RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17742
(597 letters)
>gnl|CDD|217477 pfam03291, Pox_MCEL, mRNA capping enzyme. This family of enzymes
are related to pfam03919.
Length = 327
Score = 299 bits (768), Expect = 2e-97
Identities = 124/326 (38%), Positives = 178/326 (54%), Gaps = 28/326 (8%)
Query: 235 EAGLGQTVAEHYNQKKNVGT--ELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGS 292
E+ + VA HYN+ G + R++S I +RNFNNW KS+LI + +
Sbjct: 7 ESNIVDIVAAHYNELPESGIDLKKRQDSTIDQLRNFNNWIKSLLISLY---ASKTFQDKP 63
Query: 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPY----- 347
KVLD+ GKGGD+ K+ GG+ ++ DIA VSIE + RY +L + +++ Y
Sbjct: 64 KRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERYNDLNSRSKSKYYKFDFI 123
Query: 348 ----RRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFF 403
+ F + +R +E + D+VS QF IHYSFES ++AR ML+N AE L GG F
Sbjct: 124 AEFITGDCFVSSVREVFEPGQRKFDIVSWQFAIHYSFESEEKARTMLRNLAELLASGGKF 183
Query: 404 VGTVPDSNQIMARYRRHQS--ASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVV-NCP 460
+GT PD + I+ + SFGN +Y V F+ P P FG KY +NLE +V + P
Sbjct: 184 IGTTPDGDFIIKKLTATFVEHKSFGNSIYYVS--FEKDPPRPPFGIKYVYNLEDMVTDVP 241
Query: 461 EFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAGLNLLRKMNALE--GHHK---- 514
E+LV F L +A E+GL+ + K+ F Y +IK++ L+ +M+ LE
Sbjct: 242 EYLVPFETLVELAEEYGLELVDKKTFHDIYNEEIKKYRSKMLINRMSGLESRPATYFELN 301
Query: 515 ---VGTLSKAEWEAITLYQVFAFEKV 537
+GTL EWEA+ LY VF FEK
Sbjct: 302 RLALGTLEGDEWEALLLYLVFVFEKR 327
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 53.2 bits (128), Expect = 7e-09
Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
+VLD+G G G L +G V DI+ V++E + K V
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELAR------KAAAALLADNVEVLKG 54
Query: 355 ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
+ + D++ +H+ E + + L+ A LKPGG V
Sbjct: 55 DAEELPPEADESFDVIISDPPLHHLVEDLAR---FLEEARRLLKPGGVLV 101
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 154
Score = 47.1 bits (112), Expect = 3e-06
Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 32/134 (23%)
Query: 276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRY 335
L+ L R K +VLD+G G G +L+ + V D + ++
Sbjct: 12 LLARLLPRLKP------GGRVLDIGCG-TGILLRLLRERGFDVTGVDPSPAAVLIFSLFD 64
Query: 336 EELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAE 395
A Y DL++ E + +L+ E
Sbjct: 65 APD-PAVLAGKY--------------------DLITA---FE-VLEHLPDPPALLQQLRE 99
Query: 396 CLKPGGFFVGTVPD 409
LKPGG + + P
Sbjct: 100 LLKPGGVLLISTPL 113
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 44.6 bits (106), Expect = 5e-06
Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 21/110 (19%)
Query: 297 LDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEAR--PYRRNVFSA 354
LD+G G G G V D++ + + R +A P+ F
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESF-- 58
Query: 355 ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
D+V +H+ ++A L+ A LKPGG V
Sbjct: 59 -------------DVVVSSLVLHH-LPDPERA---LREIARVLKPGGKLV 91
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 43.9 bits (104), Expect = 1e-05
Identities = 29/106 (27%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 296 VLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE 355
+LD+G G G + G V DI+ ++E K R + K V A
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRF-----VVADAR 55
Query: 356 LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGG 401
E DLV C +Q R +L+ AA L+PGG
Sbjct: 56 DLPFEEGSF---DLVICAGLSLDYLSP-KQLRALLREAARLLRPGG 97
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 43.1 bits (102), Expect = 2e-05
Identities = 22/109 (20%), Positives = 36/109 (33%), Gaps = 13/109 (11%)
Query: 297 LDMGSGKGGDMLKWI--NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
LD+G G G +L+ + DI+ ++E E L R +
Sbjct: 1 LDIGCG-TGTLLRALLEALPGLEYTGVDISPAALEAAA---ERLAALGLLDAVRVRLDVL 56
