RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17742
(597 letters)
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 253 bits (646), Expect = 8e-80
Identities = 90/300 (30%), Positives = 148/300 (49%), Gaps = 28/300 (9%)
Query: 240 QTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDM 299
+ + EHYN + G E R+ S+ + +RN NN+ K+ LI + R VLD+
Sbjct: 21 EEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGD---------SVLDL 71
Query: 300 GSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ 359
G GKGGD+LK+ G+ DIA VSI D + R +KR+ + ++ + +
Sbjct: 72 GCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSY-----GR 126
Query: 360 YEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRR 419
+ D E D++S QF HY+F + + +N A L+PGG+F+ TVP + I+ RY++
Sbjct: 127 HMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQ 186
Query: 420 HQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNL-EGVVNCPEFLVYFPLLERIAGEFGL 478
+ ND Y+++ L P +Y F L + V NC E+ V F + GL
Sbjct: 187 GR---MSNDFYKIE-LEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGL 242
Query: 479 KRILKENFRSFYLRKIKEHAGLNLLRKMNALEGHHKVGTLSKAEWEAITLYQVFAFEKVK 538
+ ++ F FY + + + L +KM +G L++ E E + +Y+V F K+
Sbjct: 243 SLVERKGFIDFYEDEGRRNP--ELSKKM-------GLGCLTREESEVVGIYEVVVFRKLV 293
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 251 bits (642), Expect = 3e-79
Identities = 135/315 (42%), Positives = 184/315 (58%), Gaps = 39/315 (12%)
Query: 259 NSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHV 318
SRI Y+RNFNNW KS+LI EFL + + + I VLD+G GKGGD+LKW G + +
Sbjct: 3 QSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRD--ITVLDLGCGKGGDLLKWKKGRINKL 60
Query: 319 VFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE------LRSQYEDKALELDLVSC 372
V DIA VS++ C+ RYE++K + ++ F L ++ D + D+ SC
Sbjct: 61 VCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSC 120
Query: 373 QFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQV 432
QF HYSFES +QA ML+NA E L PGG+F+GT P+S +++ R ++ SFGN++Y V
Sbjct: 121 QFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTV 180
Query: 433 QCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLR 492
+ F PLFG KYDFNLEGVV+ PEFLVYFPLL +A ++ +K + K+ F FY
Sbjct: 181 K--FQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFLEFYEE 238
Query: 493 KIKEHAGLNLLRKMNALE-----------------------------GHHKVGTLSKAEW 523
KIK + LL++M ALE +GTLSK+EW
Sbjct: 239 KIKNNENKMLLKRMQALEPYPANESSKLVSEKVDDYEHAAKYMKNSQVRLPLGTLSKSEW 298
Query: 524 EAITLYQVFAFEKVK 538
EA ++Y VFAFEK +
Sbjct: 299 EATSIYLVFAFEKQQ 313
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 231 bits (591), Expect = 1e-71
Identities = 56/309 (18%), Positives = 114/309 (36%), Gaps = 24/309 (7%)
Query: 243 AEHYNQKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSG 302
A+ + V K +R + +N+ K++LI + + K+ + KVL + G
Sbjct: 2 ADKFRLNPEVSYFTNKRTRG-PLGILSNYVKTLLISMYCS--KTFLDDSNKRKVLAIDFG 58
Query: 303 KGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR---------RNVFS 353
G D+ K+ G + +V D + +I RY +L + + Y+ + F
Sbjct: 59 NGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFV 118
Query: 354 AELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413
+ +R + + +++ QF IHYSF A ++ N +E GG + T D +++
Sbjct: 119 SSVREVFYFG--KFNIIDWQFAIHYSFHPRHYAT-VMNNLSELTASGGKVLITTMDGDKL 175
Query: 414 MARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVV-NCPEFLVYFPLLERI 472
+ N S +N + E+++ + R+
Sbjct: 176 SKLTDKKTFIIHKNLPSSEN---YMSVEKIADDRIVVYNPSTMSTPMTEYIIKKNDIVRV 232
Query: 473 AGEFGLKRILKENFRSFYLRKIKEHAGL-NLLRKMNALEGHH-KVGTLSKAEWE---AIT 527
E+G + +F + R K G + + + G + + ++
Sbjct: 233 FNEYGFVLVDNVDFATIIERSKKFINGASTMEDRPSTRNFFELNRGAIKCEGLDVEDLLS 292
Query: 528 LYQVFAFEK 536
Y V+ F K
Sbjct: 293 YYVVYVFSK 301
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.8 bits (160), Expect = 3e-11
Identities = 100/566 (17%), Positives = 165/566 (29%), Gaps = 185/566 (32%)
Query: 119 VEEAAVRSIP-GHG-YSHSIGEQQDISQHS-SHAQRTAEEMLAIRSITGESFDLED---- 171
++ + R + HG H + + S A + E+ I E F +D
Sbjct: 1 MDAYSTRPLTLSHGSLEHVL----LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 172 -AE---QFIQETVIEQNVEDSEEQRLTE--RPVEDDTEE---------TTITTTTGEDST 216
AE +F+ + VE S+ + + + E E+ T
Sbjct: 57 PAELVGKFLG--YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 217 SLGASQS--------------PCSD--QSEL----TNQEAGL-----GQTVAEHYNQKKN 251
+L ++ P S L A L GQ + Y +
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE--- 171
Query: 252 VGTELRK----------------------------NSRIVYMRNFN--NW---TKSMLID 278
ELR ++ V+ + N W +
Sbjct: 172 ---ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 279 EFLTRCKSSQPLGSPI------------KVLDMGSGKGGDMLKWINGGVKHVVFADIASV 326
++L S PL I K+L G+ LK G + +V A ++
Sbjct: 229 DYLLSIPISCPL---IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA--VAI 283
Query: 327 SIEDCKTRYEELKRKEEARPYRRNVFSAELRSQ--YEDKALELDLV-----------SCQ 373
+ D + R +F +R Y + +L ++ S
Sbjct: 284 AETDSWESFFVS-----VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 374 FCI-HYSFESVQ--------------QARCMLKNAAECLKPGGFFV--GTVPDSNQIMAR 416
I + + E VQ Q L N A+ V G P S +
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN------LVVSGP-PQSLYGLNL 391
Query: 417 YRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYF--PLLERIAG 474
R A G D Q + F + R F ++ L V P F LL A
Sbjct: 392 TLRKAKAPSGLD--QSRIPF-SERKLK-FSNRF---L--PVASP-----FHSHLLVP-AS 436
Query: 475 EFGLKRILKENFRSFYLRKIKE-----HAGLNLLRKMNALEGHHKVGTL--SKAEWEAIT 527
+ K ++K N SF + I+ G + LR ++ V + +WE T
Sbjct: 437 DLINKDLVKNNV-SFNAKDIQIPVYDTFDGSD-LRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 528 LYQ---VFAFEKVKGK-VTPDVGKLT 549
++ + F G +G LT
Sbjct: 495 QFKATHILDF----GPGGASGLGVLT 516
Score = 51.6 bits (123), Expect = 7e-07
Identities = 59/379 (15%), Positives = 114/379 (30%), Gaps = 128/379 (33%)
Query: 5 VNGPLNYL-QCCPKFITMLPDVQCTPLSINNVYLR---------ITPTFY-----WYTYH 49
++ PL + Q ++ + TP + + YL+ +T W ++
Sbjct: 236 ISCPLIGVIQLA-HYVVTAKLLGFTPGELRS-YLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 50 TSVA----CLFTMDSEGNATYEDEEYS---VQYSEEPEEETEE-MMAIRSITEAGFSEAK 101
SV LF + Y + ++ S E E M++I ++ +
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS-----NLTQEQ 348
Query: 102 AEEFHRKRNKPRVQRETVEEAAVRS-----IPGHGYS--------HSIGEQQDISQHSS- 147
+++ K N + VE + V + G S + Q
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 148 HAQRTAEEMLAIRSITGESFD----------LEDAEQFIQETVIEQNVE-DSEEQRLTER 196
++R + F L A I + +++ NV ++++ ++
Sbjct: 409 FSER--------KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI--- 457
Query: 197 PVEDDTEETTITTTTGEDSTSLGASQSPCSDQSELTNQEAGLGQTVAEHYNQKKNVGTEL 256
PV D T G D L S S + +
Sbjct: 458 PVYD--------TFDGSDLRVLSGSISE-----RIVDC---------------------- 482
Query: 257 RKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGK--G-GDMLKWI-N 312
I+ + W T+ K++ +LD G G G G + +
Sbjct: 483 -----IIRLP--VKWET-------TTQFKAT-------HILDFGPGGASGLGVLTHRNKD 521
Query: 313 G-GVKHVVFADIASVSIED 330
G GV V+ A ++ +D
Sbjct: 522 GTGV-RVIVAGTLDINPDD 539
Score = 43.5 bits (102), Expect = 2e-04
Identities = 53/309 (17%), Positives = 99/309 (32%), Gaps = 100/309 (32%)
Query: 248 QKKNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLG---------SPIKVLD 298
Q++ +G +L K S+ ++ W + D G +P+ +
Sbjct: 1627 QEQGMGMDLYKTSKAA--QDV--WNR---ADNHFKDT-----YGFSILDIVINNPVNLTI 1674
Query: 299 MGSGKGGDMLK----------WINGGVKH-VVFADI----ASVSIEDCKTRYEELKRKEE 343
G+ G ++ ++G +K +F +I S + K L +
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK---GLLSATQF 1731
Query: 344 ARPYRRNVFSAELRSQYED-KALELDLVSCQFCIH----YSFES--VQQARCM-LKNAAE 395
+P + E + +ED K+ L F H Y + A M +++ E
Sbjct: 1732 TQP---ALTLMEK-AAFEDLKSKGLIPADATFAGHSLGEY---AALASLADVMSIESLVE 1784
Query: 396 CLKP-GGFFVGTVP-----DSNQIMARYRRHQ-SASFGNDVYQVQCLFDTSRPPPLFGAK 448
+ G VP SN M + +ASF + Q G +
