BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17743
(618 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|350404638|ref|XP_003487171.1| PREDICTED: DNA topoisomerase 1-like [Bombus impatiens]
Length = 1028
Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/487 (79%), Positives = 433/487 (88%), Gaps = 5/487 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLSQDAEE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 509 GKEMKLSQDAEEVATFYARMLDHDYTTKSAFNNNFFHDWREVMTESERAKINDLSKCNFK 568
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH+YFVQKSEERKAM+KEEK+KIK+ NE I KEYG C IDGHKEKIGNF+IEPPGLFRG
Sbjct: 569 EMHSYFVQKSEERKAMTKEEKQKIKETNEQIQKEYGFCIIDGHKEKIGNFKIEPPGLFRG 628
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLKRRV EDI+INCSKDS +P PPPGHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 629 RGEHPKMGKLKRRVMPEDILINCSKDSNIPKPPPGHKWKEVRHDPNVTWLASWTENIQGQ 688
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+ I+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 689 VKYVMLNPSSKLKGEKDWQKYETARKLAQLIDKIRAEYREDWKSKEMRIRQRAVALYFID 748
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KDGK YVV FDFLGKDSIRYYNEVPVE
Sbjct: 749 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDGKEYVVVFDFLGKDSIRYYNEVPVE 808
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNLQLF+ENK SDDLFDRLNT+V+NKHL+ELMEGLTAKVFRTYNAS TLQQQL++
Sbjct: 809 KRVFKNLQLFMENKSPSDDLFDRLNTTVMNKHLNELMEGLTAKVFRTYNASWTLQQQLDK 868
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L +PD +EAEKIL+YNRANRAVA+LCNHQRSVPK+H KSM NLK KI K++ + +AE A
Sbjct: 869 LTNPDDTEAEKILSYNRANRAVAILCNHQRSVPKTHAKSMENLKAKIEAKKQAISEAEHA 928
Query: 425 LKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
+K+AK+ + + K + +KKK AL RLKEQL KLEVQ TDKEENK IALGTSKLNYLD
Sbjct: 929 VKEAKRDAKHGSVKEKVVYEKKKKALDRLKEQLTKLEVQATDKEENKEIALGTSKLNYLD 988
Query: 480 PRISVTW 486
PRI+V W
Sbjct: 989 PRITVAW 995
Score = 214 bits (546), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 101/116 (87%), Positives = 108/116 (93%), Gaps = 2/116 (1%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+ I+KIR Y+ D
Sbjct: 672 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQLIDKIRAEYRED 729
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KD K
Sbjct: 730 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDGK 785
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA D+VF
Sbjct: 1005 KIYNKTQRDKFRWAIDMAGPDYVF 1028
>gi|340720974|ref|XP_003398903.1| PREDICTED: DNA topoisomerase 1-like [Bombus terrestris]
Length = 1027
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/487 (79%), Positives = 431/487 (88%), Gaps = 5/487 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLSQDAEE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 508 GKEMKLSQDAEEVATFYARMLDHDYTTKSAFNNNFFHDWREVMTESERAKINDLSKCNFK 567
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH+YFVQKSEERKAM+KEEK+KIK+ NE I KEYG C IDGHKEKIGNF+IEPPGLFRG
Sbjct: 568 EMHSYFVQKSEERKAMTKEEKQKIKEMNEQIQKEYGFCIIDGHKEKIGNFKIEPPGLFRG 627
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLKRRV EDI+INCSKDS +P PPPGHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 628 RGEHPKMGKLKRRVMPEDILINCSKDSNIPKPPPGHKWKEVRHDPNVTWLASWTENIQGQ 687
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+ I+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 688 VKYVMLNPSSKLKGEKDWQKYETARKLAQLIDKIRAEYREDWKSKEMRIRQRAVALYFID 747