Query: 355 ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFF 403
+ D+V +H+ + L+N LKPGG
Sbjct: 57 DAIDLDPGSF---DVVVASNVLHH-LADPRAV---LRNLRRLLKPGGVL 98
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 42.0 bits (99), Expect = 2e-04
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 290 LGSPIKVLDMGSGKG--GDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPY 347
L S IKVLD+G G G +L G VV DI+ +IE K ++L E
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLG-YENVEFI 59
Query: 348 RRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
+ ++ + Q ED D+V +++ + +L+ LKPGG +
Sbjct: 60 QGDIEELP-QLQLEDN--SFDVVISNEVLNHLPDPD----KVLEEIIRVLKPGGVLI 109
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 39.9 bits (94), Expect = 0.002
Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 14/117 (11%)
Query: 290 LGSPIKVLDMGSGKGGDMLKWI--NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPY 347
+ KVLD+ G GDM + + G VV DI+ +E + + ++ +
Sbjct: 49 IKPGDKVLDVACGT-GDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK----GVQNV 103
Query: 348 RRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
V AE + D D V+ F + + +A LK LKPGG +
Sbjct: 104 EFVVGDAE-NLPFPDN--SFDAVTISFGLRN-VTDIDKA---LKEMYRVLKPGGRLL 153
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 36.5 bits (85), Expect = 0.006
Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 15/114 (13%)
Query: 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRR-N 350
+VLD+G G G ++ +F ++ E + + R
Sbjct: 1 PGARVLDIGCGTGSLAIELAR------LFPGARVTGVDLSPEMLELARENAKLALGPRIT 54
Query: 351 VFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
+ + D V E +L A LKPGG V
Sbjct: 55 FVQGDAPDALDLLE-GFDAVFIGGGGGDLLE-------LLDALASLLKPGGRLV 100
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 37.2 bits (83), Expect = 0.015
Identities = 34/202 (16%), Positives = 56/202 (27%), Gaps = 10/202 (4%)
Query: 295 KVLDMGSGKGGD-MLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFS 353
VLD+G G G +L + G +VV D++ + + R E V
Sbjct: 51 GVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL----VDFVVAD 106
Query: 354 AELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413
A + + DLV +H L+ LKPGG V + + +
Sbjct: 107 ALGGVLPFEDSASFDLVISLLVLHL-----LPPAKALRELLRVLKPGGRLVLSDLLRDGL 161
Query: 414 MARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIA 473
+ + + L + L + L + L
Sbjct: 162 LEGRLAALLGFGDPVLERGDILLELEALLRLELLDLEELLGLLGELELERGGLARLLEEL 221
Query: 474 GEFGLKRILKENFRSFYLRKIK 495
L R F L +
Sbjct: 222 RLLLELLALGLEARGFRLLLLL 243
>gnl|CDD|216379 pfam01234, NNMT_PNMT_TEMT, NNMT/PNMT/TEMT family.
Length = 255
Score = 32.8 bits (75), Expect = 0.42
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
D V FC+ Y+ +++ L+N A LKPGG V
Sbjct: 159 DCVVTIFCLEYACPDLEEYCRALRNLASLLKPGGHLV 195
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 31.8 bits (73), Expect = 0.75
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 29/119 (24%)
Query: 295 KVLDMGSGKGGDMLKWIN---GGVKHVVFADIASVSIEDCKTRYEELKRKE------EAR 345
KVLD+ G G D+ + V D +S +E K + E E EA
Sbjct: 42 KVLDVACGTG-DLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEAL 100
Query: 346 PYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
P+ N F D V+ F + + +Q+A L+ LKPGG V
Sbjct: 101 PFEDNSF---------------DAVTIAFGLR-NVTDIQKA---LREMYRVLKPGGRLV 140
>gnl|CDD|187803 cd09672, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-A subtype; also known as TM1802 family.
Length = 545
Score = 31.7 bits (72), Expect = 1.3
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 280 FLTRCKSSQP---LGSPIKVLDMGSGKGGDMLKWIN---GGVKHVVFADIASVSIEDC-K 332
FL R K + L + K+ +G G ++K + GG + ++ ++ K
Sbjct: 60 FLYRAKGNNGQDFLPTTYKICSAKAGNGSSIVKLFDVLLGGTLKNLLKEVKDKLFKNKEK 119
Query: 333 TRYEELKRKEEARP 346
RY K
Sbjct: 120 VRYCLDLSKIGNGE 133
>gnl|CDD|234910 PRK01158, PRK01158, phosphoglycolate phosphatase; Provisional.