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV--------ERVGKR 1836
Query: 449 YDFNLEGVVN--CPEF-LVYFPLLERIAGE-------------FGLKRI----LKENFRS 488
+ +E +VN V AG+ L++I L++ S
Sbjct: 1837 TGWLVE-IVNYNVENQQYV-------AAGDLRALDTVTNVLNFIKLQKIDIIELQK---S 1885
Query: 489 FYLRKIKEH 497
L +++ H
Sbjct: 1886 LSLEEVEGH 1894
Score = 34.6 bits (79), Expect = 0.11
Identities = 48/305 (15%), Positives = 95/305 (31%), Gaps = 104/305 (34%)
Query: 50 TSVACLFTMDSEGNATYEDEEY-SVQYSEEPEEETEEMMAIRSITEAGFS---EAKAEEF 105
++ F +G E+ Y ++ + + + + + I E S ++
Sbjct: 1670 VNLTIHFG-GEKGKRIREN--YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 106 HRKRN-KPRVQRETVEEAAVRSIPGHGYS--------HSIGEQQDISQHSSHAQRTAEEM 156
+ +P + +E+AA + G HS+GE A
Sbjct: 1727 SATQFTQPALT--LMEKAAFEDLKSKGLIPADATFAGHSLGEY------------AA--- 1769
Query: 157 LAIRSITGESFDLEDAEQFIQETVIEQNVEDSEEQR--LTERPVEDDTEETTITTTTGED 214
LA S+ +E + E V R + V D G
Sbjct: 1770 LA--SLAD-VMSIESL---V-EVV---------FYRGMTMQVAVPRDEL--------GRS 1805
Query: 215 STSLGASQSPCSDQSELTNQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRNFNNWTKS 274
+ + A +P + +QEA Q V E ++ E IV N+N
Sbjct: 1806 NYGMIAI-NP-GRVAASFSQEA--LQYVVERVGKRTGWLVE------IV---NYN----- 1847
Query: 275 MLIDEFLTRCKSSQPLGSPIKVLDMGSG------KGGDMLKWINGGVKHVVFADIA-SVS 327
++ Q V +G ++L +I ++ + ++ S+S
Sbjct: 1848 ---------VENQQ-----Y-VA---AGDLRALDTVTNVLNFI--KLQKIDIIELQKSLS 1887
Query: 328 IEDCK 332
+E+ +
Sbjct: 1888 LEEVE 1892
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 57.0 bits (137), Expect = 4e-09
Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 17/161 (10%)
Query: 266 RNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGG---DMLKWI----NGGVKHV 318
+ + L + S IK+L +G G G +L + G +
Sbjct: 30 QCMQEFMDKKLPGIIGRIGDTK----SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINN 85
Query: 319 VFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALE--LDLVSCQFCI 376
+ ++ I K + E + S+E +S+ +K D + +
Sbjct: 86 EVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQML 145
Query: 377 HYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARY 417
+Y V+ LK L + V + +
Sbjct: 146 YY----VKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKL 182
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 5e-09
Identities = 74/569 (13%), Positives = 155/569 (27%), Gaps = 160/569 (28%)
Query: 17 KFITMLPDVQCTPLSINNVYLRITPTFYWY--TYHTSVACLFTMDSEGNATYE--DEEYS 72
I M D ++ +W + + F + Y+
Sbjct: 52 DHIIMSKDA------VSGTLR-----LFWTLLSKQEEMVQKFVEEVL-RINYKFLMSPIK 99
Query: 73 VQYSEEPEEETEEMMAIRSITEAGFSEAKAEEFHRKRNKPRVQ-----RETVEEAAVRSI 127
+ +P T + R + F K N R+Q R+ + E +R
Sbjct: 100 TEQ-RQPSMMTRMYIEQRDRLYND-----NQVF-AKYNVSRLQPYLKLRQALLE--LRPA 150
Query: 128 PG---HG--------------YSHSIGEQQDISQH--SSHAQRTAEEMLAIRSITGESFD 168
G S+ + + D + + E +L + D
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 169 LEDAEQFIQETVIEQNVEDSEEQR---LTERP------VEDDTEE------------TTI 207
+ + I+ + + + L +P V + + +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270
Query: 208 TTTTGEDSTSLGASQSPCSDQSELTNQEAGLGQTVAEHYNQKKNVGTELRKNSRIVYMRN 267
TT + + L A+ + ++ + T E L
Sbjct: 271 TTRFKQVTDFLSAAT-----TTHISLDHHSMTLTPDE--------VKSL----------- 306
Query: 268 FNNWTKSMLIDEFLTR--CKSSQPLGSPIKVLDM-GSGKGGDMLKWINGGVKHVVFADIA 324
+ + L R ++ P L + + W N KHV +
Sbjct: 307 LLKYL-DCRPQD-LPREVLTTN-PR-----RLSIIAESIRDGLATWDN--WKHVNCDKLT 356
Query: 325 SVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKAL---ELDLVSCQFCI---HY 378
++ IE L+ AE R ++ ++ + + +
Sbjct: 357 TI-IESS---LNVLE-------------PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 379 SFESVQQARCMLKNAAECLKPGGFFVGTVPD-----SNQIMARYRRHQSASFGNDVYQVQ 433
V L + K ++P ++ Y H+S D Y +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV---DHYNIP 456
Query: 434 CLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVY-FPLLERIAGEFGLKRILKENFRSFYLR 492
FD+ P + +Y ++ + + +E L R++ +FR F +
Sbjct: 457 KTFDSDDLIPPYLDQYFYS---------HIGHHLKNIEH-PERMTLFRMVFLDFR-FLEQ 505
Query: 493 KIKEHAG---------LNLLRKMNALEGH 512
KI+ H LN L+++ + +
Sbjct: 506 KIR-HDSTAWNASGSILNTLQQLKFYKPY 533
Score = 48.3 bits (114), Expect = 6e-06
Identities = 75/566 (13%), Positives = 143/566 (25%), Gaps = 193/566 (34%)
Query: 144 QHSSHAQ-RTAEEMLAIRSITGESFDLEDAEQFIQETVIEQNVEDSEEQRLTERPVEDDT 202
H H T E + I EDA F+ ++V+D + L++ ++
Sbjct: 2 HHHHHMDFETGEHQYQYKDIL---SVFEDA--FVDNFDC-KDVQDMPKSILSKEEIDH-- 53
Query: 203 EETTITTTTGEDSTSLGASQSPCSDQSELTNQEAGLGQTVAEHYN------QKKNVGTEL 256
I + S +L + S Q E+ + + + + +Y + + +
Sbjct: 54 ----IIMSKDAVSGTLRLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 257 RKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLD---------M-GSGK--- 303
I N + ++R + L + L + GSGK
Sbjct: 108 MTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 304 GGDMLK-------------WINGGVKHV----------VFADIASVSIEDCKTRYEELKR 340
D+ W+N + + I R
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 341 KEEARPYRRNVFSAELRSQYEDKALELDLV-----------SCQFCIHYSFESVQQARCM 389
+ R + ++ YE+ L L V SC+ + F+ V
Sbjct: 227 IHSIQAELRRLLKSK---PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 390 LKNAAECLK--PGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPP----- 442
L T + ++ +Y Q L P
Sbjct: 284 ATTTHISLDHHSMTL---TPDEVKSLLLKY-------LDCR---PQDL-----PREVLTT 325
Query: 443 -PL----FGA-------------KYDFN-----LEGVVNC---PEF------LVYFP--- 467
P + + +E +N E+ L FP
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 468 -----LL------------ERIAGEFGLKRILKENFRSF-------YLR---KIKEHAGL 500
LL + + ++++ + YL K++ L
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 501 N--LLRKMNALE--------------------GHHKVGTLSKAE----WEAIT-LYQVFA 533
+ ++ N + GHH L E ++ F
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH----LKNIEHPERMTLFRMVFLDFR 501
Query: 534 FEKVKGKVTPDVGKLTPDSGKVTPDL 559
F ++ K+ D SG + L
Sbjct: 502 F--LEQKIRHD-STAWNASGSILNTL 524
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 49.5 bits (118), Expect = 6e-07
Identities = 22/115 (19%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
Query: 295 KVLDMGSGKGGDMLKWI--NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
+V+D+G G G++LK + + + + D++ S+E + R + L+ + +
Sbjct: 32 RVIDLGCG-QGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ 90
Query: 353 SAELRSQYEDKALE-LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406
A Y+DK D + I + + + E +P V T
Sbjct: 91 GALT---YQDKRFHGYDAATVIEVIEHLDL--SRLGAFERVLFEFAQPKIVIVTT 140
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 49.7 bits (118), Expect = 2e-06
Identities = 47/299 (15%), Positives = 95/299 (31%), Gaps = 33/299 (11%)
Query: 221 SQSPCSDQSELTNQEAGLGQTVAEHYNQKKNVGTELRKN------SRIVYMRNFNNWTKS 274
+ ++ + + VA++Y + +L+ + + R
Sbjct: 6 ASGCQKSKNGGSTPS--IRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIAD 63
Query: 275 MLIDEFLTRCKSSQPLGSPI---KVLDMGSGKGGD--MLKWINGGVKHVVFADIASVSIE 329
++++F C S+ P + VLD+G G G D + + G V+ D+ +E
Sbjct: 64 EVLEKFY-GCGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLE 122
Query: 330 DCKTRYEELKRKEEARPYRRNV-F---SAELRSQYEDKALE---LDLVSCQFCIHYSFES 382
+ E K P R NV F E + E + + +D+V + +
Sbjct: 123 VARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNL-STN 181
Query: 383 VQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPP 442
K L+ GG + +++ ++ + +G CL
Sbjct: 182 KLAL---FKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGE------CLGGALYLE 232
Query: 443 PLFGAKYDFNLEGV--VNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRKIKEHAG 499
+ V V+ V P L ++ + F+ L +E G
Sbjct: 233 DFRRLVAEAGFRDVRLVSVGPVDVSDPQLRKLVPDVQFYSCTFRCFKVATLEATREDYG 291
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 48.1 bits (114), Expect = 2e-06
Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 10/115 (8%)
Query: 293 PIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
+ L G G G D++ + + VV DI+ ++ Y + E + +VF