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KDGK YVV FDFLGKDSIRYYNEVPVE
Sbjct: 748 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDGKEYVVVFDFLGKDSIRYYNEVPVE 807
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNLQLF+ENK SDDLFDRLNT+V+NKHL+ELMEGLTAKVFRTYNAS TLQQQL++
Sbjct: 808 KRVFKNLQLFMENKSPSDDLFDRLNTTVMNKHLNELMEGLTAKVFRTYNASWTLQQQLDK 867
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L +PD +EAEKIL+YNRANRAVA+LCNHQRSVPK+H KSM NLK KI K++ + + E A
Sbjct: 868 LTNPDDTEAEKILSYNRANRAVAILCNHQRSVPKTHAKSMENLKAKIEAKKQAISETEHA 927
Query: 425 LKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
+K+AK+ + + K + +KKK L RLKEQL KLEVQ TDKEENK IALGTSKLNYLD
Sbjct: 928 VKEAKRDAKHGSVKEKVVYEKKKKTLDRLKEQLTKLEVQATDKEENKEIALGTSKLNYLD 987
Query: 480 PRISVTW 486
PRI+V W
Sbjct: 988 PRITVAW 994
Score = 214 bits (546), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 101/116 (87%), Positives = 108/116 (93%), Gaps = 2/116 (1%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+ I+KIR Y+ D
Sbjct: 671 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQLIDKIRAEYRED 728
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KD K
Sbjct: 729 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDGK 784
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA ++VF
Sbjct: 1004 KIYNKTQRDKFRWAIDMAGPNYVF 1027
>gi|380027021|ref|XP_003697235.1| PREDICTED: DNA topoisomerase 1-like [Apis florea]
Length = 1024
Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/488 (79%), Positives = 432/488 (88%), Gaps = 5/488 (1%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GKEMKLSQDAEE+ATFYARM++H+YTTK AFN+NF DWR+ MTE ERA I DLSKC+F
Sbjct: 504 NGKEMKLSQDAEEVATFYARMLDHDYTTKPAFNSNFFHDWREVMTESERAKIVDLSKCNF 563
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
+++HAYF+QKSEERKAM+KEEK+KIK++NE I KEYG C IDGHKEKIGNF+IEPPGLFR
Sbjct: 564 KEIHAYFIQKSEERKAMTKEEKQKIKEKNEEIQKEYGYCIIDGHKEKIGNFKIEPPGLFR 623
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRGEHPKMGKLK+RV EDI+INCSKDS +P PPPGHKWKE+RHD VTWLASWTEN+QG
Sbjct: 624 GRGEHPKMGKLKKRVMPEDILINCSKDSNIPKPPPGHKWKEIRHDPNVTWLASWTENIQG 683
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
QVKY+MLNPSSKLKGEKDWQKYE ARKLA+ I+KIR Y+ DWKSKEMRIRQRAVALYFI
Sbjct: 684 QVKYVMLNPSSKLKGEKDWQKYEIARKLAQLIDKIRAEYREDWKSKEMRIRQRAVALYFI 743
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KDGK YVV FDFLGKDSIRYYNEVPV
Sbjct: 744 DKLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDGKEYVVVFDFLGKDSIRYYNEVPV 803
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK SDDLFDRLNT+V+NKHL+ELMEGLTAKVFRTYNAS TLQQQL+
Sbjct: 804 EKRVFKNLQLFMENKSPSDDLFDRLNTTVMNKHLNELMEGLTAKVFRTYNASWTLQQQLD 863
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L +PD +EAEKIL+YNRANRAVA+LCNHQRSVPK+H KSM NLK KI K++ + DAE
Sbjct: 864 KLTNPDDTEAEKILSYNRANRAVAILCNHQRSVPKTHAKSMENLKAKIEAKKQAINDAEL 923
Query: 424 ALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
A+KDAK+ + K +KKK AL RLKEQL KLEVQ TDKEENK IALGTSKLNYL
Sbjct: 924 AVKDAKRDAKHGSVKEKVTYEKKKKALDRLKEQLTKLEVQATDKEENKEIALGTSKLNYL 983
Query: 479 DPRISVTW 486
DPRI+V W
Sbjct: 984 DPRITVAW 991
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 100/116 (86%), Positives = 107/116 (92%), Gaps = 2/116 (1%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYE ARKLA+ I+KIR Y+ D
