeCCCCCc-ccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHH
Confidence 99998753331 1000 12579999999999999999999888766555443
No 145
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.54 E-value=4.2e-07 Score=87.16 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=72.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||||||+|.++..+++.+ .+++|+|+++.+++.+++++.... +. .+...|..+ ++....+||+|+
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~---~v-----~ii~~D~~~-~~~~~~~~d~vi 82 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAAD---NL-----TVIHGDALK-FDLPKLQPYKVV 82 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCC---CE-----EEEECchhc-CCccccCCCEEE
Confidence 56799999999999999998875 699999999999999998875421 11 133443322 222233599999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHH
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM 414 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~ 414 (597)
++..+|.. .+.+..++++. .+.++|+|++..-..+.+.
T Consensus 83 ~n~Py~~~---~~~i~~~l~~~--~~~~~~~l~~q~e~a~rl~ 120 (169)
T smart00650 83 GNLPYNIS---TPILFKLLEEP--PAFRDAVLMVQKEVARRLA 120 (169)
T ss_pred ECCCcccH---HHHHHHHHhcC--CCcceEEEEEEHHHhHHhc
Confidence 98666432 23444444432 2458899988765444443
No 146
>KOG1499|consensus
Probab=98.52 E-value=4.1e-07 Score=96.05 Aligned_cols=105 Identities=15% Similarity=0.219 Sum_probs=76.6
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc-cCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS-QYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e-~l~~~~~sFDvV 370 (597)
.++.|||+|||+|.++...+++|..+|+|+|.|..+ +.|.+....++.....+ .....+.+ .+| .++.|+|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~-----vi~gkvEdi~LP--~eKVDiI 131 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVIT-----VIKGKVEDIELP--VEKVDII 131 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEE-----EeecceEEEecC--ccceeEE
Confidence 579999999999999999999999999999988765 89998888877665432 22221111 344 3579999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG 405 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi 405 (597)
++-+.=+++ -.+.-+..+|-.=-+.|+|||.++=
T Consensus 132 vSEWMGy~L-l~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 132 VSEWMGYFL-LYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred eehhhhHHH-HHhhhhhhhhhhhhhccCCCceEcc
Confidence 997654333 1224455666666799999998854
No 147
>PRK03612 spermidine synthase; Provisional
Probab=98.51 E-value=3.1e-07 Score=103.41 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=74.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHH--HHhhhh---h-ccccccccceeehhhhccCCCCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTR--YEELKR---K-EEARPYRRNVFSAELRSQYEDKA 364 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er--~~~~~~---~-~~~~~~~~d~F~~dl~e~l~~~~ 364 (597)
++.+|||||||+|..+..+++.+. .+++++|+++++++.|+++ +..... . .+. .+...|....+....
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv-----~vi~~Da~~~l~~~~ 371 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRV-----TVVNDDAFNWLRKLA 371 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCce-----EEEEChHHHHHHhCC
Confidence 457899999999999998887653 7999999999999999983 322211 0 111 133334332222223
Q ss_pred CceeEEEEccchhhhcc-CHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 365 LELDLVSCQFCIHYSFE-SVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 365 ~sFDvVi~~~vLh~lFe-s~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
++||+|++......... ..---..+++.++++|||||.+++...
T Consensus 372 ~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~ 416 (521)
T PRK03612 372 EKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST 416 (521)
T ss_pred CCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence 57999999754332100 000124689999999999999998654
No 148
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.50 E-value=7.8e-07 Score=93.93 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=70.9
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|+++....+... .. +...+..+......++||+|+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~-v~-----~~~~D~~~~~~~~~~~~D~Vv 245 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTN-VQ-----FQALDSTQFATAQGEVPDLVL 245 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCc-eE-----EEEcCHHHHHHhcCCCCeEEE
Confidence 35789999999999999999877 599999999999999999987766532 21 344443222211224699999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR 418 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~ 418 (597)
+.-.-.-+ ...+++.+ ..++|++.+++++ ++..+...+.
T Consensus 246 ~dPPr~G~------~~~~~~~l-~~~~~~~ivyvsc-~p~t~~rd~~ 284 (315)
T PRK03522 246 VNPPRRGI------GKELCDYL-SQMAPRFILYSSC-NAQTMAKDLA 284 (315)
T ss_pred ECCCCCCc------cHHHHHHH-HHcCCCeEEEEEC-CcccchhHHh
Confidence 87331100 11222222 3367877666655 4444444343
No 149
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.50 E-value=4.9e-06 Score=88.27 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=55.8
Q ss_pred CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhh-hhhcccccccccee-ehh---hhccCCCCCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEEL-KRKEEARPYRRNVF-SAE---LRSQYEDKAL 365 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~-~~~~~~~~~~~d~F-~~d---l~e~l~~~~~ 365 (597)
.+.+|||||||+|.....++.. ...+++|+|+++.+++.|++++... +...+.. +. ..+ +...+....+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~-----~~~~~~~~~i~~~i~~~~~ 188 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIR-----LRLQKDSKAIFKGIIHKNE 188 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEE-----EEEccchhhhhhcccccCC
Confidence 5689999999999877665543 2358999999999999999998876 3433221 11 111 2222222345
Q ss_pred ceeEEEEccchhh
Q psy17742 366 ELDLVSCQFCIHY 378 (597)
Q Consensus 366 sFDvVi~~~vLh~ 378 (597)
+||+|+|+--+|-
T Consensus 189 ~fDlivcNPPf~~ 201 (321)
T PRK11727 189 RFDATLCNPPFHA 201 (321)
T ss_pred ceEEEEeCCCCcC
Confidence 7999999977654
No 150
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.49 E-value=1.3e-06 Score=88.29 Aligned_cols=97 Identities=22% Similarity=0.255 Sum_probs=72.2
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
+..+|||||+|.|.++..+++.. ..+++..|+ |..++.+++ ..+.. +...|+.+.+|. +|+|
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~-----~~~gd~f~~~P~----~D~~ 162 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVE-----FVPGDFFDPLPV----ADVY 162 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEE-----EEES-TTTCCSS----ESEE
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccc-----cccccHHhhhcc----ccce
Confidence 45789999999999999987653 358999999 788888887 11111 233333334442 9999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCC--cEEEEEe
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPG--GFFVGTV 407 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPG--G~fIit~ 407 (597)
++..+||.. +.++...+|+++++.|+|| |+|++.-
T Consensus 163 ~l~~vLh~~--~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 163 LLRHVLHDW--SDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp EEESSGGGS---HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred eeehhhhhc--chHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 999999996 6688999999999999999 9998853
No 151
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=1.1e-06 Score=89.35 Aligned_cols=115 Identities=18% Similarity=0.287 Sum_probs=90.1
Q ss_pred CCCCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742 290 LGSPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL 367 (597)
Q Consensus 290 ~~~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF 367 (597)
..++.+|||.|.|+|.++..++.. +..+|+..|+-++..+.|++++...+..+... ....|..+..... .|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~-----~~~~Dv~~~~~~~--~v 164 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVT-----LKLGDVREGIDEE--DV 164 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceE-----EEecccccccccc--cc
Confidence 348899999999999999998742 34699999999999999999998876554331 3334444433332 59
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhh
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRH 420 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~ 420 (597)
|+|+. +.+++..++..++++|||||.+++-.|..+.+.+.+...
T Consensus 165 Dav~L---------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l 208 (256)
T COG2519 165 DAVFL---------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEAL 208 (256)
T ss_pred CEEEE---------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH
Confidence 98865 337888999999999999999999999998887766554
No 152
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.47 E-value=1.2e-06 Score=84.84 Aligned_cols=132 Identities=17% Similarity=0.214 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHhhccc---CCCCCCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhh--hcc
Q psy17742 270 NWTKSMLIDEFLTRCKS---SQPLGSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKR--KEE 343 (597)
Q Consensus 270 nwvKs~LI~~~l~~l~~---~~~~~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~--~~~ 343 (597)
-|--+.++..|+..... .....++.+|||||||+|.....++.. +..+|+..|..+ .++.++.+...+.. ...
T Consensus 20 vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~ 98 (173)
T PF10294_consen 20 VWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGR 98 (173)
T ss_dssp ---HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-------
T ss_pred EechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccccc
Confidence 35445555555544210 011235789999999999988888877 567999999999 88988888766541 111
Q ss_pred ccccccceeeh--hhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 344 ARPYRRNVFSA--ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 344 ~~~~~~d~F~~--dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
.. ...+.- +...... ...+||+|++..++..- .....+++-+.++|+|+|.+++.....
T Consensus 99 v~---v~~L~Wg~~~~~~~~-~~~~~D~IlasDv~Y~~----~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 99 VS---VRPLDWGDELDSDLL-EPHSFDVILASDVLYDE----ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp -E---EEE--TTS-HHHHHH-S-SSBSEEEEES--S-G----GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred cc---CcEEEecCccccccc-ccccCCEEEEecccchH----HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 10 001111 0111111 12469999999998654 677889999999999999888876544
No 153
>PLN02672 methionine S-methyltransferase
Probab=98.43 E-value=1e-06 Score=105.69 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=78.3
Q ss_pred CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhh---------------ccccccccceeehhh
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRK---------------EEARPYRRNVFSAEL 356 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~---------------~~~~~~~~d~F~~dl 356 (597)
+.+|||||||+|..+..++... ..+|+|+|+|+.+++.|+++...+... .+. .++..|+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV-----~f~~sDl 193 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRV-----EFYESDL 193 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccE-----EEEECch
Confidence 4689999999999999988754 368999999999999999988754321 111 2445555
Q ss_pred hccCCCCCCceeEEEEccc--------------hh-------h-------hc------cCHHHHHHHHHHHHHhccCCcE
Q psy17742 357 RSQYEDKALELDLVSCQFC--------------IH-------Y-------SF------ESVQQARCMLKNAAECLKPGGF 402 (597)
Q Consensus 357 ~e~l~~~~~sFDvVi~~~v--------------Lh-------~-------lF------es~~d~~~~L~~i~rlLKPGG~ 402 (597)
...+.....+||+|+++-- .. | ++ ....-.++++.++.++|+|||+
T Consensus 194 ~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~ 273 (1082)
T PLN02672 194 LGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGI 273 (1082)
T ss_pred hhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCE
Confidence 4444332236999999622 00 0 00 0112247788899999999999
Q ss_pred EEEEeCCh
Q psy17742 403 FVGTVPDS 410 (597)
Q Consensus 403 fIit~pn~ 410 (597)
+++.+-..
T Consensus 274 l~lEiG~~ 281 (1082)
T PLN02672 274 MIFNMGGR 281 (1082)
T ss_pred EEEEECcc
Confidence 99988655
No 154
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.40 E-value=1.3e-06 Score=86.65 Aligned_cols=113 Identities=15% Similarity=0.178 Sum_probs=71.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
+...|-|+|||.+.++..+. .+ ..|...|+-... + .+..+|+ ...|.++++.|+++
T Consensus 72 ~~~viaD~GCGdA~la~~~~-~~-~~V~SfDLva~n---------~------------~Vtacdi-a~vPL~~~svDv~V 127 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVP-NK-HKVHSFDLVAPN---------P------------RVTACDI-ANVPLEDESVDVAV 127 (219)
T ss_dssp TTS-EEEES-TT-HHHHH---S----EEEEESS-SS---------T------------TEEES-T-TS-S--TT-EEEEE
T ss_pred CCEEEEECCCchHHHHHhcc-cC-ceEEEeeccCCC---------C------------CEEEecC-ccCcCCCCceeEEE
Confidence 35789999999999996543 33 379999986420 0 0233333 44555667899999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceee
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDF 451 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F 451 (597)
+..+|.. .++..+|+++.|+|||||.|.+.-..+.
T Consensus 128 fcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV~SR---------------------------------------- 162 (219)
T PF05148_consen 128 FCLSLMG-----TNWPDFIREANRVLKPGGILKIAEVKSR---------------------------------------- 162 (219)
T ss_dssp EES---S-----S-HHHHHHHHHHHEEEEEEEEEEEEGGG----------------------------------------
T ss_pred EEhhhhC-----CCcHHHHHHHHheeccCcEEEEEEeccc----------------------------------------
Confidence 9888855 4889999999999999999998643221
Q ss_pred eccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742 452 NLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE 484 (597)
Q Consensus 452 ~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~ 484 (597)
+.+.+.|.+.++..||+++...
T Consensus 163 -----------f~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 163 -----------FENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp ------------S-HHHHHHHHHCTTEEEEEEE
T ss_pred -----------CcCHHHHHHHHHHCCCeEEecc
Confidence 1245778899999999999754
No 155
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.39 E-value=3.1e-06 Score=83.19 Aligned_cols=109 Identities=15% Similarity=0.053 Sum_probs=73.4
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc---CCCCCCcee
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ---YEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~---l~~~~~sFD 368 (597)
.+.+|||++||+|.+...++..|..+|+++|+++.+++.++++....+...+.. ++..|.... +......||
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~-----~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAE-----VVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEE-----EEehhHHHHHHHhhccCCCce
Confidence 468899999999999999999987799999999999999999887765432221 344443222 211112478
Q ss_pred EEEEccchhhhccCHHHHHHHHHHH--HHhccCCcEEEEEeCCh
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNA--AECLKPGGFFVGTVPDS 410 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i--~rlLKPGG~fIit~pn~ 410 (597)
+|+.---+.. .....++..+ ..+|++||.+++.....
T Consensus 124 vv~~DPPy~~-----~~~~~~l~~l~~~~~l~~~~iiv~E~~~~ 162 (189)
T TIGR00095 124 VIYLDPPFFN-----GALQALLELCENNWILEDTVLIVVEEDRE 162 (189)
T ss_pred EEEECcCCCC-----CcHHHHHHHHHHCCCCCCCeEEEEEecCC
Confidence 8877433321 1122333333 35799999999987654
No 156
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.36 E-value=1.3e-06 Score=91.18 Aligned_cols=112 Identities=19% Similarity=0.294 Sum_probs=72.5
Q ss_pred CCEEEEECCCCChh--H--HHHHhc-----CCCEEEEEeCChHHHHHHHHH-HHhhhhhccc----cccc----------
Q psy17742 293 PIKVLDMGSGKGGD--M--LKWING-----GVKHVVFADIASVSIEDCKTR-YEELKRKEEA----RPYR---------- 348 (597)
Q Consensus 293 ~~rVLDLGCGtG~~--l--~~la~~-----g~~~V~GIDiS~~mIe~A~er-~~~~~~~~~~----~~~~---------- 348 (597)
..+|+..||++|.- + ..+.+. ...+|+|+|||+.+|+.|++- |......... ..++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 48999999999982 2 223332 123799999999999999873 2111100000 0000
Q ss_pred ---------cceee-hhhhc-cCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 349 ---------RNVFS-AELRS-QYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 349 ---------~d~F~-~dl~e-~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
...|. .++.. .++. .+.||+|+|.+++.|+ +.+...++++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~-~~~fD~I~cRNvliyF--~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAV-PGPFDAIFCRNVMIYF--DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCcc-CCCcceeeHhhHHhcC--CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 00111 12332 2222 3579999999999986 56788999999999999999987753
No 157
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.36 E-value=2.4e-05 Score=83.03 Aligned_cols=189 Identities=10% Similarity=-0.017 Sum_probs=107.8
Q ss_pred CCCEEEEECCCCChhHHHHHh----cC-CCEEEEEeCChHHHHHHHHHHHhhh-hhccccccccceeehhhhccCCC--C
Q psy17742 292 SPIKVLDMGSGKGGDMLKWIN----GG-VKHVVFADIASVSIEDCKTRYEELK-RKEEARPYRRNVFSAELRSQYED--K 363 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~----~g-~~~V~GIDiS~~mIe~A~er~~~~~-~~~~~~~~~~d~F~~dl~e~l~~--~ 363 (597)
++..|+|+|||.|.-+..+++ .+ ...|+++|||..+|+.+.+++.... .......+.+++... ...++. .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~--l~~l~~~~~ 153 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG--LAWLKRPEN 153 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH--Hhhcccccc
Confidence 456899999999986554433 22 3479999999999999999887222 111111111222211 111211 1
Q ss_pred CCceeEEEEcc-chhhhccCHHHHHHHHHHHHH-hccCCcEEEEEeCCh---hHHHHHH---------------hhh---
Q psy17742 364 ALELDLVSCQF-CIHYSFESVQQARCMLKNAAE-CLKPGGFFVGTVPDS---NQIMARY---------------RRH--- 420 (597)
Q Consensus 364 ~~sFDvVi~~~-vLh~lFes~~d~~~~L~~i~r-lLKPGG~fIit~pn~---~~i~~~l---------------~~~--- 420 (597)
.....+|+..+ +|..+ +......+|+++++ .|+|||.|++.+--. ..+...+ ...
T Consensus 154 ~~~~r~~~flGSsiGNf--~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~d~~gvTa~FnlN~L~~~Nr~ 231 (319)
T TIGR03439 154 RSRPTTILWLGSSIGNF--SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYNDPGGVTRRFVLNGLVHANEI 231 (319)
T ss_pred cCCccEEEEeCccccCC--CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Confidence 12356776655 57775 45678899999999 999999998865322 2222221 111
Q ss_pred -ccCccC--CceEEEEecCCCC---------CCCCCcccceeeecccccc-ccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742 421 -QSASFG--NDVYQVQCLFDTS---------RPPPLFGAKYDFNLEGVVN-CPEFLVYFPLLERIAGEFGLKRILKE 484 (597)
Q Consensus 421 -~~~~fg--N~vy~I~F~~~~~---------d~~p~fG~~Y~F~L~d~Vn-~pEYlv~~e~L~~La~eaGfelV~~~ 484 (597)
....|. +.-+...|+.... .....-+..+.|.-.+.|. -.-|-++.+.+..+++.+||+++...
T Consensus 232 Lg~~~Fd~~~f~h~a~~n~~~~rie~~l~s~~~~~v~~~~~~f~~GE~I~te~S~Kyt~~~~~~l~~~aG~~~~~~W 308 (319)
T TIGR03439 232 LGSEAFREEDWEFLGEWDEELGRHEAFYIPKKDVSIGLEGVVIRKGEKIRFECSGKYDKDEREKLCQSAGLKVVDVW 308 (319)
T ss_pred hCccccCHHHcEEEEEEcCCCCeEEEEEEeCCcEEEcCceEEEcCCCEEEEEeeeCCCHHHHHHHHHHCCCeeeEEE
Confidence 111121 1112223332110 0001113345555445553 23578999999999999999998754
No 158
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.35 E-value=5.5e-06 Score=91.06 Aligned_cols=112 Identities=17% Similarity=0.094 Sum_probs=73.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhcc---CCCCCCcee
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ---YEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~---l~~~~~sFD 368 (597)
++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|++++...+..+.. ++..+..+. +.....+||
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~------~~~~d~~~~l~~~~~~~~~~D 364 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVE------FLAGTLETVLPKQPWAGQIPD 364 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceE------EEeCCHHHHHHHHHhcCCCCC
Confidence 45799999999999999988765 58999999999999999988766543211 444443222 222234699
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR 418 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~ 418 (597)
+|++.-.-- .-...+++.+.+ |+|+|.+++++ ++..+...+.
T Consensus 365 ~vi~dPPr~------G~~~~~l~~l~~-l~~~~ivyvsc-~p~tlard~~ 406 (431)
T TIGR00479 365 VLLLDPPRK------GCAAEVLRTIIE-LKPERIVYVSC-NPATLARDLE 406 (431)
T ss_pred EEEECcCCC------CCCHHHHHHHHh-cCCCEEEEEcC-CHHHHHHHHH
Confidence 998753210 112345555543 88988777754 4555544443
No 159
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.34 E-value=4.6e-06 Score=83.20 Aligned_cols=104 Identities=15% Similarity=0.220 Sum_probs=75.2
Q ss_pred CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh---ccCCC--CC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR---SQYED--KA 364 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~---e~l~~--~~ 364 (597)
+..+||+||||+|.-+..++..- ..+|+.+|+++...+.|++.+...+...+.. +...+.. ..+.. ..
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~-----~~~gda~~~l~~l~~~~~~ 119 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIE-----VIEGDALEVLPELANDGEE 119 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEE-----EEES-HHHHHHHHHHTTTT
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEE-----EEEeccHhhHHHHHhccCC
Confidence 45799999999999999988641 3599999999999999999998877654432 3333211 11211 12
Q ss_pred CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
++||+|+.-.. ..+....+..+.++|+|||.+++.-
T Consensus 120 ~~fD~VFiDa~-------K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 120 GQFDFVFIDAD-------KRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp TSEEEEEEEST-------GGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred CceeEEEEccc-------ccchhhHHHHHhhhccCCeEEEEcc
Confidence 57999987532 2455678888889999999999963
No 160
>PHA03412 putative methyltransferase; Provisional
Probab=98.34 E-value=1.6e-06 Score=88.07 Aligned_cols=97 Identities=14% Similarity=0.129 Sum_probs=66.3
Q ss_pred CCEEEEECCCCChhHHHHHhc----CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742 293 PIKVLDMGSGKGGDMLKWING----GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD 368 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~----g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD 368 (597)
+.+|||+|||+|.++..+++. ....|+|+|+++.+++.|+++.... .+...|+... .. .++||
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~-----------~~~~~D~~~~-~~-~~~FD 116 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEA-----------TWINADALTT-EF-DTLFD 116 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCC-----------EEEEcchhcc-cc-cCCcc
Confidence 579999999999999887653 2348999999999999999775321 1344443221 12 24799
Q ss_pred EEEEccchhhhc--------cCHHHHHHHHHHHHHhccCCcE
Q psy17742 369 LVSCQFCIHYSF--------ESVQQARCMLKNAAECLKPGGF 402 (597)
Q Consensus 369 vVi~~~vLh~lF--------es~~d~~~~L~~i~rlLKPGG~ 402 (597)
+|+++--++-+- ....-...++..+.+++++|+.
T Consensus 117 lIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 117 MAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred EEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 999985543210 0112356688999997777775
No 161
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.30 E-value=4.2e-06 Score=81.96 Aligned_cols=110 Identities=21% Similarity=0.241 Sum_probs=75.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc---cCCCCCCcee
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS---QYEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e---~l~~~~~sFD 368 (597)
.+.+||||-||+|......+..|+.+|+.||.++..+...++++...+...... .+..+... .+.....+||
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~-----v~~~d~~~~l~~~~~~~~~fD 116 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIR-----VIKGDAFKFLLKLAKKGEKFD 116 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEE-----EEESSHHHHHHHHHHCTS-EE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCccee-----eeccCHHHHHHhhcccCCCce
Confidence 578999999999999999999999999999999999999999998877665332 33333111 1211235799
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHH--HhccCCcEEEEEeCCh
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAA--ECLKPGGFFVGTVPDS 410 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~--rlLKPGG~fIit~pn~ 410 (597)
+|++---...- .....++..+. .+|+++|++++.....
T Consensus 117 iIflDPPY~~~----~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 117 IIFLDPPYAKG----LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEEE--STTSC----HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred EEEECCCcccc----hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 99886444331 11366777776 8999999999988655
No 162
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.28 E-value=2.6e-06 Score=86.25 Aligned_cols=97 Identities=20% Similarity=0.148 Sum_probs=60.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
.+.+|||+|||+|.++..+++.|..+|+|+|+++.|+....+........... .+. .+.. +.+...-..+|+++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~--ni~-~~~~---~~~~~d~~~~Dvsf 148 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERT--NIR-YVTP---ADIFPDFATFDVSF 148 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecC--Ccc-cCCH---hHcCCCceeeeEEE
Confidence 56799999999999999999988889999999999887622211110000000 000 1111 11111223588776
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+...+ +|..+.++|+| |.+++-+
T Consensus 149 iS~~~------------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 149 ISLIS------------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred eehHh------------HHHHHHHHhCc-CeEEEEc
Confidence 65322 47788999999 7766544
No 163
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.27 E-value=6.5e-06 Score=89.10 Aligned_cols=113 Identities=11% Similarity=0.045 Sum_probs=75.8
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|+++....+... . .++..+....+.....+||+|+
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~-~-----~~~~~d~~~~~~~~~~~~D~vi 305 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDN-L-----SFAALDSAKFATAQMSAPELVL 305 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCc-E-----EEEECCHHHHHHhcCCCCCEEE
Confidence 35789999999999999988776 699999999999999999987765432 1 1444443322221123599998
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR 419 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~ 419 (597)
+.-.--. -...+++.+. .++|++.++++. ++..+.+.+..
T Consensus 306 ~DPPr~G------~~~~~l~~l~-~~~p~~ivyvsc-~p~TlaRDl~~ 345 (374)
T TIGR02085 306 VNPPRRG------IGKELCDYLS-QMAPKFILYSSC-NAQTMAKDIAE 345 (374)
T ss_pred ECCCCCC------CcHHHHHHHH-hcCCCeEEEEEe-CHHHHHHHHHH
Confidence 8633211 1234455554 479988888776 56566555554
No 164
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.27 E-value=4.5e-06 Score=90.58 Aligned_cols=115 Identities=19% Similarity=0.234 Sum_probs=85.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc---cCCCCCCcee
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS---QYEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e---~l~~~~~sFD 368 (597)
.+++|||+-|=||+++...+..|..+|++||+|...|+.|++++.-++...... .++..|..+ .......+||
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~----~~i~~Dvf~~l~~~~~~g~~fD 292 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRH----RFIVGDVFKWLRKAERRGEKFD 292 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccce----eeehhhHHHHHHHHHhcCCccc
Confidence 378999999999999999999998899999999999999999998877643211 144444222 2223334899
Q ss_pred EEEEc---cc--hhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 369 LVSCQ---FC--IHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 369 vVi~~---~v--Lh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+|++- |+ =...|.-..+...++..+.++|+|||.+++++...
T Consensus 293 lIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 293 LIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99982 11 00112334678899999999999999999987655
No 165
>PLN02476 O-methyltransferase
Probab=98.27 E-value=7.8e-06 Score=85.08 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=76.0
Q ss_pred CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC-----CCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE-----DKA 364 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~-----~~~ 364 (597)
++.+|||||+|+|..+..++.. ...+|+++|.+++.++.|++.+...+...+.. +...+..+.++ ...
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~-----li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVN-----VKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEE-----EEEcCHHHHHHHHHhcccC
Confidence 4689999999999999987763 12479999999999999999998887654332 33333222111 112
Q ss_pred CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
++||+|+.-. ...+...+++.+.++|+|||.+++.
T Consensus 193 ~~FD~VFIDa-------~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 193 SSYDFAFVDA-------DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred CCCCEEEECC-------CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 5799998753 2356778899999999999999985
No 166
>KOG2904|consensus
Probab=98.26 E-value=1.2e-05 Score=82.46 Aligned_cols=113 Identities=21% Similarity=0.256 Sum_probs=79.1
Q ss_pred CCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
+..|||+|||+|..+..++.. +-..|+++|.|+.++..|.++....+.......+ ......+.....+...+++|+++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~-~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI-HNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE-ecccccccccccccccCceeEEe
Confidence 468999999999999887653 3468999999999999999998877665543100 00112222333334457899999
Q ss_pred Eccchhhhc------------------------cCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 372 CQFCIHYSF------------------------ESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 372 ~~~vLh~lF------------------------es~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
|+-- |++ +....+..++.-+.|+|+|||.+.+.+.
T Consensus 228 sNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 228 SNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred cCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 9732 111 2224456778888999999999999876
No 167
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.26 E-value=6.8e-05 Score=77.73 Aligned_cols=197 Identities=16% Similarity=0.160 Sum_probs=112.1
Q ss_pred hhhhhhHHHHHHHhccccccchhhccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc
Q psy17742 234 QEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING 313 (597)
Q Consensus 234 ~~~~~~~~Va~hYn~~~~~~~~~R~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~ 313 (597)
.+..+.+.++..+.+....+..+|. ....+|.+.|-..+. .......+.+||=-|||.|+++..++..
T Consensus 10 d~~kV~s~L~q~~RDWS~eg~~ER~--------~~~~~I~~~L~~~~p----~~~~~~~~~~VLVPGsGLGRLa~Eia~~ 77 (270)
T PF07942_consen 10 DMDKVRSTLKQFVRDWSSEGEEERD--------PCYSPILDELESLFP----PAGSDRSKIRVLVPGSGLGRLAWEIAKL 77 (270)
T ss_pred hHHHHHHHHHHHHhhCchhhHHHHH--------HHHHHHHHHHHHhhc----ccccCCCccEEEEcCCCcchHHHHHhhc
Confidence 3445556666666555444444443 112333333333222 1111224689999999999999999999
Q ss_pred CCCEEEEEeCChHHHHHHHHHHHhhhhhccc--------------------cccccc-----------eee---hhhhcc
Q psy17742 314 GVKHVVFADIASVSIEDCKTRYEELKRKEEA--------------------RPYRRN-----------VFS---AELRSQ 359 (597)
Q Consensus 314 g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~--------------------~~~~~d-----------~F~---~dl~e~ 359 (597)
|+ .+.|.|.|--|+-...--+......... ...+.| .|. .|..+.
T Consensus 78 G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~ 156 (270)
T PF07942_consen 78 GY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEV 156 (270)
T ss_pred cc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEe
Confidence 97 8999999999976544332210000000 000000 000 011112
Q ss_pred CCCC--CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCC
Q psy17742 360 YEDK--ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFD 437 (597)
Q Consensus 360 l~~~--~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~ 437 (597)
.... .++||+|+..|-+ .+..++...|+.|.++|||||++|=.-|- .|+.. .
T Consensus 157 y~~~~~~~~~d~VvT~FFI----DTA~Ni~~Yi~tI~~lLkpgG~WIN~GPL--------------lyh~~-------~- 210 (270)
T PF07942_consen 157 YGPDENKGSFDVVVTCFFI----DTAENIIEYIETIEHLLKPGGYWINFGPL--------------LYHFE-------P- 210 (270)
T ss_pred cCCcccCCcccEEEEEEEe----echHHHHHHHHHHHHHhccCCEEEecCCc--------------cccCC-------C-
Confidence 2222 3689999888766 44488999999999999999966532110 01100 0
Q ss_pred CCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEe
Q psy17742 438 TSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN 485 (597)
Q Consensus 438 ~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~ 485 (597)
.+.... .++. .+.++|..+++..||+++....
T Consensus 211 -------~~~~~~----~sve-----Ls~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 211 -------MSIPNE----MSVE-----LSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred -------CCCCCC----cccC-----CCHHHHHHHHHHCCCEEEEEEE
Confidence 000000 0122 6789999999999999997654
No 168
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.26 E-value=5e-06 Score=86.09 Aligned_cols=112 Identities=18% Similarity=0.260 Sum_probs=72.6
Q ss_pred CCCEEEEECCCCCh--hH--HHHHhcC------CCEEEEEeCChHHHHHHHHH-HHhhhh------hcc-c--ccccc--
Q psy17742 292 SPIKVLDMGSGKGG--DM--LKWINGG------VKHVVFADIASVSIEDCKTR-YEELKR------KEE-A--RPYRR-- 349 (597)
Q Consensus 292 ~~~rVLDLGCGtG~--~l--~~la~~g------~~~V~GIDiS~~mIe~A~er-~~~~~~------~~~-~--~~~~~-- 349 (597)
...+|+-+||++|. ++ ..+.+.. .-+|+|+|||..+|+.|+.- |..... ... . .....
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46899999999997 22 2222222 24899999999999999862 220100 000 0 00000
Q ss_pred c----------eee-hhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 350 N----------VFS-AELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 350 d----------~F~-~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
. .|. .++....+ ..+.||+|+|..+|-|+ +.+...++++.++..|+|||+|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfCRNVLIYF--d~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFCRNVLIYF--DEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEEcceEEee--CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 0 111 11222221 23569999999999997 6678889999999999999999884
No 169
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.24 E-value=7.1e-06 Score=85.71 Aligned_cols=113 Identities=23% Similarity=0.270 Sum_probs=76.9
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhc-cccccccceeehhhhccCC--CCCCcee
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE-EARPYRRNVFSAELRSQYE--DKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~-~~~~~~~d~F~~dl~e~l~--~~~~sFD 368 (597)
.+++|||+-|=+|+++...+..|..+|++||.|..+++.|++++.-++... ... +...|..+.+. ...++||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~-----~~~~Dvf~~l~~~~~~~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHR-----FIQGDVFKFLKRLKKGGRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEE-----EEES-HHHHHHHHHHTT-EE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceE-----EEecCHHHHHHHHhcCCCCC
Confidence 468999999999999999888888899999999999999999988776542 221 33333221111 1235799
Q ss_pred EEEEc---cchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 369 LVSCQ---FCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 369 vVi~~---~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+|++- |+= --|.-..+...++..+.++|+|||.|++++-+.
T Consensus 198 ~IIlDPPsF~k-~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 198 LIILDPPSFAK-SKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EEEE--SSEES-STCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred EEEECCCCCCC-CHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 99982 210 011113577889999999999999998877554
No 170
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=3.5e-06 Score=82.40 Aligned_cols=74 Identities=23% Similarity=0.237 Sum_probs=56.9
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
.+.+|||+|||||.++...+-.|...|+|+|+++++++.|+++..+..... .++..|+.. + .+.||.|+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v-------~f~~~dv~~-~---~~~~dtvi 113 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDV-------EFVVADVSD-F---RGKFDTVI 113 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCce-------EEEEcchhh-c---CCccceEE
Confidence 567899999999999999888898899999999999999999987733221 144443322 2 35699998
Q ss_pred Eccch
Q psy17742 372 CQFCI 376 (597)
Q Consensus 372 ~~~vL 376 (597)
++--+
T Consensus 114 mNPPF 118 (198)
T COG2263 114 MNPPF 118 (198)
T ss_pred ECCCC
Confidence 87544
No 171
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.22 E-value=1.5e-05 Score=79.71 Aligned_cols=123 Identities=18% Similarity=0.294 Sum_probs=88.8
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhh-hccCC-CCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAEL-RSQYE-DKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl-~e~l~-~~~~sFDv 369 (597)
...++|||||=+...... ..+.-.|+.||+.+.- .+ +...|. ..++| ...++||+
T Consensus 51 ~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~~----------~~-----------I~qqDFm~rplp~~~~e~Fdv 107 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQH----------PG-----------ILQQDFMERPLPKNESEKFDV 107 (219)
T ss_pred ccceEEeecccCCCCccc--ccCceeeEEeecCCCC----------CC-----------ceeeccccCCCCCCcccceeE
Confidence 347999999886554432 2343469999998631 11 233331 12343 23468999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcE-----EEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCC
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGF-----FVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPL 444 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~-----fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~ 444 (597)
|+|+.+|.|+ .+....-.+++.+++.|+|+|. |++..|.+..- |+
T Consensus 108 Is~SLVLNfV-P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~-------------NS---------------- 157 (219)
T PF11968_consen 108 ISLSLVLNFV-PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVT-------------NS---------------- 157 (219)
T ss_pred EEEEEEEeeC-CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhh-------------cc----------------
Confidence 9999999998 6777888999999999999999 99988887521 11
Q ss_pred cccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742 445 FGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE 484 (597)
Q Consensus 445 fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~ 484 (597)
.+.+.+.|.++++..||..+..+
T Consensus 158 -----------------Ry~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 158 -----------------RYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred -----------------cccCHHHHHHHHHhCCcEEEEEE
Confidence 12566889999999999999865
No 172
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.22 E-value=3.7e-06 Score=86.13 Aligned_cols=117 Identities=17% Similarity=0.251 Sum_probs=84.6
Q ss_pred CCCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh-ccCCC-CCCc
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR-SQYED-KALE 366 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~-e~l~~-~~~s 366 (597)
.+|.+|||.|.|+|.++..++.. ...+|+..|+.++.++.|++++...+...... +...|+. ..+.. ....
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~-----~~~~Dv~~~g~~~~~~~~ 113 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVT-----VHHRDVCEEGFDEELESD 113 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEE-----EEES-GGCG--STT-TTS
T ss_pred CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCce-----eEecceecccccccccCc
Confidence 48999999999999999988753 23599999999999999999999887754332 2333322 22311 1246
Q ss_pred eeEEEEccchhhhccCHHHHHHHHHHHHHhc-cCCcEEEEEeCChhHHHHHHhhhc
Q psy17742 367 LDLVSCQFCIHYSFESVQQARCMLKNAAECL-KPGGFFVGTVPDSNQIMARYRRHQ 421 (597)
Q Consensus 367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlL-KPGG~fIit~pn~~~i~~~l~~~~ 421 (597)
||.|+.- .+++..++..+.++| ||||+|++-.|+.+.+...+....
T Consensus 114 ~DavfLD---------lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~ 160 (247)
T PF08704_consen 114 FDAVFLD---------LPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALR 160 (247)
T ss_dssp EEEEEEE---------SSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccEEEEe---------CCCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHH
Confidence 9998653 266778999999999 999999999999988887666543
No 173
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.20 E-value=1e-05 Score=81.90 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=85.6
Q ss_pred CEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCceeE
Q psy17742 294 IKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALELDL 369 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sFDv 369 (597)
..+||||||.|.++..++... -..++|||+....+..|.++....+..+.. +++.| +...+.. .++.|-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlr------i~~~DA~~~l~~~~~-~~sl~~ 122 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLR------LLCGDAVEVLDYLIP-DGSLDK 122 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEE------EEcCCHHHHHHhcCC-CCCeeE
Confidence 579999999999999988765 357999999999999999998888773221 44443 3333433 357999
Q ss_pred EEEccchhhhccCHH-----HHHHHHHHHHHhccCCcEEEEEeCChhHHHH
Q psy17742 370 VSCQFCIHYSFESVQ-----QARCMLKNAAECLKPGGFFVGTVPDSNQIMA 415 (597)
Q Consensus 370 Vi~~~vLh~lFes~~-----d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~ 415 (597)
|..+|.=-|. .... -...+|+.+.+.|+|||.|.+.|-+.+....
T Consensus 123 I~i~FPDPWp-KkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 123 IYINFPDPWP-KKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred EEEECCCCCC-CccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 9998764332 1111 1257999999999999999999998877666
No 174
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.18 E-value=1.4e-05 Score=80.45 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=78.2
Q ss_pred CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceee-hhhhccCC-CCCCce
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFS-AELRSQYE-DKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~-~dl~e~l~-~~~~sF 367 (597)
++++||+||.+.|.-+..++..- ..+++.+|+++++++.|++++.+.+...+.. .+. .+..+.+. ...++|
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~-----~~~~gdal~~l~~~~~~~f 133 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIE-----LLLGGDALDVLSRLLDGSF 133 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEE-----EEecCcHHHHHHhccCCCc
Confidence 56899999999999888876542 3589999999999999999999988776532 222 23222222 234679
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+|+.-. ...+...+|..+.++|+|||.+++.
T Consensus 134 DliFIDa-------dK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 134 DLVFIDA-------DKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred cEEEEeC-------ChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 9998753 3356678999999999999999985
No 175
>KOG1269|consensus
Probab=98.15 E-value=7.8e-06 Score=88.07 Aligned_cols=153 Identities=18% Similarity=0.107 Sum_probs=103.1
Q ss_pred hhHHHHHHHhccccccchhhccc-----hhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHh
Q psy17742 238 LGQTVAEHYNQKKNVGTELRKNS-----RIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWIN 312 (597)
Q Consensus 238 ~~~~Va~hYn~~~~~~~~~R~~S-----~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~ 312 (597)
..+.++..||.....+...+..+ .+....+.-.|++...+..+... ..++..+||+|||-|+.......
T Consensus 57 ~~e~~~~~y~~~~dl~~~~w~~~~h~~~~~e~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~g~~~~~~~i~~ 130 (364)
T KOG1269|consen 57 LPEQIAKYYNNSTDLYERNWGQSFHFGRIPEGNSNEMFWIRHEGIVALRES------CFPGSKVLDVGTGVGGPSRYIAV 130 (364)
T ss_pred cchHHHHHhcccchhhhhhhccchhccCccchhHHHHHHHhhcchHHHhhc------CcccccccccCcCcCchhHHHHH
Confidence 44567777776543333222111 12222222246555444444332 22556899999999999998887
Q ss_pred cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHHHHHHHHH
Q psy17742 313 GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKN 392 (597)
Q Consensus 313 ~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~ 392 (597)
.+...++|+|.++..+..+.............. +...+... -+..+..||.+.+..+..|+ ++...++++
T Consensus 131 f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~-----~~~~~~~~-~~fedn~fd~v~~ld~~~~~----~~~~~~y~E 200 (364)
T KOG1269|consen 131 FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCN-----FVVADFGK-MPFEDNTFDGVRFLEVVCHA----PDLEKVYAE 200 (364)
T ss_pred hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcc-----eehhhhhc-CCCCccccCcEEEEeecccC----CcHHHHHHH
Confidence 776799999999999988888766666555442 22222222 22334579999999999998 899999999
Q ss_pred HHHhccCCcEEEEE
Q psy17742 393 AAECLKPGGFFVGT 406 (597)
Q Consensus 393 i~rlLKPGG~fIit 406 (597)
++++|+|||+++.-
T Consensus 201 i~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 201 IYRVLKPGGLFIVK 214 (364)
T ss_pred HhcccCCCceEEeH
Confidence 99999999999874
No 176
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.12 E-value=1.9e-06 Score=94.76 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=69.8
Q ss_pred CEEEEECCCCChhHHHHHhcCCCEEE--EEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 294 IKVLDMGSGKGGDMLKWINGGVKHVV--FADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g~~~V~--GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
-.+||+|||.|.++..++..++..+. --|..+..++.|.+|.-.. .+..-..+.||.+++.||+|.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa------------~~~~~~s~rLPfp~~~fDmvH 186 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPA------------MIGVLGSQRLPFPSNAFDMVH 186 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcch------------hhhhhccccccCCccchhhhh
Confidence 46899999999999999998852211 1255556677776653111 111111345777778899999
Q ss_pred Eccch-hhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 372 CQFCI-HYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 372 ~~~vL-h~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
|..++ .+. ..-..+|-++.|+|+|||+|+.+.|-.
T Consensus 187 csrc~i~W~----~~~g~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 187 CSRCLIPWH----PNDGFLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred cccccccch----hcccceeehhhhhhccCceEEecCCcc
Confidence 99884 443 222468999999999999999998754
No 177
>KOG3045|consensus
Probab=98.12 E-value=1.2e-05 Score=81.91 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=62.8
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
....|-|+|||.+.++. .. ...|..+|+-..- . ++...|+.. +|..+++.|+++
T Consensus 180 ~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a~~------------~---------~V~~cDm~~-vPl~d~svDvaV 233 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SE-RHKVHSFDLVAVN------------E---------RVIACDMRN-VPLEDESVDVAV 233 (325)
T ss_pred CceEEEecccchhhhhh---cc-ccceeeeeeecCC------------C---------ceeeccccC-CcCccCcccEEE
Confidence 46789999999998876 22 2478889985420 0 133344333 566667899998
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
+..+|.- .++..++++++|+|+|||.+++.-.
T Consensus 234 ~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 234 FCLSLMG-----TNLADFIKEANRILKPGGLLYIAEV 265 (325)
T ss_pred eeHhhhc-----ccHHHHHHHHHHHhccCceEEEEeh
Confidence 8777644 5889999999999999999998643
No 178
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.10 E-value=1.5e-05 Score=76.93 Aligned_cols=107 Identities=28% Similarity=0.374 Sum_probs=62.9
Q ss_pred CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh----hhccCCCCCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----LRSQYEDKAL 365 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d----l~e~l~~~~~ 365 (597)
.+.+||||||++|+++..++..+ ...|+|+|+.+.. .... .....++.+... +...+....+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---------~~~~---~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---------PLQN---VSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---------S-TT---EEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc---------cccc---eeeeecccchhhHHHhhhhhcccccc
Confidence 45899999999999999998887 5699999998761 0000 011112233221 2222322235
Q ss_pred ceeEEEEccchhhh-------ccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 366 ELDLVSCQFCIHYS-------FESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 366 sFDvVi~~~vLh~l-------Fes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+||+|+|-.+.... +.+..-....|.-+...|+|||.|++.+...
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 79999997632111 0111334455666668899999999987654
No 179
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.09 E-value=1.6e-05 Score=84.52 Aligned_cols=110 Identities=24% Similarity=0.183 Sum_probs=80.4
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
+|..|||==||||+++....-.|. +++|+|++..|+.-|+.++...+..... .........++.+..+||.|+
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~------~~~~~Da~~lpl~~~~vdaIa 269 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYP------VLKVLDATNLPLRDNSVDAIA 269 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCcee------EEEecccccCCCCCCccceEE
Confidence 678999999999999999888885 9999999999999999998877643321 122212234444444699999
Q ss_pred Eccchhhh----ccC-HHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 372 CQFCIHYS----FES-VQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 372 ~~~vLh~l----Fes-~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
+---..-. -.. .+-...+|+.++++||+||++++..|
T Consensus 270 tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 270 TDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 84221110 000 23468899999999999999999988
No 180
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.08 E-value=3.4e-05 Score=66.40 Aligned_cols=104 Identities=23% Similarity=0.242 Sum_probs=66.5
Q ss_pred EEEECCCCChhH--HHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc-cCCCCC-CceeEEE
Q psy17742 296 VLDMGSGKGGDM--LKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS-QYEDKA-LELDLVS 371 (597)
Q Consensus 296 VLDLGCGtG~~l--~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e-~l~~~~-~sFDvVi 371 (597)
+||+|||+|... ..+...+ ..++|+|+++.++..++..... ...... .....+... .++... ..||++.