Sbjct: 67 LGRALVPGCGGGHDVV-AMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVF 125
Query: 353 SAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407
+ + DL+ + E + K+ E LKP G + +
Sbjct: 126 TWRPTELF-------DLIFDYVFFC-AIEPEMRPA-WAKSMYELLKPDGELITLM 171
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 47.6 bits (113), Expect = 3e-06
Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 16/137 (11%)
Query: 293 PIKVLDMGSGKGGDMLKWI--NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRN 350
KV+D+G G G++L + + + + D++ +E K R LK R+
Sbjct: 30 AKKVIDLGCG-EGNLLSLLLKDKSFEQITGVDVSYSVLERAKDR---LKIDRLPEMQRKR 85
Query: 351 VFSAELRSQYEDKALEL-DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409
+ + Y DK D + I + E+ QA K E +P V + P+
Sbjct: 86 ISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQA--FEKVLFEFTRPQTVIV-STPN 142
Query: 410 S------NQIMARYRRH 420
+ RH
Sbjct: 143 KEYNFHYGNLFEGNLRH 159
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 49.1 bits (116), Expect = 3e-06
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 7/118 (5%)
Query: 292 SPIKVLDMGSGKGGDMLKWI---NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR 348
S ++D G G G +L + ++ ++ DI+ + KE
Sbjct: 721 SASTLVDFGCG-SGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKS 779
Query: 349 RNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGT 406
++ + +++ + ++D+ +C I + E QA + P V T
Sbjct: 780 ATLYDGSI-LEFDSRLHDVDIGTCLEVIEHMEE--DQACEFGEKVLSLFHPKLLIVST 834
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 47.4 bits (112), Expect = 5e-06
Identities = 18/153 (11%), Positives = 49/153 (32%), Gaps = 10/153 (6%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
++D G G K+++ V+ D++ ++E +A
Sbjct: 59 PLIDFACG-NGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAA 117
Query: 355 ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQIM 414
++ S+ D + + H+ ++ + ++ L G + +
Sbjct: 118 QIHSEIGD-----ANIYMRTGFHHIPVEKREL--LGQSLRILLGKQGAMY--LIELGTGC 168
Query: 415 ARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGA 447
+ +G Y++ + + P +F A
Sbjct: 169 IDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTA 201
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 46.8 bits (111), Expect = 5e-06
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 16/163 (9%)
Query: 278 DEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE 337
++FL + P G K+L + G+G + + G V D +SV + K +E
Sbjct: 18 NDFLVSVANQIPQG---KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQE 73
Query: 338 LKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECL 397
+ + + N+ ++ + + + FC S + + + L
Sbjct: 74 --KGVKITTVQSNLADFDIVAD------AWEGIVSIFCHLPSSL----RQQLYPKVYQGL 121
Query: 398 KPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSR 440
KPGG F+ Q+ + + +Q +
Sbjct: 122 KPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELPSLN 164
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 47.0 bits (112), Expect = 7e-06
Identities = 17/140 (12%), Positives = 47/140 (33%), Gaps = 12/140 (8%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
LD+ G G D++ + + + ++ + + R +++ +
Sbjct: 40 DYLDLACGTGNLTENLCPKFKN-TWAVDLSQEMLSEAENKFRS--QGLKPRLACQDISNL 96
Query: 355 ELRSQYEDKALELDLVSCQFC-IHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413
+ ++ DL++C +Y + K + LK GG F+ + ++
Sbjct: 97 NINRKF-------DLITCCLDSTNY-IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKL 148
Query: 414 MARYRRHQSASFGNDVYQVQ 433
+ ++V+
Sbjct: 149 SQVLGNNDFNYDDDEVFYYW 168
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 45.4 bits (108), Expect = 9e-06
Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 20/116 (17%)
Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR 348
G ++D G G G K++ + DI +++++ K +++ + + +
Sbjct: 14 FEGKKGVIVDYGCG-NGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDPKEIP 72
Query: 349 RNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
N D + H + Q + LK G +
Sbjct: 73 DNSV---------------DFILFANSFHD-MDDKQHV---ISEVKRILKDDGRVI 109
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 45.4 bits (107), Expect = 1e-05
Identities = 26/136 (19%), Positives = 45/136 (33%), Gaps = 14/136 (10%)
Query: 290 LGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE------E 343
L ++L +G G + GG +V D +SV + + Y + +
Sbjct: 40 LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVR 99
Query: 344 ARPYRRNVFSAELRSQYEDKALELDLVSC--QFCIHYSFESVQQARCMLKNAAECLKPGG 401
+ F L +K LD + + S E V +L + L PGG
Sbjct: 100 KLDFPSASFDVVL-----EKGT-LDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGG 153
Query: 402 FFVGTVPDSNQIMARY 417
F+ + R+
Sbjct: 154 RFISMTSAAPHFRTRH 169
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 45.8 bits (108), Expect = 2e-05
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 11/116 (9%)
Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR 348
P + LD G+G G + + +E+ K +
Sbjct: 90 PGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMP--------V 141
Query: 349 RNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
A + + DL+ Q+ Y + K+ + L P G+
Sbjct: 142 GKFILASMET-ATLPPNTYDLIVIQWTAIYL--TDADFVKFFKHCQQALTPNGYIF 194
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 45.2 bits (107), Expect = 2e-05
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 13/120 (10%)
Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR 348
G+ L++G G + + K + D+ +I R + +
Sbjct: 48 SSGAVSNGLEIGCA-AGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHIS----WA 102
Query: 349 RNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGG-FFVGTV 407
++ DL+ ++Y E + Q R + N + L PGG G+
Sbjct: 103 ATDILQFSTAE------LFDLIVVAEVLYY-LEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 44.4 bits (105), Expect = 3e-05
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 11/116 (9%)
Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR 348
+ P K LD+G G G + L ++ V D ++SI + + + +
Sbjct: 29 KVVKPGKTLDLGCGNGRNSL-YLAANGYDVDAWDKNAMSIANVERIKSI-ENLDNLHTRV 86
Query: 349 RNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
++ + QY D + + + ++ N C KPGG+ +
Sbjct: 87 VDLNNLTFDRQY-------DFILSTVVLMFLEAKTIPG--LIANMQRCTKPGGYNL 133
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 44.0 bits (104), Expect = 5e-05
Identities = 24/150 (16%), Positives = 48/150 (32%), Gaps = 27/150 (18%)
Query: 268 FNNWTK---------SMLIDEFLTR-CKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVK- 316
F+ + D+F + +LD+G+G G + ++
Sbjct: 10 FDAVSGKYDEQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAG-TGLLSAFLMEKYPE 68
Query: 317 -HVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS-QYEDKALELDLVSCQF 374
D++ +E K R+ + A+ +E+K D+V
Sbjct: 69 ATFTLVDMSEKMLEIAKNRFRGNLK--------VKYIEADYSKYDFEEKY---DMVVSAL 117
Query: 375 CIHYSFESVQQARCMLKNAAECLKPGGFFV 404
IH + + + K + LK G F+
Sbjct: 118 SIH--HLEDEDKKELYKRSYSILKESGIFI 145
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 43.4 bits (102), Expect = 6e-05
Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 2/112 (1%)
Query: 295 KVLDMGSGKGGDMLK--WINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
V+D G G D + G V DI +I + + +L + +
Sbjct: 25 TVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQ 84
Query: 353 SAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
+ + KA+ +L H + L A E L GG
Sbjct: 85 NMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIIT 136
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 43.6 bits (103), Expect = 9e-05
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 28/118 (23%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE--------EARP 346
+VLD+ +G GG + VK VV D+ ++ + E ++ E P
Sbjct: 40 EVLDVATG-GGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP 98
Query: 347 YRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
+ F +V+C+ H+ F + + A LK GG +