Length = 230
Score = 30.7 bits (70), Expect = 1.6
Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 312 NGGVKHVVFA--DIASVSIEDCKTRYEELKRK------------EEARP----YRRNVFS 353
NGGV V F I IE+C+ Y ELK++ + R RR V
Sbjct: 67 NGGVISVGFDGKRIFLGDIEECEKAYSELKKRFPEASTSLTKLDPDYRKTEVALRRTVPV 126
Query: 354 AELRSQYEDKALELDLVSCQFCIH 377
E+R E+ L+L++V F IH
Sbjct: 127 EEVRELLEELGLDLEIVDSGFAIH 150
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 30.7 bits (70), Expect = 1.8
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 15/112 (13%)
Query: 295 KVLDMGSGKG--G-DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNV 351
KVLD+G G G G + K + D+ + ++E + K V
Sbjct: 161 KVLDLGCGYGVLGLVLAKK--SPQAKLTLVDVNARAVESAR------KNLAANGVENTEV 212
Query: 352 FSAELRSQYEDKALELDLVSCQFCIHYSFE-SVQQARCMLKNAAECLKPGGF 402
+++ L E K DL+ H A+ ++ AA LKPGG
Sbjct: 213 WASNLYEPVEGK---FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGE 261
>gnl|CDD|237065 PRK12334, PRK12334, nucleoside triphosphate pyrophosphohydrolase;
Reviewed.
Length = 277
Score = 30.8 bits (70), Expect = 1.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 319 VFADIASVSIEDCKTRYEELKRKEEAR 345
VFAD ++S+E+ ++E K E+AR
Sbjct: 158 VFADGEAISLEEQLAQWEARKAAEKAR 184
>gnl|CDD|182913 PRK11029, PRK11029, FtsH protease regulator HflC; Provisional.
Length = 334
Score = 30.5 bits (69), Expect = 2.2
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 537 VKGKVTPDVGKLTPDS----GKVTPDLELPTKRPASDDASSSDSAKVAR 581
VK VT G+LT D + E PA+DDA +S + +V
Sbjct: 136 VKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAADDAIASAAERVEA 184
>gnl|CDD|132246 TIGR03202, pucB, xanthine dehydrogenase accessory protein pucB. In
Bacillus subtilis the expression of this protein,
located in an operon with the structural subunits of
xanthine dehydrogenase, has been found to be essential
for XDH activity. Some members of this family appear to
have a distant relationship to the MobA protein involved
in molybdopterin biosynthesis, although this may be
coincidental.
Length = 190
Score = 29.0 bits (65), Expect = 5.4
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 22/78 (28%)
Query: 411 NQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLE 470
N ++A +R D Y RPP LF FP L+
Sbjct: 115 NALLALAKRRP------DDYVAASFKGKPRPPILFSKS----------------LFPKLK 152
Query: 471 RIAGEFGLKRILKENFRS 488
+ G+ G + +L+++
Sbjct: 153 ALKGDEGARALLRKDKSG 170
>gnl|CDD|233926 TIGR02556, cas_TM1802, CRISPR-associated protein, TM1802 family.
This minor cas protein is found in CRISPR/cas regions of
at least five prokaryotic genomes: Methanosarcina mazei,
Sulfurihydrogenibium azorense, Thermotoga maritima,
Carboxydothermus hydrogenoformans, and Dictyoglomus
thermophilum, the first of which is archaeal while the
rest are bacterial [Mobile and extrachromosomal element
functions, Other].
Length = 555
Score = 29.4 bits (66), Expect = 5.6
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 280 FLTRCKSSQP---LGSPIKVLDMGSGKGGDMLKWIN---GGVKHVVFADIASVSIEDC-K 332
FL R K S P + K+ +G G ++K + GG + ++ ++ K
Sbjct: 65 FLYRAKGSNPQDRVTPTYKICSAKAGNGSSIVKLFDVLLGGTLKNLLKEVKDKLFKNKEK 124
Query: 333 TRYEELKRK 341
RY K
Sbjct: 125 VRYCLDLSK 133
>gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional.
Length = 226
Score = 28.9 bits (65), Expect = 5.6
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 237 GLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKV 296
GLG T E + + +R + W L+ L C G P KV
Sbjct: 3 GLGATWEELQEAYNKIPKAYDRANRFISFNQDVRWRAE-LVKTILKYC------GRPKKV 55
Query: 297 LDMGSGKGGDMLKWING-GVKHVVFADIA 324
LD+ +GK G++ +VV D A
Sbjct: 56 LDVAAGK-GELSYHFKKVFKYYVVALDYA 83
>gnl|CDD|216666 pfam01728, FtsJ, FtsJ-like methyltransferase. This family consists
of FtsJ from various bacterial and archaeal sources FtsJ
is a methyltransferase, but actually has no effect on
cell division. FtsJ's substrate is the 23S rRNA. The 1.5
A crystal structure of FtsJ in complex with its cofactor
S-adenosylmethionine revealed that FtsJ has a
methyltransferase fold. This family also includes the N
terminus of flaviviral NS5 protein. It has been
hypothesised that the N-terminal domain of NS5 is a
methyltransferase involved in viral RNA capping.