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRG-AYVVGVDLSPEMLALARARAEG-AGLGLV-----DFVVADALGGVLPFEDSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCC-ceEEEEeCCHHHHHHHHhhhhh-cCCCce-----EEEEeccccCCCCCCCCCceeEEe
Confidence 999999999965 2222222 3799999999999985554432 111000 122222222 133333 3699994
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN 411 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~ 411 (597)
+...+++. . ....+.++.+.|+|+|.+++......
T Consensus 125 ~~~~~~~~----~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 125 SLLVLHLL----P-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred eeeehhcC----C-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 44444443 2 78899999999999999999887653
No 181
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.05 E-value=2.1e-05 Score=87.18 Aligned_cols=103 Identities=19% Similarity=0.296 Sum_probs=68.2
Q ss_pred CCEEEEECCCCChhHHHHHhcC-----CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGG-----VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL 367 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g-----~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF 367 (597)
+..|||||||+|.++...++++ ..+|++|+-++.++...+++....+...+.+ ++..++. .+..+ .++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~-----vi~~d~r-~v~lp-ekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVT-----VIHGDMR-EVELP-EKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEE-----EEES-TT-TSCHS-S-E
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEE-----EEeCccc-CCCCC-Cce
Confidence 5789999999999998776664 4699999999999988877755555543332 4555433 33333 379
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEE
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fI 404 (597)
|+|++=.. .. |...+-....|..+.+.|||||.+|
T Consensus 260 DIIVSElL-Gs-fg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 260 DIIVSELL-GS-FGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEEE----BT-TBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred eEEEEecc-CC-ccccccCHHHHHHHHhhcCCCCEEe
Confidence 99998432 11 2222344567889999999999885
No 182
>PLN02823 spermine synthase
Probab=98.03 E-value=2e-05 Score=84.14 Aligned_cols=111 Identities=19% Similarity=0.341 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhh---hccccccccceeehhhhccCCCCCCce
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKR---KEEARPYRRNVFSAELRSQYEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~---~~~~~~~~~d~F~~dl~e~l~~~~~sF 367 (597)
.+.+||.||+|.|..+..+++. +..+++.+|+++.+++.|++.+..... ..+. .+...|....+....++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv-----~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRL-----ELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCce-----EEEEChhHHHHhhCCCCc
Confidence 3578999999999999987775 467899999999999999988653221 1111 133333223333334579
Q ss_pred eEEEEccchhhhccCHH--HHHHHHH-HHHHhccCCcEEEEEe
Q psy17742 368 DLVSCQFCIHYSFESVQ--QARCMLK-NAAECLKPGGFFVGTV 407 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~--d~~~~L~-~i~rlLKPGG~fIit~ 407 (597)
|+|++-..=...-.... --..+++ .+.++|+|||+|++..
T Consensus 178 DvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 178 DVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 99998521100000000 1236787 8999999999998764
No 183
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.03 E-value=4.2e-05 Score=83.16 Aligned_cols=106 Identities=24% Similarity=0.303 Sum_probs=76.7
Q ss_pred CCEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
+.+|||++||+|..+..++. .+..+|+++|+++.+++.++++...++..... ++..|....+.. .++||+|+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~------v~~~Da~~~l~~-~~~fD~V~ 130 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEK------VFNKDANALLHE-ERKFDVVD 130 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceE------EEhhhHHHHHhh-cCCCCEEE
Confidence 36899999999999999865 45568999999999999999988766543221 444443322221 24699998
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i 413 (597)
+.- . .....++..+.+.+++||+++++..+...+
T Consensus 131 lDP-~-------Gs~~~~l~~al~~~~~~gilyvSAtD~~~L 164 (382)
T PRK04338 131 IDP-F-------GSPAPFLDSAIRSVKRGGLLCVTATDTAPL 164 (382)
T ss_pred ECC-C-------CCcHHHHHHHHHHhcCCCEEEEEecCchhh
Confidence 852 2 123467888778899999999997666554
No 184
>KOG3178|consensus
Probab=97.98 E-value=2e-05 Score=83.60 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=78.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
.-...+|+|.|.|..+..+.. .+.++-|+++....|..+...+. .+.. .+..+..+..|. -|+|+
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-~gV~---------~v~gdmfq~~P~----~daI~ 241 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-PGVE---------HVAGDMFQDTPK----GDAIW 241 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-CCcc---------eecccccccCCC----cCeEE
Confidence 347899999999999999887 55689999999999888887764 3322 222222233543 57999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
++++|||. +.++..++|++|++.|+|||.+++.-.
T Consensus 242 mkWiLhdw--tDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 242 MKWILHDW--TDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred EEeecccC--ChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 99999998 778999999999999999999988644
No 185
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.95 E-value=7.6e-05 Score=76.57 Aligned_cols=103 Identities=12% Similarity=0.010 Sum_probs=74.1
Q ss_pred CCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhc---cCCC---C
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS---QYED---K 363 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e---~l~~---~ 363 (597)
+..+||+||+++|.-+..++..- ..+|+.+|+++...+.|++.+...+...+.. +...+..+ .+.. .
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~-----~~~G~a~e~L~~l~~~~~~ 153 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKID-----FREGPALPVLDQMIEDGKY 153 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceE-----EEeccHHHHHHHHHhcccc
Confidence 45789999999999888776531 3589999999999999999998877654432 22222111 1111 1
Q ss_pred CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 364 ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 364 ~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
.++||+|+.-.. .......+..+.++|+|||.+++.
T Consensus 154 ~~~fD~iFiDad-------K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 154 HGTFDFIFVDAD-------KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred CCcccEEEecCC-------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 257999987532 345667888889999999999884
No 186
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.93 E-value=5.8e-05 Score=81.83 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=77.8
Q ss_pred CCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
+.+|||+.||+|..++.++.. |..+|+++|+++.+++.++++...++..... ++..|....+.....+||+|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~------v~~~Da~~~l~~~~~~fDvI 118 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIE------VPNEDAANVLRYRNRKFHVI 118 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEE------EEchhHHHHHHHhCCCCCEE
Confidence 368999999999999998876 6789999999999999999998766543211 44444332222222469999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ 412 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~ 412 (597)
..-- + ..+..++..+.+.+++||++.+|..|...
T Consensus 119 dlDP-f-------Gs~~~fld~al~~~~~~glL~vTaTD~~~ 152 (374)
T TIGR00308 119 DIDP-F-------GTPAPFVDSAIQASAERGLLLVTATDTSA 152 (374)
T ss_pred EeCC-C-------CCcHHHHHHHHHhcccCCEEEEEecccHH
Confidence 7743 3 22346899999999999999999655543
No 187
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.90 E-value=6.4e-05 Score=84.57 Aligned_cols=118 Identities=14% Similarity=0.083 Sum_probs=84.3
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCce
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sF 367 (597)
.+..+||||||.|.++..++... -..++|+|+....+..|.++....+..+.. ++..+ +...++. +++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~------~~~~~~~~~~~~~~~--~sv 418 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFL------LFPNNLDLILNDLPN--NSL 418 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEE------EEcCCHHHHHHhcCc--ccc
Confidence 45789999999999999988764 357999999999999888877665544321 22222 2233443 569
Q ss_pred eEEEEccchhhhcc--CHH---HHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742 368 DLVSCQFCIHYSFE--SVQ---QARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR 418 (597)
Q Consensus 368 DvVi~~~vLh~lFe--s~~---d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~ 418 (597)
|.|+.+|.=-|. . |.. --..+|+.+.++|||||.|.+.+-+.+.....+.
T Consensus 419 ~~i~i~FPDPWp-Kkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~ 473 (506)
T PRK01544 419 DGIYILFPDPWI-KNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIE 473 (506)
T ss_pred cEEEEECCCCCC-CCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH
Confidence 999998764331 0 001 1257999999999999999999988876655443
No 188
>PRK04148 hypothetical protein; Provisional
Probab=97.87 E-value=8.5e-05 Score=69.34 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=64.2
Q ss_pred CCCEEEEECCCCCh-hHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGG-DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~-~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+|||||||.|. .+..|.+.|. .|+|+|+++..++.|+++... ....|.|..++ .--+.+|+|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~--------~v~dDlf~p~~-----~~y~~a~li 81 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLN--------AFVDDLFNPNL-----EIYKNAKLI 81 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCe--------EEECcCCCCCH-----HHHhcCCEE
Confidence 45789999999997 7777888785 999999999999988776311 11123343321 112348999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhH
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ 412 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~ 412 (597)
.+... ..++...+.++++.+ |.-+++.....+.
T Consensus 82 ysirp-------p~el~~~~~~la~~~--~~~~~i~~l~~e~ 114 (134)
T PRK04148 82 YSIRP-------PRDLQPFILELAKKI--NVPLIIKPLSGEE 114 (134)
T ss_pred EEeCC-------CHHHHHHHHHHHHHc--CCCEEEEcCCCCC
Confidence 88643 255666666666654 4556666555543
No 189
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.85 E-value=7.2e-05 Score=74.40 Aligned_cols=98 Identities=24% Similarity=0.206 Sum_probs=67.2
Q ss_pred CCCEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++..|||+.||-|.++..+++ .....|+++|++|.+++.++++...++...... .+..|....++ .+.||-|
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~-----~~~~D~~~~~~--~~~~drv 173 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIE-----VINGDAREFLP--EGKFDRV 173 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEE-----EEES-GGG-----TT-EEEE
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEE-----EEcCCHHHhcC--ccccCEE
Confidence 578999999999999999887 234689999999999999999988877664331 44555443333 4679999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEE
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fI 404 (597)
++...- ....+|..+.+++++||++-
T Consensus 174 im~lp~--------~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 174 IMNLPE--------SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EE--TS--------SGGGGHHHHHHHEEEEEEEE
T ss_pred EECChH--------HHHHHHHHHHHHhcCCcEEE
Confidence 987432 22357888999999999874
No 190
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.84 E-value=3.9e-05 Score=77.23 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=74.7
Q ss_pred CCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh-ccccccccceeehh---hhccCCCCCCc
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK-EEARPYRRNVFSAE---LRSQYEDKALE 366 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~-~~~~~~~~d~F~~d---l~e~l~~~~~s 366 (597)
+.+.+|||.+.|-|..++..++.|..+|+-++.++..|+.|.-+-=..... ... .++..| +.+.+++ .+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i-----~iilGD~~e~V~~~~D--~s 205 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAI-----KIILGDAYEVVKDFDD--ES 205 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccccccc-----EEecccHHHHHhcCCc--cc
Confidence 368999999999999999999999779999999999999887531111110 001 122222 3455655 46
Q ss_pred eeEEEEccc-hhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 367 LDLVSCQFC-IHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 367 FDvVi~~~v-Lh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
||+|+---- |.+. .+--...+.++++|+|||||.++-=+-+
T Consensus 206 fDaIiHDPPRfS~A--geLYseefY~El~RiLkrgGrlFHYvG~ 247 (287)
T COG2521 206 FDAIIHDPPRFSLA--GELYSEEFYRELYRILKRGGRLFHYVGN 247 (287)
T ss_pred cceEeeCCCccchh--hhHhHHHHHHHHHHHcCcCCcEEEEeCC
Confidence 999976321 1111 1224578999999999999998764433
No 191
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.84 E-value=0.00012 Score=74.90 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=39.6
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE 336 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~ 336 (597)
++.+|||||||+|.++..++..+ ..|+++|+++.+++.+++++.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~ 72 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLS 72 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhC
Confidence 56899999999999999999887 479999999999999988764
No 192
>KOG1331|consensus
Probab=97.82 E-value=2.1e-05 Score=81.18 Aligned_cols=102 Identities=18% Similarity=0.132 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
.+..+||+|||.|.++..- ....++|.|++...+..|++..... .+.+| ...++....+||.++
T Consensus 45 ~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~~~~~------------~~~ad-~l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRSGGDN------------VCRAD-ALKLPFREESFDAAL 108 (293)
T ss_pred CcceeeecccCCcccCcCC---CcceeeecchhhhhccccccCCCce------------eehhh-hhcCCCCCCccccch
Confidence 3678999999999877522 2347899999999888887643220 22222 123444456799999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+..++||+ .+......+++++.+.|+|||..++.+...
T Consensus 109 siavihhl-sT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 109 SIAVIHHL-STRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhhhhhhh-hhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 99999997 677888999999999999999988876544
No 193
>KOG3191|consensus
Probab=97.81 E-value=0.00024 Score=69.30 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=79.0
Q ss_pred CCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
..-+||||||+|..+..+++. +...+.++||++.+++...+.+..++... +....|+...+.. ++.|++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~-------~~V~tdl~~~l~~--~~VDvL 114 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHI-------DVVRTDLLSGLRN--ESVDVL 114 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCcc-------ceeehhHHhhhcc--CCccEE
Confidence 577999999999988887654 34578999999999998888766654432 2455565555654 568888
Q ss_pred EEccch----------h-----hh--ccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHH
Q psy17742 371 SCQFCI----------H-----YS--FESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM 414 (597)
Q Consensus 371 i~~~vL----------h-----~l--Fes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~ 414 (597)
+.+-.. + |. -...+-..+++..+-.+|.|.|+|++.....+...
T Consensus 115 vfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ 175 (209)
T KOG3191|consen 115 VFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPK 175 (209)
T ss_pred EECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHH
Confidence 775211 1 11 01122367889999999999999998887664333
No 194
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=97.81 E-value=6.3e-05 Score=77.30 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=54.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.+++++.... +. .+...|.. .++.+ .||.|+
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~---~v-----~ii~~D~~-~~~~~--~~d~Vv 96 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAG---NV-----EIIEGDAL-KVDLP--EFNKVV 96 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCC---CE-----EEEEeccc-cCCch--hceEEE
Confidence 56899999999999999998886 589999999999999998875411 11 13333322 22332 489999
Q ss_pred Eccchh
Q psy17742 372 CQFCIH 377 (597)
Q Consensus 372 ~~~vLh 377 (597)
++...+
T Consensus 97 ~NlPy~ 102 (258)
T PRK14896 97 SNLPYQ 102 (258)
T ss_pred EcCCcc
Confidence 986653
No 195
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.81 E-value=4.9e-05 Score=77.81 Aligned_cols=113 Identities=17% Similarity=0.259 Sum_probs=72.6
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhh---ccccccccceeehhhhccCCCCCC-c
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRK---EEARPYRRNVFSAELRSQYEDKAL-E 366 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~---~~~~~~~~d~F~~dl~e~l~~~~~-s 366 (597)
.+.+||=||-|.|+.+..+++.. ..++++|||++.+++.|++.+...... .+. .....|-...+..... +
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~-----~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRV-----RIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTE-----EEEESTHHHHHHTSSST-
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCce-----EEEEhhhHHHHHhccCCc
Confidence 46899999999999999988765 679999999999999999977654322 111 1333332222222233 7
Q ss_pred eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
||+|+.-..-.......---..+++.++++|+|||+++....+
T Consensus 151 yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 151 YDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 9999873221000000001257999999999999999987633
No 196
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.81 E-value=0.00013 Score=81.26 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=76.1
Q ss_pred CCCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD 368 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD 368 (597)
.++.+|||+|||.|+=+..++.. +-..|+++|+++.-++.+++++...+..+.. ....|.........+.||
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~------v~~~D~~~~~~~~~~~fD 185 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVA------LTHFDGRVFGAALPETFD 185 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEE------EEeCchhhhhhhchhhcC
Confidence 36789999999999988776653 2248999999999999999998887665421 233321111011124699
Q ss_pred EEE----Eccc--hhhhcc-----CH-------HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 369 LVS----CQFC--IHYSFE-----SV-------QQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 369 vVi----~~~v--Lh~lFe-----s~-------~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
.|+ |+.. +..-.+ +. .-...+|.++.++|||||++|-+|...
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 999 4422 211100 01 112789999999999999999887653
No 197
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.80 E-value=7.4e-05 Score=78.04 Aligned_cols=112 Identities=17% Similarity=0.242 Sum_probs=76.6
Q ss_pred CEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742 294 IKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC 372 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~ 372 (597)
.+||-||.|.|+.++.+++.. ..+++.|||.+..|+.|++.+........ .+... ....|-.+.+.....+||+|++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~-i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGAD-DPRVE-IIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccC-CCceE-EEeccHHHHHHhCCCcCCEEEE
Confidence 699999999999999988776 68999999999999999998776542211 00011 2222322333333347999998
Q ss_pred ccchhhhccCHH--HHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 373 QFCIHYSFESVQ--QARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 373 ~~vLh~lFes~~--d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
-..=. . ..-+ --..+++.++++|+++|+++...-+
T Consensus 156 D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 156 DSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred cCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 53221 0 0000 1257999999999999999998433
No 198
>KOG1500|consensus
Probab=97.79 E-value=0.00012 Score=76.90 Aligned_cols=106 Identities=18% Similarity=0.154 Sum_probs=73.4
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
.+..|||+|||.|.++...+.+|.++|++++.| +|.+.|++....+....+. ....+-.+.+..+ ++.|+|+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rI------tVI~GKiEdieLP-Ek~DviI 248 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRI------TVIPGKIEDIELP-EKVDVII 248 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceE------EEccCccccccCc-hhccEEE
Confidence 578899999999999999999999999999965 6888998887766444332 1111222333333 4799998
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+- .+.|+.-++.-+ .-.-.+++.|||.|..+-|+
T Consensus 249 SE-PMG~mL~NERML-EsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 249 SE-PMGYMLVNERML-ESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred ec-cchhhhhhHHHH-HHHHHHHhhcCCCCcccCcc
Confidence 74 344543344333 33344569999999987665
No 199
>PRK00536 speE spermidine synthase; Provisional
Probab=97.78 E-value=0.00011 Score=76.00 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=72.9
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC-CCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED-KALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~-~~~sFDvV 370 (597)
.+.+||=||.|.|+.++.+++.. .+|+.|||++.+|+.+++.++....... .+...... .+.. ..++||+|
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~-DpRv~l~~------~~~~~~~~~fDVI 143 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKN-NKNFTHAK------QLLDLDIKKYDLI 143 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhc-CCCEEEee------hhhhccCCcCCEE
Confidence 46899999999999999999886 4999999999999999997766433211 11111111 1111 12579999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
++-... ...+++.+++.|+|||.++...-++
T Consensus 144 IvDs~~---------~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 144 ICLQEP---------DIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred EEcCCC---------ChHHHHHHHHhcCCCcEEEECCCCc
Confidence 976321 1478899999999999999855333
No 200
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.77 E-value=0.00019 Score=74.36 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=39.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE 336 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~ 336 (597)
++.+|||||||+|.++..++..+. +|+|+|+++.|++.+++++.
T Consensus 42 ~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~ 85 (272)
T PRK00274 42 PGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFA 85 (272)
T ss_pred CcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhc
Confidence 567999999999999999988875 99999999999999988764
No 201
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.76 E-value=0.00049 Score=67.65 Aligned_cols=97 Identities=23% Similarity=0.244 Sum_probs=69.9
Q ss_pred EEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEc
Q psy17742 295 KVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQ 373 (597)
Q Consensus 295 rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~ 373 (597)
+|||||+|.|.....++-.. ..+++.+|....-+...+.-....+..+.. .+.....+ .....+||+|++.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~------v~~~R~E~--~~~~~~fd~v~aR 122 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVE------VINGRAEE--PEYRESFDVVTAR 122 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEE------EEES-HHH--TTTTT-EEEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEE------EEEeeecc--cccCCCccEEEee
Confidence 89999999998777765432 358999999999888888877777766432 33333333 2234679999998
Q ss_pred cchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 374 FCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 374 ~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
.+- .+..++.-+..+|++||.+++--
T Consensus 123 Av~--------~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 123 AVA--------PLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp SSS--------SHHHHHHHHGGGEEEEEEEEEEE
T ss_pred hhc--------CHHHHHHHHHHhcCCCCEEEEEc
Confidence 543 44578899999999999988764
No 202
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.73 E-value=0.00021 Score=69.73 Aligned_cols=112 Identities=13% Similarity=0.100 Sum_probs=68.6
Q ss_pred CCCEEEEECCCCChhHHHHHhc--CCC--------EEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING--GVK--------HVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE 361 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~--g~~--------~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~ 361 (597)
++..|||--||+|.++...+.. ... +++|.|+++.+++.|+++....+..... .+...| ...++
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i-----~~~~~D-~~~l~ 101 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI-----DFIQWD-ARELP 101 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE-----EEEE---GGGGG
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce-----EEEecc-hhhcc
Confidence 5689999999999999875433 222 3889999999999999998876654332 122223 22333
Q ss_pred CCCCceeEEEEccchhhhccCH----HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 362 DKALELDLVSCQFCIHYSFESV----QQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 362 ~~~~sFDvVi~~~vLh~lFes~----~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
...+++|+|++.--...-.... .-...+++.+.++|++ ..++++..+.
T Consensus 102 ~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~ 153 (179)
T PF01170_consen 102 LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNR 153 (179)
T ss_dssp GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCC
T ss_pred cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCH
Confidence 3346799999975443321221 2245678888899999 4444444433
No 203
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.73 E-value=0.00041 Score=66.86 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=81.0
Q ss_pred CCCCEEEEECCCCChhHHHHHhcCC--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh--hhccCCCCCCc
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWINGGV--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE--LRSQYEDKALE 366 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~g~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d--l~e~l~~~~~s 366 (597)
..+.-||++|.|+|-++..++..|. ..++.++.|++.+....+++.....-+ ++.|..+ +. ... ...
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~------gda~~l~~~l~-e~~--gq~ 117 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIIN------GDAFDLRTTLG-EHK--GQF 117 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccc------cchhhHHHHHh-hcC--CCe
Confidence 3678999999999999999998874 579999999999999999887654321 2344433 21 122 235
Q ss_pred eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
||.|+|.--+-.+ ......++|+.+...|.+||.|+-.+..
T Consensus 118 ~D~viS~lPll~~--P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 118 FDSVISGLPLLNF--PMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeeEEeccccccC--cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 9999997655443 3356678999999999999999877655
No 204
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.73 E-value=0.00021 Score=76.96 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=40.7
Q ss_pred CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh
Q psy17742 294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK 341 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~ 341 (597)
.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|+++....+..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~ 245 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNID 245 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 469999999999999777654 69999999999999999988776543
No 205
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.72 E-value=0.00013 Score=76.60 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=70.1
Q ss_pred CCCEEEEECCCCChhHHHHHh--------cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh-hhccCCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWIN--------GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE-LRSQYED 362 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~--------~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d-l~e~l~~ 362 (597)
++.+|||-+||+|.++..+.. .....++|+|+++.++..|+-++.-.+...... .....+ +......
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~----~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNI----NIIQGDSLENDKFI 121 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGC----EEEES-TTTSHSCT
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccc----cccccccccccccc
Confidence 567899999999999887654 234589999999999999987654333322110 022222 2222222
Q ss_pred CCCceeEEEEccchhhh------------c-----cCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 363 KALELDLVSCQFCIHYS------------F-----ESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 363 ~~~sFDvVi~~~vLh~l------------F-----es~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
...+||+|+++-.+... | .....-..++..+.+.|++||++.+.+|+.
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 23579999997432221 0 011122358899999999999999988865
No 206
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.00033 Score=68.81 Aligned_cols=112 Identities=22% Similarity=0.228 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCC--CceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKA--LELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~--~sFDv 369 (597)
.+.++||+-+|+|.+....+..|...++.||.+...+...+++....+...... .+..+....+.... ++||+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~-----~~~~da~~~L~~~~~~~~FDl 117 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEAR-----VLRNDALRALKQLGTREPFDL 117 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceE-----EEeecHHHHHHhcCCCCcccE
Confidence 578999999999999999999999999999999999999999988777443332 44443222222111 24999
Q ss_pred EEEccchhhhccCHHHHHHHHHH--HHHhccCCcEEEEEeCChh
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKN--AAECLKPGGFFVGTVPDSN 411 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~--i~rlLKPGG~fIit~pn~~ 411 (597)
|+.---++.- .-+....+.. -..+|+|||.+++......
T Consensus 118 VflDPPy~~~---l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~~ 158 (187)
T COG0742 118 VFLDPPYAKG---LLDKELALLLLEENGWLKPGALIVVEHDKDV 158 (187)
T ss_pred EEeCCCCccc---hhhHHHHHHHHHhcCCcCCCcEEEEEeCCCc
Confidence 9986555421 1122233333 4577999999999876553
No 207
>KOG3420|consensus
Probab=97.71 E-value=4.8e-05 Score=71.55 Aligned_cols=77 Identities=16% Similarity=0.095 Sum_probs=59.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
.+++++|||||.|-+.....-.+...|+|+||.+++++.+.++..+..... ++++++.....+. .+.||.++
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqi-------dlLqcdildle~~-~g~fDtav 119 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQI-------DLLQCDILDLELK-GGIFDTAV 119 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhh-------heeeeeccchhcc-CCeEeeEE
Confidence 578899999999999977776777889999999999999999887765543 2566654333322 37899998
Q ss_pred Eccch
Q psy17742 372 CQFCI 376 (597)
Q Consensus 372 ~~~vL 376 (597)
.+--+
T Consensus 120 iNppF 124 (185)
T KOG3420|consen 120 INPPF 124 (185)
T ss_pred ecCCC
Confidence 87443
No 208
>KOG2352|consensus
Probab=97.70 E-value=0.00019 Score=79.01 Aligned_cols=107 Identities=19% Similarity=0.244 Sum_probs=81.4
Q ss_pred CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEc
Q psy17742 294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQ 373 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~ 373 (597)
.++|-+|||.-.+...+.+.|+..++.+|+|+..|+....+........ .+.......+.+++++||+|+.-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~--------~~~~~d~~~l~fedESFdiVIdk 121 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEM--------QMVEMDMDQLVFEDESFDIVIDK 121 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcce--------EEEEecchhccCCCcceeEEEec
Confidence 3899999999999999999999999999999999999888764211111 22222222333444679999999
Q ss_pred cchhhhccCHHHH------HHHHHHHHHhccCCcEEEEEeC
Q psy17742 374 FCIHYSFESVQQA------RCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 374 ~vLh~lFes~~d~------~~~L~~i~rlLKPGG~fIit~p 408 (597)
..++++|+.+... ...+.+++++|+|||+++..+.
T Consensus 122 GtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 122 GTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 9999998766543 4789999999999999766544
No 209
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=97.70 E-value=0.0001 Score=77.45 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=55.1
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+|||||||+|.++..++..+ .+|+|+|+++.|++.+++++...+...... +...|... ... ..||+|+
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~-----ii~~Dal~-~~~--~~~d~Vv 106 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLE-----VIEGDALK-TEF--PYFDVCV 106 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEE-----EEECCHhh-hcc--cccCEEE
Confidence 57899999999999999988776 589999999999999999876543221111 33444222 122 2589999
Q ss_pred Eccchh
Q psy17742 372 CQFCIH 377 (597)
Q Consensus 372 ~~~vLh 377 (597)
++...+
T Consensus 107 aNlPY~ 112 (294)
T PTZ00338 107 ANVPYQ 112 (294)
T ss_pred ecCCcc
Confidence 875553
No 210
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.62 E-value=0.00022 Score=76.99 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=40.6
Q ss_pred CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh
Q psy17742 294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK 341 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~ 341 (597)
.+|||++||+|.++..+++. ..+|+|+|+++.+++.|+++....+..
T Consensus 208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~ 254 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID 254 (362)
T ss_pred CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 57999999999999977765 469999999999999999988776543
No 211
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.62 E-value=0.00069 Score=70.49 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=72.3
Q ss_pred CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh-hhccCCCCCCcee
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE-LRSQYEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d-l~e~l~~~~~sFD 368 (597)
.+.+|||+|||.|.-+..+... ...+++++|.|+.|++.++............ ..... ..+..+. ...|
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~------~~~~~~~~~~~~~--~~~D 104 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNA------EWRRVLYRDFLPF--PPDD 104 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccc------hhhhhhhcccccC--CCCc
Confidence 4679999999999755443321 4568999999999999998876544321110 01111 1111222 2359
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN 411 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~ 411 (597)
+|++.++|.-+ .+ .....+++++.+.+.+ +||+.-+...
T Consensus 105 Lvi~s~~L~EL-~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~ 143 (274)
T PF09243_consen 105 LVIASYVLNEL-PS-AARAELVRSLWNKTAP--VLVLVEPGTP 143 (274)
T ss_pred EEEEehhhhcC-Cc-hHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence 99999999988 34 6778888888888776 7777766653
No 212
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.52 E-value=0.00017 Score=75.77 Aligned_cols=59 Identities=19% Similarity=0.172 Sum_probs=47.6
Q ss_pred HHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHh
Q psy17742 275 MLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEE 337 (597)
Q Consensus 275 ~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~ 337 (597)
+|+.+.+..+... ++..+||++||.|+++..+++.. ...|+|+|.++.+++.|++++..
T Consensus 6 Vll~Evl~~L~~~----pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 6 VLLDEVVDALAIK----PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred ccHHHHHHhhCCC----CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 4566666655332 56799999999999999988764 35899999999999999988754
No 213
>KOG2798|consensus
Probab=97.46 E-value=0.0042 Score=65.27 Aligned_cols=204 Identities=18% Similarity=0.214 Sum_probs=115.9
Q ss_pred HhhhhhhHHHHHHHhccccccchhhccchhhhhhhhhhHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHh
Q psy17742 233 NQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWIN 312 (597)
Q Consensus 233 ~~~~~~~~~Va~hYn~~~~~~~~~R~~S~i~~LR~fnnwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~ 312 (597)
..|..+.+..+..+......+..+|.. ..+-+|..+..............+||==|||.|+++..++.
T Consensus 103 ~~m~kv~s~l~~i~RdwssE~~~ERd~------------~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~ 170 (369)
T KOG2798|consen 103 DFMSKVSSTLKQICRDWSSEGQRERDQ------------LYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLAC 170 (369)
T ss_pred HHHHHHHHHHHHHHHHhhhccchhhhh------------hhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHH
Confidence 344556666666666554444444331 22235555555544444444568899999999999999999
Q ss_pred cCCCEEEEEeCChHHHHHHHHHHHhhhhhcc-------------------cccc-cc-----------cee--e-hhhhc
Q psy17742 313 GGVKHVVFADIASVSIEDCKTRYEELKRKEE-------------------ARPY-RR-----------NVF--S-AELRS 358 (597)
Q Consensus 313 ~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~-------------------~~~~-~~-----------d~F--~-~dl~e 358 (597)
.|+ .+-|-++|--|+-...=-+..-...+. ..++ +. .-| . .|..+
T Consensus 171 ~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~e 249 (369)
T KOG2798|consen 171 LGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLE 249 (369)
T ss_pred hcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeE
Confidence 886 677888888876432221110000000 0000 00 011 1 01111
Q ss_pred cCC--CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecC
Q psy17742 359 QYE--DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLF 436 (597)
Q Consensus 359 ~l~--~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~ 436 (597)
-.+ ...+.||+|+..|.+ .+..+....|..|.++|||||+++=. |--+| .|.+
T Consensus 250 vy~~s~~~~~~d~VvTcfFI----DTa~NileYi~tI~~iLk~GGvWiNl-------------------GPLlY--HF~d 304 (369)
T KOG2798|consen 250 VYGTSSGAGSYDVVVTCFFI----DTAHNILEYIDTIYKILKPGGVWINL-------------------GPLLY--HFED 304 (369)
T ss_pred EecCcCCCCccceEEEEEEe----echHHHHHHHHHHHHhccCCcEEEec-------------------cceee--eccC
Confidence 111 123469999877666 34488899999999999999998652 22222 1222
Q ss_pred CCCCCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHH
Q psy17742 437 DTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFY 490 (597)
Q Consensus 437 ~~~d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~ 490 (597)
+ .|..- +..| =.+.+.|..+++..||+++.......-|
T Consensus 305 ~-------~g~~~----~~si-----Els~edl~~v~~~~GF~~~ke~~Idt~Y 342 (369)
T KOG2798|consen 305 T-------HGVEN----EMSI-----ELSLEDLKRVASHRGFEVEKERGIDTTY 342 (369)
T ss_pred C-------CCCcc----cccc-----cccHHHHHHHHHhcCcEEEEeeeeeccc
Confidence 1 11100 0111 2578899999999999999877554444
No 214
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.42 E-value=0.00097 Score=66.66 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=58.9
Q ss_pred CCCCEEEEECCCCChhHHHHH-hcCCCEEEEEeCChHHHHHHHHHHHhhhhhc--------cccccccceeehhhhccCC
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWI-NGGVKHVVFADIASVSIEDCKTRYEELKRKE--------EARPYRRNVFSAELRSQYE 361 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la-~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~--------~~~~~~~d~F~~dl~e~l~ 361 (597)
+++...+|||||.|......+ ..+..+.+||++.+...+.|........... ......++++..+....+
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~- 119 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDI- 119 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHH-
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhh-
Confidence 367899999999999877643 4567779999999999888876443322110 000111222222211111
Q ss_pred CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742 362 DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG 405 (597)
Q Consensus 362 ~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi 405 (597)
. ...|+|+++... |. +++...|..+...||+|-++|-
T Consensus 120 ~--s~AdvVf~Nn~~---F~--~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 120 W--SDADVVFVNNTC---FD--PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp G--HC-SEEEE--TT---T---HHHHHHHHHHHTTS-TT-EEEE
T ss_pred h--cCCCEEEEeccc---cC--HHHHHHHHHHHhcCCCCCEEEE
Confidence 1 137999998764 43 5666777888889999887764
No 215
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.39 E-value=0.00062 Score=76.90 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=38.0
Q ss_pred CCEEEEECCCCChhHHHHHhcC---------CCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGG---------VKHVVFADIASVSIEDCKTRYEELK 339 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g---------~~~V~GIDiS~~mIe~A~er~~~~~ 339 (597)
..+|||.|||+|.++..++... ...++|+|+++.++..|+.++....
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~ 87 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA 87 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC
Confidence 4689999999999998765421 1478999999999999998876554
No 216
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.36 E-value=0.00042 Score=66.85 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=48.3
Q ss_pred EEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEc
Q psy17742 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQ 373 (597)
Q Consensus 295 rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~ 373 (597)
.|||+.||.|+.++.+++.. .+|++||+++..++.|+.++.-.+...+...+.+|++.. ...+.... .||+|++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~--~~~~~~~~-~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL--LKRLKSNK-IFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH--GGGB-------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH--Hhhccccc-cccEEEEC
Confidence 59999999999999999886 599999999999999999988887655443222222221 22222211 28999874
No 217
>KOG1661|consensus
Probab=97.34 E-value=0.00052 Score=68.34 Aligned_cols=106 Identities=18% Similarity=0.161 Sum_probs=69.5
Q ss_pred CCCEEEEECCCCChhHHHHHh---cCCCEEEEEeCChHHHHHHHHHHHhhhhhccc--cc-ccccee-ehhhhccCCCCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWIN---GGVKHVVFADIASVSIEDCKTRYEELKRKEEA--RP-YRRNVF-SAELRSQYEDKA 364 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~---~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~--~~-~~~d~F-~~dl~e~l~~~~ 364 (597)
++.+.||+|+|+|.++..++. ......+|||.-++.|+.+++++...-..... .. .....| ..|-...++. .
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e-~ 160 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE-Q 160 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc-c
Confidence 689999999999999877653 12234599999999999999987664321000 00 000122 2233333443 3
Q ss_pred CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
.+||.|.|..+- ....+++...|+|||.+++-..
T Consensus 161 a~YDaIhvGAaa----------~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 161 APYDAIHVGAAA----------SELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred CCcceEEEccCc----------cccHHHHHHhhccCCeEEEeec
Confidence 579999997433 3456777788999999988653
No 218
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.23 E-value=0.0021 Score=75.19 Aligned_cols=117 Identities=11% Similarity=-0.055 Sum_probs=76.5
Q ss_pred CCCEEEEECCCCChhHHHHHhc-------------------------------------------CCCEEEEEeCChHHH
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-------------------------------------------GVKHVVFADIASVSI 328 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-------------------------------------------g~~~V~GIDiS~~mI 328 (597)
++..++|-+||+|.+++..+.. ...+++|+|+++.++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 4678999999999999875431 012699999999999
Q ss_pred HHHHHHHHhhhhhccccccccceeehhhhcc-CCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhcc---CCcEEE
Q psy17742 329 EDCKTRYEELKRKEEARPYRRNVFSAELRSQ-YEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLK---PGGFFV 404 (597)
Q Consensus 329 e~A~er~~~~~~~~~~~~~~~d~F~~dl~e~-l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLK---PGG~fI 404 (597)
+.|+.+....+...... +...|.... .+...++||+|+++--...-.....+...+.+.+.+.|| +|+.++
T Consensus 270 ~~A~~N~~~~g~~~~i~-----~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 270 QAARKNARRAGVAELIT-----FEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred HHHHHHHHHcCCCcceE-----EEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 99999988876653321 333332221 122224699999985543222333455556555555554 899998
Q ss_pred EEeCChhHH
Q psy17742 405 GTVPDSNQI 413 (597)
Q Consensus 405 it~pn~~~i 413 (597)
+.+.+....
T Consensus 345 llt~~~~l~ 353 (702)
T PRK11783 345 LFSSSPELL 353 (702)
T ss_pred EEeCCHHHH
Confidence 888876533
No 219
>KOG0820|consensus
Probab=97.23 E-value=0.00083 Score=69.22 Aligned_cols=74 Identities=22% Similarity=0.379 Sum_probs=56.4
Q ss_pred CCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh-hhccCCCCCCcee
Q psy17742 290 LGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE-LRSQYEDKALELD 368 (597)
Q Consensus 290 ~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d-l~e~l~~~~~sFD 368 (597)
.+++..||++|.|||.++.+++..+ ++|+++++++.|+....+|.+......... ++..| +..++| .||
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gtp~~~kLq-----V~~gD~lK~d~P----~fd 125 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGTPKSGKLQ-----VLHGDFLKTDLP----RFD 125 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHHHHHHHHhcCCCccceee-----EEecccccCCCc----ccc
Confidence 3478999999999999999999998 599999999999999999987765433322 33333 112232 399
Q ss_pred EEEEc
Q psy17742 369 LVSCQ 373 (597)
Q Consensus 369 vVi~~ 373 (597)
+++++
T Consensus 126 ~cVsN 130 (315)
T KOG0820|consen 126 GCVSN 130 (315)
T ss_pred eeecc
Confidence 99985
No 220
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.0018 Score=71.60 Aligned_cols=129 Identities=18% Similarity=0.124 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccccc
Q psy17742 270 NWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRR 349 (597)
Q Consensus 270 nwvKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~ 349 (597)
.-+...|+......+... ++.+|||+=||.|.++..+++.. .+|+|+|+++.+|+.|++++..++..+ .
T Consensus 275 ~~~~ekl~~~a~~~~~~~----~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N-~----- 343 (432)
T COG2265 275 PAVAEKLYETALEWLELA----GGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDN-V----- 343 (432)
T ss_pred HHHHHHHHHHHHHHHhhc----CCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCc-E-----
Confidence 334444555544443322 56789999999999999998554 699999999999999999998887775 3
Q ss_pred ceeehhhhccCCC---CCCceeEEEEccchhhhccCHHHHH-HHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742 350 NVFSAELRSQYED---KALELDLVSCQFCIHYSFESVQQAR-CMLKNAAECLKPGGFFVGTVPDSNQIMARYRR 419 (597)
Q Consensus 350 d~F~~dl~e~l~~---~~~sFDvVi~~~vLh~lFes~~d~~-~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~ 419 (597)
.|..+..+.+.. ....+|+|+.--- ..-.. .+++.+.+ ++|-.++++++ |+..+...+..
T Consensus 344 -~f~~~~ae~~~~~~~~~~~~d~VvvDPP-------R~G~~~~~lk~l~~-~~p~~IvYVSC-NP~TlaRDl~~ 407 (432)
T COG2265 344 -EFIAGDAEEFTPAWWEGYKPDVVVVDPP-------RAGADREVLKQLAK-LKPKRIVYVSC-NPATLARDLAI 407 (432)
T ss_pred -EEEeCCHHHHhhhccccCCCCEEEECCC-------CCCCCHHHHHHHHh-cCCCcEEEEeC-CHHHHHHHHHH
Confidence 454432222211 1236899987421 11122 45555544 46666666654 66566555543
No 221
>KOG1663|consensus
Probab=97.12 E-value=0.0068 Score=61.30 Aligned_cols=106 Identities=14% Similarity=0.066 Sum_probs=72.1
Q ss_pred CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh--hhhccCCCCCCce
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA--ELRSQYEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~--dl~e~l~~~~~sF 367 (597)
.++++||||.=+|.-+..++.. .-.+|+++|+++...+.+.......+......++.+..... .+.... ..+.|
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~--~~~tf 150 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADG--ESGTF 150 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcC--CCCce
Confidence 4688999999999888776643 13589999999999999977766665554432111111111 022222 24679
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+++.-. ........+..+.++||+||++++.
T Consensus 151 DfaFvDa-------dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 151 DFAFVDA-------DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred eEEEEcc-------chHHHHHHHHHHHhhcccccEEEEe
Confidence 9997631 2245558899999999999999985
No 222
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0049 Score=66.52 Aligned_cols=115 Identities=18% Similarity=0.195 Sum_probs=77.1
Q ss_pred CCCCCEEEEECCCCChhHHHHHhcC---CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh--ccCCCCC
Q psy17742 290 LGSPIKVLDMGSGKGGDMLKWINGG---VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR--SQYEDKA 364 (597)
Q Consensus 290 ~~~~~rVLDLGCGtG~~l~~la~~g---~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~--e~l~~~~ 364 (597)
+.++.+|||++++.|+=+..++... ...|+++|+++.-+...+++....+..+.. ....+.. .......
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~------~~~~d~~~~~~~~~~~ 227 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVI------VVNKDARRLAELLPGG 227 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceE------EEeccccccccccccc
Confidence 3478999999999999777766543 235799999999999999999888776522 3333211 1111222
Q ss_pred CceeEEEEc------cchhhhc-----cCH-------HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 365 LELDLVSCQ------FCIHYSF-----ESV-------QQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 365 ~sFDvVi~~------~vLh~lF-----es~-------~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
++||.|++- ++++--. -+. .-..++|..+.++|||||.|+-+|.+-
T Consensus 228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 359999862 2221110 011 124678999999999999999987654
No 223
>KOG3987|consensus
Probab=97.10 E-value=0.00011 Score=72.81 Aligned_cols=97 Identities=19% Similarity=0.313 Sum_probs=71.5
Q ss_pred CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC 372 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~ 372 (597)
+.++||||+|.|..+..++.. +.+|++.++|..|+...+++.-. .+.. . .+...+-+||+|+|
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~yn-------------Vl~~--~-ew~~t~~k~dli~c 175 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKNYN-------------VLTE--I-EWLQTDVKLDLILC 175 (288)
T ss_pred CeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcCCc-------------eeee--h-hhhhcCceeehHHH
Confidence 579999999999999877644 35799999999998877764110 1111 1 12222346999999
Q ss_pred ccchhhhccCHHHHHHHHHHHHHhccC-CcEEEEEeCCh
Q psy17742 373 QFCIHYSFESVQQARCMLKNAAECLKP-GGFFVGTVPDS 410 (597)
Q Consensus 373 ~~vLh~lFes~~d~~~~L~~i~rlLKP-GG~fIit~pn~ 410 (597)
...|.-. .++-++|+.+..+|+| .|.+|+...-+
T Consensus 176 lNlLDRc----~~p~kLL~Di~~vl~psngrvivaLVLP 210 (288)
T KOG3987|consen 176 LNLLDRC----FDPFKLLEDIHLVLAPSNGRVIVALVLP 210 (288)
T ss_pred HHHHHhh----cChHHHHHHHHHHhccCCCcEEEEEEec
Confidence 9888666 5677999999999999 89888875433
No 224
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.08 E-value=0.0023 Score=68.54 Aligned_cols=105 Identities=22% Similarity=0.103 Sum_probs=79.8
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
.|.+|||+-+|-|.++..++..|...|+++|++|.+++.+++++.-++...... .+..|..+..+. .+.||-|+
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~-----~i~gD~rev~~~-~~~aDrIi 261 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVE-----PILGDAREVAPE-LGVADRII 261 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceee-----EEeccHHHhhhc-cccCCEEE
Confidence 578999999999999999999986669999999999999999998887765432 444443332222 15699999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+... .....++..+.++|++||++..-....
T Consensus 262 m~~p--------~~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 262 MGLP--------KSAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred eCCC--------CcchhhHHHHHHHhhcCcEEEEEeccc
Confidence 8743 234567888888999999987654433
No 225
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.002 Score=64.33 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=68.5
Q ss_pred CCCEEEEECCCCChhHHHHHhcCC--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh----hhccCCCCCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGV--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----LRSQYEDKAL 365 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d----l~e~l~~~~~ 365 (597)
++..|+|||+-.|+|++.+++... ..|+|+|+.|--. ... ...+.+++...+ +.+.+.. .