Sbjct: 99 FTDERF---------------HIVTCRIAAHH-FPNPASF---VSEAYRVLKKGGQLL 137
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 43.3 bits (102), Expect = 9e-05
Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 15/161 (9%)
Query: 279 EFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEEL 338
+F+ +VLD+ G G L+ G VV D+ + + + +E
Sbjct: 28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKE- 85
Query: 339 KRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFE--SVQQARCMLKNAAEC 396
R + + +V ++++ D V + + R + AE
Sbjct: 86 -RNLKIEFLQGDVLEIAFKNEF-------DAV---TMFFSTIMYFDEEDLRKLFSKVAEA 134
Query: 397 LKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFD 437
LKPGG F+ P + G + + +
Sbjct: 135 LKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWRE 175
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 43.2 bits (102), Expect = 1e-04
Identities = 33/216 (15%), Positives = 68/216 (31%), Gaps = 38/216 (17%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
++ D+G G G L + V D++ +E + + E + +++
Sbjct: 36 RIADIGCGTGTATLLLADHY--EVTGVDLSEEMLEIAQEKAME--TNRHVDFWVQDMREL 91
Query: 355 ELRSQYEDKALELDLVSCQFC-IHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413
EL D ++ ++Y ++ + +AA L GG + V ++
Sbjct: 92 ELPEPV-------DAITILCDSLNY-LQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKM 143
Query: 414 MARYRRHQSASFGNDVYQVQCLFDTSRPPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIA 473
+ A+ + + A VV+ L +F I
Sbjct: 144 ETLFNGKTYATHAEQSSYI------------WFADPGEEPLSVVH---ELTFF-----IE 183
Query: 474 GEFGLKRILKENF--RSFYLRKIK---EHAGLNLLR 504
GE G + E R++ + AG +
Sbjct: 184 GEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCA 219
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 43.0 bits (101), Expect = 1e-04
Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 12/116 (10%)
Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR 348
+ SP KVLD+G G+G + L +++ V D SI E+
Sbjct: 117 KIISPCKVLDLGCGQGRNSL-YLSLLGYDVTSWDHNENSIAFLNETKEK--ENLNISTAL 173
Query: 349 RNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
++ +A ++ Y D + + + ++KN E GG+ +
Sbjct: 174 YDINAANIQENY-------DFIVSTVVFMFLNRERVPS--IIKNMKEHTNVGGYNL 220
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 42.6 bits (100), Expect = 2e-04
Identities = 25/149 (16%), Positives = 47/149 (31%), Gaps = 24/149 (16%)
Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEE-----LKRKEE 343
P + VLD+G G G + G K V+ D++ + + K + ++ E
Sbjct: 41 PDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIE 100
Query: 344 ARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFF 403
+ + ++V +HY S K LK G F
Sbjct: 101 DIAIEPDAY---------------NVVLSSLALHY-IASFDDI---CKKVYINLKSSGSF 141
Query: 404 VGTVPDSNQIMARYRRHQSASFGNDVYQV 432
+ +V + + GN ++
Sbjct: 142 IFSVEHPVFTADGRQDWYTDETGNKLHWP 170
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 42.4 bits (100), Expect = 2e-04
Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 16/111 (14%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
+LD+ G G + + +++ + + KR +A ++ ++
Sbjct: 43 SLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHAR------KRLPDATLHQGDMRDF 95
Query: 355 ELRSQYEDKALELDLVSCQF-CIHYSFESVQQARCMLKNAAECLKPGGFFV 404
L ++ V F + Y ++ ++ + + AE L+PGG V
Sbjct: 96 RLGRKF-------SAVVSMFSSVGY-LKTTEELGAAVASFAEHLEPGGVVV 138
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 42.4 bits (99), Expect = 2e-04
Identities = 32/156 (20%), Positives = 52/156 (33%), Gaps = 12/156 (7%)
Query: 278 DEFLTRCKSSQP-LGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYE 336
+FL R P LD G+G G + + + V DI + KT
Sbjct: 64 RKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLG 123
Query: 337 ELKRKEEARPYRRNVFSAELRS-QYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAE 395
E ++ RN F L+ E D++ Q+ I + + Q L+
Sbjct: 124 EEGKR------VRNYFCCGLQDFTPEPD--SYDVIWIQWVIGHL--TDQHLAEFLRRCKG 173
Query: 396 CLKPGGFFVGTVPDSNQIMARYRRHQSASFGNDVYQ 431
L+P G V + + + S DV +
Sbjct: 174 SLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVR 209
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 42.1 bits (99), Expect = 2e-04
Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 24/115 (20%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK-----EEARPYRR 349
+++D+G G G G +V+ D++ + + + + +
Sbjct: 46 RIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQ 105
Query: 350 NVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
+ F DL +HY V+ + + + L PGG FV
Sbjct: 106 DSF---------------DLAYSSLALHY----VEDVARLFRTVHQALSPGGHFV 141
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 42.5 bits (100), Expect = 2e-04
Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 16/111 (14%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
+LD+ G G + + V ++++ + + +R +A + ++
Sbjct: 53 SLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIAR------RRNPDAVLHHGDMRDF 105
Query: 355 ELRSQYEDKALELDLVSCQF-CIHYSFESVQQARCMLKNAAECLKPGGFFV 404
L ++ V+C F I + + L+ A + P G V
Sbjct: 106 SLGRRF-------SAVTCMFSSIGH-LAGQAELDAALERFAAHVLPDGVVV 148
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 41.8 bits (98), Expect = 2e-04
Identities = 20/150 (13%), Positives = 37/150 (24%), Gaps = 27/150 (18%)
Query: 269 NNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSI 328
+ + FL K VLD G+G L +I+ + +
Sbjct: 3 KTIIRQPQLYRFL---KYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQL 59
Query: 329 EDCKTRYEELKRKEEAR-------PYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFE 381
+ + E K P++ V I + +
Sbjct: 60 KKAENFSRENNFKLNISKGDIRKLPFKDESM---------------SFVYSYGTIFHMRK 104
Query: 382 SVQQARCMLKNAAECLKPGGFFVGTVPDSN 411
+ + + LKPGG +
Sbjct: 105 NDVKE--AIDEIKRVLKPGGLACINFLTTK 132
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 41.8 bits (98), Expect = 3e-04
Identities = 21/129 (16%), Positives = 43/129 (33%), Gaps = 22/129 (17%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK--EEARPYRRNVF 352
+VLD+G G+G + L+ + DI I+ C+ ++ +K E +
Sbjct: 44 RVLDIGCGRG-EFLELCKEEGIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYL 102
Query: 353 SAELRSQYEDKALELDLVSCQFCI-HYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN 411
D V + H E + + +L +K + V P+
Sbjct: 103 ---------------DGVMISHFVEHLDPERLFE---LLSLCYSKMKYSSYIVIESPNPT 144
Query: 412 QIMARYRRH 420
+ + +
Sbjct: 145 SLYSLINFY 153
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 42.0 bits (98), Expect = 3e-04
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 10/112 (8%)
Query: 295 KVLDMGSGKGGD--MLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
V + G + L + +V D +++ + +R++ +
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW 180
Query: 353 SAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
+ R Y DL++ Y + + + + + LKPGG V
Sbjct: 181 KLDTREGY-------DLLTSNGLNIYEPDD-ARVTELYRRFWQALKPGGALV 224
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 41.5 bits (97), Expect = 4e-04
Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 9/116 (7%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
+VLD+ G G D + + G V D + ++ R++E + + A
Sbjct: 60 RVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWN--RRKEPAFDKWVIEEA 116
Query: 355 ELRSQYEDKALEL--DLVSCQF----CIHYSFESVQQARCMLKNAAECLKPGGFFV 404
+ +D D V C + S + R LKN A ++PGG V
Sbjct: 117 NWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 40.5 bits (95), Expect = 5e-04
Identities = 21/114 (18%), Positives = 34/114 (29%), Gaps = 22/114 (19%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE---EARPYRRNV 351
K+LD G G+G G V+ D+ + I+ K + E +
Sbjct: 49 KILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETD 107
Query: 352 FSAELRSQYEDKALELDLVSCQF-CIHYSFESVQQARCMLKNAAECLKPGGFFV 404
F DL+ + + E ++ L N L G V
Sbjct: 108 F---------------DLIVSAGNVMGFLAEDGREP--ALANIHRALGADGRAV 144