Length = 177
Score = 28.7 bits (65), Expect = 5.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 379 SFESVQQARCMLKNAAECLKPGGFFV 404
SF S+Q L A E L+PGG FV
Sbjct: 106 SFISLQLVLAALLLALEVLRPGGNFV 131
>gnl|CDD|236615 PRK09709, PRK09709, exonuclease VIII; Reviewed.
Length = 877
Score = 29.6 bits (66), Expect = 6.4
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 176 IQETVIEQNVEDSEEQRLTERPVEDDTEETTITTTTGEDSTSLGASQSPCSDQSELTNQE 235
+ + V E+ +D EE+ +P +E T D+T P QS++ + +
Sbjct: 385 MPQRVTEEGKQDDEEK---PQPSGTTADEQATAETVEPDATEHHQDTQPLDAQSQVNSVD 441
Query: 236 AGLGQTVAEHYNQKKNV 252
A + AE + +KN+
Sbjct: 442 AKYQELRAELHEARKNI 458
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 29.1 bits (65), Expect = 6.7
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 13/80 (16%)
Query: 131 GYSHSIGEQQDISQHSSHAQRTAEEMLAIRSITGESFD-----LEDAEQFIQETVIEQNV 185
G S +G+ + +E + R+ + D +E E + E+ IE +
Sbjct: 248 GGSDELGKSLPSLMSPRKKTASFKEQVVTRTFPERTSDDDEDAIETEEDDVDESAIEDDD 307
Query: 186 EDSEEQRLTERPVEDDTEET 205
+DS+ ED EE+
Sbjct: 308 DDSDW--------EDSVEES 319
>gnl|CDD|218874 pfam06051, DUF928, Domain of Unknown Function (DUF928). Family
of uncharacterized bacterial protein.
Length = 189
Score = 28.5 bits (64), Expect = 6.9
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 40 TPTFYWYT-YHTSVACLFTM-DSEGNATYEDE 69
PTF++Y Y+++ F + D G Y+
Sbjct: 35 HPTFFFYVPYNSASEAEFVLKDEAGKEVYQTT 66
>gnl|CDD|214826 smart00806, AIP3, Actin interacting protein 3. Aip3p/Bud6p is a
regulator of cell and cytoskeletal polarity in
Saccharomyces cerevisiae that was previously identified
as an actin-interacting protein. Actin-interacting
protein 3 (Aip3p) localizes at the cell cortex where
cytoskeleton assembly must be achieved to execute
polarized cell growth, and deletion of AIP3 causes gross
defects in cell and cytoskeletal polarity. Aip3p
localization is mediated by the secretory pathway,
mutations in early- or late-acting components of the
secretory apparatus lead to Aip3p mislocalization.
Length = 426
Score = 29.3 bits (66), Expect = 7.2
Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 11/107 (10%)
Query: 169 LEDAEQFIQETVIEQNVEDSEEQRLTERPVEDDTEETTITTTTGEDSTSLGASQSPCSDQ 228
++ + + E + QRL ER + + + +
Sbjct: 87 IDTLQNELDEVKQALESQREAIQRLKERQQN----------SAANIARPAASPSPVLASS 136
Query: 229 SELTNQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSM 275
S + + E + K++ EL R + F +S+
Sbjct: 137 SSAISLANNPDKLNKEQRAELKSLQRELAV-LRQTHNSFFTEIKESI 182
>gnl|CDD|144565 pfam01024, Colicin, Colicin pore forming domain.
Length = 187
Score = 28.5 bits (64), Expect = 8.4
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 227 DQSELTNQEAGLGQTVAEHYNQK-KNVGTELRKNSRIVYMRNFNNWTKS 274
D SE T AG G+ V E+Y +K K + EL +++ +R+ + S
Sbjct: 14 DASEFT---AGFGKKVGEYYGEKYKKLARELADDAKGKKIRSVDEALAS 59
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 28.4 bits (64), Expect = 8.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 389 MLKNAAECLKPGGFFVGTVPDSNQIMA 415
+L++ ++ LKPGG V P Q+
Sbjct: 177 VLEHVSDALKPGGVVVVYSPTVEQVEK 203
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.381
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,921,384
Number of extensions: 2917093
Number of successful extensions: 2832
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2805
Number of HSP's successfully gapped: 51
Length of query: 597
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 495
Effective length of database: 6,413,494
Effective search space: 3174679530
Effective search space used: 3174679530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.7 bits)