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---------~~~---V~~iq~d~~~~~~~~~l~~~l~~--~ 110 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------IPG---VIFLQGDITDEDTLEKLLEALGG--A 110 (205)
T ss_pred CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc---------CCC---ceEEeeeccCccHHHHHHHHcCC--C
Confidence 679999999999999998776532 2499999976421 000 111112233222 3333433 3
Q ss_pred ceeEEEEccc--------hhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh---hHHHHHHh
Q psy17742 366 ELDLVSCQFC--------IHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS---NQIMARYR 418 (597)
Q Consensus 366 sFDvVi~~~v--------Lh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~---~~i~~~l~ 418 (597)
.+|+|++-.+ .+|. -...-...++.-+..+|+|||.|++-+... +.+++.++
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~-r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~ 173 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHA-RSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALR 173 (205)
T ss_pred CcceEEecCCCCcCCCccccHH-HHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHH
Confidence 4799997432 2332 122334566777788999999999887666 44444444
No 226
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.97 E-value=0.0051 Score=64.39 Aligned_cols=114 Identities=25% Similarity=0.236 Sum_probs=75.9
Q ss_pred CCCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC-CCCce
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED-KALEL 367 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~-~~~sF 367 (597)
.++.+|||+++|.|+=+..++..- -..+++.|+++.-+...+.+....+..+.. .+..|.....+. ....|
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~------~~~~D~~~~~~~~~~~~f 157 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVI------VINADARKLDPKKPESKF 157 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEE------EEESHHHHHHHHHHTTTE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEE------EEeecccccccccccccc
Confidence 367899999999999777766532 358999999999999999998887765432 333332222111 11259
Q ss_pred eEEEEc------cchhhh------cc--C----HHHHHHHHHHHHHhc----cCCcEEEEEeCCh
Q psy17742 368 DLVSCQ------FCIHYS------FE--S----VQQARCMLKNAAECL----KPGGFFVGTVPDS 410 (597)
Q Consensus 368 DvVi~~------~vLh~l------Fe--s----~~d~~~~L~~i~rlL----KPGG~fIit~pn~ 410 (597)
|.|++- +++..- .. . ..-..++|+++.+.| ||||+++-+|-.-
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 999872 112111 00 0 012367899999999 9999999988544
No 227
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.94 E-value=0.0055 Score=66.06 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhc
Q psy17742 272 TKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE 342 (597)
Q Consensus 272 vKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~ 342 (597)
+...|+......+... + .+|||+-||.|.++..++... .+|+|||+++.+|+.|++++..++..+
T Consensus 181 ~~~~l~~~~~~~l~~~----~-~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n 245 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLS----K-GDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDN 245 (352)
T ss_dssp HHHHHHHHHHHHCTT-----T-TEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--S
T ss_pred HHHHHHHHHHHHhhcC----C-CcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCc
Confidence 4444666555544322 2 379999999999999998765 699999999999999999988877654
No 228
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.94 E-value=0.0084 Score=55.97 Aligned_cols=48 Identities=27% Similarity=0.270 Sum_probs=41.8
Q ss_pred CCCEEEEECCCCChhHHHHHh-----cCCCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742 292 SPIKVLDMGSGKGGDMLKWIN-----GGVKHVVFADIASVSIEDCKTRYEELK 339 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~-----~g~~~V~GIDiS~~mIe~A~er~~~~~ 339 (597)
+...|+|+|||.|.++..++. ....+|+|||.++..++.|.++.....
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 578999999999999998877 444599999999999999999877665
No 229
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.87 E-value=0.0061 Score=61.37 Aligned_cols=96 Identities=20% Similarity=0.245 Sum_probs=67.6
Q ss_pred CCEEEEECCCCChhHHHHH--hcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCc-eeE
Q psy17742 293 PIKVLDMGSGKGGDMLKWI--NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALE-LDL 369 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la--~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~s-FDv 369 (597)
+.+|+|||+|.|.....++ ... .+|+-+|....-+...+.-..+.+..+.. ++.. -.+.+... .. ||+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~-~~vtLles~~Kk~~FL~~~~~eL~L~nv~------i~~~-RaE~~~~~-~~~~D~ 138 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPD-LKVTLLESLGKKIAFLREVKKELGLENVE------IVHG-RAEEFGQE-KKQYDV 138 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccC-CcEEEEccCchHHHHHHHHHHHhCCCCeE------Eehh-hHhhcccc-cccCcE
Confidence 5899999999999887755 233 36999999998888887777776665432 2222 22333321 13 999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG 405 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi 405 (597)
|++..+ ..+..++.-+..+||+||.++.
T Consensus 139 vtsRAv--------a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 139 VTSRAV--------ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred EEeehc--------cchHHHHHHHHHhcccCCcchh
Confidence 999854 3455678888899999998764
No 230
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.80 E-value=0.018 Score=62.50 Aligned_cols=123 Identities=15% Similarity=0.025 Sum_probs=81.9
Q ss_pred CCCEEEEECCCCChhHHHHHhcCC--C--------------------------------------EEEEEeCChHHHHHH
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGV--K--------------------------------------HVVFADIASVSIEDC 331 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~--~--------------------------------------~V~GIDiS~~mIe~A 331 (597)
++..++|-=||+|.+++..+-.+. + .++|+|+++.+|+.|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 346899999999999988654331 1 378999999999999
Q ss_pred HHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHH----HHHHHHHHHHhccCCcEEEEEe
Q psy17742 332 KTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQ----ARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 332 ~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d----~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+.++...+..... .|.......+..+.+.+|+|+|+--..-=+.+... ...+.+.+++.++-.+.+++++
T Consensus 271 k~NA~~AGv~d~I------~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 271 KANARAAGVGDLI------EFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHhcCCCceE------EEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 9999988776543 34433233343332469999998543221223322 3455666677788888888888
Q ss_pred CChhHHHHHHhhh
Q psy17742 408 PDSNQIMARYRRH 420 (597)
Q Consensus 408 pn~~~i~~~l~~~ 420 (597)
.........++..
T Consensus 345 ~e~~~~~~~~ra~ 357 (381)
T COG0116 345 SEDLLFCLGLRAD 357 (381)
T ss_pred cHHHHHHHhhhhc
Confidence 7665555555543
No 231
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.77 E-value=0.015 Score=58.74 Aligned_cols=103 Identities=21% Similarity=0.223 Sum_probs=65.3
Q ss_pred CCCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh--ccCCCCCCc
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR--SQYEDKALE 366 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~--e~l~~~~~s 366 (597)
+++.+||-||.++|....++++- + -..|++++.|+.+....-.-.....+.. -+..|.. ..+..--+.
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIi--------PIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNII--------PILEDARHPEKYRMLVEM 143 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEE--------EEES-TTSGGGGTTTS--
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCcee--------eeeccCCChHHhhccccc
Confidence 47899999999999988887653 2 2489999999976554443333222211 1111111 111111246
Q ss_pred eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
.|+|++--+ ..++.+-++.|+...||+||.|++.+
T Consensus 144 VDvI~~DVa------Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 144 VDVIFQDVA------QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEEE-S------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEecCC------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 999988522 23688889999999999999999976
No 232
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.66 E-value=0.0058 Score=60.46 Aligned_cols=104 Identities=18% Similarity=0.136 Sum_probs=70.3
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
.+++|||+|+|.|..++..++.|...|+..|+.+..+...+-+...++.... +...++ +. .+..||+|+
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~-------~~~~d~---~g-~~~~~Dl~L 147 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSIL-------FTHADL---IG-SPPAFDLLL 147 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeE-------Eeeccc---cC-CCcceeEEE
Confidence 5789999999999999999999988999999998877777666655553321 222221 22 345699999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+..++..- ....+++.-..++...|-.+++-.|..
T Consensus 148 agDlfy~~----~~a~~l~~~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 148 AGDLFYNH----TEADRLIPWKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred eeceecCc----hHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 98875221 455667774444444455555555554
No 233
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.0089 Score=60.82 Aligned_cols=100 Identities=23% Similarity=0.218 Sum_probs=66.1
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++..+||||+.||+++..+++.|+.+|+|+|..-..+..--+.-.......+. .++ .+. .+.+. +..|+|+
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~t--N~r-~l~---~~~~~---~~~d~~v 149 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERT--NVR-YLT---PEDFT---EKPDLIV 149 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecC--Chh-hCC---HHHcc---cCCCeEE
Confidence 67899999999999999999999999999999887654322211000000000 000 011 11121 2478888
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|--++ -....+|-.+..+|+|||.++.-+
T Consensus 150 ~DvSF-------ISL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 150 IDVSF-------ISLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred EEeeh-------hhHHHHHHHHHHhcCCCceEEEEe
Confidence 87555 356789999999999999887754
No 234
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.53 E-value=0.0099 Score=63.66 Aligned_cols=87 Identities=15% Similarity=0.242 Sum_probs=55.3
Q ss_pred CCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
.++.++|||||++|+++..+++.|. .|++||..+- + ......+. . ..+..+.....+. .+.+|+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l----~-~~L~~~~~---V-----~h~~~d~fr~~p~-~~~vDwv 274 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPM----A-QSLMDTGQ---V-----EHLRADGFKFRPP-RKNVDWL 274 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhc----C-HhhhCCCC---E-----EEEeccCcccCCC-CCCCCEE
Confidence 3689999999999999999999996 9999996541 1 11111111 1 0222221222221 3579999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCC
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPG 400 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPG 400 (597)
+|-.+. .+..+++-+.+.|..|
T Consensus 275 VcDmve--------~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 275 VCDMVE--------KPARVAELMAQWLVNG 296 (357)
T ss_pred EEeccc--------CHHHHHHHHHHHHhcC
Confidence 996543 4556777777777665
No 235
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.53 E-value=0.041 Score=55.10 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=71.5
Q ss_pred EEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEcc
Q psy17742 296 VLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQF 374 (597)
Q Consensus 296 VLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~ 374 (597)
|.||||-.|.+...+.+.|. .+++++|+++..++.|++.....+...+.. ....|-...++.. ...|+|+..+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~-----~rlgdGL~~l~~~-e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIE-----VRLGDGLEVLKPG-EDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEE-----EEE-SGGGG--GG-G---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEE-----EEECCcccccCCC-CCCCEEEEec
Confidence 68999999999999998884 579999999999999999998877654431 2233322334332 2278876654
Q ss_pred chhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh-hHHHHHHhh
Q psy17742 375 CIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS-NQIMARYRR 419 (597)
Q Consensus 375 vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~-~~i~~~l~~ 419 (597)
+= . .-...+|.+....++....||+.-.+. ..++..|..
T Consensus 75 MG-G-----~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~ 114 (205)
T PF04816_consen 75 MG-G-----ELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYE 114 (205)
T ss_dssp E--H-----HHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHH
T ss_pred CC-H-----HHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHH
Confidence 32 1 356778888888887777888877666 444444444
No 236
>KOG2915|consensus
Probab=96.38 E-value=0.022 Score=59.05 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=80.5
Q ss_pred CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
|+.+||+-|.|+|.++..+++. .-.+++-.|+-..-.+.|.+.+++.+.....+.+.+|+-. ..+...+..+|.
T Consensus 105 PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~----~GF~~ks~~aDa 180 (314)
T KOG2915|consen 105 PGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG----SGFLIKSLKADA 180 (314)
T ss_pred CCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc----CCccccccccce
Confidence 7899999999999999888764 2358999999999999999999888766554333333322 233333567898
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCc-EEEEEeCChhHHHHHHhh
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGG-FFVGTVPDSNQIMARYRR 419 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG-~fIit~pn~~~i~~~l~~ 419 (597)
|+.- .+.+..++-.++.+||.+| +|+...|.-+.+-.....
T Consensus 181 VFLD---------lPaPw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~ 222 (314)
T KOG2915|consen 181 VFLD---------LPAPWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEA 222 (314)
T ss_pred EEEc---------CCChhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHH
Confidence 8653 2455567777778898876 666666666666544443
No 237
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=96.36 E-value=0.01 Score=61.34 Aligned_cols=56 Identities=21% Similarity=0.297 Sum_probs=45.6
Q ss_pred HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742 276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE 336 (597)
Q Consensus 276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~ 336 (597)
++++.+..... .++..|||||+|.|.++..+++.+. .|+++++++.++...+++..
T Consensus 18 v~~kIv~~a~~----~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~ 73 (259)
T COG0030 18 VIDKIVEAANI----SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA 73 (259)
T ss_pred HHHHHHHhcCC----CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc
Confidence 45555553322 2478999999999999999999884 89999999999999998875
No 238
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.33 E-value=0.032 Score=59.82 Aligned_cols=115 Identities=20% Similarity=0.323 Sum_probs=63.5
Q ss_pred CCCEEEEECCCCChhHHHHHhc------------C-----CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING------------G-----VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~------------g-----~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~ 354 (597)
...+|+|+||..|..+..+... + --+|+.-|+-.+=-...-+.+......... ...+|..
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~---~~~~f~~ 92 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK---FRNYFVS 92 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH---TTSEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC---CceEEEE
Confidence 4679999999999977654321 1 027888887665443333322222100000 0124443
Q ss_pred h-----hhccCCCCCCceeEEEEccchhhhcc------C-----------------------------HHHHHHHHHHHH
Q psy17742 355 E-----LRSQYEDKALELDLVSCQFCIHYSFE------S-----------------------------VQQARCMLKNAA 394 (597)
Q Consensus 355 d-----l~e~l~~~~~sFDvVi~~~vLh~lFe------s-----------------------------~~d~~~~L~~i~ 394 (597)
. ...-+| .++.|++++.++|||+-. + ..|+..+|+.=+
T Consensus 93 gvpgSFy~rLfP--~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra 170 (334)
T PF03492_consen 93 GVPGSFYGRLFP--SNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARA 170 (334)
T ss_dssp EEES-TTS--S---TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCC--CCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 122334 367999999999999721 0 145677888888
Q ss_pred HhccCCcEEEEEeCChh
Q psy17742 395 ECLKPGGFFVGTVPDSN 411 (597)
Q Consensus 395 rlLKPGG~fIit~pn~~ 411 (597)
+-|+|||+++++++..+
T Consensus 171 ~ELv~GG~mvl~~~gr~ 187 (334)
T PF03492_consen 171 EELVPGGRMVLTFLGRD 187 (334)
T ss_dssp HHEEEEEEEEEEEEE-S
T ss_pred heeccCcEEEEEEeecc
Confidence 99999999999986553
No 239
>KOG1709|consensus
Probab=96.18 E-value=0.057 Score=54.36 Aligned_cols=104 Identities=15% Similarity=0.097 Sum_probs=71.4
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++.+||.+|-|-|....++.......-+-|+..+..++..+...-..... . ++-.-.-.|....++++ .||-|+
T Consensus 101 kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~n--V--iil~g~WeDvl~~L~d~--~FDGI~ 174 (271)
T KOG1709|consen 101 KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKEN--V--IILEGRWEDVLNTLPDK--HFDGIY 174 (271)
T ss_pred CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccc--e--EEEecchHhhhcccccc--CcceeE
Confidence 57999999999999988888887767788999999887776542211111 1 00000112244556664 599996
Q ss_pred Ec-cchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 372 CQ-FCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 372 ~~-~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
-- ++=+| ++...+.+.+.++|||+|+|-+.
T Consensus 175 yDTy~e~y-----Edl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 175 YDTYSELY-----EDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred eechhhHH-----HHHHHHHHHHhhhcCCCceEEEe
Confidence 53 32333 89999999999999999988553
No 240
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.16 E-value=0.038 Score=57.39 Aligned_cols=129 Identities=14% Similarity=0.211 Sum_probs=70.5
Q ss_pred HHHHHHhhcccCCCCCCCCEEEEECCCC--ChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccce
Q psy17742 276 LIDEFLTRCKSSQPLGSPIKVLDMGSGK--GGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNV 351 (597)
Q Consensus 276 LI~~~l~~l~~~~~~~~~~rVLDLGCGt--G~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~ 351 (597)
++.+..+.+.... .=...||||||- -......++. .-++|+-+|..+..+..++..+...... ....+..|.
T Consensus 55 Fl~RaVr~la~~~---GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g-~t~~v~aD~ 130 (267)
T PF04672_consen 55 FLRRAVRYLAEEA---GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRG-RTAYVQADL 130 (267)
T ss_dssp HHHHHHHHHHCTT------EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTS-EEEEEE--T
T ss_pred HHHHHHHHHHHhc---CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCc-cEEEEeCCC
Confidence 4444444443331 124699999994 3344444432 3469999999999999999887665431 111011122
Q ss_pred eehh-h------hccCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742 352 FSAE-L------RSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN 411 (597)
Q Consensus 352 F~~d-l------~e~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~ 411 (597)
...+ + ...+.. .. -=.|++..+|||+ .+.+++..+++.+...|.||.+|+++....+
T Consensus 131 r~p~~iL~~p~~~~~lD~-~r-PVavll~~vLh~v-~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 131 RDPEAILAHPEVRGLLDF-DR-PVAVLLVAVLHFV-PDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp T-HHHHHCSHHHHCC--T-TS---EEEECT-GGGS--CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCHHHHhcCHHHHhcCCC-CC-CeeeeeeeeeccC-CCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 2221 1 111211 11 2256677789997 6667899999999999999999999986654
No 241
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.13 E-value=0.01 Score=54.51 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=38.6
Q ss_pred EEEEECCCCChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhh
Q psy17742 295 KVLDMGSGKGGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELK 339 (597)
Q Consensus 295 rVLDLGCGtG~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~ 339 (597)
.|||+|||.|.++..++..+. .+++++|+++.+++.+++++...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~ 46 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNN 46 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcC
Confidence 389999999999998887664 379999999999999999876654
No 242
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.05 E-value=0.037 Score=59.42 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHH--HHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTR--YEELKRKEEARPYRRNVFSAELRSQYEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er--~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD 368 (597)
...+||=+|.|.|.-++.+.+.. +.+++-+|++|.||+.+++. .+..+......+ ....+..|..+.+......||
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dp-Rv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDP-RVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCC-eeEEEeccHHHHHHhhccccc
Confidence 34689999999999999998876 78999999999999999853 222221111000 011344443333433445799
Q ss_pred EEEEcc------chhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 369 LVSCQF------CIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 369 vVi~~~------vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+||.-+ ++.-+ --..+..-+++.|+++|.+++..-++
T Consensus 368 ~vIVDl~DP~tps~~rl-----YS~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 368 VVIVDLPDPSTPSIGRL-----YSVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred EEEEeCCCCCCcchhhh-----hhHHHHHHHHHhcCcCceEEEecCCC
Confidence 998742 22111 12468888999999999999875444
No 243
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.03 E-value=0.005 Score=54.07 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=37.3
Q ss_pred EEECCCCChhHHHHHhc----CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCceeE
Q psy17742 297 LDMGSGKGGDMLKWING----GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALELDL 369 (597)
Q Consensus 297 LDLGCGtG~~l~~la~~----g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sFDv 369 (597)
||||+..|..+..+++. +..+++++|..+. .+.+++..+..+...+.. ++..+ ....++ .++||+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~-----~~~g~s~~~l~~~~--~~~~dl 72 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVE-----FIQGDSPDFLPSLP--DGPIDL 72 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEE-----EEES-THHHHHHHH--H--EEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEE-----EEEcCcHHHHHHcC--CCCEEE
Confidence 68999999877766542 2237999999995 223333333222222221 23322 122232 256999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+.=. -|-- +.....++.+...|+|||++++.
T Consensus 73 i~iDg-~H~~----~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 73 IFIDG-DHSY----EAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp EEEES----H----HHHHHHHHHHGGGEEEEEEEEEE
T ss_pred EEECC-CCCH----HHHHHHHHHHHHHcCCCeEEEEe
Confidence 98754 2222 66778899999999999999874
No 244
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.95 E-value=0.039 Score=52.07 Aligned_cols=84 Identities=24% Similarity=0.253 Sum_probs=54.8
Q ss_pred EEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCceeEEEEccchhhhcc-------CHHHH
Q psy17742 317 HVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALELDLVSCQFCIHYSFE-------SVQQA 386 (597)
Q Consensus 317 ~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sFDvVi~~~vLh~lFe-------s~~d~ 386 (597)
+|+|+||-+.+|+.+++++.+.+...+.. ++..+ +.+.++. +++|+|+.+ |.|+.. ..+.-
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~-----li~~sHe~l~~~i~~--~~v~~~iFN--LGYLPggDk~i~T~~~TT 71 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVT-----LILDSHENLDEYIPE--GPVDAAIFN--LGYLPGGDKSITTKPETT 71 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEE-----EEES-GGGGGGT--S----EEEEEEE--ESB-CTS-TTSB--HHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEE-----EEECCHHHHHhhCcc--CCcCEEEEE--CCcCCCCCCCCCcCcHHH
Confidence 58999999999999999999886654331 33332 3333443 469998776 555532 23445
Q ss_pred HHHHHHHHHhccCCcEEEEEeCC
Q psy17742 387 RCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 387 ~~~L~~i~rlLKPGG~fIit~pn 409 (597)
..+|+.+.++|+|||.+++.+..
T Consensus 72 l~Al~~al~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 72 LKALEAALELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE--
T ss_pred HHHHHHHHHhhccCCEEEEEEeC
Confidence 78899999999999999988754
No 245
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.87 E-value=0.11 Score=53.66 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=40.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE 336 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~ 336 (597)
++..|||||+|.|.++..+++.+ .+++++|+++.+++..++++.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~ 73 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFA 73 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCT
T ss_pred CCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhh
Confidence 57899999999999999999888 799999999999999998766
No 246
>KOG3201|consensus
Probab=95.84 E-value=0.035 Score=53.59 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=68.4
Q ss_pred CCEEEEECCCCChhHHHHHh--cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhh-ccCCCCCCceeE
Q psy17742 293 PIKVLDMGSGKGGDMLKWIN--GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELR-SQYEDKALELDL 369 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~--~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~-e~l~~~~~sFDv 369 (597)
+.+||++|.|--+++--+.. .....|...|-++.+|+..++....+....... + -.+..... ........+||+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~ts--c-~vlrw~~~~aqsq~eq~tFDi 106 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTS--C-CVLRWLIWGAQSQQEQHTFDI 106 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccce--e-hhhHHHHhhhHHHHhhCcccE
Confidence 56799999986555444332 234689999999999988877544331111000 0 00000000 001111247999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
|+|..++-.- +....+.+.|..+|+|.|.-++..|..
T Consensus 107 IlaADClFfd----E~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 107 ILAADCLFFD----EHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred EEeccchhHH----HHHHHHHHHHHHHhCcccceeEecCcc
Confidence 9999987443 566788999999999999877765533
No 247
>KOG4589|consensus
Probab=95.74 E-value=0.036 Score=54.65 Aligned_cols=109 Identities=18% Similarity=0.150 Sum_probs=62.0
Q ss_pred CCCCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh----hhccCCCC
Q psy17742 290 LGSPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----LRSQYEDK 363 (597)
Q Consensus 290 ~~~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d----l~e~l~~~ 363 (597)
..++.+|||+||..|.++.-..+. ....|.|||+-.-. +..+..... ..++-+.. +.+.++.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------p~~Ga~~i~---~~dvtdp~~~~ki~e~lp~- 134 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------PPEGATIIQ---GNDVTDPETYRKIFEALPN- 134 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------CCCCccccc---ccccCCHHHHHHHHHhCCC-
Confidence 447899999999999999876553 24579999985421 111111000 00111111 3444544
Q ss_pred CCceeEEEEccchhhh----ccC---HHHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742 364 ALELDLVSCQFCIHYS----FES---VQQARCMLKNAAECLKPGGFFVGTVPDSN 411 (597)
Q Consensus 364 ~~sFDvVi~~~vLh~l----Fes---~~d~~~~L~~i~rlLKPGG~fIit~pn~~ 411 (597)
.+.|+|++-++-... ..| .+--..+|.-....++|+|.|++-+.+..
T Consensus 135 -r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~ 188 (232)
T KOG4589|consen 135 -RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS 188 (232)
T ss_pred -CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence 569999985431110 011 11123344445567899999999987773
No 248
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.65 E-value=0.04 Score=58.17 Aligned_cols=83 Identities=16% Similarity=0.083 Sum_probs=43.1
Q ss_pred CCEEEEECCCCChhHHHH-HhcCCCEEEEEeCChHHHHHHHHHHHhh-hhhccccccccceeehh---hhccCCCCCCce
Q psy17742 293 PIKVLDMGSGKGGDMLKW-INGGVKHVVFADIASVSIEDCKTRYEEL-KRKEEARPYRRNVFSAE---LRSQYEDKALEL 367 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~l-a~~g~~~V~GIDiS~~mIe~A~er~~~~-~~~~~~~~~~~d~F~~d---l~e~l~~~~~sF 367 (597)
..++||||||....-.-+ ++....+++|+||++.+++.|++....+ ....+.. .....+ +...+......|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~----l~~~~~~~~i~~~i~~~~e~~ 178 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIE----LRKQKNPDNIFDGIIQPNERF 178 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE----EEE--ST-SSTTTSTT--S-E
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceE----EEEcCCccccchhhhccccee
Confidence 578999999987543222 2222369999999999999999998877 4433221 011111 222333334579
Q ss_pred eEEEEccchhhh
Q psy17742 368 DLVSCQFCIHYS 379 (597)
Q Consensus 368 DvVi~~~vLh~l 379 (597)
|+.+|+--+|-.
T Consensus 179 dftmCNPPFy~s 190 (299)
T PF05971_consen 179 DFTMCNPPFYSS 190 (299)
T ss_dssp EEEEE-----SS
T ss_pred eEEecCCccccC
Confidence 999999888553
No 249
>KOG2730|consensus
Probab=95.62 E-value=0.0065 Score=61.11 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=58.6
Q ss_pred CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC 372 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~ 372 (597)
...|+|.-||.|+.+..++..+. .|++||+++.-|..|+.++.-.+...+..++.+|++.. ...+......+|+|..
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~--~~~lq~~K~~~~~vf~ 171 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL--ASKLKADKIKYDCVFL 171 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHH--HHHHhhhhheeeeeec
Confidence 45799999999999998887774 89999999999999999988888877765444554443 2223332234667766
Q ss_pred ccch
Q psy17742 373 QFCI 376 (597)
Q Consensus 373 ~~vL 376 (597)
+..-
T Consensus 172 sppw 175 (263)
T KOG2730|consen 172 SPPW 175 (263)
T ss_pred CCCC
Confidence 5433
No 250
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.50 E-value=0.0072 Score=57.77 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=47.6
Q ss_pred CCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742 363 KALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR 419 (597)
Q Consensus 363 ~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~ 419 (597)
.+++.|+|+|..++.|+ +......+++.+++.|||||+|-+.+|+...+.+.+..
T Consensus 44 ~dns~d~iyaeHvlEHl--t~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~ 98 (185)
T COG4627 44 EDNSVDAIYAEHVLEHL--TYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQH 98 (185)
T ss_pred CCcchHHHHHHHHHHHH--hHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhh
Confidence 34679999999999887 66788899999999999999999999999887776543
No 251
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.40 E-value=0.27 Score=51.49 Aligned_cols=110 Identities=18% Similarity=0.149 Sum_probs=57.2
Q ss_pred CCCEEEEECCCCChhHHH-HHhc-C-CCEEEEEeCChHHHHHHHHHHH-hhhhhccccccccceeehhhhccCCCCCCce
Q psy17742 292 SPIKVLDMGSGKGGDMLK-WING-G-VKHVVFADIASVSIEDCKTRYE-ELKRKEEARPYRRNVFSAELRSQYEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~-la~~-g-~~~V~GIDiS~~mIe~A~er~~-~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF 367 (597)
.+.+|+=||||.=-++.- +++. + ...|+++|+++.+++.+++-.. ..+...... +...+.. .....-..|
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~-----f~~~d~~-~~~~dl~~~ 193 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMS-----FITADVL-DVTYDLKEY 193 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEE-----EEES-GG-GG-GG----
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeE-----EEecchh-ccccccccC
Confidence 346999999997555444 3332 2 2479999999999999998766 333332221 2223321 111122459
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
|+|+...... .+.+...++|.++.+.++||+.++.-..+.
T Consensus 194 DvV~lAalVg---~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~G 233 (276)
T PF03059_consen 194 DVVFLAALVG---MDAEPKEEILEHLAKHMAPGARLVVRSAHG 233 (276)
T ss_dssp SEEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--G
T ss_pred CEEEEhhhcc---cccchHHHHHHHHHhhCCCCcEEEEecchh
Confidence 9997764331 133577899999999999999998875443
No 252
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=95.36 E-value=0.071 Score=54.83 Aligned_cols=105 Identities=20% Similarity=0.167 Sum_probs=63.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+|||||||-=-++..|.... ...|+|+||+..+++....-....+.... .-..|+....+ ....|+.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~-------~~v~Dl~~~~~--~~~~Dla 175 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHD-------ARVRDLLSDPP--KEPADLA 175 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEE-------EEEE-TTTSHT--TSEESEE
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcc-------eeEeeeeccCC--CCCcchh
Confidence 47899999999998888877553 35999999999999999887766654432 11223333322 3469999
Q ss_pred EEccchhhhccCHHHH-HHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 371 SCQFCIHYSFESVQQA-RCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 371 i~~~vLh~lFes~~d~-~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+..=++|.+ +.. ....-++...++- =++++++|..
T Consensus 176 LllK~lp~l----e~q~~g~g~~ll~~~~~-~~~vVSfPtr 211 (251)
T PF07091_consen 176 LLLKTLPCL----ERQRRGAGLELLDALRS-PHVVVSFPTR 211 (251)
T ss_dssp EEET-HHHH----HHHSTTHHHHHHHHSCE-SEEEEEEES-
T ss_pred hHHHHHHHH----HHHhcchHHHHHHHhCC-CeEEEecccc
Confidence 999889887 322 2222233333322 2666676644
No 253
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.31 E-value=0.14 Score=51.25 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=68.3
Q ss_pred CCCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742 290 LGSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD 368 (597)
Q Consensus 290 ~~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD 368 (597)
.+++.+||=||..+|....+..+- +-..++|++.|+.+....-....+...... + ..++...+.+..--+..|
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~P---I---L~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIP---I---LEDARKPEKYRHLVEKVD 147 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCcee---e---ecccCCcHHhhhhccccc
Confidence 347899999999999988887653 334799999999887665544443322111 0 111111111111123588
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+|++-- ....+.+-+..|+...||+||++++.+
T Consensus 148 viy~DV------AQp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 148 VIYQDV------AQPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred EEEEec------CCchHHHHHHHHHHHhcccCCeEEEEE
Confidence 887642 234678889999999999999888754
No 254
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.15 E-value=0.58 Score=48.02 Aligned_cols=104 Identities=16% Similarity=0.094 Sum_probs=61.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCC-CCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDK-ALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~-~~sFDvV 370 (597)
.+++||=||=+.-.-+...+.....+|+.+||++..|+..++.....+.... .+..|+..++|.. .++||++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~-------~~~~DlR~~LP~~~~~~fD~f 116 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIE-------AVHYDLRDPLPEELRGKFDVF 116 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EE-------EE---TTS---TTTSS-BSEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceE-------EEEecccccCCHHHhcCCCEE
Confidence 4789999984433222222223357999999999999999988888776633 5666777888754 4689999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCc-EEEEEe
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGG-FFVGTV 407 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG-~fIit~ 407 (597)
++--. .+.+.+.-|+......||.-| ..++.+
T Consensus 117 ~TDPP-----yT~~G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 117 FTDPP-----YTPEGLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp EE--------SSHHHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred EeCCC-----CCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 88532 355788899999999998755 444443
No 255
>KOG2187|consensus
Probab=94.96 E-value=0.031 Score=62.35 Aligned_cols=52 Identities=23% Similarity=0.263 Sum_probs=44.7
Q ss_pred CCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcc
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEE 343 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~ 343 (597)
..+..+||+.||+|.+...+++ ++..|+||++++.++..|+.++..++..+-
T Consensus 382 ~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV~dA~~nA~~NgisNa 433 (534)
T KOG2187|consen 382 PADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAVEDAEKNAQINGISNA 433 (534)
T ss_pred CCCcEEEEEeecCCceehhhhc-cccceeeeecChhhcchhhhcchhcCccce
Confidence 3568999999999999988774 557999999999999999999888777653
No 256
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=94.86 E-value=0.026 Score=54.31 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=64.9
Q ss_pred CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHH-HHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIED-CKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~-A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
++++|=+|+..=+.=...+..|.+++.-|+.++--++. .+.+... +...+....+....++||++.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ss-------------i~p~df~~~~~~y~~~fD~~a 68 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSS-------------ILPVDFAKNWQKYAGSFDFAA 68 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccccc-------------ccHHHHHHHHHHhhccchhhh
Confidence 46778888876555444566777789888876532211 1112111 112222223333346799999
Q ss_pred Eccchhhhc-------cCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 372 CQFCIHYSF-------ESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 372 ~~~vLh~lF-------es~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
|..++.|.= -+.......+.++.++|||||.|++.+|-.
T Consensus 69 s~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 69 SFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred eechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 998887640 011223567888999999999999998855
No 257
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=94.79 E-value=0.17 Score=55.27 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=35.6
Q ss_pred CCceeEEEEccchhhhccC----------------------------------HHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 364 ALELDLVSCQFCIHYSFES----------------------------------VQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 364 ~~sFDvVi~~~vLh~lFes----------------------------------~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
.++.+++++.++|||+-.- ..|+..+|+.=++-|.|||.++++++.
T Consensus 160 ~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~G 239 (386)
T PLN02668 160 ARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLG 239 (386)
T ss_pred CCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEec
Confidence 3679999999999997210 024566777778889999999998865
Q ss_pred h
Q psy17742 410 S 410 (597)
Q Consensus 410 ~ 410 (597)
.
T Consensus 240 r 240 (386)
T PLN02668 240 R 240 (386)
T ss_pred C
Confidence 4
No 258
>PRK10742 putative methyltransferase; Provisional
Probab=94.65 E-value=0.15 Score=52.62 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=37.4
Q ss_pred EEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE 337 (597)
Q Consensus 295 rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~ 337 (597)
+|||+-+|.|.++..++..|. .|+++|-++.+....+..+..
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~r 132 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLAR 132 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHH
Confidence 899999999999999999986 699999999998877766554
No 259
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.58 E-value=0.032 Score=50.45 Aligned_cols=43 Identities=14% Similarity=0.320 Sum_probs=31.4
Q ss_pred ceeEEEEccchhhhc--cCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 366 ELDLVSCQFCIHYSF--ESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 366 sFDvVi~~~vLh~lF--es~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
+||+|+|..+.-|+. -..+.+..+++.++++|+|||+||+.--
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 499999988843331 1235688999999999999999999743
No 260
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=94.57 E-value=0.18 Score=53.45 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=47.7
Q ss_pred HHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhh
Q psy17742 275 MLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEEL 338 (597)
Q Consensus 275 ~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~ 338 (597)
+|+.+.+..+... ++..++|.=||.|+++..+++. +..+|+|+|.++.+++.|+++....
T Consensus 7 Vll~Evl~~L~~~----~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~ 67 (305)
T TIGR00006 7 VLLDEVVEGLNIK----PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF 67 (305)
T ss_pred hhHHHHHHhcCcC----CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc
Confidence 4666666655332 5679999999999999998765 2368999999999999999987653
No 261
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=94.40 E-value=0.15 Score=55.75 Aligned_cols=108 Identities=21% Similarity=0.304 Sum_probs=70.5
Q ss_pred CCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhc-cccccccceeehhhhccCCCCCCceeE
Q psy17742 293 PIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKE-EARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~-~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
+.+|||.=+|+|.=++.++.. +...|+.-|+|+.+++..+++..-++... .. .....|....+......||+
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~-----~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERI-----EVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCE-----EEEES-HHHHHCHSTT-EEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceE-----EEehhhHHHHhhhccccCCE
Confidence 468999999999988877654 56799999999999999999977666554 11 12233322222123357999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i 413 (597)
|=.- .+ ..+..+|..+.+.++.||+|.+|..+...+
T Consensus 125 IDlD-Pf-------GSp~pfldsA~~~v~~gGll~vTaTD~a~L 160 (377)
T PF02005_consen 125 IDLD-PF-------GSPAPFLDSALQAVKDGGLLCVTATDTAVL 160 (377)
T ss_dssp EEE---S-------S--HHHHHHHHHHEEEEEEEEEEE--HHHH
T ss_pred EEeC-CC-------CCccHhHHHHHHHhhcCCEEEEeccccccc
Confidence 9432 11 456679999999999999999998776444
No 262
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.38 E-value=0.094 Score=58.58 Aligned_cols=98 Identities=18% Similarity=0.207 Sum_probs=63.4
Q ss_pred CEEEEECCCCChhHHHHHhcCC--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 294 IKVLDMGSGKGGDMLKWINGGV--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
-.|+|+..|.|+++..+.+..+ -.|+-+ ..+.-+...-.| +.. + .-.|.-+.++.-..+||+|.
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydR----GLI-------G--~yhDWCE~fsTYPRTYDLlH 432 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDR----GLI-------G--VYHDWCEAFSTYPRTYDLLH 432 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhc----ccc-------h--hccchhhccCCCCcchhhee
Confidence 4699999999999999987663 122222 122222222111 110 0 01123455655567899999
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
+...|... .+.-++..+|-++-|+|+|||++|+-
T Consensus 433 A~~lfs~~-~~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 433 ADGLFSLY-KDRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred hhhhhhhh-cccccHHHHHHHhHhhcCCCceEEEe
Confidence 99887664 44457889999999999999999884
No 263
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=94.11 E-value=0.12 Score=51.17 Aligned_cols=100 Identities=12% Similarity=0.103 Sum_probs=66.3
Q ss_pred CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEc
Q psy17742 294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQ 373 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~ 373 (597)
..+.|||.|+|.++...++. ..+|++++.+|.-...|.++..-.+..+.. ....| .....+ ...|+|+|-
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~e------vv~gD-A~~y~f--e~ADvvicE 103 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWE------VVVGD-ARDYDF--ENADVVICE 103 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceE------EEecc-cccccc--cccceeHHH
Confidence 67999999999999877665 579999999999988888875333322211 22222 223333 347999986
Q ss_pred cchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742 374 FCIHYSFESVQQARCMLKNAAECLKPGGFFVG 405 (597)
Q Consensus 374 ~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi 405 (597)
..=..+. .+....+++.+.+.||-.|.++-
T Consensus 104 mlDTaLi--~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 104 MLDTALI--EEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhHHhh--cccccHHHHHHHHHhhcCCcccc
Confidence 4311111 13445678888889998887753
No 264
>PHA01634 hypothetical protein
Probab=94.10 E-value=0.19 Score=46.87 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=42.1
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhh
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL 338 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~ 338 (597)
.+.+|||||.+.|.-++.++..|+..|+++++++...+..++..+..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 57899999999999999999999999999999999999888865544
No 265
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=94.09 E-value=1.6 Score=45.18 Aligned_cols=113 Identities=12% Similarity=0.050 Sum_probs=64.7
Q ss_pred CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh--ccccccccceeehhhhccCCC---CCCcee
Q psy17742 294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK--EEARPYRRNVFSAELRSQYED---KALELD 368 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~--~~~~~~~~d~F~~dl~e~l~~---~~~sFD 368 (597)
..|+.||||-=.-...+.......++=+|.- ++++.-++.+...+.. .....+..|+. .++.+.+.. ....--
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P-~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~-~~w~~~L~~~gfd~~~pt 160 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQP-AVLAFKEKVLAELGAEPPAHRRAVPVDLR-QDWPAALAAAGFDPTAPT 160 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCCh-HHHHHHHHHHHHcCCCCCCceEEeccCch-hhHHHHHHhCCCCCCCCe
Confidence 4699999986544443322211355555543 3444444445443211 11111112222 222222211 112344
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
++++-.++.|+ +.+....+|+.+.+...||+.+++...+.
T Consensus 161 l~i~EGvl~YL--~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 161 AWLWEGLLMYL--TEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred eeeecchhhcC--CHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 77888889997 77889999999999999999999998765
No 266
>KOG2793|consensus
Probab=94.09 E-value=0.2 Score=51.69 Aligned_cols=113 Identities=17% Similarity=0.048 Sum_probs=64.5
Q ss_pred CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccc--cccccceeehhhhccCCCCCCc-eeE
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEA--RPYRRNVFSAELRSQYEDKALE-LDL 369 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~--~~~~~d~F~~dl~e~l~~~~~s-FDv 369 (597)
..+||++|+|+|.....++......|+..|+..........+ ......... .......+.-+........... ||+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~-~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNR-DKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhh-hhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 467999999999887777775556899999876654433322 111111100 0000001111100011111122 999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
|++..++-.- +....++.-++.+|..+|.+++.++-.
T Consensus 166 ilasDvvy~~----~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 166 ILASDVVYEE----ESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEeeeeecC----CcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 9999987443 556677888888888888666666544
No 267
>KOG3115|consensus
Probab=93.93 E-value=0.11 Score=52.01 Aligned_cols=47 Identities=21% Similarity=0.300 Sum_probs=38.9
Q ss_pred CCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELK 339 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~ 339 (597)
...+.|||||-|+++..++... -.-++|++|-...-+..++|+....
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR 108 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALR 108 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHh
Confidence 3569999999999999988764 3468999999998888888876654
No 268
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=93.78 E-value=0.52 Score=53.18 Aligned_cols=115 Identities=19% Similarity=0.193 Sum_probs=72.7
Q ss_pred CCCEEEEECCCCChhHHHHHhc----C-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC---CC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING----G-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE---DK 363 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~----g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~---~~ 363 (597)
+..+|+|-.||+|+.+....+. . -..++|.++++.....|+-+.--.+.........++. +..+.. +.
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dt----l~~~~~~~~~~ 261 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDT----LSNPKHDDKDD 261 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccc----ccCCcccccCC
Confidence 4569999999999987764321 1 1469999999999999998765554432111011111 222222 23
Q ss_pred CCceeEEEEccchh---h-----------------hccCHHHH-HHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 364 ALELDLVSCQFCIH---Y-----------------SFESVQQA-RCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 364 ~~sFDvVi~~~vLh---~-----------------lFes~~d~-~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
.++||+|+++--+. | .+.+.... ..+++.+...|+|||+.-+.+|+.
T Consensus 262 ~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~g 329 (489)
T COG0286 262 KGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDG 329 (489)
T ss_pred ccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCC
Confidence 46799998864332 1 12222223 789999999999999666666655
No 269
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.29 E-value=0.18 Score=52.51 Aligned_cols=43 Identities=23% Similarity=0.371 Sum_probs=38.0
Q ss_pred EEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE 337 (597)
Q Consensus 295 rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~ 337 (597)
+|||+.||.|+...-+...|+..+.++|+++.+++..+.++..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~ 44 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN 44 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC
Confidence 5999999999999999888987889999999999888877643
No 270
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.17 E-value=0.35 Score=52.06 Aligned_cols=95 Identities=15% Similarity=0.098 Sum_probs=63.5
Q ss_pred CCCCCEEEEECCC-CChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742 290 LGSPIKVLDMGSG-KGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL 367 (597)
Q Consensus 290 ~~~~~rVLDLGCG-tG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF 367 (597)
.+++.+|+=+|+| -|..+.++++ .+ .+|+++|.|++-++.|++...+.-... . ..+..+.+. +.|
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~--------~-~~~~~~~~~---~~~ 230 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINS--------S-DSDALEAVK---EIA 230 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEc--------C-CchhhHHhH---hhC
Confidence 3478999999988 2346677777 46 799999999999999987644321110 0 111222222 239
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
|+|+..-. ...+....+.||+||.+++.-.
T Consensus 231 d~ii~tv~-----------~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 231 DAIIDTVG-----------PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred cEEEECCC-----------hhhHHHHHHHHhcCCEEEEECC
Confidence 99987643 3456777889999999988643
No 271
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.15 E-value=0.23 Score=48.56 Aligned_cols=41 Identities=22% Similarity=0.106 Sum_probs=34.7
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKT 333 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~e 333 (597)
++..|||.-||+|..+......| .+++|+|+++..++.|++
T Consensus 191 ~gdiVlDpF~GSGTT~~aa~~l~-R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 191 PGDIVLDPFAGSGTTAVAAEELG-RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred cceeeehhhhccChHHHHHHHcC-CeEEEEeCCHHHHHHhcC
Confidence 68999999999999999888877 589999999999999874
No 272
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.65 E-value=0.41 Score=51.49 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=60.4
Q ss_pred CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
.+.+|||+|.|.|.-+..+... -...++.++.|+..-+............. .... ..-+..+ ...++. -|.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~-td~r-~s~vt~d-Rl~lp~----ad~ 185 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEK-TDWR-ASDVTED-RLSLPA----ADL 185 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccccc-CCCC-CCccchh-ccCCCc----cce
Confidence 4567999999988766433221 12456677777654433332222211110 0000 0011111 122332 344
Q ss_pred EEEccchhhhc--cCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHH
Q psy17742 370 VSCQFCIHYSF--ESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM 414 (597)
Q Consensus 370 Vi~~~vLh~lF--es~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~ 414 (597)
+.+..++|-+. ..+..+...++.+..++.|||.|++.-+....-+
T Consensus 186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf 232 (484)
T COG5459 186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGF 232 (484)
T ss_pred eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhH
Confidence 44444444432 2334455688999999999999999877664333
No 273
>PRK11524 putative methyltransferase; Provisional
Probab=92.63 E-value=0.31 Score=50.95 Aligned_cols=45 Identities=20% Similarity=0.019 Sum_probs=40.9
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE 337 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~ 337 (597)
++..|||--||+|..+....+.| .+++|+|++++.++.|++|+..