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 40.5 bits (95), Expect = 7e-04
Identities = 18/122 (14%), Positives = 32/122 (26%), Gaps = 28/122 (22%)
Query: 292 SPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE--------- 342
+ +D+GSG G + + D + E + +
Sbjct: 43 TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV 102
Query: 343 EARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGF 402
P N DL+ + + + +E V A + LK GG
Sbjct: 103 HNIPIEDNYA---------------DLIVSRGSVFF-WEDVATA---FREIYRILKSGGK 143
Query: 403 FV 404
Sbjct: 144 TY 145
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 40.2 bits (94), Expect = 9e-04
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 28/118 (23%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE--------EARP 346
+VLD+G+G G + V+ + D +E + +E + E+ P
Sbjct: 24 RVLDIGAG-AGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 82
Query: 347 YRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
+ + F D+++C++ H+ F V++A ++ A LK G F+
Sbjct: 83 FPDDSF---------------DIITCRYAAHH-FSDVRKA---VREVARVLKQDGRFL 121
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 40.2 bits (94), Expect = 9e-04
Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 26/129 (20%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE---EARPYRRNV 351
+L++G+G G L+ + V + + + + R E EA P+
Sbjct: 39 SLLEVGAG-TGYWLRRLPYP--QKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGES 95
Query: 352 FSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFF-VGTVPDS 410
F D+V + + E V++ L A L+PGG VG +
Sbjct: 96 F---------------DVVLLFTTLEF-VEDVERV---LLEARRVLRPGGALVVGVLEAL 136
Query: 411 NQIMARYRR 419
+ A YRR
Sbjct: 137 SPWAALYRR 145
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 38.7 bits (90), Expect = 0.002
Identities = 26/147 (17%), Positives = 43/147 (29%), Gaps = 26/147 (17%)
Query: 276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFA-DIASVSIEDCKTR 334
+ +FL L + K+L++G G G + G V A D + + R
Sbjct: 33 TLTKFLGE------LPAGAKILELGCGAGYQAEAMLAAG--FDVDATDGSPELAAEASRR 84
Query: 335 YEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAA 394
+ Y D V C+ + +LK
Sbjct: 85 LGR-------PVRTMLFHQLDAIDAY-------DAVWAHACLLHVPRDELAD--VLKLIW 128
Query: 395 ECLKPGG-FFVGTVPDSNQIMARYRRH 420
LKPGG F+ + + R+
Sbjct: 129 RALKPGGLFYASYKSGEGEGRDKLARY 155
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 39.0 bits (91), Expect = 0.002
Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 18/117 (15%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
++LD+G G G + + V DI S +I +T ++
Sbjct: 33 EILDIGCG-SGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGG-------- 83
Query: 355 ELRSQYEDKALEL-------DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
+ + E+ A L D Q + S ++ ++K LKPG +
Sbjct: 84 KAEFKVEN-ASSLSFHDSSFDFAVMQAFLT-SVPDPKERSRIIKEVFRVLKPGAYLY 138
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 39.4 bits (91), Expect = 0.002
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 329 EDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARC 388
E + + +L R R +V + L D + FC+ + +
Sbjct: 138 ECWQDKERQL-RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQR 196
Query: 389 MLKNAAECLKPGGFFV 404
L + L+PGG +
Sbjct: 197 ALDHITTLLRPGGHLL 212
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 38.2 bits (89), Expect = 0.003
Identities = 18/163 (11%), Positives = 41/163 (25%), Gaps = 20/163 (12%)
Query: 264 YMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADI 323
+ D L G +LD+GSG G + G + +
Sbjct: 16 AEALLGTVISAEDPDRVLIE---PWATGVDGVILDVGSGTGRWTGHLASLGH-QIEGLEP 71
Query: 324 ASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRS-QYEDKALELDLVSCQFCIHYSFES 382
A+ +E + + + + + K + + + +
Sbjct: 72 ATRLVELARQTHPSV-------TFHH----GTITDLSDSPKRW--AGLLAWYSLIHMGPG 118
Query: 383 VQQARCMLKNAAECLKPGGFFVGTVPDSNQIMARYRRHQSASF 425
L ++ GG + + + Y +A
Sbjct: 119 ELPD--ALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYR 159
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 38.3 bits (89), Expect = 0.004
Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 25/126 (19%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE-EARPYRRNVFS 353
+ +++G G G +K + + + E + R + + E P + F
Sbjct: 50 RGVEIGVG-TGRFAVP----LKIKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESF- 103
Query: 354 AELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQI 413
D I + + ++A LK A LK GG+ + + D
Sbjct: 104 --------------DFALMVTTICF-VDDPERA---LKEAYRILKKGGYLIVGIVDRESF 145
Query: 414 MARYRR 419
+ R
Sbjct: 146 LGREYE 151
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 38.7 bits (90), Expect = 0.004
Identities = 24/180 (13%), Positives = 60/180 (33%), Gaps = 20/180 (11%)
Query: 263 VYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFAD 322
Y + + EF TR VL++ +G G +++ G V +
Sbjct: 58 TYRDLIQDADGTSEAREFATRT-----GPVSGPVLELAAGMGRLTFPFLDLGW-EVTALE 111
Query: 323 IASVSIEDCKTRYEE--LKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFC-IHYS 379
+++ + + R E ++ + ++ + L ++ V I+
Sbjct: 112 LSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRF-------GTVVISSGSINE- 163
Query: 380 FESVQQARCMLKNAAECLKPGGFFVGTV--PDSNQIMARYRRHQSASFGNDVYQVQCLFD 437
+ + + E L+PGG F+ ++ ++ + R+ + Y +
Sbjct: 164 LDEADRRGL-YASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHL 222
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 38.3 bits (89), Expect = 0.004
Identities = 21/163 (12%), Positives = 47/163 (28%), Gaps = 28/163 (17%)
Query: 266 RNFNNW-----TKSMLIDEFL-----TRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGV 315
RN++ + ++ P P +L++GS GD +
Sbjct: 6 RNYDQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSF-KGDFTSRLQEHF 64
Query: 316 KHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFC 375
+ + + +I + R ++ + + D +
Sbjct: 65 NDITCVEASEEAISHAQGRLKD----------GITYIHSRFEDAQLPR--RYDNI---VL 109
Query: 376 IHYSFESVQQARCMLKNAAE-CLKPGGFFVGTVPDSNQIMARY 417
H E + +LK + L GG P++N + +
Sbjct: 110 TH-VLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQI 151
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 37.5 bits (87), Expect = 0.005
Identities = 17/109 (15%), Positives = 33/109 (30%), Gaps = 2/109 (1%)
Query: 296 VLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE 355
V+D G G D ++ G K V D+ ++ R +L E + +
Sbjct: 26 VVDATMGNGNDTA-FLAGLSKKVYAFDVQEQALGKTSQRLSDLG-IENTELILDGHENLD 83
Query: 356 LRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
+ +A +L ++ + L+ GG
Sbjct: 84 HYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLA 132
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 37.5 bits (87), Expect = 0.007
Identities = 19/142 (13%), Positives = 42/142 (29%), Gaps = 18/142 (12%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
VL+ G G G ++ + + V + + K + +E + S
Sbjct: 48 NVLEFGVGTG-NLTNKLLLAGRTVYGIEPSREMRMIAKEKL-----PKEFSITEGDFLSF 101
Query: 355 ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV---GTVPDSN 411
E+ + D + + H+ ++ + ++ L GG V D +
Sbjct: 102 EVPTSI-------DTIVSTYAFHH-LTDDEKNV-AIAKYSQLLNKGGKIVFADTIFADQD 152
Query: 412 QIMARYRRHQSASFGNDVYQVQ 433
+ F +Q
Sbjct: 153 AYDKTVEAAKQRGFHQLANDLQ 174
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 37.5 bits (87), Expect = 0.008
Identities = 22/133 (16%), Positives = 38/133 (28%), Gaps = 23/133 (17%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
+VLD+G G G +L+ + V D ++ + A
Sbjct: 55 RVLDLGCG-EGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGE---------VHLASYA 104
Query: 355 ELRSQYEDKALELDLVSCQFCIHY-SFESVQQARCMLKNAAECLKPGGFFV------GTV 407
+L + DL+ F + + + L L PGG V +V
Sbjct: 105 QLAEAKVPVGKDYDLICANFALLHQDIIEL------LSAMRTLLVPGGALVIQTLHPWSV 158
Query: 408 PDSNQIMARYRRH 420
D +
Sbjct: 159 ADGDYQDGWREES 171
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 36.8 bits (85), Expect = 0.015