Sbjct: 668 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYEIARKLAQLIDKIRAEYRED 725
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KD K
Sbjct: 726 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDGK 781
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA D+VF
Sbjct: 1001 KIYNKTQRDKFRWAIDMAGPDYVF 1024
>gi|307182085|gb|EFN69463.1| DNA topoisomerase 1 [Camponotus floridanus]
Length = 1038
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/488 (78%), Positives = 430/488 (88%), Gaps = 5/488 (1%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GKE KLSQDAEE+ATFYARM++H+YTTK+AFN NF DWR+ MTE ERA ITDLSKC+F
Sbjct: 518 NGKETKLSQDAEEVATFYARMLDHDYTTKDAFNNNFFHDWREVMTESERAKITDLSKCNF 577
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
++MHAYF+QKSEERKAM+KEEK+KIK++N+ I KEYG C IDGHKEKIGNF+IEPPGLFR
Sbjct: 578 KEMHAYFLQKSEERKAMTKEEKQKIKEKNDEIQKEYGFCVIDGHKEKIGNFKIEPPGLFR 637
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QG
Sbjct: 638 GRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDPNVTWLASWTENIQG 697
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
QVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFI
Sbjct: 698 QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFI 757
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DGK YVV FDFLGKDSIRYYNEVPV
Sbjct: 758 DKLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGKEYVVVFDFLGKDSIRYYNEVPV 817
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK DDLFDRLNT+V+NKHL+ELMEGLTAKVFRTYNAS TLQQQL+
Sbjct: 818 EKRVFKNLQLFMENKSPGDDLFDRLNTTVMNKHLNELMEGLTAKVFRTYNASWTLQQQLD 877
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L DP+ +EAEKIL+YNRANRAVA+LCNHQRSVPK+H KSM NLK KI K++ + + E
Sbjct: 878 KLTDPNDTEAEKILSYNRANRAVAILCNHQRSVPKTHAKSMENLKAKIDAKKEAIAECEL 937
Query: 424 ALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
+KDAK+ + K +KKK L RLKEQL KLEVQ TD+EENK IALGTSKLNYL
Sbjct: 938 QVKDAKRDAKHGSVKEKVTYEKKKKQLERLKEQLTKLEVQATDREENKEIALGTSKLNYL 997
Query: 479 DPRISVTW 486
DPRISV W
Sbjct: 998 DPRISVAW 1005
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 101/116 (87%), Positives = 110/116 (94%), Gaps = 2/116 (1%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ D
Sbjct: 682 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRED 739
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++D K
Sbjct: 740 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGK 795
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA D+VF
Sbjct: 1015 KIYNKTQRDKFRWAIDMAGPDYVF 1038
>gi|332030376|gb|EGI70083.1| DNA topoisomerase 1 [Acromyrmex echinatior]
Length = 1016
Score = 794 bits (2051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/488 (76%), Positives = 426/488 (87%), Gaps = 5/488 (1%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA ITDLSKC+F
Sbjct: 496 NGKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKITDLSKCNF 555
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
++MHAYF+QKSEERKAM+K+EK KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFR
Sbjct: 556 KEMHAYFLQKSEERKAMTKDEKLKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFR 615
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QG
Sbjct: 616 GRGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDPNVTWLASWTENIQG 675