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASG-RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcC-CCEEEEeCCHHHHHHHHHHHHh
Confidence 68999999999999999887777 6899999999999999999754
No 274
>KOG1122|consensus
Probab=92.62 E-value=0.71 Score=50.72 Aligned_cols=114 Identities=18% Similarity=0.175 Sum_probs=72.3
Q ss_pred CCCCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC--CCC
Q psy17742 290 LGSPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED--KAL 365 (597)
Q Consensus 290 ~~~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~--~~~ 365 (597)
+.++.||||+++..|+=+.+++.. +-..|++.|.+..-+...+.++...+..+-. ....|.. .++. -.+
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~nti------v~n~D~~-ef~~~~~~~ 311 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTI------VSNYDGR-EFPEKEFPG 311 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceE------EEccCcc-cccccccCc
Confidence 457899999999999866554432 2247999999999999999988887765432 1112211 1210 112
Q ss_pred ceeEEEE----cc--chhh-----hccCH-------HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 366 ELDLVSC----QF--CIHY-----SFESV-------QQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 366 sFDvVi~----~~--vLh~-----lFes~-------~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+||-|+. +. ++.- ...+. .-.+++|-.+..++++||+|+-+|-.-
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 6998874 32 1100 00111 124678889999999999999877543
No 275
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=92.57 E-value=1.5 Score=42.53 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=39.1
Q ss_pred eeehh---hhccCCCCCCceeEEEEccchhh---------hccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 351 VFSAE---LRSQYEDKALELDLVSCQFCIHY---------SFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 351 ~F~~d---l~e~l~~~~~sFDvVi~~~vLh~---------lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
.+..| +.+.+....++||.|+-+|--.- +-.+..-+..+|+.+..+|+++|.+.+|..+.
T Consensus 57 ~~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 57 LHGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred ccCCCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 44444 33334334567999999865221 00122346789999999999999999987544
No 276
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.01 E-value=1.8 Score=43.93 Aligned_cols=116 Identities=13% Similarity=0.064 Sum_probs=76.9
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
.+.++.||||-.|.+...+.+.+ ...+++.|+++..++.|.+.....+...+.. ....|....+... ..+|+|
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~-----vr~~dgl~~l~~~-d~~d~i 89 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERID-----VRLGDGLAVLELE-DEIDVI 89 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEE-----EeccCCccccCcc-CCcCEE
Confidence 45669999999999999988776 5689999999999999999988876654331 1112212233332 258888
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe-CChhHHHHHHhh
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV-PDSNQIMARYRR 419 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~-pn~~~i~~~l~~ 419 (597)
+..++=. .-...+|.+-...|+.==+||+.- .+...++..+..
T Consensus 90 vIAGMGG------~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~ 133 (226)
T COG2384 90 VIAGMGG------TLIREILEEGKEKLKGVERLILQPNIHTYELREWLSA 133 (226)
T ss_pred EEeCCcH------HHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHh
Confidence 6654321 345677888777777444555543 233556655554
No 277
>PRK13699 putative methylase; Provisional
Probab=91.32 E-value=0.59 Score=47.43 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=41.6
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK 339 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~ 339 (597)
++..|||--||+|..+....+.| ..++|+|+++...+.|.+|+....
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~-r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSG-RRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcC-CCEEEEecCHHHHHHHHHHHHHHH
Confidence 67899999999999999887777 589999999999999999986643
No 278
>KOG4058|consensus
Probab=91.01 E-value=1.6 Score=41.90 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=39.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhh
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL 338 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~ 338 (597)
+..+.+|||+|.|+.....++.|...-+|+++++-.+..++-+.-..
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~ 118 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRA 118 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHH
Confidence 45789999999999999888888668899999999888777654333
No 279
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=90.95 E-value=0.92 Score=49.15 Aligned_cols=104 Identities=21% Similarity=0.304 Sum_probs=70.0
Q ss_pred CCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 293 PIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
..+|||.=+|+|.=.+.++.. +..+++.-|+||.+++..+++...+...... .+..|....+......||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~------v~n~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAE------VINKDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccce------eecchHHHHHHhcCCCccEEe
Confidence 578999999999988776644 4448999999999999999988766222221 333231111112124688883
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
.- .+ ..+.-++..+.+.++.||++-+|-.+.
T Consensus 127 iD-PF-------GSPaPFlDaA~~s~~~~G~l~vTATD~ 157 (380)
T COG1867 127 ID-PF-------GSPAPFLDAALRSVRRGGLLCVTATDT 157 (380)
T ss_pred cC-CC-------CCCchHHHHHHHHhhcCCEEEEEeccc
Confidence 31 11 334567888888889999999987655
No 280
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=90.94 E-value=1.2 Score=44.61 Aligned_cols=109 Identities=20% Similarity=0.128 Sum_probs=59.1
Q ss_pred CCCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHHH----HHHHHH--HHhhhhhccccccccceeehhhhccCCC
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVSI----EDCKTR--YEELKRKEEARPYRRNVFSAELRSQYED 362 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~mI----e~A~er--~~~~~~~~~~~~~~~d~F~~dl~e~l~~ 362 (597)
+++.+|+|+=.|.|.++.-+... | -..|++.=..+... ...+.+ ..+....+.. .+...+....+
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e------~~~~~~~A~~~- 119 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVE------VIGKPLVALGA- 119 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhh------hhCCcccccCC-
Confidence 37899999999999999877653 1 12566664443311 101100 0000000000 11111111111
Q ss_pred CCCceeEEEEccc---hhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 363 KALELDLVSCQFC---IHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 363 ~~~sFDvVi~~~v---Lh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
....|++..... ||.-+-+.....++...+++.|||||.+++.-
T Consensus 120 -pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 120 -PQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred -CCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 234666655332 33323344678899999999999999998864
No 281
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=90.91 E-value=4.6 Score=43.87 Aligned_cols=47 Identities=13% Similarity=0.216 Sum_probs=36.7
Q ss_pred CCCEEEEECCCCChhHHHHHhc---------CCCEEEEEeCChHHHHHHHHHHHhh
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING---------GVKHVVFADIASVSIEDCKTRYEEL 338 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~---------g~~~V~GIDiS~~mIe~A~er~~~~ 338 (597)
.+..+++||.|+|.++..+++. ...+|.-|++|+.....=++++...
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3578999999999988876542 2468999999999888777666554
No 282
>KOG2671|consensus
Probab=90.89 E-value=0.25 Score=52.94 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHH-------HHHHHhhhhhccccccccceeehhhhc-cCCC
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDC-------KTRYEELKRKEEARPYRRNVFSAELRS-QYED 362 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A-------~er~~~~~~~~~~~~~~~d~F~~dl~e-~l~~ 362 (597)
.+|+-|+|=-.|||+++...+..| +.|+|.||+-.++... +.++++.+... .+-+.+.+|... ++..
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~FG-a~viGtDIDyr~vragrg~~~si~aNFkQYg~~~----~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHFG-AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSS----QFLDVLTADFSNPPLRS 281 (421)
T ss_pred CCCCEEecCccccCceeeehhhhc-ceeeccccchheeecccCCCcchhHhHHHhCCcc----hhhheeeecccCcchhh
Confidence 378999999999999999888888 4999999999988743 23333333221 122455555332 2322
Q ss_pred CCCceeEEEEcc-------------------------chhhhccC-----HHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 363 KALELDLVSCQF-------------------------CIHYSFES-----VQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 363 ~~~sFDvVi~~~-------------------------vLh~lFes-----~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
...||.|+|-- .-|+- .. ..-...+|.-.++.|..||++++-.|..
T Consensus 282 -n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p-~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~~ 357 (421)
T KOG2671|consen 282 -NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYP-STEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPTI 357 (421)
T ss_pred -cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCC-ccchhHHHHHHhhHHHhhHhhhhcCceEEEecCch
Confidence 45799999931 01110 00 0123456667789999999999987743
No 283
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=90.88 E-value=0.42 Score=43.27 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=26.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADI 323 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDi 323 (597)
+.....|||||+|.+..-|...|+ .=.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence 456799999999999998888886 5678886
No 284
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=90.81 E-value=0.78 Score=46.07 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=46.9
Q ss_pred CCCEEEEECCCCChhHHHHHh----c-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCC--C
Q psy17742 292 SPIKVLDMGSGKGGDMLKWIN----G-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDK--A 364 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~----~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~--~ 364 (597)
++..|+++|.-.|+-+..++. . +..+|+||||........ .........+.....++....+........ .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 468999999999998776653 2 346999999964432211 111111111211111222222211221111 1
Q ss_pred CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
..-.+|+. .+-|.. ....+.|+....+|++|+++|+.-
T Consensus 110 ~~~vlVil-Ds~H~~----~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 110 PHPVLVIL-DSSHTH----EHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp -SSEEEEE-SS--------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CCceEEEE-CCCccH----HHHHHHHHHhCccCCCCCEEEEEe
Confidence 12233333 333332 455678888999999999999843
No 285
>KOG2198|consensus
Probab=90.65 E-value=1.2 Score=48.17 Aligned_cols=121 Identities=18% Similarity=0.159 Sum_probs=68.0
Q ss_pred CCCCEEEEECCCCChhHHHHHhcCC-----CEEEEEeCChHHHHHHHHHHHhhhhhcccc-ccccceeehhhhccC-CCC
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWINGGV-----KHVVFADIASVSIEDCKTRYEELKRKEEAR-PYRRNVFSAELRSQY-EDK 363 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~g~-----~~V~GIDiS~~mIe~A~er~~~~~~~~~~~-~~~~d~F~~dl~e~l-~~~ 363 (597)
.++.+|||+++..|+=+..++.... ..|++-|.+..-+.............+... ..-...|........ +..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 4789999999999997766554321 279999999987776665543222211100 000001111110011 112
Q ss_pred CCceeEEEEc-----cc-hhh---hccC----H------HHHHHHHHHHHHhccCCcEEEEEeCChh
Q psy17742 364 ALELDLVSCQ-----FC-IHY---SFES----V------QQARCMLKNAAECLKPGGFFVGTVPDSN 411 (597)
Q Consensus 364 ~~sFDvVi~~-----~v-Lh~---lFes----~------~d~~~~L~~i~rlLKPGG~fIit~pn~~ 411 (597)
...||-|+|- .+ +-. +|.. . .-...+|.+..++||+||.+|-+|-+-.
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 3469988872 00 100 0000 0 1124689999999999999999986653
No 286
>KOG0024|consensus
Probab=90.10 E-value=0.76 Score=49.06 Aligned_cols=105 Identities=18% Similarity=0.123 Sum_probs=64.4
Q ss_pred CCCCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCC
Q psy17742 290 LGSPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKA 364 (597)
Q Consensus 290 ~~~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~ 364 (597)
.+.+.+||=+|+|. |..+..+++. |..+|+.+|+++.-|+.|++. ......... ...-..+ ..+..-. .
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga~~~~~~~----~~~~~~~~~~~v~~~~g-~ 240 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GATVTDPSS----HKSSPQELAELVEKALG-K 240 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CCeEEeecc----ccccHHHHHHHHHhhcc-c
Confidence 34789999999997 6666666654 778999999999999999983 221111100 0000011 1111111 1
Q ss_pred CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
..+|+++-...++ ..++.....||+||.+++.....
T Consensus 241 ~~~d~~~dCsG~~----------~~~~aai~a~r~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 241 KQPDVTFDCSGAE----------VTIRAAIKATRSGGTVVLVGMGA 276 (354)
T ss_pred cCCCeEEEccCch----------HHHHHHHHHhccCCEEEEeccCC
Confidence 2488887654442 34555677899999988765544
No 287
>KOG1253|consensus
Probab=90.01 E-value=0.22 Score=55.45 Aligned_cols=112 Identities=19% Similarity=0.259 Sum_probs=75.9
Q ss_pred CCCEEEEECCCCChhHHHHHhc--CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING--GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~--g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|||.=|++|..++.++.. ++.+|++-|.++..|+..+++..-++......+...|.-. +.-..+.....||+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~--lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANV--LMYEHPMVAKFFDV 186 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHH--HHHhccccccccce
Confidence 5689999999999999998764 5779999999999999998887666444322111111100 11111222356999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i 413 (597)
|-.- .-.....||..+.+.++.||.|.+|..+.-.+
T Consensus 187 IDLD--------PyGs~s~FLDsAvqav~~gGLL~vT~TD~aVL 222 (525)
T KOG1253|consen 187 IDLD--------PYGSPSPFLDSAVQAVRDGGLLCVTCTDMAVL 222 (525)
T ss_pred EecC--------CCCCccHHHHHHHHHhhcCCEEEEEecchHhh
Confidence 8432 11345578999999999999999998765433
No 288
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.57 E-value=0.97 Score=48.81 Aligned_cols=110 Identities=15% Similarity=0.084 Sum_probs=64.2
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||.+|||. |..+..+++. |...++++|.++..++.+++..... ..... ..+.+...+. .+.. ...+|+
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~-vi~~~---~~~~~~~~l~-~~~~-~~~~D~ 257 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAE-TINFE---EVDDVVEALR-ELTG-GRGPDV 257 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcE-EEcCC---cchHHHHHHH-HHcC-CCCCCE
Confidence 568899999987 7777777665 4446999999999999888753211 00000 0000111111 1211 124898
Q ss_pred EEEccch-------hh----hccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCI-------HY----SFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vL-------h~----lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+..-.- ++ .+....+....+..+.++|++||.++...
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 8774211 11 11111233557888999999999998764
No 289
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=89.52 E-value=0.7 Score=46.77 Aligned_cols=61 Identities=16% Similarity=0.213 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHH--Hh-cCCCEEEEEeCChHHHHHHHHHHH
Q psy17742 272 TKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKW--IN-GGVKHVVFADIASVSIEDCKTRYE 336 (597)
Q Consensus 272 vKs~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~l--a~-~g~~~V~GIDiS~~mIe~A~er~~ 336 (597)
+.+.+.++.+..+... .+.++-|-+||.|.++--+ +. .....|+|-||++.+++.|++++.
T Consensus 35 LAsEi~qR~l~~l~~~----~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 35 LASEIFQRALHYLEGK----GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHHHCTSSS-----S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCC----CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 5666777766654332 5689999999999987653 33 235789999999999999998653
No 290
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.28 E-value=0.67 Score=47.34 Aligned_cols=86 Identities=23% Similarity=0.167 Sum_probs=52.9
Q ss_pred CCCCCEEEEECCCCChhHHHH--HhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCC
Q psy17742 290 LGSPIKVLDMGSGKGGDMLKW--INGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKA 364 (597)
Q Consensus 290 ~~~~~rVLDLGCGtG~~l~~l--a~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~ 364 (597)
++++.++||||.|.--.-.-+ ...| ..++|.|+++.+++.|+.....+...... ++-....+ +...+....
T Consensus 76 ~~~~i~~LDIGvGAnCIYPliG~~eYg-wrfvGseid~~sl~sA~~ii~~N~~l~~~---I~lr~qk~~~~if~giig~n 151 (292)
T COG3129 76 PGKNIRILDIGVGANCIYPLIGVHEYG-WRFVGSEIDSQSLSSAKAIISANPGLERA---IRLRRQKDSDAIFNGIIGKN 151 (292)
T ss_pred CcCceEEEeeccCcccccccccceeec-ceeecCccCHHHHHHHHHHHHcCcchhhh---eeEEeccCcccccccccccc
Confidence 356789999998854322211 1234 48899999999999999887665322111 00011111 222333335
Q ss_pred CceeEEEEccchhhh
Q psy17742 365 LELDLVSCQFCIHYS 379 (597)
Q Consensus 365 ~sFDvVi~~~vLh~l 379 (597)
+.||+++|+--+|-.
T Consensus 152 E~yd~tlCNPPFh~s 166 (292)
T COG3129 152 ERYDATLCNPPFHDS 166 (292)
T ss_pred ceeeeEecCCCcchh
Confidence 679999999988764
No 291
>KOG1099|consensus
Probab=88.95 E-value=0.66 Score=47.33 Aligned_cols=104 Identities=23% Similarity=0.241 Sum_probs=61.3
Q ss_pred CCEEEEECCCCChhHHHHHhcC--------C--CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh----hhc
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGG--------V--KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----LRS 358 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g--------~--~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d----l~e 358 (597)
-.+|+||+...|.|+..+.+.- . ..+++||+-+-+ .-.+.. ...+|+-... +.+
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------PI~GV~----qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------PIEGVI----QLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------ccCceE----EeecccCCHhHHHHHHH
Confidence 3679999999999988765421 1 239999986532 000100 0001121111 223
Q ss_pred cCCCCCCceeEEEEccc-----hhhhcc--CHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 359 QYEDKALELDLVSCQFC-----IHYSFE--SVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 359 ~l~~~~~sFDvVi~~~v-----Lh~lFe--s~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
.|. ..+.|+|+|-.+ +|-+-+ ..+-+..+|.-...+|||||.|+.-+...
T Consensus 110 hfg--gekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg 166 (294)
T KOG1099|consen 110 HFG--GEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRG 166 (294)
T ss_pred HhC--CCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhcc
Confidence 333 257999999654 665400 11234566777789999999999877665
No 292
>KOG2539|consensus
Probab=88.47 E-value=1.9 Score=48.03 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=67.4
Q ss_pred CCCEEEEECCCCCh--hHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCC-CCce
Q psy17742 292 SPIKVLDMGSGKGG--DMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDK-ALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGtG~--~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~-~~sF 367 (597)
.+..++|+|.|.|. ++...+-.+ ...|+.||.|..|........++.... ....+....|.. ..++.. ...|
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~-g~~~v~~~~~~r---~~~pi~~~~~y 275 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHI-GEPIVRKLVFHR---QRLPIDIKNGY 275 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhc-Cchhccccchhc---ccCCCCcccce
Confidence 45678888887654 333322222 467999999999999988876651111 000001112221 122222 2359
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHH-HHhccCCcEEEEEeCCh
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNA-AECLKPGGFFVGTVPDS 410 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i-~rlLKPGG~fIit~pn~ 410 (597)
|+|+|.+.+|++ .+........+++ .+..++||++++.-...
T Consensus 276 Dlvi~ah~l~~~-~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 276 DLVICAHKLHEL-GSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeEEeeeeeecc-CCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 999999999986 4444444455444 55668899888865444
No 293
>KOG1562|consensus
Probab=88.46 E-value=1.7 Score=46.00 Aligned_cols=111 Identities=18% Similarity=0.240 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---hhccCCCCCCce
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---LRSQYEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l~e~l~~~~~sF 367 (597)
.+++||=||-|.|+.++...++ .+..+.-+|+....++..++-.+......... .. .....| +.+... .++|
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~-~v-~l~iGDG~~fl~~~~--~~~~ 196 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGK-KV-KLLIGDGFLFLEDLK--ENPF 196 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCC-ce-EEEeccHHHHHHHhc--cCCc
Confidence 4688999999999999876554 35689999999999999988777654331110 00 011222 233333 3569
Q ss_pred eEEEEccchhhhccCH-HHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 368 DLVSCQFCIHYSFESV-QQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 368 DvVi~~~vLh~lFes~-~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+|+.-..=--. ... --.+.++.-+.+.||+||+++..-
T Consensus 197 dVii~dssdpvg-pa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 197 DVIITDSSDPVG-PACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred eEEEEecCCccc-hHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 999864220000 000 123567888999999999998765
No 294
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=88.12 E-value=9.2 Score=39.74 Aligned_cols=108 Identities=15% Similarity=0.215 Sum_probs=66.3
Q ss_pred CCCEEEEECCCCChhHHHHHh----cC-CCEEEEEeCChHHHHHHHHHH-Hhhhhhccccccccceeehhhhc---cCCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWIN----GG-VKHVVFADIASVSIEDCKTRY-EELKRKEEARPYRRNVFSAELRS---QYED 362 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~----~g-~~~V~GIDiS~~mIe~A~er~-~~~~~~~~~~~~~~d~F~~dl~e---~l~~ 362 (597)
.+...+|+|+|+..-+..+++ .+ ...++.+|+|...+....+.+ .+....... -+..+... .++
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~------~l~~~~~~~La~~~- 150 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVN------ALCGDYELALAELP- 150 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEe------ehhhhHHHHHhccc-
Confidence 367899999999876555443 33 358999999999887544433 222211110 22222111 222
Q ss_pred CCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 363 KALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 363 ~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
..+.==.++...++..+ +.++...||..+...|+||-+|++-+-
T Consensus 151 ~~~~Rl~~flGStlGN~--tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 151 RGGRRLFVFLGSTLGNL--TPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred CCCeEEEEEecccccCC--ChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 21222223334446665 667888999999999999999988663
No 295
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=87.35 E-value=1.2 Score=45.58 Aligned_cols=77 Identities=17% Similarity=0.124 Sum_probs=40.9
Q ss_pred CEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHH---HHHHhhhhh-----ccccccccceeehhhhccCCCCCC
Q psy17742 294 IKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCK---TRYEELKRK-----EEARPYRRNVFSAELRSQYEDKAL 365 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~---er~~~~~~~-----~~~~~~~~d~F~~dl~e~l~~~~~ 365 (597)
.+|||.=+|-|.++.-++..|. +|+|++-|+.+-...+ +++...... .+. ..+..+..+.+.....
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri-----~l~~~d~~~~L~~~~~ 150 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRI-----QLIHGDALEYLRQPDN 150 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHE-----EEEES-CCCHCCCHSS
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCC-----EEEcCCHHHHHhhcCC
Confidence 4899999999999999888885 8999999998755444 444332111 111 1334443333443346
Q ss_pred ceeEEEEccch
Q psy17742 366 ELDLVSCQFCI 376 (597)
Q Consensus 366 sFDvVi~~~vL 376 (597)
+||+|+.--++
T Consensus 151 s~DVVY~DPMF 161 (234)
T PF04445_consen 151 SFDVVYFDPMF 161 (234)
T ss_dssp --SEEEE--S-
T ss_pred CCCEEEECCCC
Confidence 79999985444
No 296
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=87.28 E-value=2.4 Score=44.95 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=50.0
Q ss_pred HHHHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742 274 SMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELK 339 (597)
Q Consensus 274 s~LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~ 339 (597)
.+|+.+.+..+... ++...||.--|.|+++..++... ..+++|+|-++.+|+.|+++.....
T Consensus 9 pVLl~E~i~~L~~~----~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~ 72 (314)
T COG0275 9 PVLLNEVVELLAPK----PDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD 72 (314)
T ss_pred chHHHHHHHhcccC----CCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC
Confidence 35777777765443 67899999999999999988765 3579999999999999999876543
No 297
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.61 E-value=2.6 Score=45.39 Aligned_cols=100 Identities=20% Similarity=0.103 Sum_probs=63.4
Q ss_pred CCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh-hhccCCCCCCceeE
Q psy17742 293 PIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE-LRSQYEDKALELDL 369 (597)
Q Consensus 293 ~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d-l~e~l~~~~~sFDv 369 (597)
+.+|+=+|||. |..+..+++ .|...|+.+|+++.-++.|++........+.. . . ... ....+.. ...||+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~----~-~-~~~~~~~~~t~-g~g~D~ 241 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPS----E-D-DAGAEILELTG-GRGADV 241 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCc----c-c-cHHHHHHHHhC-CCCCCE
Confidence 34899999998 666555554 46789999999999999998854332111110 0 0 000 0001111 125999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
|+-.-. ...++..+.++++|||.+++.-..
T Consensus 242 vie~~G----------~~~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 242 VIEAVG----------SPPALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred EEECCC----------CHHHHHHHHHHhcCCCEEEEEecc
Confidence 876543 124788899999999999876543
No 298
>KOG1501|consensus
Probab=86.46 E-value=0.88 Score=50.25 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=43.5
Q ss_pred CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK 341 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~ 341 (597)
..-|||||.|||.++......|...|++++.=..|++.|++-..+++..
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~S 115 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMS 115 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCc
Confidence 4579999999999999999999889999999999999999987776554
No 299
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=84.61 E-value=4.3 Score=41.97 Aligned_cols=98 Identities=18% Similarity=0.110 Sum_probs=57.7
Q ss_pred CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+||..|+|. |..+..+++....+|++++.++...+.+++.. ...... .........+ .... .+.+|+|
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g----~~~~~~-~~~~~~~~~~-~~~~--~~~~D~v 236 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG----ADEVLN-SLDDSPKDKK-AAGL--GGGFDVI 236 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC----CCEEEc-CCCcCHHHHH-HHhc--CCCceEE
Confidence 567899988763 66777766643357999999999888775421 110000 0000000001 1111 2459998
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+..... ...+..+.++|++||.++...
T Consensus 237 id~~g~----------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 237 FDFVGT----------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred EECCCC----------HHHHHHHHHHhhcCCEEEEEC
Confidence 764211 236777889999999998754
No 300
>KOG1596|consensus
Probab=84.56 E-value=3.5 Score=42.57 Aligned_cols=101 Identities=24% Similarity=0.257 Sum_probs=60.9
Q ss_pred CCCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChHH----HHHHHHHHHhhhhhccccccccceeehhhhccCCCCC
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASVS----IEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKA 364 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~m----Ie~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~ 364 (597)
.++.+||=||++.|....+..+. | -.-|++++.|..+ +..|++|-+-.. ++.|.-.. ..+...-
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiP-------IiEDArhP---~KYRmlV 224 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIP-------IIEDARHP---AKYRMLV 224 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCcee-------eeccCCCc---hheeeee
Confidence 37899999999999987776553 2 2369999999754 444554422111 11111100 0000001
Q ss_pred CceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 365 ~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+..|+|++- + ...++.+.+.-|+.-.||+||.|++++
T Consensus 225 gmVDvIFaD--v----aqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 225 GMVDVIFAD--V----AQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred eeEEEEecc--C----CCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 236666553 1 233566777889999999999999976
No 301
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=84.45 E-value=3 Score=47.49 Aligned_cols=112 Identities=21% Similarity=0.241 Sum_probs=62.8
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhh-hhccccccccc----eeehh----hhccC
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELK-RKEEARPYRRN----VFSAE----LRSQY 360 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~-~~~~~~~~~~d----~F~~d----l~e~l 360 (597)
++.+||=+|||. |..+...++. |. .|+++|.++.-++.+++.-...- ......-.... ....+ ....+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 689999999997 5455555544 54 89999999999988877321100 00000000000 00001 00111
Q ss_pred CCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 361 EDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 361 ~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
...-+.+|+|+..-....- ..+..+.+++.+.+||||.++..-.
T Consensus 243 ~~~~~gaDVVIetag~pg~----~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGK----PAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCCCcc----cCcchHHHHHHHhcCCCCEEEEEcc
Confidence 1111359999886543211 2233345999999999999876543
No 302
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.08 E-value=55 Score=35.10 Aligned_cols=208 Identities=13% Similarity=0.099 Sum_probs=109.4
Q ss_pred CEEEEECCCC--ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccc-cc-----ccceeehhhhccCCCCCC
Q psy17742 294 IKVLDMGSGK--GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEAR-PY-----RRNVFSAELRSQYEDKAL 365 (597)
Q Consensus 294 ~rVLDLGCGt--G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~-~~-----~~d~F~~dl~e~l~~~~~ 365 (597)
.+|-=||+|+ .+++..++..|+ .|+..|++++.++.++.+........... .. -...+..++.+.+ .
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av----~ 82 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACV----A 82 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHh----c
Confidence 5688899995 345566777785 99999999999887766544321110000 00 0001111111111 2
Q ss_pred ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCc
Q psy17742 366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLF 445 (597)
Q Consensus 366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~f 445 (597)
..|+|+-. +.+..+-...+++++-+.++|+. ++.+.-+.-.+ ..+... ......+.-.+|-++.
T Consensus 83 ~aDlViEa-----vpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~-s~la~~--~~~p~R~~g~HffnP~------- 146 (321)
T PRK07066 83 DADFIQES-----APEREALKLELHERISRAAKPDA-IIASSTSGLLP-TDFYAR--ATHPERCVVGHPFNPV------- 146 (321)
T ss_pred CCCEEEEC-----CcCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCH-HHHHHh--cCCcccEEEEecCCcc-------
Confidence 36777654 34666777889999999999987 33333233222 222211 1122445556665421
Q ss_pred ccceeeeccccccccccCCC---HHHHHHHHHHcCCeEEEE-EecHHHHHHHhhcccchHHHHHHhhhccCCcccCCCHH
Q psy17742 446 GAKYDFNLEGVVNCPEFLVY---FPLLERIAGEFGLKRILK-ENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKA 521 (597)
Q Consensus 446 G~~Y~F~L~d~Vn~pEYlv~---~e~L~~La~eaGfelV~~-~~F~ef~~e~~~~~~~~~Ll~rM~~l~~~~~~g~Ls~~ 521 (597)
|.--|-+.|. ---.+ .+.+.++++..|.+.|.. +.-..|.-+..... -+.+-+..++ .|..|.+
T Consensus 147 ---~~~pLVEVv~--g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a---~~~EA~~lv~----eGvas~e 214 (321)
T PRK07066 147 ---YLLPLVEVLG--GERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEA---LWREALHLVN----EGVATTG 214 (321)
T ss_pred ---ccCceEEEeC--CCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHH---HHHHHHHHHH----hCCCCHH
Confidence 1011111111 00112 345678889999999877 57777766554321 1222333333 3567888
Q ss_pred HHHHHHhhceeEEE
Q psy17742 522 EWEAITLYQVFAFE 535 (597)
Q Consensus 522 E~E~~~LY~~FvF~ 535 (597)
+-+.+ +-..+-|+
T Consensus 215 dID~a-~~~g~g~r 227 (321)
T PRK07066 215 EIDDA-IRFGAGIR 227 (321)
T ss_pred HHHHH-HHhCCCCC
Confidence 87766 33344444
No 303
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=83.71 E-value=2 Score=45.71 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=41.1
Q ss_pred HHHHHHhhcccCCCCCCCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHh
Q psy17742 276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEE 337 (597)
Q Consensus 276 LI~~~l~~l~~~~~~~~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~ 337 (597)
|+.+.+..+.. .++..+||.=-|.|+++..+++. +..+|+|+|.++.+++.|++++..
T Consensus 8 ll~Evl~~L~~----~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~ 66 (310)
T PF01795_consen 8 LLKEVLEALNP----KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKK 66 (310)
T ss_dssp THHHHHHHHT------TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCC
T ss_pred cHHHHHHhhCc----CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhh
Confidence 55555554432 26789999999999999998864 337999999999999999876543
No 304
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=83.49 E-value=1.7 Score=46.23 Aligned_cols=41 Identities=20% Similarity=0.368 Sum_probs=34.7
Q ss_pred ceeEEEEccchhhhc-cCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 366 ELDLVSCQFCIHYSF-ESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 366 sFDvVi~~~vLh~lF-es~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
..|+|...|.++-+| ++...-.+||.++...++||..|++.
T Consensus 200 ~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv 241 (315)
T PF11312_consen 200 SPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV 241 (315)
T ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence 478999999998887 45567789999999999999988775
No 305
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.78 E-value=12 Score=39.78 Aligned_cols=169 Identities=15% Similarity=0.055 Sum_probs=93.8
Q ss_pred CEEEEECCCCChhHHHHHhcC--CCEEEEEeCChHHHHHHHHHHHhhhhhc--cccccccceeehhhhccCCCC---CCc
Q psy17742 294 IKVLDMGSGKGGDMLKWINGG--VKHVVFADIASVSIEDCKTRYEELKRKE--EARPYRRNVFSAELRSQYEDK---ALE 366 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~--~~~~~~~d~F~~dl~e~l~~~---~~s 366 (597)
..|+-||||- ++..+.-.+ ...|+-+|. |+.++.=++.+.+.+... ....+..+++..+....+... ...
T Consensus 94 ~qvViLgaGL--DTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 94 RQVVILGAGL--DTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred cEEEEecccc--ccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 5699999984 333322111 136777775 445555555566555321 111122334434433333321 122
Q ss_pred eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcc
Q psy17742 367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFG 446 (597)
Q Consensus 367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG 446 (597)
-=++++-+++.|+ +++...++|..|..++.||-.+++..........+.+... -+..+...... .|
T Consensus 171 pt~~iaEGLl~YL--~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------~~ 236 (297)
T COG3315 171 PTLWIAEGLLMYL--PEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPA---ARKTMRGEDLD---------RG 236 (297)
T ss_pred CeEEEeccccccC--CHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchh---hhhhccccccc---------cc
Confidence 3478888889998 6788999999999999999999988764444433322100 00000000000 00
Q ss_pred cceeeeccccccccccC-CCHHHHHHHHHHcCCeEEEEEecHHHHH
Q psy17742 447 AKYDFNLEGVVNCPEFL-VYFPLLERIAGEFGLKRILKENFRSFYL 491 (597)
Q Consensus 447 ~~Y~F~L~d~Vn~pEYl-v~~e~L~~La~eaGfelV~~~~F~ef~~ 491 (597)
-+.|. ..+.++...+.+.|+..+......+...
T Consensus 237 ------------e~~~~~~~~~e~~~~l~~~g~~~~~~~~~~~~~~ 270 (297)
T COG3315 237 ------------ELVYFGDDPAEIETWLAERGWRSTLNRTTEDLAA 270 (297)
T ss_pred ------------cceeccCCHHHHHHHHHhcCEEEEecCCcHHHHH
Confidence 01122 3478899999999999988764444443
No 306
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=82.65 E-value=3.3 Score=43.80 Aligned_cols=96 Identities=16% Similarity=0.156 Sum_probs=56.3
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=+|||. |..+..+++. |...|+++|.+++-++.+++.-...-.. .-..+..+ +....+.+|+
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~---------~~~~~~~~-~~~~~g~~D~ 238 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVN---------PQNDDLDH-YKAEKGYFDV 238 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEec---------CCcccHHH-HhccCCCCCE
Confidence 467899898863 4455555554 5557999999999888887632111000 00001111 1111235898
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+..-.- ...+..+.++|++||.++..-
T Consensus 239 vid~~G~----------~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 239 SFEVSGH----------PSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred EEECCCC----------HHHHHHHHHHhhcCCEEEEEc
Confidence 8764221 135667778999999998754
No 307
>KOG2920|consensus
Probab=81.01 E-value=1.3 Score=46.51 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=32.3
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHH
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIE 329 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe 329 (597)
.+++|||+|||.|...+.....+...+...|.+...++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 57899999999999888877777668899999888763
No 308
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=80.64 E-value=8.2 Score=38.11 Aligned_cols=98 Identities=21% Similarity=0.145 Sum_probs=57.0
Q ss_pred CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+||-+|+|. |..+..+++....+|++++.++...+.+++........... ..+...+. . ...+.+|+|
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~--~-~~~~~~d~v 205 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKE-----EDLEEELR--L-TGGGGADVV 205 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCc-----CCHHHHHH--H-hcCCCCCEE
Confidence 578999999986 65666666543368999999988777765431110000000 00111111 1 112459999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+....- . ..+..+.+.|+++|.++...
T Consensus 206 i~~~~~-------~---~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 206 IDAVGG-------P---ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EECCCC-------H---HHHHHHHHhcccCCEEEEEc
Confidence 864221 0 34666778899999998754
No 309
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.23 E-value=2.8 Score=44.52 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=35.6
Q ss_pred EEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742 296 VLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE 336 (597)
Q Consensus 296 VLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~ 336 (597)
||||-||.|++..-+...|+.-+.++|+++..++.-+.++.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~ 41 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG 41 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC
Confidence 68999999999999998997667789999998888777654
No 310
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=79.69 E-value=3.3 Score=36.98 Aligned_cols=90 Identities=18% Similarity=0.090 Sum_probs=53.7
Q ss_pred CChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccC
Q psy17742 303 KGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFES 382 (597)
Q Consensus 303 tG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes 382 (597)
.|..+..+++....+|+++|.++.-++.+++.....-..... ..+...+...... ..+|+|+-.-.-
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~-----~~~~~~i~~~~~~--~~~d~vid~~g~------ 68 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSD-----DDFVEQIRELTGG--RGVDVVIDCVGS------ 68 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTT-----SSHHHHHHHHTTT--SSEEEEEESSSS------
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccc-----ccccccccccccc--ccceEEEEecCc------
Confidence 466666666543379999999999888887643111100000 0111112222222 369999775321
Q ss_pred HHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 383 VQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 383 ~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
...++....+|+|||.+++.-..
T Consensus 69 ----~~~~~~~~~~l~~~G~~v~vg~~ 91 (130)
T PF00107_consen 69 ----GDTLQEAIKLLRPGGRIVVVGVY 91 (130)
T ss_dssp ----HHHHHHHHHHEEEEEEEEEESST
T ss_pred ----HHHHHHHHHHhccCCEEEEEEcc
Confidence 25778888999999999886543
No 311
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=79.13 E-value=16 Score=38.67 Aligned_cols=107 Identities=20% Similarity=0.222 Sum_probs=76.1
Q ss_pred CCCEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCC-CCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDK-ALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~-~~sFDv 369 (597)
.++.||=+| -.-..++.++-.+ ..+|..+||.+..|..-.+-..+.+..+.. .|.-|+.+++|.. .++||+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie------~~~~Dlr~plpe~~~~kFDv 224 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIE------AFVFDLRNPLPEDLKRKFDV 224 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchh------heeehhcccChHHHHhhCCe
Confidence 467899998 3333334433333 568999999999999988888877766433 6677778888754 467999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCC---cEEEEEeCCh
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPG---GFFVGTVPDS 410 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPG---G~fIit~pn~ 410 (597)
++.-- .++...+..||..=-..||-- |+|-++...+
T Consensus 225 fiTDP-----peTi~alk~FlgRGI~tLkg~~~aGyfgiT~res 263 (354)
T COG1568 225 FITDP-----PETIKALKLFLGRGIATLKGEGCAGYFGITRRES 263 (354)
T ss_pred eecCc-----hhhHHHHHHHHhccHHHhcCCCccceEeeeeccc
Confidence 87642 234467778888777888765 8998887666
No 312
>KOG2651|consensus
Probab=78.91 E-value=4.5 Score=44.23 Aligned_cols=42 Identities=19% Similarity=0.088 Sum_probs=34.2
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKT 333 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~e 333 (597)
+-..|.|+|.|.|.++..+.-.....|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 346799999999999998775544599999999877776665
No 313
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=78.87 E-value=39 Score=40.18 Aligned_cols=175 Identities=14% Similarity=0.171 Sum_probs=99.8
Q ss_pred CCEEEEECCCC--ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccc----------cceeehhhhccC
Q psy17742 293 PIKVLDMGSGK--GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR----------RNVFSAELRSQY 360 (597)
Q Consensus 293 ~~rVLDLGCGt--G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~----------~d~F~~dl~e~l 360 (597)
-.+|-=||+|+ ++++..++..|+ .|+.+|++++.++.+.++....-......... ...+..++ ..+
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 390 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGF 390 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHh
Confidence 35788899997 345555777785 99999999999998887665432111000000 00011111 111
Q ss_pred CCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHhhhccCccCCceEEEEecCCC
Q psy17742 361 EDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYRRHQSASFGNDVYQVQCLFDT 438 (597)
Q Consensus 361 ~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~~~~~~~fgN~vy~I~F~~~~ 438 (597)
...|+|+- .++|+.+-...+++++-++++|+.+|.-.+..- ..+...+ .....+..++|-++.
T Consensus 391 ----~~aDlViE-----av~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~------~~p~r~ig~Hff~P~ 455 (714)
T TIGR02437 391 ----DNVDIVVE-----AVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKAL------KRPENFCGMHFFNPV 455 (714)
T ss_pred ----cCCCEEEE-----cCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhc------CCcccEEEEecCCCc
Confidence 23666654 346777888999999999999997665443322 3333222 223456666665531
Q ss_pred CCCCCCcccceeeecccccccccc-CCCHHHHHHHHHHcCCeEEEEEecHHHHHHHh
Q psy17742 439 SRPPPLFGAKYDFNLEGVVNCPEF-LVYFPLLERIAGEFGLKRILKENFRSFYLRKI 494 (597)
Q Consensus 439 ~d~~p~fG~~Y~F~L~d~Vn~pEY-lv~~e~L~~La~eaGfelV~~~~F~ef~~e~~ 494 (597)
...+ |-+.|..+.- --..+.+.++++..|...|....-.-|+.+..
T Consensus 456 -~~~~---------lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGfi~NRl 502 (714)
T TIGR02437 456 -HRMP---------LVEVIRGEKSSDETIATVVAYASKMGKTPIVVNDCPGFFVNRV 502 (714)
T ss_pred -ccCc---------eEeecCCCCCCHHHHHHHHHHHHHcCCEEEEeCCcccchHHHH
Confidence 1111 1111110000 01245567888999999998887777766544
No 314
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=77.92 E-value=41 Score=39.96 Aligned_cols=172 Identities=14% Similarity=0.186 Sum_probs=98.5
Q ss_pred CEEEEECCCC-C-hhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccc----------cceeehhhhccCC
Q psy17742 294 IKVLDMGSGK-G-GDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR----------RNVFSAELRSQYE 361 (597)
Q Consensus 294 ~rVLDLGCGt-G-~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~----------~d~F~~dl~e~l~ 361 (597)
.+|.=||+|+ | +.+..++..|+ .|+.+|++++.++.+..+....-......... ...+..++ ..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~- 390 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGF- 390 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHh-
Confidence 5789999998 3 45555777785 99999999999998887754432111000000 00111111 111
Q ss_pred CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHhhhccCccCCceEEEEecCCCC
Q psy17742 362 DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYRRHQSASFGNDVYQVQCLFDTS 439 (597)
Q Consensus 362 ~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~~~~~~~fgN~vy~I~F~~~~~ 439 (597)
...|+|+- .++|..+-...+++++-++++|+.+|.-.+..- ..+...+ .....+..++|-.+.
T Consensus 391 ---~~aDlViE-----av~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~------~~p~r~~g~Hff~P~- 455 (715)
T PRK11730 391 ---ERVDVVVE-----AVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKAL------KRPENFCGMHFFNPV- 455 (715)
T ss_pred ---cCCCEEEe-----cccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhc------CCCccEEEEecCCcc-
Confidence 23666654 346777888999999999999996664433322 3333222 223456666665531
Q ss_pred CCCCCcccceeeeccccccccccCC---CHHHHHHHHHHcCCeEEEEEecHHHHHHHh
Q psy17742 440 RPPPLFGAKYDFNLEGVVNCPEFLV---YFPLLERIAGEFGLKRILKENFRSFYLRKI 494 (597)
Q Consensus 440 d~~p~fG~~Y~F~L~d~Vn~pEYlv---~~e~L~~La~eaGfelV~~~~F~ef~~e~~ 494 (597)
...+ |-+.|. -.-. ..+.+.++++..|...|....-.-|+.+..
T Consensus 456 ~~~~---------lVEvv~--g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGfv~nRi 502 (715)
T PRK11730 456 HRMP---------LVEVIR--GEKTSDETIATVVAYASKMGKTPIVVNDCPGFFVNRV 502 (715)
T ss_pred cccc---------eEEeeC--CCCCCHHHHHHHHHHHHHhCCceEEecCcCchhHHHH
Confidence 0011 111111 0011 234667788999999998887777765443
No 315
>KOG1227|consensus
Probab=77.68 E-value=1.6 Score=46.27 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=44.2
Q ss_pred CCEEEEECCCCChhHH-HHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcc
Q psy17742 293 PIKVLDMGSGKGGDML-KWINGGVKHVVFADIASVSIEDCKTRYEELKRKEE 343 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~-~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~ 343 (597)
+..|.|+=+|.|.++. .+...|.+.|+++|.+|.+++..++.+..+....+
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r 246 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDR 246 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHH
Confidence 4679999999999999 67888999999999999999999988877655544
No 316
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=77.57 E-value=9.1 Score=40.58 Aligned_cols=90 Identities=10% Similarity=0.059 Sum_probs=54.4
Q ss_pred CCCEEEEECCCC-ChhHHHHHh--cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWIN--GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~--~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD 368 (597)
++.+||=+|||. |..+..+++ .|..+|+++|.++.-++.|++ +.. ....+ .+... ..+|
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~-------------~~~~~---~~~~~-~g~d 224 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE-------------TYLID---DIPED-LAVD 224 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc-------------eeehh---hhhhc-cCCc
Confidence 578999999875 334445554 345689999999887777754 111 00000 11111 1388
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
+|+-.-.- ......+....++|++||.+++.
T Consensus 225 ~viD~~G~-------~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 225 HAFECVGG-------RGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred EEEECCCC-------CccHHHHHHHHHhCcCCcEEEEE
Confidence 88754221 00134677788899999998764
No 317
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=77.27 E-value=4.3 Score=41.99 Aligned_cols=42 Identities=31% Similarity=0.371 Sum_probs=37.3
Q ss_pred EEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE 336 (597)
Q Consensus 295 rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~ 336 (597)
+|+||-||.|++..-+...|+..+.++|+++.+++.-+.++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~ 43 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP 43 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence 699999999999999999998789999999998888887776
No 318
>KOG2918|consensus
Probab=76.65 E-value=91 Score=33.56 Aligned_cols=33 Identities=9% Similarity=0.047 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc
Q psy17742 464 VYFPLLERIAGEFGLKRILKENFRSFYLRKIKE 496 (597)
Q Consensus 464 v~~e~L~~La~eaGfelV~~~~F~ef~~e~~~~ 496 (597)
-+.+..+.-+.++|++-|....+.++|+-..+.