Identities = 25/153 (16%), Positives = 48/153 (31%), Gaps = 22/153 (14%)
Query: 268 FNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGD--MLKWINGGVKHVVFADIAS 325
+N+ S L++ + P+ ++D G G G +L + D
Sbjct: 5 YNDDYVSFLVNTVW-------KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGE 57
Query: 326 VSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQ 385
+ + + + L E A + D + D+ C + + +
Sbjct: 58 TLLAEARELFRLLPYDSEFL-----EGDAT-EIELND---KYDIAICHAFLLH----MTT 104
Query: 386 ARCMLKNAAECLKPGGFFVGTVPDSNQIMARYR 418
ML+ +K GG + P MA Y
Sbjct: 105 PETMLQKMIHSVKKGGKIICFEPHWISNMASYL 137
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 36.0 bits (83), Expect = 0.024
Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 27/137 (19%)
Query: 290 LGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK---RKEEAR- 345
+ +VLD+G G G ++ V DI+ V I+ K R E K +
Sbjct: 51 VKKEAEVLDVGCG-DGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSS 109
Query: 346 -PYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
P+ F + + + + E +A L LK G+
Sbjct: 110 LPFENEQF---------------EAIMAINSLEW-TEEPLRA---LNEIKRVLKSDGYAC 150
Query: 405 GTV--PDSNQIMARYRR 419
+ P + Y R
Sbjct: 151 IAILGPTAKPRENSYPR 167
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 35.6 bits (82), Expect = 0.031
Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 13/117 (11%)
Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR 348
L + D+G G GG + V D S I+ + +
Sbjct: 43 NLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIV 102
Query: 349 RNVFSAELRSQYEDKALELDLVSCQFCI-HYSFESVQQARCMLKNAAECLKPGGFFV 404
++ + ++ ELDL+ + I + FE L + LK GG+
Sbjct: 103 GSMDDLP----FRNE--ELDLIWSEGAIYNIGFER------GLNEWRKYLKKGGYLA 147
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 35.6 bits (82), Expect = 0.032
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 21/129 (16%)
Query: 290 LGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEAR--PY 347
L +P +VLD+G G G ++ VV D + +E + + + + +A P+
Sbjct: 52 LKNPCRVLDLGGG-TGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPF 110
Query: 348 RRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407
F + V + V+ L P G + TV
Sbjct: 111 PSGAF---------------EAV---LALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV 152
Query: 408 PDSNQIMAR 416
+ + +
Sbjct: 153 DNFYTFLQQ 161
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 35.6 bits (82), Expect = 0.039
Identities = 30/145 (20%), Positives = 45/145 (31%), Gaps = 19/145 (13%)
Query: 289 PLGSPIKVLDMGSGKG--GDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARP 346
P +++D+G G G G L N VVF D + +++ + ++
Sbjct: 219 PENLEGEIVDLGCGNGVIGLTLLDKNPQA-KVVFVDESPMAVASSR---LNVETNMPEAL 274
Query: 347 YRRNVFSAELRSQYEDKALELDLVSCQFC---IHYSFESVQQ-ARCMLKNAAECLKPGGF 402
R S E + V C H A M +A CLK G
Sbjct: 275 DRCEFMINNALSGVEPF--RFNAV---LCNPPFHQQHALTDNVAWEMFHHARRCLKINGE 329
Query: 403 FVGTVPDSNQIMARYRRHQSASFGN 427
V + + Y FGN
Sbjct: 330 LY-IVANRHL---DYFHKLKKIFGN 350
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 34.9 bits (80), Expect = 0.051
Identities = 27/141 (19%), Positives = 45/141 (31%), Gaps = 25/141 (17%)
Query: 290 LGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK-----RKEEA 344
+ KVLD+ G G + VV DI+ I + + + +A
Sbjct: 36 MKKRGKVLDLACG-VGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDA 94
Query: 345 R--PYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGF 402
R + F D V I + FE ++ + K LKP G
Sbjct: 95 RKLSFEDKTF---------------DYVIFIDSIVH-FEPLELNQV-FKEVRRVLKPSGK 137
Query: 403 FVGTVPDSNQIMARYRRHQSA 423
F+ D +++ R +
Sbjct: 138 FIMYFTDLRELLPRLKESLVV 158
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 34.5 bits (79), Expect = 0.055
Identities = 28/177 (15%), Positives = 54/177 (30%), Gaps = 38/177 (21%)
Query: 276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRY 335
L R ++ G VL++ SG G + ++G V D ++ I
Sbjct: 33 AAPAALERLRAGNIRG---DVLELASG-TGYWTRHLSGLADRVTALDGSAEMIA------ 82
Query: 336 EELKRKEEARPYRRNVFSAELRSQYEDKALEL------DLVSCQFCIHYSFESVQQARCM 389
EA R + + E R + + D V + + + +A
Sbjct: 83 -------EAG--RHGLDNVEFR---QQDLFDWTPDRQWDAVFFAHWLAHVPDDRFEA--F 128
Query: 390 LKNAAECLKPGG--FFVGTVPDSNQIMARYRRHQSASFGNDVYQVQCLFDTSRPPPL 444
++ + PGG FV ++ + +V + L D +
Sbjct: 129 WESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEP------EVAVRRTLQDGRSFRIV 179
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 34.3 bits (79), Expect = 0.075
Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 23/117 (19%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRK---EEARPYRRNV 351
+VLD+G G + I V + + E K + + + PY
Sbjct: 35 EVLDIGCS-SGALGAAIKENGTRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQ 93
Query: 352 FSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVP 408
F D V + + + +++ +K G + ++P
Sbjct: 94 F---------------DCVIFGDVLEH----LFDPWAVIEKVKPYIKQNGVILASIP 131
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 34.3 bits (78), Expect = 0.10
Identities = 17/140 (12%), Positives = 52/140 (37%), Gaps = 21/140 (15%)
Query: 295 KVLDMGSGKGG--DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
++D+G G G + + ++ +D+++ I+ + E + ++ +
Sbjct: 39 LLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFK--IS 96
Query: 353 SAELRSQYEDKALE---LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFF------ 403
S++ +++ +D+++ C H+ F+ + ++A L+ G
Sbjct: 97 SSDDFKFLGADSVDKQKIDMITAVECAHW-FDFEK----FQRSAYANLRKDGTIAIWGYA 151
Query: 404 ---VGTVPDSNQIMARYRRH 420
P+ + +M
Sbjct: 152 DPIFPDYPEFDDLMIEVPYG 171
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 34.4 bits (79), Expect = 0.10
Identities = 22/182 (12%), Positives = 51/182 (28%)
Query: 77 EEPEEETEEMMAIRSITEAGFSEAKAEEFHRKRNKPRVQRETVEEAAVRSIPGHGYSHSI 136
+ PE+ETE + E ++ + + + E +
Sbjct: 20 QTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVA 79
Query: 137 GEQQDISQHSSHAQRTAEEMLAIRSITGESFDLEDAEQFIQETVIEQNVEDSEEQRLTER 196
++ + AQ + E +L E E V + + E
Sbjct: 80 ESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEAVSPEEWQAEAETVEIVE 139
Query: 197 PVEDDTEETTITTTTGEDSTSLGASQSPCSDQSELTNQEAGLGQTVAEHYNQKKNVGTEL 256
E++ + IT E + + A++ ++ + K+ L
Sbjct: 140 AAEEEAAKEEITDEELETALAAEAAEEAVMVVPPAEEEQPVEEIAQEQEKPTKEGFFARL 199
Query: 257 RK 258
++
Sbjct: 200 KR 201
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 34.0 bits (78), Expect = 0.11
Identities = 27/122 (22%), Positives = 43/122 (35%), Gaps = 20/122 (16%)
Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELK-RKEEARPY 347
+LD+G G G + + I V+ D A+ IE + Y L +AR +
Sbjct: 54 NPQPGEFILDLGCG-TGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNF 112
Query: 348 RRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTV 407
R L D V +H+ V++ + + + LK GG FV
Sbjct: 113 R---VDKPL-----------DAVFSNAMLHW----VKEPEAAIASIHQALKSGGRFVAEF 154
Query: 408 PD 409
Sbjct: 155 GG 156
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.12
Identities = 10/84 (11%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 78 EPEEETEEMMAIRSITEAGFSEAKAEEFHRKRNKPRVQRETVEEAAVRSIPGHGYSHSIG 137
+ + T+E +IR + E + + +V + E A + + ++
Sbjct: 76 QADRLTQEPESIRK-----WREEQRKRLQELDAASKVMEQEWREKAKKDL--EEWNQRQS 128
Query: 138 EQQDISQHSSHAQRTAEEMLAIRS 161
EQ + ++ + + +
Sbjct: 129 EQ--VEKNKINNRIADKAFYQQPD 150
Score = 32.1 bits (72), Expect = 0.31
Identities = 12/74 (16%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 60 SEGNATYEDEEYSVQYSEEPEEETEEMMAIRSITEAGFSE-AKAE--EFHRKRN----KP 112
++ + ++ E ++ EE + +E+ A + E + E AK + E++++++ K
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 113 RVQRETVEEAAVRS 126
++ ++A +
Sbjct: 135 KINNRIADKAFYQQ 148
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics,
structural genomics consortium; HET: SAH; 1.70A {Homo
sapiens} SCOP: c.66.1.15
Length = 263
Score = 33.1 bits (75), Expect = 0.20
Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 9/102 (8%)