T Consensus 256 ~s~Esq~~Rf~~~Gw~~v~a~Dm~ei~n~~lp~ 288 (335)
T KOG2918|consen 256 NSIESQRSRFLKAGWEYVIAVDMNEIYNFSLPE 288 (335)
T ss_pred ccHHHHHHHHHhcCCceeehhhHHHHHHhhCCH
Confidence 467788888999999999999999999866543
No 319
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=76.22 E-value=35 Score=40.47 Aligned_cols=174 Identities=19% Similarity=0.171 Sum_probs=97.3
Q ss_pred CCEEEEECCCC-C-hhHHHHH-hcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccc----------cceeehhhhcc
Q psy17742 293 PIKVLDMGSGK-G-GDMLKWI-NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR----------RNVFSAELRSQ 359 (597)
Q Consensus 293 ~~rVLDLGCGt-G-~~l~~la-~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~----------~d~F~~dl~e~ 359 (597)
-.+|.=||+|+ | +++..++ ..|+ .|+.+|++++.++.+..+....-......... ...+..++ ..
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~ 386 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RG 386 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HH
Confidence 46799999998 3 3455556 5575 99999999999999887665432111000000 00111111 11
Q ss_pred CCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHhhhccCccCCceEEEEecCC
Q psy17742 360 YEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYRRHQSASFGNDVYQVQCLFD 437 (597)
Q Consensus 360 l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~~~~~~~fgN~vy~I~F~~~ 437 (597)
+ ...|+|+- .++|..+-...+++++-++++|+.+|.-.+..- ..+...+. ....+..++|-.+
T Consensus 387 ~----~~aDlViE-----av~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~------~p~r~ig~Hff~P 451 (708)
T PRK11154 387 F----KHADVVIE-----AVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAA------RPEQVIGLHYFSP 451 (708)
T ss_pred h----ccCCEEee-----cccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcC------cccceEEEecCCc
Confidence 1 23566644 446777888999999999999997775444322 33333221 2344666666553
Q ss_pred CCCCCCCcccceeeeccccccccc-cCCCHHHHHHHHHHcCCeEEEEEecHHHHHHH
Q psy17742 438 TSRPPPLFGAKYDFNLEGVVNCPE-FLVYFPLLERIAGEFGLKRILKENFRSFYLRK 493 (597)
Q Consensus 438 ~~d~~p~fG~~Y~F~L~d~Vn~pE-Ylv~~e~L~~La~eaGfelV~~~~F~ef~~e~ 493 (597)
. ...+ |-+.|..+. ---..+.+.++++..|...+....-.-|+.+.
T Consensus 452 ~-~~~~---------lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nR 498 (708)
T PRK11154 452 V-EKMP---------LVEVIPHAKTSAETIATTVALAKKQGKTPIVVRDGAGFYVNR 498 (708)
T ss_pred c-ccCc---------eEEEECCCCCCHHHHHHHHHHHHHcCCceEEEeccCcHHHHH
Confidence 1 0011 111111000 00124567778899999988877766665544
No 320
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=76.17 E-value=74 Score=33.46 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=89.0
Q ss_pred CEEEEECCCC--ChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 294 IKVLDMGSGK--GGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 294 ~rVLDLGCGt--G~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
.+|+=+|.|- |.++..+...|. ..++|.|.+...++.+.+.-- .+... ...........|+|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv--------------~d~~~-~~~~~~~~~~aD~V 68 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGV--------------IDELT-VAGLAEAAAEADLV 68 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCc--------------ccccc-cchhhhhcccCCEE
Confidence 5688888885 445555666664 357999999887776654311 11100 00001112348999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccc-e
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAK-Y 449 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~-Y 449 (597)
+..=-+ .....+++++...|++|..+.=.+--...+...+.+. +++.+ .+--.. |.||.. +
T Consensus 69 ivavPi-------~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~----~~~~~-~~vg~H------PM~G~~~~ 130 (279)
T COG0287 69 IVAVPI-------EATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKY----LPGDV-RFVGGH------PMFGPEAD 130 (279)
T ss_pred EEeccH-------HHHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHh----ccCCC-eeEecC------CCCCCccc
Confidence 876444 5567899999999999987776666666666655543 22222 111111 334431 1
Q ss_pred eeecccc--ccccccCCC---HHHHHHHHHHcCCeEEEEE
Q psy17742 450 DFNLEGV--VNCPEFLVY---FPLLERIAGEFGLKRILKE 484 (597)
Q Consensus 450 ~F~L~d~--Vn~pEYlv~---~e~L~~La~eaGfelV~~~ 484 (597)
.-.+.+. |-+|.-... +..+.++++..|-+++...
T Consensus 131 ~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~ 170 (279)
T COG0287 131 AGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMD 170 (279)
T ss_pred ccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence 1111121 223333333 5678888999999988764
No 321
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=75.99 E-value=78 Score=33.89 Aligned_cols=173 Identities=15% Similarity=0.187 Sum_probs=96.0
Q ss_pred CEEEEECCCC--ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh----hhccCC---C--
Q psy17742 294 IKVLDMGSGK--GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE----LRSQYE---D-- 362 (597)
Q Consensus 294 ~rVLDLGCGt--G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d----l~e~l~---~-- 362 (597)
.+|-=||.|+ ++++..++..|+ .|+..|+++++++.++......-...... + .+..+ ....+. +
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~l~k~~~~---g-~l~~~~~~~~l~~i~~~~~~~ 78 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLEKLVEK---G-KLTEEEADAALARITPTTDLA 78 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHhc---C-CCChhhHHHHHhhccccCchh
Confidence 4577889887 345555666555 89999999999998887665441111000 0 11110 001111 0
Q ss_pred CCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHhhhccCccCCceEEEEecCCCCC
Q psy17742 363 KALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYRRHQSASFGNDVYQVQCLFDTSR 440 (597)
Q Consensus 363 ~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d 440 (597)
.-...|+|+ ..++|..+-..++++++-.+++|+..|--.|..- ..+...+. ....+.-++|-++.
T Consensus 79 ~l~~~DlVI-----EAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~------rper~iG~HFfNP~-- 145 (307)
T COG1250 79 ALKDADLVI-----EAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALK------RPERFIGLHFFNPV-- 145 (307)
T ss_pred HhccCCEEE-----EeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhC------CchhEEEEeccCCC--
Confidence 001255554 4456777888999999999999987765544322 33333321 22345556665531
Q ss_pred CCCCcccceeeeccccccccccCC---CHHHHHHHHHHcCCeEEEEEecHHHHHHHh
Q psy17742 441 PPPLFGAKYDFNLEGVVNCPEFLV---YFPLLERIAGEFGLKRILKENFRSFYLRKI 494 (597)
Q Consensus 441 ~~p~fG~~Y~F~L~d~Vn~pEYlv---~~e~L~~La~eaGfelV~~~~F~ef~~e~~ 494 (597)
+...|-+.|. -... ..+.+.+++++.|-..+.......|+.+..
T Consensus 146 --------~~m~LVEvI~--g~~T~~e~~~~~~~~~~~igK~~vv~~D~pGFi~NRi 192 (307)
T COG1250 146 --------PLMPLVEVIR--GEKTSDETVERVVEFAKKIGKTPVVVKDVPGFIVNRL 192 (307)
T ss_pred --------CcceeEEEec--CCCCCHHHHHHHHHHHHHcCCCCEeecCCCceehHhH
Confidence 1111212221 0011 235677888999966566677777776544
No 322
>KOG0822|consensus
Probab=75.97 E-value=8.3 Score=43.86 Aligned_cols=104 Identities=16% Similarity=0.260 Sum_probs=66.4
Q ss_pred CCEEEEECCCCChhHHHHHhc-----CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742 293 PIKVLDMGSGKGGDMLKWING-----GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL 367 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~-----g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF 367 (597)
...|+=+|.|.|-+....++. .--++++|+-+|.++-..+.+..... ..+.+ ++..|+. .+..+..+.
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-~~~Vt-----ii~~DMR-~w~ap~eq~ 440 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-DNRVT-----IISSDMR-KWNAPREQA 440 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-cCeeE-----EEecccc-ccCCchhhc
Confidence 457888999999877664332 12379999999999887776432222 22221 4555544 343333678
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG 405 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi 405 (597)
|++++-. | ..|.+.+--...|..+-+.|||.|+.|-
T Consensus 441 DI~VSEL-L-GSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 441 DIIVSEL-L-GSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred cchHHHh-h-ccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 9887631 1 1233334445788999999999998864
No 323
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=74.34 E-value=5.8 Score=38.68 Aligned_cols=164 Identities=17% Similarity=0.192 Sum_probs=83.8
Q ss_pred EEEECCCC-C-hhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccc----------cccceeehhhhccCCCC
Q psy17742 296 VLDMGSGK-G-GDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARP----------YRRNVFSAELRSQYEDK 363 (597)
Q Consensus 296 VLDLGCGt-G-~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~----------~~~d~F~~dl~e~l~~~ 363 (597)
|.=||+|+ | +++..++..|. +|+.+|.+++.++.++++....-....... .....+.. .+...
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~----dl~~~ 76 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTT----DLEEA 76 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEES----SGGGG
T ss_pred EEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccccc----CHHHH
Confidence 56688886 3 34455666775 999999999999999887665221110000 00001111 22222
Q ss_pred CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCC
Q psy17742 364 ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPP 443 (597)
Q Consensus 364 ~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p 443 (597)
. ..|+|+-. +.++.+-...+++++.+++.|+-.|.-.+..- .+...... .....++..++|-.+.
T Consensus 77 ~-~adlViEa-----i~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl-~i~~la~~---~~~p~R~ig~Hf~~P~----- 141 (180)
T PF02737_consen 77 V-DADLVIEA-----IPEDLELKQELFAELDEICPPDTILASNTSSL-SISELAAA---LSRPERFIGMHFFNPP----- 141 (180)
T ss_dssp C-TESEEEE------S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS--HHHHHTT---SSTGGGEEEEEE-SST-----
T ss_pred h-hhheehhh-----ccccHHHHHHHHHHHHHHhCCCceEEecCCCC-CHHHHHhc---cCcCceEEEEeccccc-----
Confidence 1 37777553 35677888999999999999987766554333 22222111 2234557777775531
Q ss_pred Ccccceeeeccccccccc-cCCCHHHHHHHHHHcCCeEEEEE
Q psy17742 444 LFGAKYDFNLEGVVNCPE-FLVYFPLLERIAGEFGLKRILKE 484 (597)
Q Consensus 444 ~fG~~Y~F~L~d~Vn~pE-Ylv~~e~L~~La~eaGfelV~~~ 484 (597)
.... +-+.+..+. ---..+.+.++++..|...+...
T Consensus 142 -~~~~----lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 142 -HLMP----LVEVVPGPKTSPETVDRVRALLRSLGKTPVVVK 178 (180)
T ss_dssp -TT------EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEEE
T ss_pred -ccCc----eEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 1110 111110000 00123567788899999888653
No 324
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=71.38 E-value=22 Score=40.32 Aligned_cols=115 Identities=12% Similarity=0.037 Sum_probs=63.9
Q ss_pred CCCEEEEECCCCChhHHHHHh---cC--CCEEEEEeCChHHHHHHHHHHHhhhhhcc-ccccccceeehhhhccCCCCCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWIN---GG--VKHVVFADIASVSIEDCKTRYEELKRKEE-ARPYRRNVFSAELRSQYEDKAL 365 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~---~g--~~~V~GIDiS~~mIe~A~er~~~~~~~~~-~~~~~~d~F~~dl~e~l~~~~~ 365 (597)
++..|.|..||+|+++..... .+ ...++|.+....+...|+.+..-.+.... .....++. +..+-.....
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dt----l~~~d~~~~~ 292 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADT----LTTKEWENEN 292 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCc----CCCccccccc
Confidence 456899999999999876432 11 24699999999999988876432221100 00000011 1110000123
Q ss_pred ceeEEEEccc---------------------hhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 366 ELDLVSCQFC---------------------IHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 366 sFDvVi~~~v---------------------Lh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+||+|+++-. +|.+......-..++..+..+|++||...+..++.
T Consensus 293 ~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~~~g 358 (501)
T TIGR00497 293 GFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVCFPG 358 (501)
T ss_pred cCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEecCC
Confidence 4777665431 11110111233578888899999999876665543
No 325
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=71.35 E-value=6.3 Score=40.31 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=34.0
Q ss_pred CCEEEEECCCCChhHHHHHhc---------CCCEEEEEeCChHHHHHHHHHHHh
Q psy17742 293 PIKVLDMGSGKGGDMLKWING---------GVKHVVFADIASVSIEDCKTRYEE 337 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~---------g~~~V~GIDiS~~mIe~A~er~~~ 337 (597)
+.+|+|+|.|+|.++..+++. ...+|+-||+|+.+.+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 479999999999988876542 124899999999998888887655
No 326
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=71.32 E-value=17 Score=37.97 Aligned_cols=94 Identities=20% Similarity=0.258 Sum_probs=56.0
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh--hhccCCCCCCce
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE--LRSQYEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d--l~e~l~~~~~sF 367 (597)
++.+||-.|||. |..+..+++. |...+++++.++...+.+++.. ... ++... ....+....+.+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g----~~~--------vi~~~~~~~~~~~~~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMG----ADE--------TVNLARDPLAAYAADKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcC----CCE--------EEcCCchhhhhhhccCCCc
Confidence 467899998875 5565555554 5447999999988877665421 110 11110 000111122348
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+|+..... ...++.+.+.|+++|.++...
T Consensus 233 d~vld~~g~----------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 233 DVVFEASGA----------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred cEEEECCCC----------HHHHHHHHHHHhcCCEEEEEe
Confidence 999764321 134677789999999998643
No 327
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=71.07 E-value=12 Score=39.04 Aligned_cols=85 Identities=12% Similarity=0.088 Sum_probs=52.2
Q ss_pred CCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 293 PIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 293 ~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
+.+||=+|||. |..+..+++. |...|+++|.++..++.|... . .+.. ... ....+|+|
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~-----------~i~~--~~~---~~~g~Dvv 204 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E-----------VLDP--EKD---PRRDYRAI 204 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c-----------ccCh--hhc---cCCCCCEE
Confidence 46788888874 5566666654 655678889988776665431 0 1111 000 11348988
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+-.-.- ...+..+.++|++||.+++.-
T Consensus 205 id~~G~----------~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 205 YDASGD----------PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EECCCC----------HHHHHHHHHhhhcCcEEEEEe
Confidence 765321 135677788999999998653
No 328
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=71.02 E-value=1.4e+02 Score=31.11 Aligned_cols=172 Identities=13% Similarity=0.142 Sum_probs=89.0
Q ss_pred CEEEEECCCC-Ch-hHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccc---------cc-cceeehhhhccCC
Q psy17742 294 IKVLDMGSGK-GG-DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARP---------YR-RNVFSAELRSQYE 361 (597)
Q Consensus 294 ~rVLDLGCGt-G~-~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~---------~~-~d~F~~dl~e~l~ 361 (597)
.+|-=||+|. |. .+..++..|. .|+++|.++..++.++++............ .. ...+..+. +.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~- 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EEL- 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHh-
Confidence 4688889995 43 4455666774 999999999999877766542211100000 00 00111111 111
Q ss_pred CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe--CChhHHHHHHhhhccCccCCceEEEEecCCCC
Q psy17742 362 DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV--PDSNQIMARYRRHQSASFGNDVYQVQCLFDTS 439 (597)
Q Consensus 362 ~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~--pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~ 439 (597)
...|+|+.. +.+..+....+++++...++|+..|+..+ .....+...+. ....+..++|...
T Consensus 82 ---~~aD~Viea-----v~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~------~~~r~~g~h~~~p-- 145 (295)
T PLN02545 82 ---RDADFIIEA-----IVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQ------RPQQVIGMHFMNP-- 145 (295)
T ss_pred ---CCCCEEEEc-----CccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcC------CCcceEEEeccCC--
Confidence 236887664 23445667788999999999987665322 22233332221 1234555665542
Q ss_pred CCCCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHH
Q psy17742 440 RPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYL 491 (597)
Q Consensus 440 d~~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~ 491 (597)
+..+.-...-... ... --..+.+..+++..|...+....-..|..
T Consensus 146 ---p~~~~lveiv~g~--~t~--~e~~~~~~~ll~~lG~~~~~~~d~~g~i~ 190 (295)
T PLN02545 146 ---PPIMKLVEIIRGA--DTS--DEVFDATKALAERFGKTVVCSQDYPGFIV 190 (295)
T ss_pred ---cccCceEEEeCCC--CCC--HHHHHHHHHHHHHcCCeeEEecCcccHHH
Confidence 1111111000000 000 01245688889999998887655445543
No 329
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=70.90 E-value=20 Score=37.82 Aligned_cols=89 Identities=12% Similarity=-0.094 Sum_probs=53.5
Q ss_pred CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+||=.|+|. |..+..+++.....|++++.++.-++.|++.-... .+.. .. . ..+.+|++
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~------------vi~~--~~-~--~~~~~d~~ 227 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS------------AGGA--YD-T--PPEPLDAA 227 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce------------eccc--cc-c--CcccceEE
Confidence 578999999764 33444455543347999999988777776532111 1111 00 0 11247876
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+..-.. . ..+....++|++||.+++.-
T Consensus 228 i~~~~~-------~---~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 228 ILFAPA-------G---GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred EECCCc-------H---HHHHHHHHhhCCCcEEEEEe
Confidence 543211 1 35777888999999997754
No 330
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=69.93 E-value=18 Score=38.50 Aligned_cols=98 Identities=15% Similarity=0.065 Sum_probs=54.3
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=+|||. |..+..+++. |...|+++|.++.-++.+++.-...-.... ...+...+.. +.. ...+|+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~-----~~~~~~~i~~-~~~-~~g~d~ 248 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSS-----GTDPVEAIRA-LTG-GFGADV 248 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCC-----CcCHHHHHHH-HhC-CCCCCE
Confidence 578899998764 4455555554 544699999999988888543111000000 0000000111 111 124898
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+-.-.- ...+....++|++||.+++.
T Consensus 249 vid~~g~----------~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 249 VIDAVGR----------PETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEECCCC----------HHHHHHHHHHhccCCEEEEE
Confidence 8754211 12456667899999999864
No 331
>KOG1098|consensus
Probab=69.55 E-value=4 Score=46.98 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=27.9
Q ss_pred CCCEEEEECCCCChhHHHHHhc-C-CCEEEEEeCChH
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-G-VKHVVFADIASV 326 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g-~~~V~GIDiS~~ 326 (597)
+...||||||..|+|+.-..+. + ..-|+|||+.|.
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 5678999999999999876653 2 257999999774
No 332
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=68.55 E-value=37 Score=32.93 Aligned_cols=97 Identities=13% Similarity=0.071 Sum_probs=50.5
Q ss_pred CEEEEECCCCChhHHHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhh--ccccccccceeehhhhccCC---CCCCce
Q psy17742 294 IKVLDMGSGKGGDMLKWINGG-VKHVVFADIASVSIEDCKTRYEELKRK--EEARPYRRNVFSAELRSQYE---DKALEL 367 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~--~~~~~~~~d~F~~dl~e~l~---~~~~sF 367 (597)
..|+-||||-=.....+.... ...++-+|.- ++++.-++.+...... .....+..++...++.+.+. .....-
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p-~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLP-EVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE-H-HHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCCH-HHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 389999999766665555532 3477777764 3555555555544322 11111112222222222222 112346
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHH
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNA 393 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i 393 (597)
-++++-.++.|+ +.+....+|+.+
T Consensus 159 tl~i~Egvl~Yl--~~~~~~~ll~~i 182 (183)
T PF04072_consen 159 TLFIAEGVLMYL--SPEQVDALLRAI 182 (183)
T ss_dssp EEEEEESSGGGS---HHHHHHHHHHH
T ss_pred eEEEEcchhhcC--CHHHHHHHHHHh
Confidence 688888899998 667788888765
No 333
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=67.54 E-value=31 Score=41.16 Aligned_cols=172 Identities=14% Similarity=0.145 Sum_probs=94.0
Q ss_pred CCEEEEECCCC--ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh---h-hhccCCC----
Q psy17742 293 PIKVLDMGSGK--GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA---E-LRSQYED---- 362 (597)
Q Consensus 293 ~~rVLDLGCGt--G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~---d-l~e~l~~---- 362 (597)
-.+|-=||+|+ ++++..++..|+ .|+.+|++++.++.+.++....-...... ..+.. + ....+..
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~----g~~~~~~~~~~~~~i~~~~~~ 409 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKR----KKITSLERDSILSNLTPTLDY 409 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHc----CCCCHHHHHHHHhCeEEeCCH
Confidence 35788999997 345555677775 99999999999999888765432211000 00100 0 0001100
Q ss_pred -CCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHhhhccCccCCceEEEEecCCCC
Q psy17742 363 -KALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYRRHQSASFGNDVYQVQCLFDTS 439 (597)
Q Consensus 363 -~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~~~~~~~fgN~vy~I~F~~~~~ 439 (597)
.-...|+| +..+||+.+-..++++++-++++|+.+|.-.+..- ..+...+. ....+..++|-++.
T Consensus 410 ~~~~~aDlV-----iEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~------~p~r~ig~Hff~P~- 477 (737)
T TIGR02441 410 SGFKNADMV-----IEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSS------RPEKVIGMHYFSPV- 477 (737)
T ss_pred HHhccCCee-----hhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcC------CccceEEEeccCCc-
Confidence 01125555 45557888889999999999999997776544332 33333222 23445566665531
Q ss_pred CCCCCcccceeeeccccccccccCC---CHHHHHHHHHHcCCeEEEEEecHHHHHH
Q psy17742 440 RPPPLFGAKYDFNLEGVVNCPEFLV---YFPLLERIAGEFGLKRILKENFRSFYLR 492 (597)
Q Consensus 440 d~~p~fG~~Y~F~L~d~Vn~pEYlv---~~e~L~~La~eaGfelV~~~~F~ef~~e 492 (597)
...+ |-+.|.. .-. .......+++..|...|....-.-|+.+
T Consensus 478 ~~m~---------LvEvv~g--~~Ts~~~~~~~~~~~~~lgk~pv~v~d~pGFi~N 522 (737)
T TIGR02441 478 DKMQ---------LLEIITH--DGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTT 522 (737)
T ss_pred ccCc---------eEEEeCC--CCCCHHHHHHHHHHHHHCCCeEEEECCcCCchHH
Confidence 0011 1111100 001 2234566677777777766655555443
No 334
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=67.26 E-value=49 Score=36.20 Aligned_cols=114 Identities=17% Similarity=0.197 Sum_probs=62.9
Q ss_pred CCCEEEEECCCCChhHHH----HHhc--C--CCEEEEEeC----ChHHHHHHHHHHHhhhhhccccccccceeehhh---
Q psy17742 292 SPIKVLDMGSGKGGDMLK----WING--G--VKHVVFADI----ASVSIEDCKTRYEELKRKEEARPYRRNVFSAEL--- 356 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~----la~~--g--~~~V~GIDi----S~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl--- 356 (597)
....|+|+|.|.|.-... ++.. | .-++|||+. +...++.+.+++..........+.+..++...+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 457899999999984433 3332 1 237999999 888888888876654333221111111111110
Q ss_pred -hccCCCCCCceeEEEEccchhhhccCH---H-HHHHHHHHHHHhccCCcEEEEE
Q psy17742 357 -RSQYEDKALELDLVSCQFCIHYSFESV---Q-QARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 357 -~e~l~~~~~sFDvVi~~~vLh~lFes~---~-d~~~~L~~i~rlLKPGG~fIit 406 (597)
...+....+..=+|-|.+.||++.... . ....+|+. .+.|+|.-++++.
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~-ir~L~P~vvv~~E 243 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRV-IRSLNPKVVVLVE 243 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHH-HHhcCCCEEEEEe
Confidence 111222223355666788899985221 1 23345554 4578998555443
No 335
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=67.18 E-value=14 Score=37.95 Aligned_cols=97 Identities=19% Similarity=0.102 Sum_probs=54.5
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=+|+|. |..+..+++. |...|+++|.++.-++.|++.-...-... . .....+. .+.. ...+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~------~-~~~~~~~-~~~~-~~g~d~ 190 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEP------E-VLAERQG-GLQN-GRGVDV 190 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCc------h-hhHHHHH-HHhC-CCCCCE
Confidence 567899998864 4444555544 55459999999887777765321100000 0 0000011 1111 124898
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+-.-.- ...+..+.++|+|||.++..-
T Consensus 191 vid~~G~----------~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 191 ALEFSGA----------TAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEECCCC----------hHHHHHHHHHhcCCCEEEEec
Confidence 8764211 235677788999999998643
No 336
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=66.67 E-value=1.2e+02 Score=36.15 Aligned_cols=174 Identities=20% Similarity=0.188 Sum_probs=95.8
Q ss_pred CEEEEECCCC-Ch-hHHHHH-hcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccc----------ccceeehhhhccC
Q psy17742 294 IKVLDMGSGK-GG-DMLKWI-NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPY----------RRNVFSAELRSQY 360 (597)
Q Consensus 294 ~rVLDLGCGt-G~-~l~~la-~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~----------~~d~F~~dl~e~l 360 (597)
.+|.=||+|+ |. ++..++ ..|+ .|+.+|++++.++.+..+....-........ ....+..++ +.+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~ 382 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGF 382 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHh
Confidence 5789999997 33 333345 3675 8999999999999887765432111000000 000111111 111
Q ss_pred CCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHhhhccCccCCceEEEEecCCC
Q psy17742 361 EDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYRRHQSASFGNDVYQVQCLFDT 438 (597)
Q Consensus 361 ~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~~~~~~~fgN~vy~I~F~~~~ 438 (597)
...|+|+- .++|+.+-...+++++-++++|+.+|.-.+..- ..+...+ .....+..++|-++.
T Consensus 383 ----~~adlViE-----av~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~------~~p~r~~g~HffnP~ 447 (699)
T TIGR02440 383 ----KDVDIVIE-----AVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAA------SRPENVIGLHYFSPV 447 (699)
T ss_pred ----ccCCEEEE-----eccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhc------CCcccEEEEecCCcc
Confidence 23666654 346777888999999999999996665443322 3333322 123456666665531
Q ss_pred CCCCCCcccceeeeccccccccc-cCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHh
Q psy17742 439 SRPPPLFGAKYDFNLEGVVNCPE-FLVYFPLLERIAGEFGLKRILKENFRSFYLRKI 494 (597)
Q Consensus 439 ~d~~p~fG~~Y~F~L~d~Vn~pE-Ylv~~e~L~~La~eaGfelV~~~~F~ef~~e~~ 494 (597)
...+ |-+.|.-+. ---..+.+.++++..|.+.|....-.-|+-+..
T Consensus 448 -~~~~---------lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v~d~pGfi~nRl 494 (699)
T TIGR02440 448 -EKMP---------LVEVIPHAGTSEQTIATTVALAKKQGKTPIVVADKAGFYVNRI 494 (699)
T ss_pred -ccCc---------eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEccccchHHHHH
Confidence 0001 111111000 001234567888999999998877777765443
No 337
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=66.18 E-value=24 Score=36.82 Aligned_cols=99 Identities=19% Similarity=0.140 Sum_probs=55.9
Q ss_pred CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+||-.|+|. |..+..+++.-..+++++..+++..+.+++.....-.... ...+...+....+. ..+|+|
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~-----~~~~~~~l~~~~~~--~~vd~v 231 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVG-----DEDVAARLRELTDG--EGADVV 231 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCc-----ccCHHHHHHHHhCC--CCCCEE
Confidence 567899998764 5566666655335899998888877777543210000000 00111112222222 348999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+....- ...+..+.+.|+++|.++...
T Consensus 232 ld~~g~----------~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 232 IDATGN----------PASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred EECCCC----------HHHHHHHHHHHhcCCEEEEEc
Confidence 765211 134677788999999988643
No 338
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.71 E-value=1.7e+02 Score=30.19 Aligned_cols=203 Identities=15% Similarity=0.130 Sum_probs=101.7
Q ss_pred EEEEECCCC--ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccc----------cccceeehhhhccCCC
Q psy17742 295 KVLDMGSGK--GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARP----------YRRNVFSAELRSQYED 362 (597)
Q Consensus 295 rVLDLGCGt--G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~----------~~~d~F~~dl~e~l~~ 362 (597)
+|-=||+|. +.++..++..|. .|+++|+++..++.++++....-....... ..+..+..+. ..+
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~-- 80 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDL-DDL-- 80 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHh--
Confidence 577789985 445555777775 899999999999877655433211000000 0000111111 111
Q ss_pred CCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCC
Q psy17742 363 KALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPP 442 (597)
Q Consensus 363 ~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~ 442 (597)
...|+|+..- .++..-...+++.+.+.++|+..+ .+..+.-.+. .+... ......+..++|..+.
T Consensus 81 --~~aDlVi~av-----~e~~~~k~~~~~~l~~~~~~~~il-~s~ts~~~~~-~la~~--~~~~~r~ig~h~~~P~---- 145 (282)
T PRK05808 81 --KDADLVIEAA-----TENMDLKKKIFAQLDEIAKPEAIL-ATNTSSLSIT-ELAAA--TKRPDKVIGMHFFNPV---- 145 (282)
T ss_pred --ccCCeeeecc-----cccHHHHHHHHHHHHhhCCCCcEE-EECCCCCCHH-HHHHh--hCCCcceEEeeccCCc----
Confidence 3478876641 233345568999999999998766 3433332222 22211 1122345666665421
Q ss_pred CCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccchHHHHHHhhhccCCcccCCCHHH
Q psy17742 443 PLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAE 522 (597)
Q Consensus 443 p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e~~~~~~~~~Ll~rM~~l~~~~~~g~Ls~~E 522 (597)
....... +....... --..+.+.++++..|...+....-..|+.+..--. -+.+-+..++ .|..++++
T Consensus 146 -~~~~~ve--v~~g~~t~--~e~~~~~~~l~~~lGk~pv~~~d~~g~i~~Ri~~~---~~~ea~~~~~----~gv~~~~d 213 (282)
T PRK05808 146 -PVMKLVE--IIRGLATS--DATHEAVEALAKKIGKTPVEVKNAPGFVVNRILIP---MINEAIFVLA----EGVATAED 213 (282)
T ss_pred -ccCccEE--EeCCCCCC--HHHHHHHHHHHHHcCCeeEEecCccChHHHHHHHH---HHHHHHHHHH----hCCCCHHH
Confidence 0000000 00000000 11245678889999999998765555554332110 1111222222 34567777
Q ss_pred HHHHHh
Q psy17742 523 WEAITL 528 (597)
Q Consensus 523 ~E~~~L 528 (597)
-+.+..
T Consensus 214 iD~~~~ 219 (282)
T PRK05808 214 IDEGMK 219 (282)
T ss_pred HHHHHH
Confidence 776664
No 339
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=65.18 E-value=19 Score=39.97 Aligned_cols=86 Identities=13% Similarity=0.184 Sum_probs=53.7
Q ss_pred CCCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+|+=+|||. |......++ .|. +|+.+|+++.-.+.|+.. +.. ... +.+.+ ..+|+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~----G~~---------~~~--~~e~v----~~aDV 260 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME----GYE---------VMT--MEEAV----KEGDI 260 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc----CCE---------Ecc--HHHHH----cCCCE
Confidence 678999999997 555555444 454 899999998877766542 111 111 11112 23799
Q ss_pred EEEccchhhhccCHHHHHHHHHH-HHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKN-AAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~-i~rlLKPGG~fIit~ 407 (597)
|+..-.- ..++.. ..+.+|+||+++..-
T Consensus 261 VI~atG~----------~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 261 FVTTTGN----------KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred EEECCCC----------HHHHHHHHHhcCCCCcEEEEeC
Confidence 8864211 123443 478999999997654
No 340
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=64.91 E-value=19 Score=37.68 Aligned_cols=98 Identities=19% Similarity=0.128 Sum_probs=53.0
Q ss_pred CCCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=+|+|. |..+..+++ .|...|+++|.++.-++.+++.-...-..... .. ...+.+ +.. ...+|+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~-----~~-~~~~~~-~~~-~~~~d~ 234 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQ-----DD-VQEIRE-LTS-GAGADV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc-----ch-HHHHHH-HhC-CCCCCE
Confidence 567888888763 334444554 45544999999998877775431110000000 00 000111 111 125899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+-.-.- ...+....++|++||.+++.-
T Consensus 235 vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 235 AIECSGN----------TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred EEECCCC----------HHHHHHHHHHhhcCCEEEEEc
Confidence 8754211 124566678899999998643
No 341
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=64.43 E-value=36 Score=35.25 Aligned_cols=91 Identities=15% Similarity=0.039 Sum_probs=55.5
Q ss_pred CCCEEEEECCC-CChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh---hhhccCCCCCCce
Q psy17742 292 SPIKVLDMGSG-KGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA---ELRSQYEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCG-tG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~---dl~e~l~~~~~sF 367 (597)
++.+||-+||| .|..+..+++.....|++++.++..++.+++.. ... .+.. ..... .. +.+
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g----~~~--------~~~~~~~~~~~~-~~--~~~ 226 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLG----ADE--------VVDSGAELDEQA-AA--GGA 226 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC----CcE--------EeccCCcchHHh-cc--CCC
Confidence 56789999987 566666666553348999999998887774421 110 1110 00111 11 348
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+|+....- ...+..+.+.|+++|.++...
T Consensus 227 d~vi~~~~~----------~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 227 DVILVTVVS----------GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred CEEEECCCc----------HHHHHHHHHhcccCCEEEEEC
Confidence 988764211 125677788999999998764
No 342
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=64.01 E-value=6.4 Score=44.82 Aligned_cols=109 Identities=18% Similarity=0.144 Sum_probs=59.6
Q ss_pred CCCEEEEECCCCC-hhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccc-c-----ccccceeehh----hhccC
Q psy17742 292 SPIKVLDMGSGKG-GDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEA-R-----PYRRNVFSAE----LRSQY 360 (597)
Q Consensus 292 ~~~rVLDLGCGtG-~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~-~-----~~~~d~F~~d----l~e~l 360 (597)
++.+||=+|||.= ..+..+++.-...|+++|.++..++.++.. ......... . .........+ ....+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 5689999999974 555555544224799999999987777652 111000000 0 0000000011 01112
Q ss_pred CCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742 361 EDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG 405 (597)
Q Consensus 361 ~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi 405 (597)
...-..+|+|+..-.+..- +.+.-+.+++.+.+|||+.++-
T Consensus 242 ~e~~~~~DIVI~TalipG~----~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGK----PAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHhCCCCEEEECcccCCC----CCCeeehHHHHhhCCCCCEEEE
Confidence 2212359999876544221 3334477888999999998764
No 343
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=63.75 E-value=18 Score=38.67 Aligned_cols=97 Identities=18% Similarity=0.071 Sum_probs=54.0
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=+|+|. |..+..+++. |...|+++|.++.-++.+++.-...-.... ...+...+.. +.. +.+|+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~-----~~~~~~~i~~-~~~--~g~d~ 262 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAG-----DPNAVEQVRE-LTG--GGVDY 262 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCC-----chhHHHHHHH-HhC--CCCCE
Confidence 567888899764 4455555554 544799999999988887653111000000 0000000111 111 24898
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+-.-.- ...+....++|++||.++..
T Consensus 263 vid~~G~----------~~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 263 AFEMAGS----------VPALETAYEITRRGGTTVTA 289 (371)
T ss_pred EEECCCC----------hHHHHHHHHHHhcCCEEEEE
Confidence 8764211 13466677889999998764
No 344
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.79 E-value=65 Score=33.43 Aligned_cols=173 Identities=17% Similarity=0.255 Sum_probs=87.8
Q ss_pred EEEEECCCC-C-hhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccc----------cceeehhhhccCCC
Q psy17742 295 KVLDMGSGK-G-GDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR----------RNVFSAELRSQYED 362 (597)
Q Consensus 295 rVLDLGCGt-G-~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~----------~d~F~~dl~e~l~~ 362 (597)
+|.=||+|. | ..+..++..|. .|+.+|.++..++.+.++.............. ...+..++.+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~-- 79 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV-- 79 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh--
Confidence 577889985 3 34455666775 89999999999998877543321110000000 001111111112
Q ss_pred CCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC--ChhHHHHHHhhhccCccCCceEEEEecCCCCC
Q psy17742 363 KALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP--DSNQIMARYRRHQSASFGNDVYQVQCLFDTSR 440 (597)
Q Consensus 363 ~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p--n~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d 440 (597)
...|+|+..- .+...-...++.++.+.++|+..++..+. ....+...+.. ...+..++|-.+
T Consensus 80 --~~aD~Vi~av-----pe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~------~~r~~g~h~~~P--- 143 (288)
T PRK09260 80 --ADADLVIEAV-----PEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKR------PERVIAMHFFNP--- 143 (288)
T ss_pred --cCCCEEEEec-----cCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCC------cccEEEEecCCC---
Confidence 2368887542 23334456778889999999876654332 33333332211 112333444321
Q ss_pred CCCCcccceeeeccccccccc-cCCCHHHHHHHHHHcCCeEEEEEecHHHHHHH
Q psy17742 441 PPPLFGAKYDFNLEGVVNCPE-FLVYFPLLERIAGEFGLKRILKENFRSFYLRK 493 (597)
Q Consensus 441 ~~p~fG~~Y~F~L~d~Vn~pE-Ylv~~e~L~~La~eaGfelV~~~~F~ef~~e~ 493 (597)
..+.. |-+.+..+. ---..+.+..+++..|-..+....-.-|+-+.
T Consensus 144 ---v~~~~----Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v~d~~Gf~~nR 190 (288)
T PRK09260 144 ---VHKMK----LVELIRGLETSDETVQVAKEVAEQMGKETVVVNEFPGFVTSR 190 (288)
T ss_pred ---cccCc----eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCcccHHHHH
Confidence 11111 111110000 00124567888999999988877655565433
No 345
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=62.61 E-value=23 Score=37.55 Aligned_cols=93 Identities=14% Similarity=0.054 Sum_probs=52.4
Q ss_pred CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeC---ChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCce
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADI---ASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDi---S~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sF 367 (597)
++.+||=+|+|. |..+..+++....+|++++. ++.-++.+++. +..... .-..+..+ ... .+.+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~----Ga~~v~------~~~~~~~~-~~~-~~~~ 239 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL----GATYVN------SSKTPVAE-VKL-VGEF 239 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc----CCEEec------CCccchhh-hhh-cCCC
Confidence 467899999874 44555555543348999987 56666666542 111000 00001111 111 1358
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+|+-.-.- ...+....++|++||.+++.
T Consensus 240 d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 240 DLIIEATGV----------PPLAFEALPALAPNGVVILF 268 (355)
T ss_pred CEEEECcCC----------HHHHHHHHHHccCCcEEEEE
Confidence 988765321 13567788899999998764
No 346
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=62.47 E-value=23 Score=37.05 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=62.8
Q ss_pred CEEEEECCCC--ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccc----------cceeehhhhccCC
Q psy17742 294 IKVLDMGSGK--GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR----------RNVFSAELRSQYE 361 (597)
Q Consensus 294 ~rVLDLGCGt--G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~----------~d~F~~dl~e~l~ 361 (597)
.+|-=||+|+ ++.+..++..|. .|+..|.+++.++.+.+++...-......... ...+..++ +.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~- 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDF- 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHh-
Confidence 4688889996 345555677775 99999999999999887765432111000000 00011111 112
Q ss_pred CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhc-cCCcEEEEEe
Q psy17742 362 DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECL-KPGGFFVGTV 407 (597)
Q Consensus 362 ~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlL-KPGG~fIit~ 407 (597)
...|+|+-. ++++.+-...++..+.+++ +||..|.-.+
T Consensus 83 ---~~~d~ViEa-----v~E~~~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 83 ---ADRQLVIEA-----VVEDEAVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred ---CCCCEEEEe-----cccCHHHHHHHHHHHHHhhCCCCcEEEECC
Confidence 236777654 3566677888999999998 7776665443
No 347
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=61.54 E-value=35 Score=39.93 Aligned_cols=51 Identities=8% Similarity=0.031 Sum_probs=31.2
Q ss_pred CceeEEEEcc-chhhhccCHHH-HHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhh
Q psy17742 365 LELDLVSCQF-CIHYSFESVQQ-ARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR 419 (597)
Q Consensus 365 ~sFDvVi~~~-vLh~lFes~~d-~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~ 419 (597)
..||+|+.-. +-..- .+- -..+|+.++++++|||.|.- ......+...|..
T Consensus 165 ~~~d~~~lD~FsP~~n---p~~W~~~~~~~l~~~~~~~~~~~t-~t~a~~vr~~l~~ 217 (662)
T PRK01747 165 ARADAWFLDGFAPAKN---PDMWSPNLFNALARLARPGATLAT-FTSAGFVRRGLQE 217 (662)
T ss_pred ccccEEEeCCCCCccC---hhhccHHHHHHHHHHhCCCCEEEE-eehHHHHHHHHHH
Confidence 3589887632 21110 111 15799999999999998863 3445556655554
No 348
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=60.57 E-value=29 Score=36.11 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=53.5
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||-.|+|. |..+..+++. |...+++++.++...+.+++.....-.... ...+...+....+. +.+|+
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~-----~~~~~~~i~~~~~~--~~~d~ 239 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPK-----NGDIVEQILELTGG--RGVDC 239 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCC-----cchHHHHHHHHcCC--CCCcE
Confidence 567888887753 5555555554 434789998888777666543100000000 00011111111121 35898
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+....- ...+..+.+.|+++|.++..
T Consensus 240 vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 240 VIEAVGF----------EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred EEEccCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 8754211 13567778899999998854
No 349
>KOG2352|consensus
Probab=59.50 E-value=31 Score=38.93 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=69.3
Q ss_pred CCCEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccc--eeehhhhccCCCCCCcee
Q psy17742 292 SPIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRN--VFSAELRSQYEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d--~F~~dl~e~l~~~~~sFD 368 (597)
.+..+|=+|-|.|.+...+.. .+...++++++.|.|++.|...+.-.... +....+.+ .|....... ......||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~-~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKS-QQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhc-cccccCCc
Confidence 456788888888887776543 34468999999999999999876433222 11001111 111111111 11334689
Q ss_pred EEEEcc---chhhh-c-cCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 369 LVSCQF---CIHYS-F-ESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 369 vVi~~~---vLh~l-F-es~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
++...- -.|-+ + ...--...+|..++..|.|.|.|++.....
T Consensus 373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 886521 02222 0 111124678999999999999999876544
No 350
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=57.75 E-value=56 Score=32.94 Aligned_cols=102 Identities=21% Similarity=0.209 Sum_probs=63.7
Q ss_pred CCCEEEEECCCCChhHHHHHh----cC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh-----hhccCC
Q psy17742 292 SPIKVLDMGSGKGGDMLKWIN----GG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE-----LRSQYE 361 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~----~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d-----l~e~l~ 361 (597)
++..|+++|.-.|+-+..++. .| ..+|+|+||+-..++-+..+.+.. . ++..+ +.+...
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i--~---------f~egss~dpai~eqi~ 137 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDI--L---------FIEGSSTDPAIAEQIR 137 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCe--E---------EEeCCCCCHHHHHHHH
Confidence 467899999999997776554 34 248999999977655443321111 0 22221 111110
Q ss_pred -CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 362 -DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 362 -~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
..++.--+.+|-.+-|++ +...+-|+-...+|.-|-++++.-.
T Consensus 138 ~~~~~y~kIfvilDsdHs~----~hvLAel~~~~pllsaG~Y~vVeDs 181 (237)
T COG3510 138 RLKNEYPKIFVILDSDHSM----EHVLAELKLLAPLLSAGDYLVVEDS 181 (237)
T ss_pred HHhcCCCcEEEEecCCchH----HHHHHHHHHhhhHhhcCceEEEecc
Confidence 011222455667778887 7778888999999999999988543
No 351
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=57.64 E-value=32 Score=36.15 Aligned_cols=98 Identities=16% Similarity=0.108 Sum_probs=54.2
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|+|. |..+..+++. |...++++|.++...+.+++. +...... .....+...+..... ...+|+
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~-~~~~~~~~~i~~~~~--~~~~d~ 238 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEY----GATDIVD-YKNGDVVEQILKLTG--GKGVDA 238 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCceEec-CCCCCHHHHHHHHhC--CCCCcE
Confidence 567888888763 4444445543 555799999998887777642 1110000 000001111111111 234899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+..-.- ...+..+.++|+++|.++..
T Consensus 239 vld~~g~----------~~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 239 VIIAGGG----------QDTFEQALKVLKPGGTISNV 265 (351)
T ss_pred EEECCCC----------HHHHHHHHHHhhcCCEEEEe
Confidence 8753211 13567888899999998753
No 352
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=57.06 E-value=82 Score=31.16 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=26.0
Q ss_pred CCCEEEEECCCC-ChhH-HHHHhcCCCEEEEEeCCh
Q psy17742 292 SPIKVLDMGSGK-GGDM-LKWINGGVKHVVFADIAS 325 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l-~~la~~g~~~V~GIDiS~ 325 (597)
...+||=+|||. |... ..++..|+.+++.+|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 357899999995 5544 447778888999999873
No 353
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=56.42 E-value=18 Score=39.81 Aligned_cols=44 Identities=11% Similarity=0.062 Sum_probs=38.9
Q ss_pred CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 364 ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 364 ~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
.+++|.++....+.|+ +.+.....++.+.+.++|||++++-...
T Consensus 293 ~~s~~~~vL~D~~Dwm--~~~~~~~~~~~l~~~~~pgaRV~~Rsa~ 336 (380)
T PF11899_consen 293 PGSFDRFVLSDHMDWM--DPEQLNEEWQELARTARPGARVLWRSAA 336 (380)
T ss_pred CCCeeEEEecchhhhC--CHHHHHHHHHHHHHHhCCCCEEEEeeCC
Confidence 4679999999999998 6688999999999999999999986543
No 354
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=55.96 E-value=63 Score=33.87 Aligned_cols=89 Identities=18% Similarity=0.135 Sum_probs=52.7
Q ss_pred CEEEEECCCC-Ch-hHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 294 IKVLDMGSGK-GG-DMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 294 ~rVLDLGCGt-G~-~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
.+|.=||+|. |. ++..+...|. ..|+++|.++..++.+++. +... ....+..+.+ ...|+|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~~~--------~~~~~~~~~~----~~aDvV 70 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GLGD--------RVTTSAAEAV----KGADLV 70 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CCCc--------eecCCHHHHh----cCCCEE
Confidence 5688899997 33 4444555563 4899999999877666532 1100 1111111112 237888
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG 405 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi 405 (597)
+..-.. .....+++.+...+++|+.++.
T Consensus 71 iiavp~-------~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 71 ILCVPV-------GASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred EECCCH-------HHHHHHHHHHHhhCCCCCEEEe
Confidence 775333 3345677788888999886543
No 355
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=55.86 E-value=58 Score=33.82 Aligned_cols=96 Identities=10% Similarity=-0.104 Sum_probs=55.0
Q ss_pred CCCEEEEECC--CCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccccc-ceeehhhhccCCCCCCcee
Q psy17742 292 SPIKVLDMGS--GKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRR-NVFSAELRSQYEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGC--GtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~-d~F~~dl~e~l~~~~~sFD 368 (597)
++.+||=.|. |.|..+..+++....++++++.++.-.+.+++. +...... ... ..+.. ....... +.+|
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~l----Ga~~vi~-~~~~~~~~~-~~~~~~~--~gvd 209 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKL----GFDVAFN-YKTVKSLEE-TLKKASP--DGYD 209 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCCEEEe-ccccccHHH-HHHHhCC--CCeE
Confidence 5788998884 356677777765435899999998877777542 1110000 000 01110 1111211 3599
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
+|+-... . ..+....++|++||.++..
T Consensus 210 vv~d~~G---------~--~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 210 CYFDNVG---------G--EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred EEEECCC---------H--HHHHHHHHHhCcCcEEEEe
Confidence 9876421 1 2346778899999999864
No 356
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=55.85 E-value=27 Score=36.20 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=54.4
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---h-hccCCCCCC
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---L-RSQYEDKAL 365 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---l-~e~l~~~~~ 365 (597)
++.+||-+|+|. |..+..+++. |...+++++.++...+.+++.... . .+... . ..... ..+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~----~--------~~~~~~~~~~~~~~~-~~~ 225 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGAT----E--------TVDPSREDPEAQKED-NPY 225 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCe----E--------EecCCCCCHHHHHHh-cCC
Confidence 567899998653 5555555554 443489999998887777543211 0 11100 0 00111 123
Q ss_pred ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
.+|+|+....- ...+..+.++|+++|.++...
T Consensus 226 ~vd~v~~~~~~----------~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 226 GFDVVIEATGV----------PKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred CCcEEEECCCC----------hHHHHHHHHHHhcCCEEEEEe
Confidence 58999864211 135677788999999997653
No 357
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=55.64 E-value=43 Score=35.21 Aligned_cols=97 Identities=19% Similarity=0.144 Sum_probs=52.2
Q ss_pred CCCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee-
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD- 368 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD- 368 (597)
++.+||=+|||. |..+..+++ .|...|+++|.++.-++.+++.-...-..... .. ...+...... ..+|
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~-----~~-~~~~~~~~~~--~~~d~ 231 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE-----MS-APQIQSVLRE--LRFDQ 231 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc-----cC-HHHHHHHhcC--CCCCe
Confidence 567899888865 444444554 35545899999998877765421110000000 00 0011111111 2477
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
+|+-.-.- ...+....++|++||.+++.
T Consensus 232 ~v~d~~G~----------~~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 232 LILETAGV----------PQTVELAIEIAGPRAQLALV 259 (347)
T ss_pred EEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 65442111 23567778899999998865
No 358
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=55.40 E-value=28 Score=38.24 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=33.2
Q ss_pred CCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHH
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRY 335 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~ 335 (597)
+++.+||-|++| |..+..++..+.++|++||+|+..+...+=+.
T Consensus 34 ~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 34 GPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 378899999766 55555556566689999999999887665443
No 359
>PRK11524 putative methyltransferase; Provisional
Probab=54.98 E-value=18 Score=37.67 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 386 ARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 386 ~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
+..+|.++.++|||||.|++....
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCc
Confidence 467899999999999999986443
No 360
>PRK10083 putative oxidoreductase; Provisional
Probab=53.67 E-value=40 Score=35.05 Aligned_cols=96 Identities=20% Similarity=0.200 Sum_probs=53.2
Q ss_pred CCCEEEEECCCC-ChhHHHHHh-c-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWIN-G-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~-~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD 368 (597)
++.+||=.|+|. |..+..+++ . |...++++|.++...+.+++.-...-.. .-..++.+.+......+|
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~---------~~~~~~~~~~~~~g~~~d 230 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVIN---------NAQEPLGEALEEKGIKPT 230 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEec---------CccccHHHHHhcCCCCCC
Confidence 567888899653 334445555 3 7667999999988877776532110000 000011111211112256
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
+|+....- ...+....++|+++|.++..
T Consensus 231 ~vid~~g~----------~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 231 LIIDAACH----------PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred EEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence 77653210 13567778899999999864
No 361
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=53.53 E-value=99 Score=31.98 Aligned_cols=84 Identities=21% Similarity=0.083 Sum_probs=51.4
Q ss_pred EEEEECCCC--ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742 295 KVLDMGSGK--GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC 372 (597)
Q Consensus 295 rVLDLGCGt--G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~ 372 (597)
+|.=||+|. |.++..+...|. +|+++|.++..++.+.+.. ... ....+. +.+ ...|+|+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g----~~~--------~~~~~~-~~~----~~aDlVil 63 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERG----LVD--------EASTDL-SLL----KDCDLVIL 63 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCC----Ccc--------cccCCH-hHh----cCCCEEEE
Confidence 466688885 345555666774 8999999998877775431 100 111111 111 24788877
Q ss_pred ccchhhhccCHHHHHHHHHHHHHhccCCcEE
Q psy17742 373 QFCIHYSFESVQQARCMLKNAAECLKPGGFF 403 (597)
Q Consensus 373 ~~vLh~lFes~~d~~~~L~~i~rlLKPGG~f 403 (597)
.-.. .....+++++...++++.++
T Consensus 64 avp~-------~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 64 ALPI-------GLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred cCCH-------HHHHHHHHHHHHhCCCCcEE
Confidence 6433 44566788888888887544
No 362
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=52.76 E-value=32 Score=36.76 Aligned_cols=90 Identities=14% Similarity=0.059 Sum_probs=49.9
Q ss_pred CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh----hhhccCCCCCCc
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA----ELRSQYEDKALE 366 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~----dl~e~l~~~~~s 366 (597)
++.+||=.|+|. |..+..+++....++++++.+......+.+. .+... .+.. .+.. +. +.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~---~Ga~~--------vi~~~~~~~~~~-~~---~~ 247 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINR---LGADS--------FLVSTDPEKMKA-AI---GT 247 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHh---CCCcE--------EEcCCCHHHHHh-hc---CC
Confidence 567888899874 4455555554334788888876543332222 11110 1110 1111 11 23
Q ss_pred eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
+|+|+-...- ...+..+.++|++||.++..
T Consensus 248 ~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 248 MDYIIDTVSA----------VHALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCEEEECCCC----------HHHHHHHHHHhcCCcEEEEe
Confidence 8888754221 13567778899999998864
No 363
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=51.82 E-value=71 Score=33.97 Aligned_cols=98 Identities=16% Similarity=-0.016 Sum_probs=56.1
Q ss_pred CCCEEEEECC-C-CChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGS-G-KGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGC-G-tG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|+ | .|..+..+++....+|++++.++.-.+.+++.+......... ....+...+.. +.. +.+|+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~---~~~~~~~~i~~-~~~--~gvD~ 231 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYK---EEPDLDAALKR-YFP--EGIDI 231 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECC---CcccHHHHHHH-HCC--CCcEE
Confidence 5789999998 3 566777777654358999999988777665332211000000 00001111111 111 24898
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+..-. . ..+..+.++|++||.++..
T Consensus 232 v~d~vG---------~--~~~~~~~~~l~~~G~iv~~ 257 (348)
T PLN03154 232 YFDNVG---------G--DMLDAALLNMKIHGRIAVC 257 (348)
T ss_pred EEECCC---------H--HHHHHHHHHhccCCEEEEE
Confidence 876421 1 3567788899999999864
No 364
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=51.56 E-value=46 Score=35.20 Aligned_cols=42 Identities=29% Similarity=0.271 Sum_probs=31.4
Q ss_pred CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHH
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKT 333 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~e 333 (597)
++.+||=+|||. |..+..+++....+++++|.++..++.+++
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 578999999965 556566655433479999999998887765
No 365
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=51.24 E-value=1.2e+02 Score=30.34 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=25.6
Q ss_pred CCCEEEEECCCC-Chh-HHHHHhcCCCEEEEEeCC
Q psy17742 292 SPIKVLDMGSGK-GGD-MLKWINGGVKHVVFADIA 324 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~-l~~la~~g~~~V~GIDiS 324 (597)
...+|+=+|||. |.. +..++..|+.+++.+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 357899999994 554 444777888899999987
No 366
>PLN02740 Alcohol dehydrogenase-like
Probab=51.18 E-value=37 Score=36.52 Aligned_cols=99 Identities=16% Similarity=0.058 Sum_probs=53.6
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=+|||. |..+..+++. |...|+++|.++.-++.+++.-...-..... ....+...+. .+.. +.+|+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~---~~~~~~~~v~-~~~~--~g~dv 271 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKD---SDKPVHERIR-EMTG--GGVDY 271 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEeccc---ccchHHHHHH-HHhC--CCCCE
Confidence 578999999864 4444555554 5447999999998888886521110000000 0000100011 1211 24899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCC-cEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPG-GFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPG-G~fIit 406 (597)
|+-.-.- ...+.....++++| |.+++.
T Consensus 272 vid~~G~----------~~~~~~a~~~~~~g~G~~v~~ 299 (381)
T PLN02740 272 SFECAGN----------VEVLREAFLSTHDGWGLTVLL 299 (381)
T ss_pred EEECCCC----------hHHHHHHHHhhhcCCCEEEEE
Confidence 8764321 13566667788886 887653
No 367
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=51.07 E-value=41 Score=35.06 Aligned_cols=98 Identities=20% Similarity=0.253 Sum_probs=53.8
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||-.|+|. |..+..+++. |...+++++-++...+.+++. +...... ..... ...+..... ...+|+
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~----g~~~~~~-~~~~~-~~~~~~~~~--~~~~d~ 230 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVAREL----GADDTIN-PKEED-VEKVRELTE--GRGADL 230 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----CCCEEec-Ccccc-HHHHHHHhC--CCCCCE
Confidence 567899998765 5555555554 543499999888877766432 1110000 00000 011111121 124899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+..-. ....+..+.++|+++|.++...
T Consensus 231 vld~~g----------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 231 VIEAAG----------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EEECCC----------CHHHHHHHHHHhhcCCEEEEEc
Confidence 976411 0235677788999999987653
No 368
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=50.87 E-value=81 Score=32.39 Aligned_cols=144 Identities=19% Similarity=0.174 Sum_probs=73.0
Q ss_pred HHHHhcC-CCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccchhhhccCHHHH
Q psy17742 308 LKWINGG-VKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQA 386 (597)
Q Consensus 308 ~~la~~g-~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vLh~lFes~~d~ 386 (597)
..+.+.| ..+|+|+|.++..++.|.+. +... ....+ .+.+ ..+|+|+..-.+ ...
T Consensus 3 ~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~~--------~~~~~-~~~~----~~~DlvvlavP~-------~~~ 58 (258)
T PF02153_consen 3 LALRKAGPDVEVYGYDRDPETLEAALEL----GIID--------EASTD-IEAV----EDADLVVLAVPV-------SAI 58 (258)
T ss_dssp HHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSSS--------EEESH-HHHG----GCCSEEEE-S-H-------HHH
T ss_pred HHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCee--------eccCC-HhHh----cCCCEEEEcCCH-------HHH
Confidence 4455555 35999999999998888653 1110 11111 1122 237998876444 667
Q ss_pred HHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEE--ecCCCC----CCCCCc-ccceeeeccccccc
Q psy17742 387 RCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQ--CLFDTS----RPPPLF-GAKYDFNLEGVVNC 459 (597)
Q Consensus 387 ~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~--F~~~~~----d~~p~f-G~~Y~F~L~d~Vn~ 459 (597)
..+++++...|++|+.+.=...-...+...+.+... -+..+...+ |+.+.. .....| |..|-+ |
T Consensus 59 ~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~--~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il-------~ 129 (258)
T PF02153_consen 59 EDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLP--EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWIL-------C 129 (258)
T ss_dssp HHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHT--SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEE-------E
T ss_pred HHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcC--cccceeecCCCCCCccccchhhcccccCCCeEEE-------e
Confidence 889999999999998776665555666665554321 112222222 222100 011222 222221 1
Q ss_pred cccCC---CHHHHHHHHHHcCCeEEEEE
Q psy17742 460 PEFLV---YFPLLERIAGEFGLKRILKE 484 (597)
Q Consensus 460 pEYlv---~~e~L~~La~eaGfelV~~~ 484 (597)
|.--. ....++++++..|.+++...
T Consensus 130 p~~~~~~~~~~~~~~l~~~~Ga~~~~~~ 157 (258)
T PF02153_consen 130 PGEDTDPEALELVEELWEALGARVVEMD 157 (258)
T ss_dssp ECTTS-HHHHHHHHHHHHHCT-EEEE--
T ss_pred CCCCChHHHHHHHHHHHHHCCCEEEEcC
Confidence 11111 23568899999999988753
No 369
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=50.81 E-value=58 Score=30.70 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=55.2
Q ss_pred EEEEECCCCChhHHH--HHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742 295 KVLDMGSGKGGDMLK--WINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC 372 (597)
Q Consensus 295 rVLDLGCGtG~~l~~--la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~ 372 (597)
+|.=||+|.++.+.. ++..| .+|+....+++.++..++..................+..|+.+.+. ..|+|+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~----~ad~Iii 75 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE----DADIIII 75 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT----T-SEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC----cccEEEe
Confidence 366689998876654 55566 5999999999887776654321110000000001122333333332 2688766
Q ss_pred ccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 373 ~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
.-.- ...+.+++++...|+++-.+++.
T Consensus 76 avPs-------~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 76 AVPS-------QAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp -S-G-------GGHHHHHHHHTTTSHTT-EEEET
T ss_pred cccH-------HHHHHHHHHHhhccCCCCEEEEe
Confidence 4222 23467899999999877666654
No 370
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=50.41 E-value=27 Score=37.25 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=39.1
Q ss_pred CCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE 337 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~ 337 (597)
..+++||-||.|++..-+...|+.-+.++|+++..++.-+.++..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~ 47 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH 47 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC
Confidence 467999999999999999999987888999999988887777653
No 371
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=50.38 E-value=57 Score=33.51 Aligned_cols=48 Identities=23% Similarity=0.137 Sum_probs=42.1
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhh
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKR 340 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~ 340 (597)
++..|||-=+|+|..+......+ ..++|+|+++..++.+.+|......
T Consensus 222 ~~diVlDpf~GsGtt~~aa~~~~-r~~ig~e~~~~y~~~~~~r~~~~~~ 269 (302)
T COG0863 222 PGDIVLDPFAGSGTTGIAAKNLG-RRFIGIEINPEYVEVALKRLQEGLN 269 (302)
T ss_pred CCCEEeecCCCCChHHHHHHHcC-CceEEEecCHHHHHHHHHHHHhhcc
Confidence 68999999999999998877777 5899999999999999999876543
No 372
>PRK10458 DNA cytosine methylase; Provisional
Probab=50.11 E-value=30 Score=39.06 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=37.0
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRY 335 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~ 335 (597)
...+++||-||.|++..-+...|+..|.++|+++.+.+.-+.++
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 35799999999999999998888877889999998777666554
No 373
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=49.47 E-value=3.2e+02 Score=28.30 Aligned_cols=173 Identities=14% Similarity=0.126 Sum_probs=89.9
Q ss_pred CEEEEECCCC-Ch-hHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhh--hhc--ccccc---------ccceeehhhhc
Q psy17742 294 IKVLDMGSGK-GG-DMLKWINGGVKHVVFADIASVSIEDCKTRYEELK--RKE--EARPY---------RRNVFSAELRS 358 (597)
Q Consensus 294 ~rVLDLGCGt-G~-~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~--~~~--~~~~~---------~~d~F~~dl~e 358 (597)
.+|.=||+|. |. .+..++..|. .|+.+|.++..++.++++..... ... ..... ....+..+. .
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-E 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-H
Confidence 3588889995 43 4555667775 89999999999988776544310 000 00000 000111111 1
Q ss_pred cCCCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCC
Q psy17742 359 QYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDT 438 (597)
Q Consensus 359 ~l~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~ 438 (597)
.+ ...|+|+..- ++..+....+++++.+.++|+..| ++....-.+.. +... ......+..++|-.+.
T Consensus 82 ~~----~~aDlVieav-----~e~~~~k~~~~~~l~~~~~~~~il-~S~tsg~~~~~-la~~--~~~~~r~ig~hf~~P~ 148 (291)
T PRK06035 82 SL----SDADFIVEAV-----PEKLDLKRKVFAELERNVSPETII-ASNTSGIMIAE-IATA--LERKDRFIGMHWFNPA 148 (291)
T ss_pred Hh----CCCCEEEEcC-----cCcHHHHHHHHHHHHhhCCCCeEE-EEcCCCCCHHH-HHhh--cCCcccEEEEecCCCc
Confidence 11 2368887642 233345678899999999888755 44444322222 2111 0112335556654421
Q ss_pred CCCCCCcccceeeeccccccccccCCC---HHHHHHHHHHcCCeEEEEEecHHHHHHH
Q psy17742 439 SRPPPLFGAKYDFNLEGVVNCPEFLVY---FPLLERIAGEFGLKRILKENFRSFYLRK 493 (597)
Q Consensus 439 ~d~~p~fG~~Y~F~L~d~Vn~pEYlv~---~e~L~~La~eaGfelV~~~~F~ef~~e~ 493 (597)
. ..+ +-+.+ +--..+ .+.+..+++..|...+....-..|....
T Consensus 149 ~-~~~---------~vEv~--~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nR 194 (291)
T PRK06035 149 P-VMK---------LIEVV--RAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTTR 194 (291)
T ss_pred c-cCc---------cEEEe--CCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHH
Confidence 0 000 00111 111122 3456778899999999887655554433
No 374
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=49.44 E-value=92 Score=27.81 Aligned_cols=76 Identities=18% Similarity=0.100 Sum_probs=51.9
Q ss_pred hhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcccceeeeccc
Q psy17742 376 IHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEG 455 (597)
Q Consensus 376 Lh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG~~Y~F~L~d 455 (597)
+||- .++..++|..+....+ |.+|+|+.-...++..+...+ . -|+.. +..
T Consensus 6 IHYp---~~d~~~~l~~La~~t~--~~~ifTfAP~T~~L~~m~~iG-----~-----lFP~~--dRs------------- 55 (97)
T PF07109_consen 6 IHYP---AEDAAQMLAHLASRTR--GSLIFTFAPRTPLLALMHAIG-----K-----LFPRP--DRS------------- 55 (97)
T ss_pred eccC---HHHHHHHHHHHHHhcc--CcEEEEECCCCHHHHHHHHHh-----c-----cCCCC--CCC-------------
Confidence 6773 5788899998887754 789999877776666554421 1 12221 111
Q ss_pred cccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742 456 VVNCPEFLVYFPLLERIAGEFGLKRILKE 484 (597)
Q Consensus 456 ~Vn~pEYlv~~e~L~~La~eaGfelV~~~ 484 (597)
..-|++..+.+.+.++++|+++....
T Consensus 56 ---p~i~~~~e~~l~~~l~~~g~~~~r~~ 81 (97)
T PF07109_consen 56 ---PRIYPHREEDLRRALAAAGWRIGRTE 81 (97)
T ss_pred ---CcEEEeCHHHHHHHHHhCCCeeeecc
Confidence 12357888999999999999998765
No 375
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=49.35 E-value=1.5e+02 Score=25.78 Aligned_cols=95 Identities=17% Similarity=0.074 Sum_probs=54.0
Q ss_pred CCCChhHHH----HHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccch
Q psy17742 301 SGKGGDMLK----WINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCI 376 (597)
Q Consensus 301 CGtG~~l~~----la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~vL 376 (597)
||.|..+.. +.. +...|+.+|.++..++.+++..-. .+.++....+..+.... .+.|.|++...
T Consensus 4 ~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~~~~~--------~i~gd~~~~~~l~~a~i--~~a~~vv~~~~- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELREEGVE--------VIYGDATDPEVLERAGI--EKADAVVILTD- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHTTSE--------EEES-TTSHHHHHHTTG--GCESEEEEESS-
T ss_pred EcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHhcccc--------cccccchhhhHHhhcCc--cccCEEEEccC-
Confidence 444454444 333 435899999999998888765311 11122222223333333 24888777532
Q ss_pred hhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHH
Q psy17742 377 HYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413 (597)
Q Consensus 377 h~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i 413 (597)
.+.....+-...+.+.|...++....+....
T Consensus 72 ------~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~ 102 (116)
T PF02254_consen 72 ------DDEENLLIALLARELNPDIRIIARVNDPENA 102 (116)
T ss_dssp ------SHHHHHHHHHHHHHHTTTSEEEEEESSHHHH
T ss_pred ------CHHHHHHHHHHHHHHCCCCeEEEEECCHHHH
Confidence 1333345555667788889999888877543
No 376
>KOG3924|consensus
Probab=49.03 E-value=49 Score=36.57 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=64.7
Q ss_pred CCCCEEEEECCCCChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhc-------cc-cccccceeehhhhccCC
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKE-------EA-RPYRRNVFSAELRSQYE 361 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~-------~~-~~~~~d~F~~dl~e~l~ 361 (597)
+++..-.|+|.|-|......+. .+...-+|+++....-+.|........... .. ..+.+.+...+....+.
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~ 270 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQ 270 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHHh
Confidence 4778899999999998887554 345567899888776665554433322111 00 01112222222222222
Q ss_pred CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 362 DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 362 ~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
...++|+++.+. |. +++..=+.++..-+++|-++|-+-
T Consensus 271 ---~eatvi~vNN~~---Fd--p~L~lr~~eil~~ck~gtrIiS~~ 308 (419)
T KOG3924|consen 271 ---TEATVIFVNNVA---FD--PELKLRSKEILQKCKDGTRIISSK 308 (419)
T ss_pred ---hcceEEEEeccc---CC--HHHHHhhHHHHhhCCCcceEeccc
Confidence 237888888765 33 333334458888999999987654
No 377
>PLN02827 Alcohol dehydrogenase-like
Probab=48.80 E-value=42 Score=36.19 Aligned_cols=98 Identities=16% Similarity=0.121 Sum_probs=52.8
Q ss_pred CCCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccccc-ceeehhhhccCCCCCCcee
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRR-NVFSAELRSQYEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~-d~F~~dl~e~l~~~~~sFD 368 (597)
++.+||=+|+|. |..+..+++ .|...|+++|.++.-.+.|++. +.......... ..+...+. .+.. +.+|
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga~~~i~~~~~~~~~~~~v~-~~~~--~g~d 265 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GVTDFINPNDLSEPIQQVIK-RMTG--GGAD 265 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCcEEEcccccchHHHHHHH-HHhC--CCCC
Confidence 578899998764 444444554 4555699999999877777542 11100000000 00000011 1111 2489
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCC-cEEEEE
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPG-GFFVGT 406 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPG-G~fIit 406 (597)
+|+-.-.- ...+....++|++| |.+++.
T Consensus 266 ~vid~~G~----------~~~~~~~l~~l~~g~G~iv~~ 294 (378)
T PLN02827 266 YSFECVGD----------TGIATTALQSCSDGWGLTVTL 294 (378)
T ss_pred EEEECCCC----------hHHHHHHHHhhccCCCEEEEE
Confidence 88764221 12456677788998 999753
No 378
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=48.21 E-value=70 Score=32.89 Aligned_cols=96 Identities=8% Similarity=-0.145 Sum_probs=54.8
Q ss_pred CCCEEEEECC--CCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGS--GKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGC--GtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|. |.|..+..+++....+|++++.+++-.+.+++. .-....... ...+...+. .+.. +.+|+
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~-Ga~~vi~~~----~~~~~~~v~-~~~~--~gvd~ 214 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL-GFDAVFNYK----TVSLEEALK-EAAP--DGIDC 214 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCCEEEeCC----CccHHHHHH-HHCC--CCcEE
Confidence 5678888874 346666666665434899999998877777652 110000000 000111111 1222 35898
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+.... . ..+....++|+++|.++..
T Consensus 215 vld~~g---------~--~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 215 YFDNVG---------G--EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred EEECCC---------H--HHHHHHHHhhccCCEEEEE
Confidence 875321 1 3467788899999999764
No 379
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=48.16 E-value=67 Score=32.29 Aligned_cols=92 Identities=18% Similarity=0.064 Sum_probs=53.8
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|||. |..+..+++. |..+|++++.+++..+.+++.- .... .+... .... ....+|+
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g----~~~~-------~~~~~-~~~~--~~~~~d~ 162 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALG----PADP-------VAADT-ADEI--GGRGADV 162 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcC----CCcc-------ccccc-hhhh--cCCCCCE
Confidence 578888888865 5555555554 5433999999998877666531 0000 11110 0011 1234898
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+..-.. ...+....+.|+++|.++...
T Consensus 163 vl~~~~~----------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 163 VIEASGS----------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred EEEccCC----------hHHHHHHHHHhcCCcEEEEEe
Confidence 8753111 125667788899999997643
No 380
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=46.61 E-value=90 Score=32.79 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=53.5
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|+|. |..+..+++. |...|++++.++...+.+++. +...... .....+...+.+... .+.+|+
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~-~~~~~~~~~l~~~~~--~~~~d~ 244 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLD-PTEVDVVAEVRKLTG--GGGVDV 244 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEC-CCccCHHHHHHHHhC--CCCCCE
Confidence 567888888652 3344444544 544899999998887777542 1110000 000001111111111 124899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+-.-.- ...+..+.++|++||.++..-
T Consensus 245 vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 272 (351)
T cd08233 245 SFDCAGV----------QATLDTAIDALRPRGTAVNVA 272 (351)
T ss_pred EEECCCC----------HHHHHHHHHhccCCCEEEEEc
Confidence 9764221 125677788999999987643
No 381
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=46.32 E-value=87 Score=32.77 Aligned_cols=99 Identities=20% Similarity=0.161 Sum_probs=54.5
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccce---eehhhhccCCCCCCc
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNV---FSAELRSQYEDKALE 366 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~---F~~dl~e~l~~~~~s 366 (597)
++.+||=.|+|. |..+..+++. |...|++++.++...+.+++. +...... ..... |...+..... ...
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~-~~~~~~~~~~~~~~~~~~--~~~ 234 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GATHTVN-VRTEDTPESAEKIAELLG--GKG 234 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCcEEec-cccccchhHHHHHHHHhC--CCC
Confidence 567888888764 4555555554 543489998888877766442 1110000 00001 0111222222 234
Q ss_pred eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+|+|+-...- ...+....++|+++|.++...
T Consensus 235 ~d~vld~~g~----------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 235 PDVVIECTGA----------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCEEEECCCC----------HHHHHHHHHHhhcCCEEEEEc
Confidence 9999764221 125677788999999988653
No 382
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=46.15 E-value=82 Score=32.85 Aligned_cols=96 Identities=9% Similarity=-0.087 Sum_probs=54.2
Q ss_pred CCEEEEECC--CCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 293 PIKVLDMGS--GKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 293 ~~rVLDLGC--GtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
+.+||=.|+ |.|..+..+++. |..+|++++.+++..+.+++.+......... ...+...+.. +.. +.+|+
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~----~~~~~~~i~~-~~~--~gvd~ 227 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYK----TDNVAERLRE-LCP--EGVDV 227 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECC----CCCHHHHHHH-HCC--CCceE
Confidence 378988886 456677666665 4337999999988777766533211000000 0011111111 222 35999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+....- ..+..+.++|++||.++..
T Consensus 228 vid~~g~-----------~~~~~~~~~l~~~G~iv~~ 253 (345)
T cd08293 228 YFDNVGG-----------EISDTVISQMNENSHIILC 253 (345)
T ss_pred EEECCCc-----------HHHHHHHHHhccCCEEEEE
Confidence 9764211 1246677899999999863
No 383
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.05 E-value=1.5e+02 Score=28.88 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=28.6
Q ss_pred CCCEEEEECCCCCh--h-HHHHHhcCCCEEEEEeCChHHHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKGG--D-MLKWINGGVKHVVFADIASVSIEDCKTRY 335 (597)
Q Consensus 292 ~~~rVLDLGCGtG~--~-l~~la~~g~~~V~GIDiS~~mIe~A~er~ 335 (597)
++.+||=.|++.|. . +..+++.|. .|++++-++.-+..+.+..
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~ 49 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTL 49 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH
Confidence 35789999986533 3 333556675 8999999887665554433
No 384
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=45.06 E-value=65 Score=35.82 Aligned_cols=88 Identities=13% Similarity=0.119 Sum_probs=51.1
Q ss_pred CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
.+.+|+=+|+|. |......++....+|+++|.++.-...|.. .+.. ... +.+.+ ...|+|
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G~~---------v~~--leeal----~~aDVV 254 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DGFR---------VMT--MEEAA----KIGDIF 254 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cCCE---------eCC--HHHHH----hcCCEE
Confidence 578999999997 554444444333589999998864433332 1110 111 11112 236888
Q ss_pred EEccchhhhccCHHHHHHHHH-HHHHhccCCcEEEEEeC
Q psy17742 371 SCQFCIHYSFESVQQARCMLK-NAAECLKPGGFFVGTVP 408 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~-~i~rlLKPGG~fIit~p 408 (597)
++.-.- ..++. .....+|+||+|+..-.
T Consensus 255 ItaTG~----------~~vI~~~~~~~mK~GailiN~G~ 283 (406)
T TIGR00936 255 ITATGN----------KDVIRGEHFENMKDGAIVANIGH 283 (406)
T ss_pred EECCCC----------HHHHHHHHHhcCCCCcEEEEECC
Confidence 763211 23343 47788999999986543
No 385
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=44.28 E-value=57 Score=37.15 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=59.8
Q ss_pred CEEEEECCCC-C-hhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccc----------cceeehhhhccCC
Q psy17742 294 IKVLDMGSGK-G-GDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR----------RNVFSAELRSQYE 361 (597)
Q Consensus 294 ~rVLDLGCGt-G-~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~----------~d~F~~dl~e~l~ 361 (597)
.+|-=||+|+ | +.+..++..|+ .|+..|.+++.++.+.++....-......... +.....++ ..+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~-~~l- 82 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDL-HAL- 82 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCH-HHh-
Confidence 5688889996 3 45555777775 89999999999998876654322111000000 00111111 112
Q ss_pred CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEE
Q psy17742 362 DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404 (597)
Q Consensus 362 ~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fI 404 (597)
...|+|+.. +++..+-...++..+.+.++|+.+|.
T Consensus 83 ---~~aDlVIEa-----v~E~~~vK~~vf~~l~~~~~~~~Ila 117 (503)
T TIGR02279 83 ---ADAGLVIEA-----IVENLEVKKALFAQLEELCPADTIIA 117 (503)
T ss_pred ---CCCCEEEEc-----CcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 136777654 35555667778888888888876554
No 386
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=44.27 E-value=39 Score=35.20 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCChhHHHHHhc------CCCEEEEEeCCh
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING------GVKHVVFADIAS 325 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~------g~~~V~GIDiS~ 325 (597)
++..++|+|||.|.++..++.. ....++.||-..
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 5678999999999988876543 234789999855
No 387
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=44.05 E-value=83 Score=34.32 Aligned_cols=107 Identities=13% Similarity=0.084 Sum_probs=56.7
Q ss_pred CCCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|+|. |..+..+++ .|...++.+|.++.-++.|++.-.. ...... ...+...+.. +.. ...+|+
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~-~v~~~~----~~~~~~~v~~-~~~-~~g~Dv 257 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCE-TVDLSK----DATLPEQIEQ-ILG-EPEVDC 257 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCe-EEecCC----cccHHHHHHH-HcC-CCCCcE
Confidence 567777788864 444445554 4655577789988888887763211 000000 0001111111 111 124898
Q ss_pred EEEccchh------hhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIH------YSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh------~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+-.-.-. -.+. .+....+....++|++||.+++.-
T Consensus 258 vid~~G~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKK--EAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred EEECCCCccccccccccc--cchHHHHHHHHHHhhCCCEEEEee
Confidence 87643221 0000 122347888889999999998743
No 388
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=43.50 E-value=66 Score=36.68 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=61.4
Q ss_pred CEEEEECCCC-C-hhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccc----------ccceeehhhhccCC
Q psy17742 294 IKVLDMGSGK-G-GDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPY----------RRNVFSAELRSQYE 361 (597)
Q Consensus 294 ~rVLDLGCGt-G-~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~----------~~d~F~~dl~e~l~ 361 (597)
.+|-=||+|+ | +.+..++..|+ .|+..|.+++.++.+.++....-........ -+.....+. ..+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~-~~~- 84 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEAL-ADL- 84 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHh-
Confidence 5688889995 4 46666777786 8999999999999987765532211100000 000111111 112
Q ss_pred CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742 362 DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG 405 (597)
Q Consensus 362 ~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi 405 (597)
...|+|+.. ++++.+-...++..+..+++|+.+|..
T Consensus 85 ---~~aDlViEa-----v~E~~~vK~~vf~~l~~~~~~~ailas 120 (507)
T PRK08268 85 ---ADCDLVVEA-----IVERLDVKQALFAQLEAIVSPDCILAT 120 (507)
T ss_pred ---CCCCEEEEc-----CcccHHHHHHHHHHHHhhCCCCcEEEE
Confidence 136777654 356667777888888888888876653
No 389
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=43.26 E-value=94 Score=33.20 Aligned_cols=100 Identities=18% Similarity=0.096 Sum_probs=57.3
Q ss_pred CCCCEEEEECCCC--ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCcee
Q psy17742 291 GSPIKVLDMGSGK--GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELD 368 (597)
Q Consensus 291 ~~~~rVLDLGCGt--G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFD 368 (597)
+++.+||=.|... |..+..|++.-...++++--+++-.+.+++...+.-..... .-|...+.+.... ..+|
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~-----~~~~~~v~~~t~g--~gvD 213 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYRE-----EDFVEQVRELTGG--KGVD 213 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCc-----ccHHHHHHHHcCC--CCce
Confidence 3578999998544 56777777654237777777776666555543222111000 0122112222221 3599
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
+|+..-.- ..+....+.|++||.++..-.
T Consensus 214 vv~D~vG~-----------~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 214 VVLDTVGG-----------DTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred EEEECCCH-----------HHHHHHHHHhccCCEEEEEec
Confidence 99886332 345567788999999987544
No 390
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=43.01 E-value=37 Score=36.28 Aligned_cols=33 Identities=24% Similarity=0.279 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHH
Q psy17742 384 QQARCMLKNAAECLKPGGFFVGTVPDS--NQIMAR 416 (597)
Q Consensus 384 ~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~ 416 (597)
..+..+|..+..+|+|||++++.+.++ +.++++
T Consensus 217 ~~L~~~L~~~~~~L~~gGrl~VISfHSLEDRiVK~ 251 (305)
T TIGR00006 217 EELEEALQFAPNLLAPGGRLSIISFHSLEDRIVKN 251 (305)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHH
Confidence 577899999999999999999888877 666665
No 391
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=42.24 E-value=1.1e+02 Score=30.83 Aligned_cols=97 Identities=13% Similarity=0.095 Sum_probs=52.1
Q ss_pred CCCEEEEECCC--CChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSG--KGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCG--tG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||-.||. .|..+..+++.....+++++.++...+.+++. +...... .....+...+..... ...+|+
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~~~~~-~~~~~~~~~i~~~~~--~~~~d~ 211 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARAL----GADHVID-YRDPDLRERVKALTG--GRGVDV 211 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHc----CCceeee-cCCccHHHHHHHHcC--CCCcEE
Confidence 56789999983 45555555554334799999998877776442 1110000 000001111111111 134898
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
++....- ..+..+.+.++++|.++..
T Consensus 212 v~~~~g~-----------~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 212 VYDPVGG-----------DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred EEECccH-----------HHHHHHHHhhccCCEEEEE
Confidence 8764221 2345567888999988754
No 392
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=41.96 E-value=81 Score=30.46 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=43.7
Q ss_pred CCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCC---CCCCcee
Q psy17742 293 PIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYE---DKALELD 368 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~---~~~~sFD 368 (597)
..-|||+|=|+|+.-.++... ....++.+|-.-.+- ... .+.-.+.+..++.+.++ .-..+.-
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~h-------p~~------~P~~~~~ilGdi~~tl~~~~~~g~~a~ 95 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACH-------PSS------TPPEEDLILGDIRETLPALARFGAGAA 95 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S--------GGG---------GGGEEES-HHHHHHHHHHH-S-EE
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccC-------CCC------CCchHheeeccHHHHhHHHHhcCCceE
Confidence 467999999999988777654 235899999643221 110 00011234433222222 1122355
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
++.+-...|+--.+......+-.-+..+|.|||+++-.
T Consensus 96 laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~ 133 (160)
T PF12692_consen 96 LAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSG 133 (160)
T ss_dssp EEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEES
T ss_pred EEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeC
Confidence 55555555542000011222233456888999998764
No 393
>PRK07576 short chain dehydrogenase; Provisional
Probab=41.92 E-value=2.1e+02 Score=28.85 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=27.8
Q ss_pred CCCEEEEECCCCC--h-hHHHHHhcCCCEEEEEeCChHHHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKG--G-DMLKWINGGVKHVVFADIASVSIEDCKTRY 335 (597)
Q Consensus 292 ~~~rVLDLGCGtG--~-~l~~la~~g~~~V~GIDiS~~mIe~A~er~ 335 (597)
.+.+||=.|.+.| . .+..++..|. .|+++|.++..+....+..
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~ 53 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQL 53 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH
Confidence 3578888886443 2 3334666674 8999999887665544433
No 394
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.87 E-value=93 Score=32.27 Aligned_cols=175 Identities=17% Similarity=0.185 Sum_probs=86.7
Q ss_pred CEEEEECCCCCh--hHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccc----------ccceeehhhhccCC
Q psy17742 294 IKVLDMGSGKGG--DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPY----------RRNVFSAELRSQYE 361 (597)
Q Consensus 294 ~rVLDLGCGtG~--~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~----------~~d~F~~dl~e~l~ 361 (597)
.+|.=||+|.=+ .+..++..|. .|+.+|.+++.++.+.++............. ....+..++ +.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~- 81 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL-EDL- 81 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH-HHh-
Confidence 468888999633 4444666775 8999999999988876654332110000000 000111111 112
Q ss_pred CCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCC
Q psy17742 362 DKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRP 441 (597)
Q Consensus 362 ~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~ 441 (597)
...|+|+..- ++...-...+++.+...++|+..|+..+.... +. .+... ......+..++|-.+.. .
T Consensus 82 ---~~aD~Vieav-----pe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~-~s-~la~~--~~~~~r~~g~h~~~p~~-~ 148 (292)
T PRK07530 82 ---ADCDLVIEAA-----TEDETVKRKIFAQLCPVLKPEAILATNTSSIS-IT-RLASA--TDRPERFIGIHFMNPVP-V 148 (292)
T ss_pred ---cCCCEEEEcC-----cCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC-HH-HHHhh--cCCcccEEEeeccCCcc-c
Confidence 2378877642 23334456788899999999887763333222 21 22221 00112233444433100 0
Q ss_pred CCCcccceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEEecHHHHHH
Q psy17742 442 PPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLR 492 (597)
Q Consensus 442 ~p~fG~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~~F~ef~~e 492 (597)
.+. ...- ......+ -..+.+..+++..|...+....-.-|+.+
T Consensus 149 ~~~----vei~--~g~~t~~--~~~~~~~~~~~~~gk~~v~~~d~pg~i~n 191 (292)
T PRK07530 149 MKL----VELI--RGIATDE--ATFEAAKEFVTKLGKTITVAEDFPAFIVN 191 (292)
T ss_pred Cce----EEEe--CCCCCCH--HHHHHHHHHHHHcCCeEEEecCcCChHHH
Confidence 000 0000 0000000 12456788899999988877665555543
No 395
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=41.86 E-value=4.2e+02 Score=27.43 Aligned_cols=198 Identities=14% Similarity=0.131 Sum_probs=99.1
Q ss_pred CEEEEECCCCCh--hHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccc-c----------ccceeehhhhccC
Q psy17742 294 IKVLDMGSGKGG--DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARP-Y----------RRNVFSAELRSQY 360 (597)
Q Consensus 294 ~rVLDLGCGtG~--~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~-~----------~~d~F~~dl~e~l 360 (597)
.+|.=||+|.-+ .+..++..|. .|+.+|.++..++.++++............ . .+..+..++.+.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 357778998633 4444566664 899999999999988776432211000000 0 0001122222112
Q ss_pred CCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC--hhHHHHHHhhhccCccCCceEEEEecCCC
Q psy17742 361 EDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD--SNQIMARYRRHQSASFGNDVYQVQCLFDT 438 (597)
Q Consensus 361 ~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn--~~~i~~~l~~~~~~~fgN~vy~I~F~~~~ 438 (597)
...|+|+..- ++..+-...+++++...++++..|...+.. ...+...+ .....+..++|..+
T Consensus 83 ----~~aDlVieav-----pe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~------~~~~r~vg~Hf~~p- 146 (287)
T PRK08293 83 ----KDADLVIEAV-----PEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEAT------GRPEKFLALHFANE- 146 (287)
T ss_pred ----cCCCEEEEec-----cCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhc------CCcccEEEEcCCCC-
Confidence 2368877642 233355678889999888877655332221 12222211 12233444555442
Q ss_pred CCCCCCcccceeeeccccccccccCC---CHHHHHHHHHHcCCeEEEE-EecHHHHHHHhhcccchHHHHHHhhhccCCc
Q psy17742 439 SRPPPLFGAKYDFNLEGVVNCPEFLV---YFPLLERIAGEFGLKRILK-ENFRSFYLRKIKEHAGLNLLRKMNALEGHHK 514 (597)
Q Consensus 439 ~d~~p~fG~~Y~F~L~d~Vn~pEYlv---~~e~L~~La~eaGfelV~~-~~F~ef~~e~~~~~~~~~Ll~rM~~l~~~~~ 514 (597)
.+....- +.+. ---. ..+.+.++++..|...+.. ..-+.|+-+..-.. -+.+-+.-++
T Consensus 147 -----~~~~~lv----evv~--~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~---~~~ea~~l~~---- 208 (287)
T PRK08293 147 -----IWKNNTA----EIMG--HPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVP---FLSAALALWA---- 208 (287)
T ss_pred -----CCcCCeE----EEeC--CCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHH---HHHHHHHHHH----
Confidence 1111110 1110 0011 2456778899999988766 47777765443211 1222222222
Q ss_pred ccCCCHHHHHHH
Q psy17742 515 VGTLSKAEWEAI 526 (597)
Q Consensus 515 ~g~Ls~~E~E~~ 526 (597)
.|..+.++-+.+
T Consensus 209 ~g~a~~~~iD~a 220 (287)
T PRK08293 209 KGVADPETIDKT 220 (287)
T ss_pred cCCCCHHHHHHH
Confidence 356777777755
No 396
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=41.72 E-value=42 Score=35.86 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHh
Q psy17742 384 QQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYR 418 (597)
Q Consensus 384 ~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~ 418 (597)
..+..+|..+..+|+|||+|++.+.++ +.|++.+-
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLEDRiVK~ff 257 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHSLEDRIVKNFF 257 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecchHHHHHHHHH
Confidence 678999999999999999998888777 66666543
No 397
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=41.26 E-value=2e+02 Score=28.21 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=50.6
Q ss_pred EEEEECCCCChh--HHHHHhcCCCEEEEEeCChHHHHHHHHHHHh---hhhhcccc-cc--ccceeehhhhccCCCCCCc
Q psy17742 295 KVLDMGSGKGGD--MLKWINGGVKHVVFADIASVSIEDCKTRYEE---LKRKEEAR-PY--RRNVFSAELRSQYEDKALE 366 (597)
Q Consensus 295 rVLDLGCGtG~~--l~~la~~g~~~V~GIDiS~~mIe~A~er~~~---~~~~~~~~-~~--~~d~F~~dl~e~l~~~~~s 366 (597)
+|-=+|.|-=++ +..++..|. +|+|+|+++.-++..++-... .+...... .. .+..+..+....+ ..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai----~~ 76 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAI----KD 76 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHH----HH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhh----hc
Confidence 355567776443 333677775 999999999988776642110 00000000 00 0002222211111 13
Q ss_pred eeEEEEccchhhh---ccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 367 LDLVSCQFCIHYS---FESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 367 FDvVi~~~vLh~l---Fes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
.|+++..-....- ..+...+..+++.+.+.|++|-.+++..