Query: 309 KWINGGVK---HVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAELRSQYEDKAL 365
KW+ A +E R+EE ++E+ R + V ++
Sbjct: 96 KWLKKEPGAYDWTPAVKFAC-ELEGNSGRWEE--KEEKLRAAVKRVLKCDVHLGNPLAPA 152
Query: 366 EL---DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
L D V + + S+ R L N A LKPGG V
Sbjct: 153 VLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLV 194
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 33.0 bits (75), Expect = 0.20
Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 15/108 (13%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
V+DM +G G L G V+ + + + K ++ Y +
Sbjct: 128 LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF 187
Query: 355 ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGF 402
+ + + + + +F + A K G
Sbjct: 188 PGENIADRILMGYVVRTHEF---------------IPKALSIAKDGAI 220
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 33.0 bits (75), Expect = 0.22
Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 32/126 (25%)
Query: 295 KVLDMGSGKGG---DMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKE--------E 343
KVL+ G G G + K + DI+ S+E + E+ K
Sbjct: 40 KVLEAGCGIGAQTVILAKNNPDA--EITSIDISPESLEKARENTEKNGIKNVKFLQANIF 97
Query: 344 ARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFF 403
+ P+ + F D + F + + +S ++A LK+ + LKPGG
Sbjct: 98 SLPFEDSSF---------------DHIFVCFVLEH-LQSPEEA---LKSLKKVLKPGGTI 138
Query: 404 VGTVPD 409
D
Sbjct: 139 TVIEGD 144
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus}
PDB: 2iip_A* 3rod_A*
Length = 265
Score = 33.1 bits (75), Expect = 0.23
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 339 KRKEEARPYRRNVFSAELRSQYEDKALEL---DLVSCQFCIHYSFESVQQARCMLKNAAE 395
+++E+ R + V ++ + L D + C+ + + R L+N
Sbjct: 127 EKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGS 186
Query: 396 CLKPGGFFVG 405
LKPGGF V
Sbjct: 187 LLKPGGFLVM 196
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 32.9 bits (75), Expect = 0.23
Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR 348
L K+ D+G G GG L + + D+ IE + + +
Sbjct: 43 ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGIT 102
Query: 349 RNVFSAELRSQYEDKALELDLVSCQFCI-HYSFESVQQARCMLKNAAECLKPGGFFV 404
++ ++++ ELDL+ + I + FE + ++ LK GGF
Sbjct: 103 GSM----DNLPFQNE--ELDLIWSEGAIYNIGFERG------MNEWSKYLKKGGFIA 147
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 32.6 bits (74), Expect = 0.29
Identities = 20/123 (16%), Positives = 33/123 (26%), Gaps = 27/123 (21%)
Query: 289 PLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEAR--- 345
P G L++G G G + + + D + +E + + + RK +
Sbjct: 36 PKGEEPVFLELGVG-TGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQAD 94
Query: 346 ----PYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGG 401
P V H + L A LKPGG
Sbjct: 95 ARAIPLPDESV---------------HGVIVVHLWHL-VPDWPKV---LAEAIRVLKPGG 135
Query: 402 FFV 404
+
Sbjct: 136 ALL 138
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 33.0 bits (75), Expect = 0.30
Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 30/161 (18%)
Query: 275 MLIDEFLTRCKSSQPLGSPIKVLDMGSGKG--GDMLKWINGGVKHVVFADIASVSIEDCK 332
+L++ R G +VLD+G+G G L + VV + S+ +
Sbjct: 218 LLLEALQERLGPEGVRGR--QVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQ 272
Query: 333 TRYEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFC---IHYSFESVQQ-ARC 388
E +A+ +V A + D++ H + A+
Sbjct: 273 KGLEANA--LKAQALHSDVDEAL------TEEARFDII---VTNPPFHVGGAVILDVAQA 321
Query: 389 MLKNAAECLKPGG--FFVGTVPDSNQIMARYRRHQSASFGN 427
+ AA L+PGG F V +Y FG
Sbjct: 322 FVNVAAARLRPGGVFFLVS------NPFLKYEPLLEEKFGA 356
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 32.3 bits (73), Expect = 0.31
Identities = 14/117 (11%), Positives = 26/117 (22%), Gaps = 21/117 (17%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
+VL+ G G G D + ++ + ++
Sbjct: 51 RVLEAGCG-HGPDAARFGPQAARWAAYDFSPELLKLARANAPHA---------DVYEWNG 100
Query: 355 ELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSN 411
+ A L+ S + E P F+ P N
Sbjct: 101 KGELPAGLGA-PFGLI-------VSRRGPTSV---ILRLPELAAPDAHFLYVGPRLN 146
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 32.0 bits (73), Expect = 0.36
Identities = 20/120 (16%), Positives = 32/120 (26%), Gaps = 29/120 (24%)
Query: 295 KVLDMGSGKGGDMLKW--INGGVKHVVFADIASVSIEDCKTRYEELKRK--------EEA 344
VLD+G+G G + + G V D+ + + +L K E
Sbjct: 40 TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK 99
Query: 345 RPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
P N D + F H + L+ KP +
Sbjct: 100 IPLPDNTV---------------DFIFMAFTFHE-LSEPLKF---LEELKRVAKPFAYLA 140
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 32.0 bits (72), Expect = 0.38
Identities = 27/129 (20%), Positives = 41/129 (31%), Gaps = 20/129 (15%)
Query: 281 LTRCKSSQPLGSPIKVLDMGSGKGGDMLKWINGGVKHVVFADIAS-----VSIEDCKTRY 335
+ + P+ VL +G G HV +DI IE
Sbjct: 62 IMNGLKNFPIKPGKSVLYLGIASGTT--------ASHV--SDIVGWEGKIFGIEFSPRVL 111
Query: 336 EELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAE 395
EL E R N+ + ++ LV I QA+ ++ NA
Sbjct: 112 RELVPIVEERR---NIVPILGDATKPEEYR--ALVPKVDVIFEDVAQPTQAKILIDNAEV 166
Query: 396 CLKPGGFFV 404
LK GG+ +
Sbjct: 167 YLKRGGYGM 175
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 32.1 bits (73), Expect = 0.41
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 18/135 (13%)
Query: 276 LIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWI-NGGVKHVVFADIASVSIEDCKTR 334
+ + + L K LD+G+G GG + GV + +IA V + +
Sbjct: 66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEY 124
Query: 335 YEELKRKEEARPYRRNVFSAELRSQYEDKALELDLVSCQFCIHYSFES---VQQARCMLK 391
+ + + LE+ + +S ++ + +
Sbjct: 125 NNQAGLADNITVKYGS-------------FLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQ 171
Query: 392 NAAECLKPGGFFVGT 406
A LKP G T
Sbjct: 172 ECARVLKPRGVMAIT 186
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 31.7 bits (72), Expect = 0.58
Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 18/114 (15%)
Query: 295 KVLDMGSGKGGDMLKWI-NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFS 353
+VLD+G G G ++ V V I+ + R +
Sbjct: 64 RVLDVGCGIGKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYAD--- 119
Query: 354 AELRSQYEDKALELDLVSCQFCIHYSFES---VQQARCMLKNAAECLKPGGFFV 404
A++L F ++ ES + L+ A L+PGG
Sbjct: 120 ----------AMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVA 163
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium; 2.80A {Sulfolobus solfataricus}
Length = 197
Score = 31.2 bits (71), Expect = 0.71
Identities = 29/150 (19%), Positives = 48/150 (32%), Gaps = 45/150 (30%)
Query: 380 FESVQQARCMLKNAAECLKPGGFFVGTVP-----DSNQIMARYRRHQSASFGNDVYQVQC 434
S++ K+ L +G +P D N+I+ ++ + A V
Sbjct: 74 STSLKLGLRFFKDYDAVL----VALGDMPFVTKEDVNKIINTFKPNCKA--------VIP 121
Query: 435 LFDTSR-PPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKENFRSFYLRK 493
R P L F +E++ G+ G + IL + + L
Sbjct: 122 THKGERGNPVLISKSL----------------FNEIEKLRGDVGARVILNKI-KIEELCF 164
Query: 494 IKEHAG----------LNLLRKMNALEGHH 513
I+ G L LR + LE HH
Sbjct: 165 IECSEGVLIDIDKKEDLMRLRDFHPLEHHH 194
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.8 bits (69), Expect = 0.81
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 17/66 (25%)
Query: 439 SRPP-PLFGAKYDFNLEGVVNCPE------FLVYFPLL-ERIAGEFGLKRILKEN----- 485
+R + NL V+ CPE +V + + GL +L +
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGL--VLSDKLVDTR 60
Query: 486 --FRSF 489
+R+F
Sbjct: 61 SEWRTF 66
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 31.3 bits (70), Expect = 0.81
Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 5/122 (4%)
Query: 295 KVLDMGSGKGGDM--LKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
VL+ GSG GG L G V+ ++ + K Y+ + +
Sbjct: 108 TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD 167