T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence 6666543211110 0112456889999999999988877743
No 398
>PRK06701 short chain dehydrogenase; Provisional
Probab=40.80 E-value=1.9e+02 Score=29.78 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCCh
Q psy17742 292 SPIKVLDMGSGKGG---DMLKWINGGVKHVVFADIAS 325 (597)
Q Consensus 292 ~~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~ 325 (597)
.+++||=.|++.|. .+..+++.|. +|+.++.+.
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~ 80 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDE 80 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 35789999876544 3444666774 888888775
No 399
>PLN02494 adenosylhomocysteinase
Probab=40.79 E-value=75 Score=36.05 Aligned_cols=88 Identities=13% Similarity=0.134 Sum_probs=52.3
Q ss_pred CCCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
.+++|+=+|+|. |..+...++ .|. +|+++|.++.-...|... +.. .. .+.+.+ ...|+
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~----G~~---------vv--~leEal----~~ADV 312 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALME----GYQ---------VL--TLEDVV----SEADI 312 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhc----CCe---------ec--cHHHHH----hhCCE
Confidence 578999999996 544444443 454 899999988643333221 100 11 111112 23799
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
|++.-.-.+ .+.......+|+||+|+-.-.
T Consensus 313 VI~tTGt~~---------vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 313 FVTTTGNKD---------IIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred EEECCCCcc---------chHHHHHhcCCCCCEEEEcCC
Confidence 887322211 234677789999999987655
No 400
>KOG1201|consensus
Probab=40.49 E-value=1.4e+02 Score=31.91 Aligned_cols=76 Identities=21% Similarity=0.304 Sum_probs=51.6
Q ss_pred CCCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehh---------hhcc
Q psy17742 292 SPIKVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE---------LRSQ 359 (597)
Q Consensus 292 ~~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~d---------l~e~ 359 (597)
.+..||==|.|.|. .+..+++.|. .++..|++....++..+..++.+ . . ..+..| +...
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g-~--~-----~~y~cdis~~eei~~~a~~ 107 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG-E--A-----KAYTCDISDREEIYRLAKK 107 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC-c--e-----eEEEecCCCHHHHHHHHHH
Confidence 57889999998875 5666888885 89999999999888877776553 1 1 023332 2222
Q ss_pred CCCCCCceeEEEEccch
Q psy17742 360 YEDKALELDLVSCQFCI 376 (597)
Q Consensus 360 l~~~~~sFDvVi~~~vL 376 (597)
....-|..|+++.+..+
T Consensus 108 Vk~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 108 VKKEVGDVDILVNNAGI 124 (300)
T ss_pred HHHhcCCceEEEecccc
Confidence 33334668999987653
No 401
>PTZ00357 methyltransferase; Provisional
Probab=40.48 E-value=1.1e+02 Score=36.38 Aligned_cols=107 Identities=14% Similarity=0.146 Sum_probs=55.8
Q ss_pred CEEEEECCCCChhHHHHHhc----CC-CEEEEEeCChHHHHHHHHHH-Hhhhhhcc--ccccccceeehhhhccC-----
Q psy17742 294 IKVLDMGSGKGGDMLKWING----GV-KHVVFADIASVSIEDCKTRY-EELKRKEE--ARPYRRNVFSAELRSQY----- 360 (597)
Q Consensus 294 ~rVLDLGCGtG~~l~~la~~----g~-~~V~GIDiS~~mIe~A~er~-~~~~~~~~--~~~~~~d~F~~dl~e~l----- 360 (597)
..|+=+|+|.|-+....++. +. -+|++|+-++..+.....+. ........ .-.....++..|+...-
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46899999999988764432 32 37999999976544444432 21111110 00000113444433211
Q ss_pred -----CCCCCceeEEEEccchhhhccCHHHHHHHHHHHHHhccC----CcE
Q psy17742 361 -----EDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKP----GGF 402 (597)
Q Consensus 361 -----~~~~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKP----GG~ 402 (597)
+..-+++|+|++-. | -.|.+.+--...|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSEL-L-GSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSEL-L-GSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHhh-h-cccccccCCHHHHHHHHHhhhhhcccccc
Confidence 11124799998731 1 1123333344566677777765 675
No 402
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.42 E-value=2.2e+02 Score=29.74 Aligned_cols=168 Identities=13% Similarity=0.056 Sum_probs=81.7
Q ss_pred CEEEEECCCCC--hhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh-cccc---cccc-ceeehhhhccCCCCCCc
Q psy17742 294 IKVLDMGSGKG--GDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK-EEAR---PYRR-NVFSAELRSQYEDKALE 366 (597)
Q Consensus 294 ~rVLDLGCGtG--~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~-~~~~---~~~~-d~F~~dl~e~l~~~~~s 366 (597)
.+|.=||+|.= .++..++..|. +|+++|.++..++.+++........ .... .... ..+..+..+.+ ..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~ 79 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAV----SG 79 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHh----cc
Confidence 45788899963 34455666674 8999999999988887653221100 0000 0000 01111111112 23
Q ss_pred eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHhhhccCccCCceEEEEecCCCCCCCCCcc
Q psy17742 367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFG 446 (597)
Q Consensus 367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~~~~~~~fgN~vy~I~F~~~~~d~~p~fG 446 (597)
.|+|+..- .+.......++..+..+++++. ++.+....-.+. .+... ..-...+..++|... +..+
T Consensus 80 aDlVi~av-----~~~~~~~~~v~~~l~~~~~~~~-ii~s~tsg~~~~-~l~~~--~~~~~~~ig~h~~~p-----~~~~ 145 (311)
T PRK06130 80 ADLVIEAV-----PEKLELKRDVFARLDGLCDPDT-IFATNTSGLPIT-AIAQA--VTRPERFVGTHFFTP-----ADVI 145 (311)
T ss_pred CCEEEEec-----cCcHHHHHHHHHHHHHhCCCCc-EEEECCCCCCHH-HHHhh--cCCcccEEEEccCCC-----CccC
Confidence 78887642 1222345678888888777655 444444442222 22221 011233555555432 1111
Q ss_pred cceeeeccccccccccCCCHHHHHHHHHHcCCeEEEEE
Q psy17742 447 AKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKE 484 (597)
Q Consensus 447 ~~Y~F~L~d~Vn~pEYlv~~e~L~~La~eaGfelV~~~ 484 (597)
...........+ --..+.+.++++..|...+...
T Consensus 146 ~l~~i~~g~~t~----~~~~~~v~~l~~~~G~~~v~~~ 179 (311)
T PRK06130 146 PLVEVVRGDKTS----PQTVATTMALLRSIGKRPVLVK 179 (311)
T ss_pred ceEEEeCCCCCC----HHHHHHHHHHHHHcCCEEEEEc
Confidence 111110000000 0124568889999999887664
No 403
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=39.97 E-value=34 Score=36.59 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHHHh
Q psy17742 384 QQARCMLKNAAECLKPGGFFVGTVPDS--NQIMARYR 418 (597)
Q Consensus 384 ~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~l~ 418 (597)
..+..+|..+..+|+|||++++.+.++ +.+++..-
T Consensus 218 ~~L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f 254 (310)
T PF01795_consen 218 EELERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFF 254 (310)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHH
Confidence 578899999999999999999999888 66665543
No 404
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=39.86 E-value=53 Score=30.08 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=23.9
Q ss_pred EECCCCC--hhHHHHH--hc-CCCEEEEEeCChHHHHHHHHH
Q psy17742 298 DMGSGKG--GDMLKWI--NG-GVKHVVFADIASVSIEDCKTR 334 (597)
Q Consensus 298 DLGCGtG--~~l~~la--~~-g~~~V~GIDiS~~mIe~A~er 334 (597)
|||++.| .....+. .. ....|+++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 22 246899999999999988887
No 405
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=39.59 E-value=63 Score=34.96 Aligned_cols=89 Identities=17% Similarity=0.066 Sum_probs=49.5
Q ss_pred CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHH-HHHHHHHHHhhhhhccccccccceee----hhhhccCCCCCC
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVS-IEDCKTRYEELKRKEEARPYRRNVFS----AELRSQYEDKAL 365 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~m-Ie~A~er~~~~~~~~~~~~~~~d~F~----~dl~e~l~~~~~ 365 (597)
++.+||=.|+|. |..+..+++....++++++.++.. .+.+++ .+... .+. ..+.... +
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~----lGa~~--------~i~~~~~~~v~~~~----~ 241 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDR----LGADS--------FLVTTDSQKMKEAV----G 241 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHh----CCCcE--------EEcCcCHHHHHHhh----C
Confidence 567888888864 445555555433479999987653 333322 22110 111 0111111 1
Q ss_pred ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
.+|+|+-.-.- ...+..+.++|++||.++..
T Consensus 242 ~~D~vid~~G~----------~~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 242 TMDFIIDTVSA----------EHALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CCcEEEECCCc----------HHHHHHHHHhhcCCCEEEEE
Confidence 38888764211 13567777899999999764
No 406
>PRK09242 tropinone reductase; Provisional
Probab=39.11 E-value=2.5e+02 Score=27.82 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=30.1
Q ss_pred CCCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKTRYE 336 (597)
Q Consensus 292 ~~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~~mIe~A~er~~ 336 (597)
.++++|=.|++.|. .+..+++.|. +|+.++.+.+.++...+...
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~ 54 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELA 54 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHH
Confidence 35789999986543 3344666675 89999998877666555443
No 407
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=39.10 E-value=2.5e+02 Score=27.83 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=25.4
Q ss_pred CCEEEEECCCC-Ch-hHHHHHhcCCCEEEEEeCC
Q psy17742 293 PIKVLDMGSGK-GG-DMLKWINGGVKHVVFADIA 324 (597)
Q Consensus 293 ~~rVLDLGCGt-G~-~l~~la~~g~~~V~GIDiS 324 (597)
..+|+=+|||. |. .+..++..|+.+++.+|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 57899999995 44 4444778888899999998
No 408
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=39.09 E-value=1e+02 Score=32.29 Aligned_cols=98 Identities=19% Similarity=0.146 Sum_probs=51.3
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||-.|+|. |..+..+++. |...|++++-++.-.+.+++.-...-.... ...+. .+..... .+.+|+
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~-~~~~~~~--~~~vd~ 234 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPR-----EEDVV-EVKSVTD--GTGVDV 234 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcc-----cccHH-HHHHHcC--CCCCCE
Confidence 467788777653 4455555544 443788887777666555542110000000 00111 1111122 235899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+..-.- ...+..+.++|+++|.++...
T Consensus 235 vld~~g~----------~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 235 VLEMSGN----------PKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred EEECCCC----------HHHHHHHHHHhccCCEEEEEc
Confidence 9764211 124566778899999998654
No 409
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=38.78 E-value=49 Score=35.14 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCh--hHHHHH
Q psy17742 384 QQARCMLKNAAECLKPGGFFVGTVPDS--NQIMAR 416 (597)
Q Consensus 384 ~d~~~~L~~i~rlLKPGG~fIit~pn~--~~i~~~ 416 (597)
..+..+|..+..+|+|||++++.+.++ +.+++.
T Consensus 213 ~~L~~~L~~~~~~L~~gGrl~visfHSlEDriVK~ 247 (296)
T PRK00050 213 EELERALEAALDLLKPGGRLAVISFHSLEDRIVKR 247 (296)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHH
Confidence 678899999999999999999888877 666655
No 410
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=38.76 E-value=1.5e+02 Score=31.25 Aligned_cols=39 Identities=28% Similarity=0.348 Sum_probs=27.7
Q ss_pred CCCEEEEECCCC-ChhHHHH-HhcCCCEEEEEeCChHHHHH
Q psy17742 292 SPIKVLDMGSGK-GGDMLKW-INGGVKHVVFADIASVSIED 330 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~l-a~~g~~~V~GIDiS~~mIe~ 330 (597)
++.+|+=+|+|. |..+... ...+...|+.+|.++.-...
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~ 217 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE 217 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 578999999986 5544443 34466789999999865433
No 411
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.26 E-value=1.1e+02 Score=28.31 Aligned_cols=33 Identities=30% Similarity=0.305 Sum_probs=25.8
Q ss_pred CCEEEEECCCCChhHHH-HHhcCCCEEEEEeCChH
Q psy17742 293 PIKVLDMGSGKGGDMLK-WINGGVKHVVFADIASV 326 (597)
Q Consensus 293 ~~rVLDLGCGtG~~l~~-la~~g~~~V~GIDiS~~ 326 (597)
..+|.++|-|.=....+ +++.|+ .++++||.+.
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~ 47 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK 47 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc
Confidence 35899999987665555 666775 8999999876
No 412
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=38.03 E-value=55 Score=35.32 Aligned_cols=102 Identities=20% Similarity=0.273 Sum_probs=65.6
Q ss_pred CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh--hhhccCCCCCCcee
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA--ELRSQYEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~--dl~e~l~~~~~sFD 368 (597)
++.+|.=||.|. |..+.+++-...+.|+-+|+|..-+.+...-+...-.. .... .+.+.+ .+.|
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~---------~~st~~~iee~v----~~aD 233 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHT---------LYSTPSNIEEAV----KKAD 233 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEE---------EEcCHHHHHHHh----hhcc
Confidence 356788899886 66777777655579999999988776665544322000 1111 122222 3589
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+|+..--+-- ...+.-+.+++.+.+|||++++=.-.+.
T Consensus 234 lvIgaVLIpg----akaPkLvt~e~vk~MkpGsVivDVAiDq 271 (371)
T COG0686 234 LVIGAVLIPG----AKAPKLVTREMVKQMKPGSVIVDVAIDQ 271 (371)
T ss_pred EEEEEEEecC----CCCceehhHHHHHhcCCCcEEEEEEEcC
Confidence 9887543422 3567778899999999999887554443
No 413
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=37.84 E-value=28 Score=33.75 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 384 QQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 384 ~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
.-+..++.++.|+|||||.+++.+.+.
T Consensus 33 ~~~~~~~~~~~rvLk~~g~~~i~~~~~ 59 (231)
T PF01555_consen 33 EWMEEWLKECYRVLKPGGSIFIFIDDR 59 (231)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE-CC
T ss_pred HHHHHHHHHHHhhcCCCeeEEEEecch
Confidence 456788999999999999999987766
No 414
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=37.68 E-value=77 Score=33.94 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=32.9
Q ss_pred CCCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742 291 GSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE 336 (597)
Q Consensus 291 ~~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~ 336 (597)
+.+-+|.-+|+|.-..+..+.. ....|.+||+++..|..-+-+..
T Consensus 62 g~ghrivtigSGGcn~L~ylsr-~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSR-APARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhc-CCceeEEEeCCHHHHHHHHHHHH
Confidence 4678999999994445554544 44699999999998877665543
No 415
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=37.27 E-value=1.6e+02 Score=30.66 Aligned_cols=98 Identities=12% Similarity=-0.043 Sum_probs=55.8
Q ss_pred CCCEEEEECC--CCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGS--GKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGC--GtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|+ |.|..+..+++....++++++.++...+.+++.+......... ....+...+.. +.. +.+|+
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~---~~~~~~~~i~~-~~~--~gvd~ 224 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYK---EEPDLDAALKR-YFP--NGIDI 224 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcC---CcccHHHHHHH-hCC--CCcEE
Confidence 6788998886 3466666666653348999999988777776532211000000 00001111111 111 35898
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+-... . ..+..+.++|+++|.++..
T Consensus 225 v~d~~g---------~--~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 225 YFDNVG---------G--KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred EEECCC---------H--HHHHHHHHHhccCcEEEEe
Confidence 875421 1 3567788999999999854
No 416
>PRK05867 short chain dehydrogenase; Provisional
Probab=37.09 E-value=2.1e+02 Score=28.41 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=31.0
Q ss_pred CCCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKTRYE 336 (597)
Q Consensus 292 ~~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~~mIe~A~er~~ 336 (597)
.+++||=.|++.|. .+..+++.|. +|++++.++..++...+...
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~ 54 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIG 54 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHH
Confidence 35789999987654 4444677775 89999998877766555443
No 417
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=37.07 E-value=1.8e+02 Score=28.17 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=23.7
Q ss_pred EEEEECCCC-ChhH-HHHHhcCCCEEEEEeCCh
Q psy17742 295 KVLDMGSGK-GGDM-LKWINGGVKHVVFADIAS 325 (597)
Q Consensus 295 rVLDLGCGt-G~~l-~~la~~g~~~V~GIDiS~ 325 (597)
+||=+|||. |... ..++..|+.+++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 478899994 6544 446778888899999876
No 418
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=36.44 E-value=1.4e+02 Score=31.24 Aligned_cols=99 Identities=17% Similarity=0.099 Sum_probs=51.6
Q ss_pred CCCEEEEECCC-CChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSG-KGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCG-tG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||-.|+| .|..+..+++. |...|++++-++...+.+++.....-.... ...+...+..... ...+|+
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~-----~~~~~~~l~~~~~--~~~~d~ 233 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPF-----KEDVVKEVADLTD--GEGVDV 233 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEccc-----ccCHHHHHHHhcC--CCCCCE
Confidence 46777777765 24454555544 443488898887766665543110000000 0011111111111 235899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+....- ...+..+.+.|+++|.++..-
T Consensus 234 vld~~g~----------~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 234 FLEMSGA----------PKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred EEECCCC----------HHHHHHHHHhhcCCCEEEEEc
Confidence 9764111 134677788899999987654
No 419
>PRK08265 short chain dehydrogenase; Provisional
Probab=36.36 E-value=2.1e+02 Score=28.63 Aligned_cols=40 Identities=13% Similarity=0.035 Sum_probs=27.1
Q ss_pred CCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCChHHHHHHHH
Q psy17742 293 PIKVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKT 333 (597)
Q Consensus 293 ~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~~mIe~A~e 333 (597)
++++|=.|++.|. .+..+++.|. +|+.+|.++..++...+
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAA 48 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 5688988875543 4444667775 89999998765554433
No 420
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=35.92 E-value=1.6e+02 Score=30.35 Aligned_cols=88 Identities=19% Similarity=0.126 Sum_probs=51.6
Q ss_pred CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+||=.|+|. |..+..+++.....+++++.+++..+.+++ + +... .+.. .... ..+.+|+|
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~---g~~~--------~~~~--~~~~--~~~~~d~v 218 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-L---GVET--------VLPD--EAES--EGGGFDVV 218 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-c---CCcE--------EeCc--cccc--cCCCCCEE
Confidence 567888887643 334444444322469999999988877765 2 1111 1110 1111 22358998
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG 405 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi 405 (597)
+....- ...+..+.+.|+++|.++.
T Consensus 219 id~~g~----------~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 219 VEATGS----------PSGLELALRLVRPRGTVVL 243 (319)
T ss_pred EECCCC----------hHHHHHHHHHhhcCCEEEE
Confidence 764211 2346677788999999986
No 421
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=35.67 E-value=1e+02 Score=33.04 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=30.8
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHH
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKT 333 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~e 333 (597)
++.+||=+|||. |..+..+++. |..+|+++|.++.-++.|++
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 578899999864 4455555554 54479999999998888855
No 422
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=35.56 E-value=1.1e+02 Score=32.62 Aligned_cols=99 Identities=17% Similarity=0.088 Sum_probs=53.2
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=+|+|. |..+..+++. |...|+++|.++.-++.+++.-...-..... ....+...+. .+.. +.+|+
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~---~~~~~~~~v~-~~~~--~g~d~ 259 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKD---HDKPIQQVLV-EMTD--GGVDY 259 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccc---cchHHHHHHH-HHhC--CCCcE
Confidence 578899888763 3444555544 5447999999999888775421110000000 0000101011 1222 25898
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCC-cEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPG-GFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPG-G~fIit 406 (597)
|+-.-. . ...+....++|++| |.++..
T Consensus 260 vid~~g--~--------~~~~~~a~~~l~~~~G~~v~~ 287 (368)
T cd08300 260 TFECIG--N--------VKVMRAALEACHKGWGTSVII 287 (368)
T ss_pred EEECCC--C--------hHHHHHHHHhhccCCCeEEEE
Confidence 876421 1 13566677889887 888764
No 423
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=35.20 E-value=1.5e+02 Score=30.21 Aligned_cols=98 Identities=19% Similarity=0.175 Sum_probs=51.9
Q ss_pred CCCEEEEECCCC--ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK--GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt--G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|.|. |..+..++.....+++.++.++...+.+... +...... .....+...+..... .+.+|+
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~--~~~~d~ 238 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKEL----GADYVID-YRKEDFVREVRELTG--KRGVDV 238 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCCeEEe-cCChHHHHHHHHHhC--CCCCcE
Confidence 467888888754 4555555444335799999988776665432 1110000 000000011111111 135898
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
++....- ..+..+.+.|+++|.++...
T Consensus 239 ~i~~~g~-----------~~~~~~~~~l~~~G~~v~~~ 265 (342)
T cd08266 239 VVEHVGA-----------ATWEKSLKSLARGGRLVTCG 265 (342)
T ss_pred EEECCcH-----------HHHHHHHHHhhcCCEEEEEe
Confidence 8765321 23456667889999988654
No 424
>PRK12939 short chain dehydrogenase; Provisional
Probab=34.96 E-value=2.9e+02 Score=26.90 Aligned_cols=42 Identities=17% Similarity=0.264 Sum_probs=26.8
Q ss_pred CCEEEEECCCCC--hhH-HHHHhcCCCEEEEEeCChHHHHHHHHHH
Q psy17742 293 PIKVLDMGSGKG--GDM-LKWINGGVKHVVFADIASVSIEDCKTRY 335 (597)
Q Consensus 293 ~~rVLDLGCGtG--~~l-~~la~~g~~~V~GIDiS~~mIe~A~er~ 335 (597)
+.+||=.|++.| ..+ ..+++.|. ++++++.++..+....+..
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~ 51 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAAL 51 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHH
Confidence 577887776433 333 33556674 8999998887666555444
No 425
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=34.94 E-value=1.1e+02 Score=32.57 Aligned_cols=91 Identities=16% Similarity=0.092 Sum_probs=49.6
Q ss_pred CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh--h-hhccCCCCCCce
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA--E-LRSQYEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~--d-l~e~l~~~~~sF 367 (597)
++.+||=+|+|. |..+..+++.....+++++.++.....+.+.+. .... +... + +.. .. ..+
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~G---a~~~-------i~~~~~~~~~~-~~---~~~ 245 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLG---ADDY-------LVSSDAAEMQE-AA---DSL 245 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcC---CcEE-------ecCCChHHHHH-hc---CCC
Confidence 567888787654 445555555433478888888766555543322 1100 0000 0 111 11 237
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+|+-.-.- ...+..+.++|++||.++..
T Consensus 246 D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 246 DYIIDTVPV----------FHPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred cEEEECCCc----------hHHHHHHHHHhccCCEEEEE
Confidence 888654211 13566677899999998764
No 426
>PRK07806 short chain dehydrogenase; Provisional
Probab=34.90 E-value=4e+02 Score=26.08 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=21.0
Q ss_pred CCCEEEEECCCC--Ch-hHHHHHhcCCCEEEEEeCCh
Q psy17742 292 SPIKVLDMGSGK--GG-DMLKWINGGVKHVVFADIAS 325 (597)
Q Consensus 292 ~~~rVLDLGCGt--G~-~l~~la~~g~~~V~GIDiS~ 325 (597)
.+.+||=.|++. |. .+..++..|. +|++++.+.
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~ 40 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQK 40 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 357899998744 33 3333556674 788887654
No 427
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=34.73 E-value=1.5e+02 Score=30.96 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=53.5
Q ss_pred CCCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|+|. |..+..+++ .|...|++++.++...+.+++.....-.... ...+...+. .+.. ...+|+
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~-----~~~~~~~~~-~~~~-~~~~d~ 235 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVA-----KEDLRDVMA-ELGM-TEGFDV 235 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCc-----cccHHHHHH-HhcC-CCCCCE
Confidence 467777777754 445555554 3544688888888777666543111000000 000111011 1221 234899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
|+....- ...+..+.++|+++|.++..-.
T Consensus 236 v~d~~g~----------~~~~~~~~~~l~~~G~~v~~g~ 264 (341)
T PRK05396 236 GLEMSGA----------PSAFRQMLDNMNHGGRIAMLGI 264 (341)
T ss_pred EEECCCC----------HHHHHHHHHHHhcCCEEEEEec
Confidence 8763211 1356667889999999988653
No 428
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=34.46 E-value=2.6e+02 Score=27.62 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=30.0
Q ss_pred CCCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKTRYE 336 (597)
Q Consensus 292 ~~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~~mIe~A~er~~ 336 (597)
.+++||=.|++.|. .+..+++.|. .|++++.+++.++...+...
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~ 56 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALR 56 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHH
Confidence 46789988876543 3334666675 89999999877666555443
No 429
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=34.36 E-value=1e+02 Score=33.59 Aligned_cols=43 Identities=14% Similarity=0.185 Sum_probs=32.0
Q ss_pred CCCEEEEEC-CC-CChhHHHHHhc---CCCEEEEEeCChHHHHHHHHH
Q psy17742 292 SPIKVLDMG-SG-KGGDMLKWING---GVKHVVFADIASVSIEDCKTR 334 (597)
Q Consensus 292 ~~~rVLDLG-CG-tG~~l~~la~~---g~~~V~GIDiS~~mIe~A~er 334 (597)
++.+||=+| +| .|..+..+++. |..+|+++|.++.-++.|++.
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 567888887 45 46666666664 335799999999999988775
No 430
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=34.13 E-value=1.8e+02 Score=29.20 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=24.7
Q ss_pred CCEEEEECCCC-ChhH-HHHHhcCCCEEEEEeCCh
Q psy17742 293 PIKVLDMGSGK-GGDM-LKWINGGVKHVVFADIAS 325 (597)
Q Consensus 293 ~~rVLDLGCGt-G~~l-~~la~~g~~~V~GIDiS~ 325 (597)
..+||=+|||. |... ..++..|+.+++.+|...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 57899999994 5544 447788888999997554
No 431
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=34.06 E-value=1.5e+02 Score=31.45 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=54.2
Q ss_pred CCCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|+|. |..+..+++ .|...++++|.++...+.+++.....-.... ...+...+.. +. ...+|+
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~-----~~~~~~~v~~-~~--~~~~d~ 257 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPK-----EEDLVAAIRE-IT--GGGVDY 257 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCC-----CcCHHHHHHH-Hh--CCCCcE
Confidence 567888888754 445455554 4555799999998877766542110000000 0011111111 11 135899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+..-.- ...+..+.++|+++|.++..-
T Consensus 258 vld~~g~----------~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 258 ALDTTGV----------PAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred EEECCCC----------cHHHHHHHHHhccCCEEEEeC
Confidence 8764211 124677788899999988643
No 432
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=33.85 E-value=1.2e+02 Score=31.85 Aligned_cols=99 Identities=17% Similarity=0.101 Sum_probs=51.7
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceee---hhhhccCCCCCCc
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFS---AELRSQYEDKALE 366 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~---~dl~e~l~~~~~s 366 (597)
++.+||=.|+|. |..+..+++. |..+|++++.++.-.+.+++. +...... .....+. ..+. .+.. ...
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~~vi~-~~~~~~~~~~~~i~-~~~~-~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF----GADATID-IDELPDPQRRAIVR-DITG-GRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCCeEEc-CcccccHHHHHHHH-HHhC-CCC
Confidence 467788888653 3344445544 444899999888766655432 1110000 0000000 0011 1111 135
Q ss_pred eeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 367 LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 367 FDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
+|+|+..-.- ...+....++|+++|.++..-
T Consensus 250 ~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 250 ADVVIEASGH----------PAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CcEEEECCCC----------hHHHHHHHHHhccCCEEEEEc
Confidence 8998754211 124566778999999998653
No 433
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=33.81 E-value=1.3e+02 Score=32.02 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=53.1
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||-.|+|. |..+..+++. |...|++++.++...+.+++ +. ...... .....+...+....+ ...+|+
T Consensus 182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~-~g---~~~vv~-~~~~~~~~~l~~~~~--~~~vd~ 254 (363)
T cd08279 182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARR-FG---ATHTVN-ASEDDAVEAVRDLTD--GRGADY 254 (363)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH-hC---CeEEeC-CCCccHHHHHHHHcC--CCCCCE
Confidence 567888888752 4455555544 54459999988887766643 21 110000 000011111111111 234898
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+..-.- ...+..+.+.|+++|.++...
T Consensus 255 vld~~~~----------~~~~~~~~~~l~~~G~~v~~g 282 (363)
T cd08279 255 AFEAVGR----------AATIRQALAMTRKGGTAVVVG 282 (363)
T ss_pred EEEcCCC----------hHHHHHHHHHhhcCCeEEEEe
Confidence 8753211 135677888999999998653
No 434
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=33.36 E-value=1.4e+02 Score=33.49 Aligned_cols=86 Identities=13% Similarity=0.156 Sum_probs=50.5
Q ss_pred CCCEEEEECCCC-ChhHHH-HHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLK-WINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~-la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
.+.+|+=+|+|. |..+.. +...|. +|+.+|+++.....+... +.. .. .+.+.+ ..+|+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~----G~~---------v~--~l~eal----~~aDV 270 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMD----GFR---------VM--TMEEAA----ELGDI 270 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhc----CCE---------ec--CHHHHH----hCCCE
Confidence 578999999996 444433 334454 899999998654433221 110 11 111112 13899
Q ss_pred EEEccchhhhccCHHHHHHHHH-HHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLK-NAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~-~i~rlLKPGG~fIit~ 407 (597)
|+..-.- ..++. .....+|+|++++..-
T Consensus 271 VI~aTG~----------~~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 271 FVTATGN----------KDVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred EEECCCC----------HHHHHHHHHhcCCCCCEEEEcC
Confidence 8774211 12443 6778899999887654
No 435
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=33.21 E-value=1.3e+02 Score=31.40 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=50.5
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|+|. |..+..+++. |...+++++.++.....+++. +...... .....+...+...... ..+|+
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~-~~~~~~~~~i~~~~~~--~~~d~ 238 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL----GATHTVN-SAKGDAIEQVLELTDG--RGVDV 238 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCceec-cccccHHHHHHHHhCC--CCCCE
Confidence 456777777643 3333444443 435789999988776665532 1110000 0000011111111121 34899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+.... . ...+..+.+.|+++|.++..
T Consensus 239 vld~~g------~----~~~~~~~~~~l~~~g~~v~~ 265 (345)
T cd08286 239 VIEAVG------I----PATFELCQELVAPGGHIANV 265 (345)
T ss_pred EEECCC------C----HHHHHHHHHhccCCcEEEEe
Confidence 875421 0 12467777899999999854
No 436
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=33.19 E-value=3.6e+02 Score=26.61 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=29.3
Q ss_pred CCCEEEEECCCCC--h-hHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKG--G-DMLKWINGGVKHVVFADIASVSIEDCKTRYE 336 (597)
Q Consensus 292 ~~~rVLDLGCGtG--~-~l~~la~~g~~~V~GIDiS~~mIe~A~er~~ 336 (597)
.+++||=.|++.| . .+..+++.|. +|++++.++..++...+...
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~ 55 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLK 55 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHH
Confidence 3578998886433 2 3344666775 89999999877666555443
No 437
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=33.04 E-value=4e+02 Score=25.86 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=26.9
Q ss_pred CCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCChHHHHHHHHHH
Q psy17742 293 PIKVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKTRY 335 (597)
Q Consensus 293 ~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~~mIe~A~er~ 335 (597)
+.+||=.|++.|. .+..+++.|. +|++++-++..+..+....
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l 50 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELV 50 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH
Confidence 4678988865432 3344666675 8999998876555444433
No 438
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=32.90 E-value=85 Score=34.21 Aligned_cols=101 Identities=19% Similarity=0.226 Sum_probs=52.7
Q ss_pred CCCEEEEECCCC-ChhHHHHH-hcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceee-hhhhccCCCCCCcee
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWI-NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFS-AELRSQYEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la-~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~-~dl~e~l~~~~~sFD 368 (597)
++.+|+=+|+|. |..+...+ ..|. .|+.+|.++.-++.+...+... ... .... ..+.+.+ ..+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~---v~~-----~~~~~~~l~~~l----~~aD 232 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGR---IHT-----RYSNAYEIEDAV----KRAD 232 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCce---eEe-----ccCCHHHHHHHH----ccCC
Confidence 356799999984 55555544 4465 8999999987666554433210 000 0000 1122222 2489
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
+|+..-.+... ..+.-+-++..+.++||++++-...+
T Consensus 233 vVI~a~~~~g~----~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 233 LLIGAVLIPGA----KAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred EEEEccccCCC----CCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 99875322000 11111235555678999887755433
No 439
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=32.89 E-value=2e+02 Score=30.24 Aligned_cols=102 Identities=12% Similarity=0.093 Sum_probs=54.9
Q ss_pred CEEEEECCCC-Ch-hHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 294 IKVLDMGSGK-GG-DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 294 ~rVLDLGCGt-G~-~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
.+|+=+|+|. |. ++..|.+.|. .|+.++-+...++..++.- +...... .....+..... .+...+.||+|+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~---Gl~i~~~-g~~~~~~~~~~--~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAG---GLTLVEQ-GQASLYAIPAE--TADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcC---CeEEeeC-CcceeeccCCC--CcccccccCEEE
Confidence 5699999996 44 5555666674 8999999876555554321 1110000 00001111000 011124699886
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
..-=- .+...+++.+..++.++..++ ..-|.
T Consensus 76 v~vK~-------~~~~~al~~l~~~l~~~t~vv-~lQNG 106 (305)
T PRK05708 76 LACKA-------YDAEPAVASLAHRLAPGAELL-LLQNG 106 (305)
T ss_pred EECCH-------HhHHHHHHHHHhhCCCCCEEE-EEeCC
Confidence 64111 244578889999999987544 44444
No 440
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=32.83 E-value=2.8e+02 Score=28.80 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=52.6
Q ss_pred EEEEECCCC-Ch-hHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742 295 KVLDMGSGK-GG-DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC 372 (597)
Q Consensus 295 rVLDLGCGt-G~-~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~ 372 (597)
+|.=||+|. |. .+..+++.|. .|+.+|.++..++..++...............+.....+..+.. ...|+|+.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~D~vi~ 77 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEAL----ADADLILV 77 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHH----hCCCEEEE
Confidence 477788885 33 4444666664 89999999887776655311100000000000001111111111 23788876
Q ss_pred ccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742 373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVG 405 (597)
Q Consensus 373 ~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi 405 (597)
.--- .....++..+...+++|.+++-
T Consensus 78 ~v~~-------~~~~~v~~~l~~~~~~~~~vi~ 103 (325)
T PRK00094 78 AVPS-------QALREVLKQLKPLLPPDAPIVW 103 (325)
T ss_pred eCCH-------HHHHHHHHHHHhhcCCCCEEEE
Confidence 5322 3566778888888888766553
No 441
>PRK08267 short chain dehydrogenase; Provisional
Probab=32.68 E-value=3e+02 Score=27.26 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=27.4
Q ss_pred CEEEEECCCCCh---hHHHHHhcCCCEEEEEeCChHHHHHHHHH
Q psy17742 294 IKVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKTR 334 (597)
Q Consensus 294 ~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~~mIe~A~er 334 (597)
++||=.|++.|. ++..+++.|. +|+.++.++..++.....
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~ 44 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAE 44 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHH
Confidence 358888876542 3344666774 899999988776666544
No 442
>KOG2078|consensus
Probab=32.65 E-value=26 Score=39.02 Aligned_cols=49 Identities=24% Similarity=0.090 Sum_probs=42.8
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK 341 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~ 341 (597)
++..|-|+-||.|-++..++..+ ..|++-|++++|++..+.+...+...
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~ 297 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVD 297 (495)
T ss_pred CcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccc
Confidence 67889999999999999998888 59999999999999999887655443
No 443
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.64 E-value=4.5e+02 Score=26.30 Aligned_cols=35 Identities=9% Similarity=0.015 Sum_probs=24.0
Q ss_pred CCCEEEEECCCC--C--h-hHHHHHhcCCCEEEEEeCChHH
Q psy17742 292 SPIKVLDMGSGK--G--G-DMLKWINGGVKHVVFADIASVS 327 (597)
Q Consensus 292 ~~~rVLDLGCGt--G--~-~l~~la~~g~~~V~GIDiS~~m 327 (597)
.++.+|=.|++. | . .+..+++.|. +|+.++.+...
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~ 48 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKA 48 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhh
Confidence 357899999764 3 2 4445677775 78888887654
No 444
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=32.14 E-value=97 Score=32.90 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=24.3
Q ss_pred CCceeEEEEccc-hhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 364 ALELDLVSCQFC-IHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 364 ~~sFDvVi~~~v-Lh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
.+.||+|+.... .|++ . + ++..+++|||.|++.+.
T Consensus 220 ~~~Fd~ifvs~s~vh~L-~----p-----~l~~~~a~~A~LvvEta 255 (289)
T PF14740_consen 220 QNFFDLIFVSCSMVHFL-K----P-----ELFQALAPDAVLVVETA 255 (289)
T ss_pred cCCCCEEEEhhhhHhhc-c----h-----HHHHHhCCCCEEEEEcc
Confidence 356999977655 4444 1 1 26778899999999764
No 445
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=32.11 E-value=1.7e+02 Score=31.10 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=52.1
Q ss_pred CCCEEEEECCC-CChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSG-KGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCG-tG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|+| .|..+..+++. |...+++++.++...+.+++. . ...... .....+...+...... ..+|+
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~-g---~~~v~~-~~~~~~~~~l~~~~~~--~~~d~ 259 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL-G---ATHTVN-AAKEDAVAAIREITGG--RGVDV 259 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-C---CceEec-CCcccHHHHHHHHhCC--CCCCE
Confidence 46678877664 24444445543 554499999998877766432 1 110000 0000011111111222 34899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+....- . ..+..+.++|+++|.++...
T Consensus 260 vld~vg~-------~---~~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 260 VVEALGK-------P---ETFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred EEEeCCC-------H---HHHHHHHHHHhcCCEEEEEc
Confidence 8764211 1 25677788999999998653
No 446
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=31.97 E-value=4e+02 Score=26.60 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=31.0
Q ss_pred CCCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742 292 SPIKVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKTRYEE 337 (597)
Q Consensus 292 ~~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~ 337 (597)
.++++|=.|++.|. .+..++..|. +|+.++-++..++.+......
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~ 56 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRE 56 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHh
Confidence 35789999887654 3444666775 799999988777666555443
No 447
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=31.82 E-value=3.7e+02 Score=25.86 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=31.0
Q ss_pred CCCEEEEECCCCChhHH---HH----HhcCCCEEEEEeCChHHHHHHHHHHHhhh
Q psy17742 292 SPIKVLDMGSGKGGDML---KW----INGGVKHVVFADIASVSIEDCKTRYEELK 339 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~---~l----a~~g~~~V~GIDiS~~mIe~A~er~~~~~ 339 (597)
...++||+-+|.|-.-. .+ .+.+ .++..+.+.....+...+.+....
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~-~rvLvL~PTRvva~em~~aL~~~~ 57 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRR-LRVLVLAPTRVVAEEMYEALKGLP 57 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT---EEEEESSHHHHHHHHHHTTTSS
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHcc-CeEEEecccHHHHHHHHHHHhcCC
Confidence 35689999999997432 22 2345 489999999998888877766554
No 448
>PRK08655 prephenate dehydrogenase; Provisional
Probab=31.81 E-value=3.2e+02 Score=30.47 Aligned_cols=99 Identities=14% Similarity=0.164 Sum_probs=52.4
Q ss_pred EEEEEC-CC-CCh-hHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 295 KVLDMG-SG-KGG-DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 295 rVLDLG-CG-tG~-~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
+|+=|| +| -|. ++..+...|. .|+++|.++......... .+. .+..+..+.+ ...|+|+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~~~~~~~a~~---~gv----------~~~~~~~e~~----~~aDvVI 63 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDPKKGKEVAKE---LGV----------EYANDNIDAA----KDADIVI 63 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHH---cCC----------eeccCHHHHh----ccCCEEE
Confidence 467786 56 344 3344555664 899999987654322111 111 1111111112 2378887
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR 418 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~ 418 (597)
..-.. .....+++.+...+++|..++-.......+...+.
T Consensus 64 lavp~-------~~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~ 103 (437)
T PRK08655 64 ISVPI-------NVTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAME 103 (437)
T ss_pred EecCH-------HHHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHH
Confidence 75333 34467788888888887744433322344444444
No 449
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.52 E-value=87 Score=31.05 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=34.8
Q ss_pred CCceeEEEEccchhhhcc----C----HHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 364 ALELDLVSCQFCIHYSFE----S----VQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 364 ~~sFDvVi~~~vLh~lFe----s----~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
.++.|+|+++++|+-+-- + .+++++++..+..+|+|+..+|..+..+
T Consensus 48 gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~P 102 (183)
T cd01842 48 GGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNTAMP 102 (183)
T ss_pred CCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCC
Confidence 367999999999876521 1 2467788888888888998888865444
No 450
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=31.29 E-value=2.3e+02 Score=29.41 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 384 QQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 384 ~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
+.-..+|..++..|.|||++++.-.+.
T Consensus 189 esT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 189 ESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 566789999999999999999987665
No 451
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=31.13 E-value=71 Score=30.80 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=55.6
Q ss_pred CCCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
.+.+|.=||+|. |.-+.+.++ .| .+|+++|.+...-..+.. .. .-..++.+.+ ...|+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG-~~V~~~d~~~~~~~~~~~----~~-----------~~~~~l~ell----~~aDi 94 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFG-MRVIGYDRSPKPEEGADE----FG-----------VEYVSLDELL----AQADI 94 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHH----TT-----------EEESSHHHHH----HH-SE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCC-ceeEEecccCChhhhccc----cc-----------ceeeehhhhc----chhhh
Confidence 578999999986 555555444 45 599999999885441111 10 1011122222 24788
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE----eCChhHHHHHHhh
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT----VPDSNQIMARYRR 419 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit----~pn~~~i~~~l~~ 419 (597)
|+....+.- +...-+=++....+|+|.+||=+ +.+.+.+.+.++.
T Consensus 95 v~~~~plt~-----~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 95 VSLHLPLTP-----ETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp EEE-SSSST-----TTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred hhhhhcccc-----ccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 887655311 11111224456788988877653 3445667666654
No 452
>PRK08324 short chain dehydrogenase; Validated
Probab=31.06 E-value=2.1e+02 Score=33.65 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=28.9
Q ss_pred CCCEEEEECCCCC--hhH-HHHHhcCCCEEEEEeCChHHHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKG--GDM-LKWINGGVKHVVFADIASVSIEDCKTRY 335 (597)
Q Consensus 292 ~~~rVLDLGCGtG--~~l-~~la~~g~~~V~GIDiS~~mIe~A~er~ 335 (597)
.+++||=.|++.| ..+ ..++..|. +|+++|.++..++.+.+..
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l 466 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAEL 466 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHH
Confidence 4578998886443 333 33556675 8999999988776655443
No 453
>PRK06128 oxidoreductase; Provisional
Probab=30.93 E-value=4.2e+02 Score=27.24 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCCh
Q psy17742 293 PIKVLDMGSGKGG---DMLKWINGGVKHVVFADIAS 325 (597)
Q Consensus 293 ~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~ 325 (597)
+++||=.|++.|. .+..++..|. +|+.+..+.
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~ 89 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA-DIALNYLPE 89 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCc
Confidence 5679999866543 4444666775 777776553
No 454
>PRK07063 short chain dehydrogenase; Provisional
Probab=30.85 E-value=3.5e+02 Score=26.78 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=31.4
Q ss_pred CCCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKTRYE 336 (597)
Q Consensus 292 ~~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~~mIe~A~er~~ 336 (597)
.+++||=.|++.|. .+..+++.|. +|+.++.++..++...+...