Query: 353 SAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPDSNQ 412
+ + + A E + + L LK GG V + Q
Sbjct: 168 NVDFIHKDISGATEDIKSLTFDAVALDMLNPHVT---LPVFYPHLKHGGVCAVYVVNITQ 224
Query: 413 IM 414
++
Sbjct: 225 VI 226
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 30.9 bits (69), Expect = 0.87
Identities = 18/115 (15%), Positives = 45/115 (39%), Gaps = 12/115 (10%)
Query: 296 VLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSAE 355
+D+G+G G ++ K + + + I+ K ++ +K +P + + +
Sbjct: 28 HIDLGTGDGRNIYKLA------INDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVV 81
Query: 356 -LRSQYEDKALELDLVSCQFCIHYSFESVQQARC-----MLKNAAECLKPGGFFV 404
+ + E EL ++ I + + ++ + +L N A+ K F
Sbjct: 82 FVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFE 136
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism,
ATP-binding, nucleotide biosynthesis,
nucleotide-binding, transferase; HET: ADP; 1.9A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Length = 201
Score = 30.6 bits (70), Expect = 1.0
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 169 LEDAEQFIQETVIEQNVEDSE-EQRLTERPVEDDTEET 205
LE I + V+E V + +RL R DDT++
Sbjct: 120 LERRGTDI-DAVLEFRVSEEVLLERLKGRGRADDTDDV 156
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 30.0 bits (68), Expect = 2.1
Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 15/116 (12%)
Query: 292 SPIKVLDMGSGKGGDMLKWI---NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYR 348
P+KVLD+ + G + N + D ASV +E K
Sbjct: 165 EPLKVLDISASHGL-FGIAVAQHNPNAEIFGV-DWASV-LEVAKENARIQGVASRYHTIA 221
Query: 349 RNVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
+ F + + Y DLV +H V +L+ L G +
Sbjct: 222 GSAFEVDYGNDY-------DLVLLPNFLH--HFDVATCEQLLRKIKTALAVEGKVI 268
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 29.5 bits (66), Expect = 2.6
Identities = 26/130 (20%), Positives = 48/130 (36%), Gaps = 24/130 (18%)
Query: 291 GSPIKVLDMGSGKGGDMLKWINGGVKHVVFA-DIASVSIEDCKTRYEELKRKEEARPYRR 349
VLD+G G+G + + + F D++ V+I+ RY ++
Sbjct: 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQV---------TF 134
Query: 350 NVFSAELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFVGTVPD 409
V S+ R + D ++ D + + A C + A +KPGG+ + P
Sbjct: 135 CVASSH-RLPFSDTSM--DAIIRIY-----------APCKAEELARVVKPGGWVITATPG 180
Query: 410 SNQIMARYRR 419
+M
Sbjct: 181 PRHLMELKGL 190
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 29.3 bits (65), Expect = 3.5
Identities = 32/159 (20%), Positives = 54/159 (33%), Gaps = 27/159 (16%)
Query: 253 GTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLKWIN 312
G L K + Y R +N +S L + + + P+ KVL +G+ G
Sbjct: 40 GERLIKYEGVEY-REWN-AFRSKLAG-AILKGLKTNPIRKGTKVLYLGAASGTT------ 90
Query: 313 GGVKHV---VFADIASVSIEDCKTRYEELKRKEEARPYRRNVF----SAELRSQYEDKAL 365
+ HV + + + +E EL + RP N+F A Y+
Sbjct: 91 --ISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRP---NIFPLLADARFPQSYKSVVE 145
Query: 366 ELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
+D++ Q + NA LK G +
Sbjct: 146 NVDVLYVDIAQPD------QTDIAIYNAKFFLKVNGDML 178
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 29.3 bits (66), Expect = 3.5
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 152 TAEEMLAIRSITGESFDLEDAEQFIQE 178
E++ + + E DL ++EQF
Sbjct: 60 EPEQLKMLSELKEEYDDLAESEQFGVV 86
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium
tuberculosis H37RV} PDB: 2we9_A 2yes_A
Length = 197
Score = 28.8 bits (65), Expect = 4.3
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 17/55 (30%)
Query: 432 VQCLFDTSR-PPPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN 485
+ C + P F F L R+ G+ G+ +++
Sbjct: 127 MVCRYADGVGHPFWFSRTV----------------FGELARLHGDKGVWKLVHSG 165
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A
{Mycobacterium SP}
Length = 199
Score = 28.5 bits (64), Expect = 4.5
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 16/44 (36%)
Query: 442 PPLFGAKYDFNLEGVVNCPEFLVYFPLLERIAGEFGLKRILKEN 485
P F L + G+ G+ R+++
Sbjct: 138 PFWVSRGV----------------FGDLAELHGDKGVWRLIESG 165
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 29.1 bits (66), Expect = 4.8
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 384 QQARCMLKNAAECLKPGGFFV 404
Q+ +L LK GG V
Sbjct: 352 LQSE-ILDAIWPHLKTGGTLV 371
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 29.1 bits (65), Expect = 5.0
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 152 TAEEMLAIRSITGESFDLEDAEQFIQE 178
E++ + + E DL ++EQF
Sbjct: 131 EPEQLKMLSELKEEYDDLAESEQFGVV 157
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 28.5 bits (63), Expect = 5.0
Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 22/116 (18%)
Query: 295 KVLDMGSGKGGDMLKW--INGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
KVL +G+ G + I G V + + S D ++ R N+
Sbjct: 80 KVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK----------RTNII 129
Query: 353 S----AELRSQYEDKALELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
A +Y +D++ Q R + NA L+ GG FV
Sbjct: 130 PVIEDARHPHKYRMLIAMVDVIFADVAQP------DQTRIVALNAHTFLRNGGHFV 179
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 29.1 bits (65), Expect = 5.1
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 152 TAEEMLAIRSITGESFDLEDAEQFIQE 178
++ + E + A++F+ E
Sbjct: 142 EKSDIDLLEEHKHELDRMAKADRFLFE 168
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 28.6 bits (64), Expect = 5.2
Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 19/114 (16%)
Query: 295 KVLDMGSGKGGDMLKWI--NGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVF 352
++LD+GSG G ML + G+ D++S+ K R EEL E +
Sbjct: 39 RILDLGSGSGE-MLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHND-- 94
Query: 353 SAELRSQYEDKALE--LDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
D+ +C + + A+ LKPGG +
Sbjct: 95 -------AAGYVANEKCDVAACV----GATWIAGGFAGAEELLAQSLKPGGIML 137
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 28.5 bits (63), Expect = 5.7
Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 23/160 (14%)
Query: 250 KNVGTELRKNSRIVYMRNFNNWTKSMLIDEFLTRCKSSQPLGSPIKVLDMGSGKGGDMLK 309
K V E R +N KS L + K P+ K+L +G+ G
Sbjct: 34 KKVYDEKIIKIGDEEYRIWN-PNKSKLAAAIIKGLKV-MPIKRDSKILYLGASAGTTPSH 91
Query: 310 WINGGVKHVVFA-DIASVSIEDCKTRYEELKRKEEARPYRRNV----FSAELRSQYEDKA 364
+ K +V+A + A + + E R N+ A +Y +
Sbjct: 92 VADIADKGIVYAIEYAPRIMRELLDACAE----------RENIIPILGDANKPQEYANIV 141
Query: 365 LELDLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
++D++ QA ++KNA LK GG+ +
Sbjct: 142 EKVDVIYEDVAQPN------QAEILIKNAKWFLKKGGYGM 175
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 28.6 bits (64), Expect = 6.5
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 295 KVLDMGSGKGGDMLKWINGGVKHVVFADIASVSIEDCKTRYEELKRKEEARPYRRNVFSA 354
+VLD+ + GG + G V+ D + +IE K + ++ + + F
Sbjct: 220 RVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE 279
Query: 355 ELRSQYEDKALELDLVSC---QFCIH-YSFESVQQA-RCMLKNAAECLKPGGFFV 404
+ + + K + D+V F H ++ +A + +K GG V
Sbjct: 280 -ME-KLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILV 332
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 28.1 bits (63), Expect = 8.3
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 368 DLVSCQFCIHYSFESVQQARCMLKNAAECLKPGGFFV 404
D+V C+H + ++AR ++ +AA +KPGG +
Sbjct: 250 DVVMLNDCLH--YFDAREAREVIGHAAGLVKPGGALL 284
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.381
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,038,186
Number of extensions: 549036
Number of successful extensions: 1427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1351
Number of HSP's successfully gapped: 113
Length of query: 597
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 498
Effective length of database: 3,937,614
Effective search space: 1960931772
Effective search space used: 1960931772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.4 bits)