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~ 52 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIA 52 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHH
Confidence 35789999987653 4444677775 89999998887776665554
No 455
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=30.65 E-value=2e+02 Score=30.09 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=52.8
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||-+|+|. |..+..+++. |...|++++.++...+.+.+. . ...... .....+...+..... +.+|+
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g---~~~~~~-~~~~~~~~~~~~~~~---~~~d~ 246 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA-G---ADVVVN-GSDPDAAKRIIKAAG---GGVDA 246 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-C---CcEEec-CCCccHHHHHHHHhC---CCCcE
Confidence 467888888653 4444445543 555799999988877777442 1 110000 000001001111111 24899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+....- ...+..+.+.|+++|.++..
T Consensus 247 vid~~g~----------~~~~~~~~~~l~~~g~~v~~ 273 (350)
T cd08240 247 VIDFVNN----------SATASLAFDILAKGGKLVLV 273 (350)
T ss_pred EEECCCC----------HHHHHHHHHHhhcCCeEEEE
Confidence 8764211 13577778899999999854
No 456
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=30.57 E-value=96 Score=33.47 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=25.8
Q ss_pred CCEEEEECCCC-Chh-HHHHHhcCCCEEEEEeCCh
Q psy17742 293 PIKVLDMGSGK-GGD-MLKWINGGVKHVVFADIAS 325 (597)
Q Consensus 293 ~~rVLDLGCGt-G~~-l~~la~~g~~~V~GIDiS~ 325 (597)
..+||=+|||. |.. +..|+..|+.+++.+|.+.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 57899999995 544 4447788988999999875
No 457
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=30.03 E-value=1.8e+02 Score=31.73 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=25.0
Q ss_pred CCEEEEECCCC-ChhH-HHHHhcCCCEEEEEeCC
Q psy17742 293 PIKVLDMGSGK-GGDM-LKWINGGVKHVVFADIA 324 (597)
Q Consensus 293 ~~rVLDLGCGt-G~~l-~~la~~g~~~V~GIDiS 324 (597)
..+||=+|||. |..+ ..|+..|+.+++.+|.+
T Consensus 135 ~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 135 EARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred cCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46799999984 5544 44778898899999987
No 458
>KOG0821|consensus
Probab=29.97 E-value=93 Score=32.06 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=35.4
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKT 333 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~e 333 (597)
.+.-|.+||.|.|+.+..++.++...+..++++...+.-.+-
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~ 91 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQM 91 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHH
Confidence 357899999999999999999998888999988877665443
No 459
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=29.95 E-value=2.2e+02 Score=30.50 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=59.4
Q ss_pred CCCEEEEECCCC-Chh-HHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGD-MLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~-l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
.+.+|.=||+|. |.- +..+...| .+|++.|.++...... . .+..++.+.+ ...|+
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G-~~V~~~d~~~~~~~~~--------~----------~~~~~l~ell----~~aDi 201 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFG-ATITAYDAYPNKDLDF--------L----------TYKDSVKEAI----KDADI 201 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEeCChhHhhhh--------h----------hccCCHHHHH----hcCCE
Confidence 467899999998 443 34455556 4999999987532110 0 1111122222 23688
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE----eCChhHHHHHHhh
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT----VPDSNQIMARYRR 419 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit----~pn~~~i~~~l~~ 419 (597)
|+..-.+ +.+....+.+.+...+|+|.+||-+ +.+.+.+...|..
T Consensus 202 Vil~lP~-----t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~ 250 (330)
T PRK12480 202 ISLHVPA-----NKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVND 250 (330)
T ss_pred EEEeCCC-----cHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHc
Confidence 8775433 2233445667888899998877754 3455677776654
No 460
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=29.69 E-value=2.3e+02 Score=26.69 Aligned_cols=90 Identities=16% Similarity=0.129 Sum_probs=51.1
Q ss_pred EEEEECCCC-Ch-hHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEE
Q psy17742 295 KVLDMGSGK-GG-DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSC 372 (597)
Q Consensus 295 rVLDLGCGt-G~-~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~ 372 (597)
+|-=||+|. |. .+..|++.|+ .|++.|.++..++.+.+.. . ....+..+.. ...|+|+.
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g----~----------~~~~s~~e~~----~~~dvvi~ 63 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAG----A----------EVADSPAEAA----EQADVVIL 63 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTT----E----------EEESSHHHHH----HHBSEEEE
T ss_pred EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhh----h----------hhhhhhhhHh----hcccceEe
Confidence 466678876 32 4455777785 8999999987666555431 1 1111111111 13588876
Q ss_pred ccchhhhccCHHHHHHHHHH--HHHhccCCcEEEEEeCC
Q psy17742 373 QFCIHYSFESVQQARCMLKN--AAECLKPGGFFVGTVPD 409 (597)
Q Consensus 373 ~~vLh~lFes~~d~~~~L~~--i~rlLKPGG~fIit~pn 409 (597)
. + .+....+.++.. +...|++|..++-....
T Consensus 64 ~--v----~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~ 96 (163)
T PF03446_consen 64 C--V----PDDDAVEAVLFGENILAGLRPGKIIIDMSTI 96 (163)
T ss_dssp ---S----SSHHHHHHHHHCTTHGGGS-TTEEEEE-SS-
T ss_pred e--c----ccchhhhhhhhhhHHhhccccceEEEecCCc
Confidence 4 2 334667788888 88899888777755433
No 461
>KOG1269|consensus
Probab=29.58 E-value=72 Score=34.92 Aligned_cols=46 Identities=11% Similarity=-0.077 Sum_probs=35.5
Q ss_pred CCCEEEEECCCCChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHh
Q psy17742 292 SPIKVLDMGSGKGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEE 337 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~ 337 (597)
...++||.+|+.+.....++.. +..+--|+++..+.+..+..+...
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~ 226 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPN 226 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCC
Confidence 4679999999999888776654 345667999999998888766444
No 462
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=29.57 E-value=3.4e+02 Score=27.76 Aligned_cols=86 Identities=10% Similarity=0.134 Sum_probs=43.4
Q ss_pred CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEEEccc---------hhhhccCHHHH
Q psy17742 316 KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFC---------IHYSFESVQQA 386 (597)
Q Consensus 316 ~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi~~~v---------Lh~lFes~~d~ 386 (597)
.+++.+|++++.++.....+....... . ........+..+.+. ..|+|+.... +..+..+.+-.
T Consensus 27 ~el~L~D~~~~~l~~~~~dl~~~~~~~-~--~~~i~~~~d~~~~~~----~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~ 99 (263)
T cd00650 27 IELVLYDIDEEKLKGVAMDLQDAVEPL-A--DIKVSITDDPYEAFK----DADVVIITAGVGRKPGMGRLDLLKRNVPIV 99 (263)
T ss_pred eEEEEEeCCcccchHHHHHHHHhhhhc-c--CcEEEECCchHHHhC----CCCEEEECCCCCCCcCCCHHHHHHHHHHHH
Confidence 589999999876665544433322111 0 000011122223332 2788888432 11222233445
Q ss_pred HHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 387 RCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 387 ~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
..+.+.+.+.- |.|+++..+ |+
T Consensus 100 ~~i~~~i~~~~-p~a~~i~~t-NP 121 (263)
T cd00650 100 KEIGDNIEKYS-PDAWIIVVS-NP 121 (263)
T ss_pred HHHHHHHHHHC-CCeEEEEec-Cc
Confidence 55666666654 899887765 55
No 463
>KOG0023|consensus
Probab=29.45 E-value=1.9e+02 Score=31.43 Aligned_cols=98 Identities=16% Similarity=0.048 Sum_probs=55.5
Q ss_pred CCCCEEEEECC-CCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccccccee-ehhhhccCCC-CCCce
Q psy17742 291 GSPIKVLDMGS-GKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF-SAELRSQYED-KALEL 367 (597)
Q Consensus 291 ~~~~rVLDLGC-GtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F-~~dl~e~l~~-~~~sF 367 (597)
+++.+|-=+|. |-|..+.+++++-..+|+++|-+..--+.|-+++.. .... +.+ +.+....+.. -++-.
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGA---d~fv-----~~~~d~d~~~~~~~~~dg~~ 251 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGA---DVFV-----DSTEDPDIMKAIMKTTDGGI 251 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCc---ceeE-----EecCCHHHHHHHHHhhcCcc
Confidence 36677666664 468888888887546999999998665665554322 2111 122 1222211111 01224
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeC
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~p 408 (597)
|.|+.. +- ..|..+.++||++|.+++.-.
T Consensus 252 ~~v~~~-a~-----------~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 252 DTVSNL-AE-----------HALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred eeeeec-cc-----------cchHHHHHHhhcCCEEEEEeC
Confidence 444432 22 235567789999999987643
No 464
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=29.39 E-value=1.6e+02 Score=31.13 Aligned_cols=87 Identities=16% Similarity=0.231 Sum_probs=49.2
Q ss_pred CCCEEEEECCCC-ChhHHH-HHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceee-hhhhccCCCCCCcee
Q psy17742 292 SPIKVLDMGSGK-GGDMLK-WINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFS-AELRSQYEDKALELD 368 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~-la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~-~dl~e~l~~~~~sFD 368 (597)
.+.+|+=||+|. |..+.. +...| .+|+.+|.++...+.++. .+.. ... .++.+.+ ..+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G-a~V~v~~r~~~~~~~~~~----~G~~---------~~~~~~l~~~l----~~aD 212 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG-ANVTVGARKSAHLARITE----MGLS---------PFHLSELAEEV----GKID 212 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH----cCCe---------eecHHHHHHHh----CCCC
Confidence 468999999986 333333 44456 499999999775544432 1111 111 1122222 2489
Q ss_pred EEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 369 LVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 369 vVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
+|+..-..+ .+-+.+.+.++||++++=.
T Consensus 213 iVI~t~p~~----------~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 213 IIFNTIPAL----------VLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred EEEECCChh----------hhhHHHHHcCCCCcEEEEE
Confidence 998742111 1234556778998877643
No 465
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=29.19 E-value=1.1e+02 Score=33.11 Aligned_cols=33 Identities=27% Similarity=0.386 Sum_probs=25.7
Q ss_pred CCEEEEECCCC-Ch-hHHHHHhcCCCEEEEEeCCh
Q psy17742 293 PIKVLDMGSGK-GG-DMLKWINGGVKHVVFADIAS 325 (597)
Q Consensus 293 ~~rVLDLGCGt-G~-~l~~la~~g~~~V~GIDiS~ 325 (597)
..+||=+|||. |. .+..|+..|+.+++.+|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 57899999994 54 44447788988999999864
No 466
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=28.07 E-value=97 Score=38.99 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=51.8
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhh-hhhccccccccceeehhh-hccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL-KRKEEARPYRRNVFSAEL-RSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~-~~~~~~~~~~~d~F~~dl-~e~l~~~~~sFDv 369 (597)
.+..+||+|.|.-.=...+.... .-|+.+|+=|-. ... ..... -.+...|. ...+ .....+|.
T Consensus 822 ~~~~~lDLGTGPE~RiLsliP~~-~pvtmvD~RP~a--------e~m~~w~t~-----T~y~~~DYl~~~~-~~~~~~D~ 886 (1289)
T PF06016_consen 822 DPDHWLDLGTGPECRILSLIPPD-TPVTMVDTRPFA--------EPMNCWNTQ-----TQYIQADYLSDAW-WNGTPFDA 886 (1289)
T ss_dssp CC-CEEEET--TT-CHHHCS-TT-SEEEEEESS--S--------SSCCCCSTT-----EEEEES-TTSCCG-GCC---SE
T ss_pred CcceEEEccCCccceeeeccCCC-CceEEEecCCcc--------cccchhhhc-----ceeeeecccccee-EecCCCCE
Confidence 35789999998765444444444 479999986532 100 00111 11334441 1111 12346999
Q ss_pred EEEccchhhhc-cCHHHHHHHHHHHHHhccCCc--EEEEE
Q psy17742 370 VSCQFCIHYSF-ESVQQARCMLKNAAECLKPGG--FFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lF-es~~d~~~~L~~i~rlLKPGG--~fIit 406 (597)
+.|.++|...+ ...-++...|+++.+.+++.| ++++.
T Consensus 887 vtailSLGAAaA~a~~tl~~~l~~~l~~~~~~~~~~l~lQ 926 (1289)
T PF06016_consen 887 VTAILSLGAAAASANVTLDAGLQQFLSQCVQANVKRLWLQ 926 (1289)
T ss_dssp EEECTCHHHHHHHCT--HHHHHHHHHHHHHCTT-SEEEEE
T ss_pred EEEEeeehhhhhcCCCcHHHHHHHHHHHHHhCCccEEEEE
Confidence 99999987753 223467888999998888877 34444
No 467
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=27.84 E-value=5.7e+02 Score=26.75 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=29.8
Q ss_pred EEEEECCCC-C-hhHHHHHhcCCCEEEEEeCChHHHHHHHHHH
Q psy17742 295 KVLDMGSGK-G-GDMLKWINGGVKHVVFADIASVSIEDCKTRY 335 (597)
Q Consensus 295 rVLDLGCGt-G-~~l~~la~~g~~~V~GIDiS~~mIe~A~er~ 335 (597)
+|.=||+|. | .++..++..|. +|+++|.++..++.+..+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~~~~~~~~~~~ 45 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADPAAAAAAPAYI 45 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCHHHHHHHHHHH
Confidence 588889885 3 34455667775 8999999999888877653
No 468
>PRK08818 prephenate dehydrogenase; Provisional
Probab=27.75 E-value=8.1e+02 Score=26.92 Aligned_cols=88 Identities=15% Similarity=0.029 Sum_probs=49.5
Q ss_pred CCEEEEECC-CC-Chh-HHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 293 PIKVLDMGS-GK-GGD-MLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 293 ~~rVLDLGC-Gt-G~~-l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
..+|+=||. |- |+. +..+.+....+|+|+|..... .. +..+.+ ...|+
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-----------------------~~--~~~~~v----~~aDl 54 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-----------------------SL--DPATLL----QRADV 54 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-----------------------cC--CHHHHh----cCCCE
Confidence 367999998 74 444 444443323489999984110 00 001111 23799
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHh---ccCCcEEEEEeCCh-hHHHHHH
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAEC---LKPGGFFVGTVPDS-NQIMARY 417 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rl---LKPGG~fIit~pn~-~~i~~~l 417 (597)
|+..--+ .....+++++... |+||. +|..+-+. ..+...+
T Consensus 55 VilavPv-------~~~~~~l~~l~~~~~~l~~~~-iVtDVgSvK~~i~~~~ 98 (370)
T PRK08818 55 LIFSAPI-------RHTAALIEEYVALAGGRAAGQ-LWLDVTSIKQAPVAAM 98 (370)
T ss_pred EEEeCCH-------HHHHHHHHHHhhhhcCCCCCe-EEEECCCCcHHHHHHH
Confidence 8776444 5567788888876 67754 45544443 4455544
No 469
>PRK08507 prephenate dehydrogenase; Validated
Probab=27.63 E-value=3.8e+02 Score=27.53 Aligned_cols=98 Identities=12% Similarity=0.125 Sum_probs=54.7
Q ss_pred EEEEECCCC--ChhHHHHHhcCC-CEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEEE
Q psy17742 295 KVLDMGSGK--GGDMLKWINGGV-KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVS 371 (597)
Q Consensus 295 rVLDLGCGt--G~~l~~la~~g~-~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvVi 371 (597)
+|.=||+|. |.++..+.+.|. ..|+++|.++..++.+.+. +... .. .+.. .+. ..|+|+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~----g~~~--------~~-~~~~-~~~----~aD~Vi 63 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL----GLVD--------EI-VSFE-ELK----KCDVIF 63 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC----CCCc--------cc-CCHH-HHh----cCCEEE
Confidence 466678886 335555666663 3799999999877665431 1100 01 0111 111 268887
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHHHHHh
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR 418 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~~~l~ 418 (597)
..-.. .....++.++.. +++|..++-.......+...+.
T Consensus 64 lavp~-------~~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~ 102 (275)
T PRK08507 64 LAIPV-------DAIIEILPKLLD-IKENTTIIDLGSTKAKIIESVP 102 (275)
T ss_pred EeCcH-------HHHHHHHHHHhc-cCCCCEEEECccchHHHHHHHH
Confidence 65322 455677788888 8887755432222344544443
No 470
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=27.60 E-value=3.3e+02 Score=28.55 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=26.7
Q ss_pred CCCEEEEECCCC-ChhHHH-HHhcCCCEEEEEeCChH
Q psy17742 292 SPIKVLDMGSGK-GGDMLK-WINGGVKHVVFADIASV 326 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~-la~~g~~~V~GIDiS~~ 326 (597)
.+.+||=+|||. |..+.. |+..|+.+++.+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence 357899999994 665555 67788889999997643
No 471
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=27.47 E-value=2.2e+02 Score=29.58 Aligned_cols=93 Identities=11% Similarity=-0.012 Sum_probs=52.4
Q ss_pred CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh---hhhccCCCCCCce
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA---ELRSQYEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~---dl~e~l~~~~~sF 367 (597)
++.+||=.|||. |..+..+++....+++.++.++..++.+++. . ... .+.. +....+... ..+
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~-g---~~~--------~i~~~~~~~~~~~~~~-~~~ 229 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKL-G---AHH--------YIDTSKEDVAEALQEL-GGA 229 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc-C---CcE--------EecCCCccHHHHHHhc-CCC
Confidence 467898888653 4444445554334899999998877777442 1 110 1110 111111001 238
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+|+....- ...+..+.+.|+++|.++..-
T Consensus 230 d~vi~~~g~----------~~~~~~~~~~l~~~G~~v~~g 259 (333)
T cd08296 230 KLILATAPN----------AKAISALVGGLAPRGKLLILG 259 (333)
T ss_pred CEEEECCCc----------hHHHHHHHHHcccCCEEEEEe
Confidence 888753110 135677788999999998653
No 472
>PRK05872 short chain dehydrogenase; Provisional
Probab=27.39 E-value=4e+02 Score=27.37 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=29.9
Q ss_pred CCCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCChHHHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKTRY 335 (597)
Q Consensus 292 ~~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~~mIe~A~er~ 335 (597)
.+.+||=.|++.|. .+..+++.|. +|+.++.++..++...+..
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l 53 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAEL 53 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh
Confidence 45789999877653 3344666775 8999999988776655443
No 473
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=27.16 E-value=7.2e+02 Score=27.92 Aligned_cols=135 Identities=17% Similarity=0.247 Sum_probs=68.9
Q ss_pred CCEEEEECCCC-Ch-hHHHHHhcCCCEEEEEeCChHHHHHHHHHHH---hhhhhcc-ccccccceeehhhhccCCCCCCc
Q psy17742 293 PIKVLDMGSGK-GG-DMLKWINGGVKHVVFADIASVSIEDCKTRYE---ELKRKEE-ARPYRRNVFSAELRSQYEDKALE 366 (597)
Q Consensus 293 ~~rVLDLGCGt-G~-~l~~la~~g~~~V~GIDiS~~mIe~A~er~~---~~~~~~~-~~~~~~d~F~~dl~e~l~~~~~s 366 (597)
..+|-=+|=|- |. ++..+++.|+ +|+|+||++.-++...+--. +...... ........|.+. .....- ..
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~G~-~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraT--td~~~l-~~ 84 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASAGF-KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRAT--TDPEEL-KE 84 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHcCC-ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEe--cChhhc-cc
Confidence 36677777775 33 3334677775 89999999998877654211 0000000 000000011110 001100 13
Q ss_pred eeEEE-Eccc-hh-hhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh----hHHHHH-HhhhccCccCCceEE
Q psy17742 367 LDLVS-CQFC-IH-YSFESVQQARCMLKNAAECLKPGGFFVGTVPDS----NQIMAR-YRRHQSASFGNDVYQ 431 (597)
Q Consensus 367 FDvVi-~~~v-Lh-~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~----~~i~~~-l~~~~~~~fgN~vy~ 431 (597)
.|+++ |--+ +. +-=.+..-...+.+.+...|++|-.+++....+ +.+..- +....+..++.++|-
T Consensus 85 ~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~l 157 (436)
T COG0677 85 CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYL 157 (436)
T ss_pred CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeE
Confidence 56643 3222 11 111233456788999999999999988864332 444443 343356777766654
No 474
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=27.16 E-value=2e+02 Score=30.53 Aligned_cols=100 Identities=18% Similarity=0.084 Sum_probs=52.7
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=+|+|. |..+..+++. |..+|+++|.++.-++.+++. .......... ....+...+. .+.. +.+|+
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~-ga~~~i~~~~--~~~~~~~~~~-~~~~--~g~d~ 257 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF-GATDFINPKD--SDKPVSEVIR-EMTG--GGVDY 257 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc-CCCcEecccc--ccchHHHHHH-HHhC--CCCCE
Confidence 578898888753 3344444443 555799999998888777542 1100000000 0000000011 1112 34898
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCC-cEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPG-GFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPG-G~fIit~ 407 (597)
|+-.-.- ...+....+.|++| |.++..-
T Consensus 258 vid~~g~----------~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 258 SFECTGN----------ADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred EEECCCC----------hHHHHHHHHhcccCCCEEEEEc
Confidence 8753111 13566777889886 8887653
No 475
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=27.14 E-value=5.4e+02 Score=25.82 Aligned_cols=43 Identities=14% Similarity=0.032 Sum_probs=28.8
Q ss_pred CCCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCChHHHHHHHHHH
Q psy17742 292 SPIKVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKTRY 335 (597)
Q Consensus 292 ~~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~~mIe~A~er~ 335 (597)
.+++||=.|++.|. .+..+++.|. .|+.++.+....+...+.+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~ 54 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEI 54 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH
Confidence 35678888876543 3344666775 8999999877665554444
No 476
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=26.77 E-value=1.8e+02 Score=31.26 Aligned_cols=102 Identities=12% Similarity=0.075 Sum_probs=52.3
Q ss_pred CCCEEEEECCCC-ChhHHHHHh-cCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWIN-GGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~-~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|+|. |..+..+++ .|...|++++.++...+.+++.....-..... .....+...+...... ..+|+
T Consensus 203 ~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~--~~~~~~~~~v~~~~~g--~gvDv 278 (384)
T cd08265 203 PGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTK--MRDCLSGEKVMEVTKG--WGADI 278 (384)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccc--cccccHHHHHHHhcCC--CCCCE
Confidence 567788777753 333344444 35447999999887665555421100000000 0000011111222221 34899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+.... .....+..+.++|+++|.++..
T Consensus 279 vld~~g---------~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 279 QVEAAG---------APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred EEECCC---------CcHHHHHHHHHHHHcCCEEEEE
Confidence 986421 1124566778889999999864
No 477
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=26.22 E-value=2.8e+02 Score=28.54 Aligned_cols=88 Identities=14% Similarity=-0.001 Sum_probs=49.9
Q ss_pred CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
++.+||=.|||. |..+..+++....++++++.++...+.+++ + +... .+... ..+ ...+|++
T Consensus 167 ~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~---g~~~--------~~~~~---~~~--~~~vD~v 229 (329)
T cd08298 167 PGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-L---GADW--------AGDSD---DLP--PEPLDAA 229 (329)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-h---CCcE--------EeccC---ccC--CCcccEE
Confidence 456777787763 223333444433589999988876666633 2 1110 11110 111 2348887
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
+..... ...+..+.++|++||.++..
T Consensus 230 i~~~~~----------~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 230 IIFAPV----------GALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred EEcCCc----------HHHHHHHHHHhhcCCEEEEE
Confidence 643111 13678889999999999864
No 478
>PRK07109 short chain dehydrogenase; Provisional
Probab=26.06 E-value=4.5e+02 Score=27.83 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=29.5
Q ss_pred CCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCChHHHHHHHHHHH
Q psy17742 293 PIKVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKTRYE 336 (597)
Q Consensus 293 ~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~~mIe~A~er~~ 336 (597)
+.+||=.|++.|. .+..++..|. +|+.++.++..++...+...
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~ 53 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIR 53 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHH
Confidence 4678888876543 3344666775 89999998877766655444
No 479
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=26.02 E-value=2e+02 Score=29.86 Aligned_cols=98 Identities=17% Similarity=0.084 Sum_probs=51.7
Q ss_pred CCCEEEEECCCC-ChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=+|+|. |..+..+++. |..++++++-++...+.+++. +...... ... .+...+....+. ..+|+
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~----g~~~~~~-~~~-~~~~~i~~~~~~--~~~dv 238 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERL----GADHVLN-ASD-DVVEEVRELTGG--RGADA 238 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHh----CCcEEEc-CCc-cHHHHHHHHhCC--CCCCE
Confidence 467888888653 3333344443 425889999888776655331 1110000 000 011111111111 24899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+..-.- ...+..+.+.|+++|.++...
T Consensus 239 vld~~g~----------~~~~~~~~~~l~~~g~~i~~g 266 (340)
T cd05284 239 VIDFVGS----------DETLALAAKLLAKGGRYVIVG 266 (340)
T ss_pred EEEcCCC----------HHHHHHHHHHhhcCCEEEEEc
Confidence 8763211 134677788899999998653
No 480
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=25.87 E-value=6.9e+02 Score=28.05 Aligned_cols=38 Identities=18% Similarity=0.210 Sum_probs=26.1
Q ss_pred EEEEECCCCChhHHHHHh--------cCCCEEEEEeCChHHHHHHHH
Q psy17742 295 KVLDMGSGKGGDMLKWIN--------GGVKHVVFADIASVSIEDCKT 333 (597)
Q Consensus 295 rVLDLGCGtG~~l~~la~--------~g~~~V~GIDiS~~mIe~A~e 333 (597)
+|-=||.|+. ++..+.. .+..+++-+||+++.++....
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~ 47 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAE 47 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHH
Confidence 4667898886 5544322 234799999999988776444
No 481
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=25.86 E-value=2.6e+02 Score=27.87 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=52.5
Q ss_pred CCCEEEEECC--CCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGS--GKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGC--GtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|+ +.|..+..+++.....+++++.++...+.+++. +...... .....+...+..... ...+|+
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~~~~~-~~~~~~~~~~~~~~~--~~~~d~ 208 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAA----GADHVIN-YRDEDFVERVREITG--GRGVDV 208 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHC----CCCEEEe-CCchhHHHHHHHHcC--CCCeeE
Confidence 4678888884 345566666655435899999888877766431 1110000 000001011111111 234899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+.... . ..+..+.++|+++|.++..
T Consensus 209 vl~~~~---------~--~~~~~~~~~l~~~g~~v~~ 234 (320)
T cd05286 209 VYDGVG---------K--DTFEGSLDSLRPRGTLVSF 234 (320)
T ss_pred EEECCC---------c--HhHHHHHHhhccCcEEEEE
Confidence 876421 1 2455677889999998864
No 482
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.64 E-value=5.8e+02 Score=25.91 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=22.9
Q ss_pred CCEEEEECCCC--C--h-hHHHHHhcCCCEEEEEeCChH
Q psy17742 293 PIKVLDMGSGK--G--G-DMLKWINGGVKHVVFADIASV 326 (597)
Q Consensus 293 ~~rVLDLGCGt--G--~-~l~~la~~g~~~V~GIDiS~~ 326 (597)
++.+|=.|++. | . .+..|++.|. +|+.++.+..
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~ 44 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEA 44 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchH
Confidence 56789999764 3 3 4455777785 8888887654
No 483
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=25.61 E-value=4.7e+02 Score=25.32 Aligned_cols=101 Identities=12% Similarity=0.041 Sum_probs=60.8
Q ss_pred CCCEEEEECCCCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCC-CCCceeEE
Q psy17742 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYED-KALELDLV 370 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~-~~~sFDvV 370 (597)
...+|+=|||=+-....+-......+++..|++... ...+..... +|+-.-...++. -.++||+|
T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF--------~~~~~~~F~------fyD~~~p~~~~~~l~~~~d~v 90 (162)
T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRF--------EQFGGDEFV------FYDYNEPEELPEELKGKFDVV 90 (162)
T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchH--------HhcCCcceE------ECCCCChhhhhhhcCCCceEE
Confidence 457899999987655544311223488999998653 322211111 232221111211 13579999
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCCh
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDS 410 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~ 410 (597)
++=--+ .+++-+......+..++|+++.++++++..
T Consensus 91 v~DPPF----l~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 91 VIDPPF----LSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred EECCCC----CCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 986444 245666777888888889999999888655
No 484
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=25.54 E-value=2.2e+02 Score=29.42 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=22.5
Q ss_pred CCC-CChhHHHHHhcCCCEEEEEeCChHHHHHHHH
Q psy17742 300 GSG-KGGDMLKWINGGVKHVVFADIASVSIEDCKT 333 (597)
Q Consensus 300 GCG-tG~~l~~la~~g~~~V~GIDiS~~mIe~A~e 333 (597)
|+| .|..+..+++....++++++.++.-.+.+++
T Consensus 152 g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~ 186 (324)
T cd08291 152 AASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK 186 (324)
T ss_pred CccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 444 3555555665433489999999887777765
No 485
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=25.27 E-value=5.1e+02 Score=30.36 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=59.6
Q ss_pred CCEEEEECCCC-ChhHHH-HHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeEE
Q psy17742 293 PIKVLDMGSGK-GGDMLK-WINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLV 370 (597)
Q Consensus 293 ~~rVLDLGCGt-G~~l~~-la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDvV 370 (597)
..+|+=+|||. |..... +.+.+. .++.+|.+++.++.+++. +.. .+.+|.-+.+..+...- .+.|+|
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~----g~~----v~~GDat~~~~L~~agi--~~A~~v 468 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF----GMK----VFYGDATRMDLLESAGA--AKAEVL 468 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc----CCe----EEEEeCCCHHHHHhcCC--CcCCEE
Confidence 46799999997 554444 444564 899999999999888652 111 11222333332222222 247777
Q ss_pred EEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCChhHHH
Q psy17742 371 SCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM 414 (597)
Q Consensus 371 i~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn~~~i~ 414 (597)
++.. .+ ++....+-...+.+.|.-.++....+.....
T Consensus 469 vv~~------~d-~~~n~~i~~~ar~~~p~~~iiaRa~d~~~~~ 505 (621)
T PRK03562 469 INAI------DD-PQTSLQLVELVKEHFPHLQIIARARDVDHYI 505 (621)
T ss_pred EEEe------CC-HHHHHHHHHHHHHhCCCCeEEEEECCHHHHH
Confidence 7642 22 2222333344555678878888777775543
No 486
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=25.27 E-value=2.7e+02 Score=28.57 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=50.7
Q ss_pred EEEEECCCCCh--hHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceee-hhhhccCCCCCCceeEEE
Q psy17742 295 KVLDMGSGKGG--DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFS-AELRSQYEDKALELDLVS 371 (597)
Q Consensus 295 rVLDLGCGtG~--~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~-~dl~e~l~~~~~sFDvVi 371 (597)
+|+=||+|.-+ ++..|...| .+|+.++.++..++..++.... .. . +.... .......... ..+|+|+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~~~~~~~~~~~g~~--~~-~-----~~~~~~~~~~~~~~~~-~~~d~vi 71 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARRGAHLDALNENGLR--LE-D-----GEITVPVLAADDPAEL-GPQDLVI 71 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEECChHHHHHHHHcCCc--cc-C-----CceeecccCCCChhHc-CCCCEEE
Confidence 58889998743 334456666 4899999877766555432110 00 0 00000 0000111111 3589887
Q ss_pred EccchhhhccCHHHHHHHHHHHHHhccCCcEEEE
Q psy17742 372 CQFCIHYSFESVQQARCMLKNAAECLKPGGFFVG 405 (597)
Q Consensus 372 ~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIi 405 (597)
..--- .+...+++.+...+.++..++.
T Consensus 72 la~k~-------~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 72 LAVKA-------YQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred Eeccc-------ccHHHHHHHHhhhcCCCCEEEE
Confidence 64221 2456778888888887766554
No 487
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=25.04 E-value=1.4e+02 Score=34.00 Aligned_cols=88 Identities=16% Similarity=0.085 Sum_probs=51.4
Q ss_pred CCCEEEEECCCCChhHHH--HHhcCCCEEE------EEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCC
Q psy17742 292 SPIKVLDMGSGKGGDMLK--WINGGVKHVV------FADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDK 363 (597)
Q Consensus 292 ~~~rVLDLGCGtG~~l~~--la~~g~~~V~------GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~ 363 (597)
.+++|+=||||.=+.+.. +...|+ .|+ +||......+.|.+. +.. . .++.+.+
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGv-nVvvglr~~~id~~~~s~~kA~~d----GF~---------v--~~~~Ea~--- 95 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGL-DISYALRKEAIAEKRASWRKATEN----GFK---------V--GTYEELI--- 95 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccc-eeEEeccccccccccchHHHHHhc----CCc---------c--CCHHHHH---
Confidence 478999999998554433 223344 444 445555555554432 110 1 1122222
Q ss_pred CCceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 364 ALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 364 ~~sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
...|+|++.-.. . ....+.+++...||||..|.++
T Consensus 96 -~~ADvVviLlPD------t-~q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 96 -PQADLVINLTPD------K-QHSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred -HhCCEEEEcCCh------H-HHHHHHHHHHhhCCCCCEEEec
Confidence 247888775322 2 3455669999999999999775
No 488
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=24.94 E-value=3.2e+02 Score=27.57 Aligned_cols=94 Identities=20% Similarity=0.125 Sum_probs=53.6
Q ss_pred CCCEEEEECC--CCChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGS--GKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGC--GtG~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|+ +.|..+..+++.....|+++..++...+.+++. +..... .....+...+. .+ ...+|+
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~~~~--~~~~~~~~~i~-~~---~~~~d~ 211 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKEL----GADEVV--IDDGAIAEQLR-AA---PGGFDK 211 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCcEEE--ecCccHHHHHH-Hh---CCCceE
Confidence 4678888886 346666666665445899999998776666431 111000 00001111111 12 235999
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+.... . ..+..+.++|+++|.++..
T Consensus 212 vl~~~~---------~--~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 212 VLELVG---------T--ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred EEECCC---------h--HHHHHHHHHhccCCEEEEE
Confidence 876421 1 3467778999999998764
No 489
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.79 E-value=6.2e+02 Score=24.59 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=28.1
Q ss_pred CCEEEEECCCC--Ch-hHHHHHhcCCCEEEEEeCChHHHHHHHHHH
Q psy17742 293 PIKVLDMGSGK--GG-DMLKWINGGVKHVVFADIASVSIEDCKTRY 335 (597)
Q Consensus 293 ~~rVLDLGCGt--G~-~l~~la~~g~~~V~GIDiS~~mIe~A~er~ 335 (597)
+.+||=+|++. |. .+..+++.|. +|++++-++..++.+....
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~ 49 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEI 49 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH
Confidence 46788888754 33 3334666675 7999999987666554443
No 490
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=24.64 E-value=2e+02 Score=29.82 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=51.6
Q ss_pred CCCEEEEECCC-CChhHHHHHhc-CCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSG-KGGDMLKWING-GVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCG-tG~~l~~la~~-g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
++.+||=.|+| .|..+..+++. |...+++++-++...+.+.+ +. ...... .....+...+...... ..+|+
T Consensus 165 ~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~-~g---~~~~~~-~~~~~~~~~i~~~~~~--~~vd~ 237 (343)
T cd08235 165 PGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK-LG---ADYTID-AAEEDLVEKVRELTDG--RGADV 237 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH-hC---CcEEec-CCccCHHHHHHHHhCC--cCCCE
Confidence 56788888865 34444455544 44338899888887776643 21 110000 0000011111111221 34899
Q ss_pred EEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEE
Q psy17742 370 VSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit 406 (597)
|+....- ...+..+.+.|+++|.++..
T Consensus 238 vld~~~~----------~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 238 VIVATGS----------PEAQAQALELVRKGGRILFF 264 (343)
T ss_pred EEECCCC----------hHHHHHHHHHhhcCCEEEEE
Confidence 8754211 13566677889999999864
No 491
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=24.51 E-value=7.6e+02 Score=27.55 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=25.6
Q ss_pred EEEEECCCCChhHHHHHh--------cCCCEEEEEeCChHHHHHHH
Q psy17742 295 KVLDMGSGKGGDMLKWIN--------GGVKHVVFADIASVSIEDCK 332 (597)
Q Consensus 295 rVLDLGCGtG~~l~~la~--------~g~~~V~GIDiS~~mIe~A~ 332 (597)
+|-=||.|+. ++..+.. ....+++.+|++++-++...
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~ 46 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIIL 46 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHH
Confidence 4667898886 5554332 23479999999998777533
No 492
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=24.17 E-value=1.5e+02 Score=31.03 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=28.6
Q ss_pred CCEEEEECCCC-ChhHHH-HHhcCCCEEEEEeCChHHHH
Q psy17742 293 PIKVLDMGSGK-GGDMLK-WINGGVKHVVFADIASVSIE 329 (597)
Q Consensus 293 ~~rVLDLGCGt-G~~l~~-la~~g~~~V~GIDiS~~mIe 329 (597)
..+|+=+|+|. |.|+.. |++.|+.+++-||.....+.
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vT 68 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVT 68 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccccccc
Confidence 46799999874 777665 77889889999998776653
No 493
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=24.07 E-value=6e+02 Score=28.77 Aligned_cols=106 Identities=17% Similarity=0.224 Sum_probs=56.0
Q ss_pred CEEEEECCCC--ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhh-----cccccccc-ceeehhhhccCCCCCC
Q psy17742 294 IKVLDMGSGK--GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK-----EEARPYRR-NVFSAELRSQYEDKAL 365 (597)
Q Consensus 294 ~rVLDLGCGt--G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~-----~~~~~~~~-d~F~~dl~e~l~~~~~ 365 (597)
.+|-=||+|. +.++..++..|. .|+..|.+++.++...+........ .......+ ..+..++.+.+ .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~----~ 79 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAV----A 79 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHh----c
Confidence 3577789985 345666777785 8999999999887654322110000 00000000 01222222122 2
Q ss_pred ceeEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy17742 366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409 (597)
Q Consensus 366 sFDvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~pn 409 (597)
..|+|+..- .+..+-...++..+...++|+.+|..++..
T Consensus 80 ~aD~Vieav-----pe~~~vk~~l~~~l~~~~~~~~iI~SsTsg 118 (495)
T PRK07531 80 GADWIQESV-----PERLDLKRRVLAEIDAAARPDALIGSSTSG 118 (495)
T ss_pred CCCEEEEcC-----cCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence 368887541 233344556778888888877554444433
No 494
>PRK09072 short chain dehydrogenase; Provisional
Probab=23.96 E-value=6.1e+02 Score=25.18 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=28.8
Q ss_pred CCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCChHHHHHHHHH
Q psy17742 293 PIKVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKTR 334 (597)
Q Consensus 293 ~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~~mIe~A~er 334 (597)
+.+||=.|++.|. .+..++..|. +|++++.++..++.....
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~ 48 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAAR 48 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH
Confidence 4678888876543 4444667775 899999998777665544
No 495
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=23.94 E-value=6.5e+02 Score=27.84 Aligned_cols=107 Identities=13% Similarity=0.078 Sum_probs=54.3
Q ss_pred CEEEEECCCCChh--HHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhcccccccccee----ehhhhccCCCCCCce
Q psy17742 294 IKVLDMGSGKGGD--MLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF----SAELRSQYEDKALEL 367 (597)
Q Consensus 294 ~rVLDLGCGtG~~--l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F----~~dl~e~l~~~~~sF 367 (597)
.+|.=||.|.-+. +..+++.|. +|+|+|+++..++..+...... ........+ ..+....... ....
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~~~~-----~e~~l~~~l~~~~~~g~l~~~~~-~~~a 76 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGEIHI-----VEPDLDMVVKTAVEGGYLRATTT-PEPA 76 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCCCCc-----CCCCHHHHHHHHhhcCceeeecc-cccC
Confidence 4577889986543 333667774 8999999999877533210000 000000000 0000000000 1136
Q ss_pred eEEEEccchhh---hccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 368 DLVSCQFCIHY---SFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 368 DvVi~~~vLh~---lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+|+..-.--. --.+......+++.+...|++|-.++...
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~S 119 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILES 119 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 77765422200 00011456677889999999988776643
No 496
>PRK06181 short chain dehydrogenase; Provisional
Probab=23.86 E-value=4.1e+02 Score=26.33 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=25.6
Q ss_pred CEEEEECCCCC--h-hHHHHHhcCCCEEEEEeCChHHHHHHHHHH
Q psy17742 294 IKVLDMGSGKG--G-DMLKWINGGVKHVVFADIASVSIEDCKTRY 335 (597)
Q Consensus 294 ~rVLDLGCGtG--~-~l~~la~~g~~~V~GIDiS~~mIe~A~er~ 335 (597)
.+||=.|+..| . .+..++..|. +|++++.++...+...+..
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l 45 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQEL 45 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH
Confidence 45787776443 2 2233556674 8999999887665554443
No 497
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=23.70 E-value=2.2e+02 Score=29.69 Aligned_cols=91 Identities=23% Similarity=0.154 Sum_probs=50.8
Q ss_pred CCCEEEEECCCC-ChhHHHHHhcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeeh---hhhccCCCCCCce
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA---ELRSQYEDKALEL 367 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~---dl~e~l~~~~~sF 367 (597)
++.+||=.|||. |..+..+++....++++++.++...+.+++. . ... .+.. +....+ .+.+
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g---~~~--------vi~~~~~~~~~~~---~~~~ 233 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKL-G---ADE--------FIATKDPEAMKKA---AGSL 233 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc-C---CcE--------EecCcchhhhhhc---cCCc
Confidence 456676677743 4444445544324899999998877776432 1 110 1111 011111 2358
Q ss_pred eEEEEccchhhhccCHHHHHHHHHHHHHhccCCcEEEEEe
Q psy17742 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407 (597)
Q Consensus 368 DvVi~~~vLh~lFes~~d~~~~L~~i~rlLKPGG~fIit~ 407 (597)
|+|+....- . ..+..+.++|+++|.++..-
T Consensus 234 d~v~~~~g~-------~---~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 234 DLIIDTVSA-------S---HDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred eEEEECCCC-------c---chHHHHHHHhcCCCEEEEEe
Confidence 988754221 1 23567778899999988653
No 498
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=23.61 E-value=6.4e+02 Score=24.74 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=29.6
Q ss_pred CCEEEEECCCCCh---hHHHHHhcCCCEEEEEeCChHHHHHHHHHHHh
Q psy17742 293 PIKVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKTRYEE 337 (597)
Q Consensus 293 ~~rVLDLGCGtG~---~l~~la~~g~~~V~GIDiS~~mIe~A~er~~~ 337 (597)
+++||=.|+..|. .+..+++.|. +|++++.++...+.+.+.+..
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~ 53 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINK 53 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHh
Confidence 5678877764432 3344666775 899999998777666665543
No 499
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=23.60 E-value=2e+02 Score=32.77 Aligned_cols=97 Identities=15% Similarity=0.130 Sum_probs=55.9
Q ss_pred CCCEEEEECCCC-ChhHHHHH-hcCCCEEEEEeCChHHHHHHHHHHHhhhhhccccccccceeehhhhccCCCCCCceeE
Q psy17742 292 SPIKVLDMGSGK-GGDMLKWI-NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDL 369 (597)
Q Consensus 292 ~~~rVLDLGCGt-G~~l~~la-~~g~~~V~GIDiS~~mIe~A~er~~~~~~~~~~~~~~~d~F~~dl~e~l~~~~~sFDv 369 (597)
.+++|+=+|+|. |..+...+ ..| .+|+.+|.++.....|.. .+.. .. .+.+.+ ...|+
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~G-a~ViV~e~dp~~a~~A~~----~G~~---------~~--~leell----~~ADI 312 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFG-ARVVVTEIDPICALQAAM----EGYQ---------VV--TLEDVV----ETADI 312 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCchhHHHHHh----cCce---------ec--cHHHHH----hcCCE
Confidence 578999999997 54444433 345 489999988765433322 1110 11 111112 24899
Q ss_pred EEEccchhhhccCHHHHHHHH-HHHHHhccCCcEEEEEeCChhHH-HHHHh
Q psy17742 370 VSCQFCIHYSFESVQQARCML-KNAAECLKPGGFFVGTVPDSNQI-MARYR 418 (597)
Q Consensus 370 Vi~~~vLh~lFes~~d~~~~L-~~i~rlLKPGG~fIit~pn~~~i-~~~l~ 418 (597)
|++.-.- ..++ ......+|||++|+-+-.....+ ...+.
T Consensus 313 VI~atGt----------~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~ 353 (476)
T PTZ00075 313 FVTATGN----------KDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELE 353 (476)
T ss_pred EEECCCc----------ccccCHHHHhccCCCcEEEEcCCCchHHhHHHHH
Confidence 9875221 1233 46778899999998776554333 34443
No 500
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.37 E-value=6.7e+02 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=21.1
Q ss_pred CCCEEEEECCC----CCh-hHHHHHhcCCCEEEEEeCC
Q psy17742 292 SPIKVLDMGSG----KGG-DMLKWINGGVKHVVFADIA 324 (597)
Q Consensus 292 ~~~rVLDLGCG----tG~-~l~~la~~g~~~V~GIDiS 324 (597)
.++.+|=.|++ -|. .+..+++.|. +|+.++.+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~ 42 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAG 42 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCc
Confidence 35789999975 343 3444677775 78887654
Done!