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
QVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DW+SKEMRIRQRAVALYFI
Sbjct: 676 QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRDDWRSKEMRIRQRAVALYFI 735
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+K GK YVV FDFLGKDSIRYYNEVPV
Sbjct: 736 DRLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQKGGKEYVVVFDFLGKDSIRYYNEVPV 795
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK DDLFDRLNT+V+NKHL+ELMEGLTAKVFRTYNAS TLQQQL+
Sbjct: 796 EKRVFKNLQLFMENKSPGDDLFDRLNTTVMNKHLNELMEGLTAKVFRTYNASWTLQQQLD 855
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L DP+ +EAEKIL+YNRANRAVA+LCNHQRSVPK+H KSM NLK KI K+ + + E+
Sbjct: 856 KLTDPNETEAEKILSYNRANRAVAILCNHQRSVPKTHAKSMENLKAKIDTKKAVIAECEQ 915
Query: 424 ALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
+KDAK+ + K +KKK L R K+QL KLEVQ TD+EENK IAL TSKLNYL
Sbjct: 916 QVKDAKRDAKHGSVKEKVTYEKKKKQLERFKDQLTKLEVQATDREENKEIALSTSKLNYL 975
Query: 479 DPRISVTW 486
DPRISV W
Sbjct: 976 DPRISVAW 983
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/148 (70%), Positives = 122/148 (82%), Gaps = 1/148 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 623 MGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 682
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DW+SKEMRIRQRAVALYFID+LALRA
Sbjct: 683 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRDDWRSKEMRIRQRAVALYFIDRLALRA 742
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEK 591
GNEKDEDQADTVGCCSLRVEHI+LHE+K
Sbjct: 743 GNEKDEDQADTVGCCSLRVEHIKLHEQK 770
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA D+VF
Sbjct: 993 KIYNKTQRDKFRWAIDMAGPDYVF 1016
>gi|328786781|ref|XP_396203.4| PREDICTED: DNA topoisomerase 1 isoform 2 [Apis mellifera]
Length = 1026
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/488 (78%), Positives = 430/488 (88%), Gaps = 5/488 (1%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GKEMKLSQD EE+ATFYARM++H+YTTK AFN+NF DWR+ MTE ER I DLSKC+F
Sbjct: 506 NGKEMKLSQDTEEVATFYARMLDHDYTTKPAFNSNFFHDWREVMTESERTKIVDLSKCNF 565
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
+++HAYF+QKSEERKAM+KEEK+KIK++NE I KEYG C IDGHKEKIGNF+IEPPGLFR
Sbjct: 566 KEIHAYFIQKSEERKAMTKEEKQKIKEKNEEIQKEYGYCIIDGHKEKIGNFKIEPPGLFR 625
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRGEHPKMGKLK+RV EDI+INCSKDS +P PPPGHKWKE+RHD VTWLASWTEN+QG
Sbjct: 626 GRGEHPKMGKLKKRVMPEDILINCSKDSNIPKPPPGHKWKEIRHDPNVTWLASWTENIQG 685
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
QVKY+MLNPSSKLKGEKDWQKYE ARKLA+ I+KIR Y+ DWKSKEMRIRQRAVALYFI
Sbjct: 686 QVKYVMLNPSSKLKGEKDWQKYEIARKLAQLIDKIRAEYREDWKSKEMRIRQRAVALYFI 745
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KDGK YVV FDFLGKDSIRYYNEVPV
Sbjct: 746 DKLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDGKEYVVVFDFLGKDSIRYYNEVPV 805
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK SDDLFDRLNT+V+NKHL+ELMEGLTAKVFRTYNAS TLQQQL+
Sbjct: 806 EKRVFKNLQLFMENKSPSDDLFDRLNTTVMNKHLNELMEGLTAKVFRTYNASWTLQQQLD 865
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L +PD +EAEKIL+YNRANRAVA+LCNHQRSVPK+H KSM NLK KI K++ + DAE
Sbjct: 866 KLTNPDDTEAEKILSYNRANRAVAILCNHQRSVPKTHAKSMENLKAKIEAKKQAINDAEL 925
Query: 424 ALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
A+KDAK+ + K +KKK AL RLKEQL KLEVQ TDKEENK IALGTSKLNYL
Sbjct: 926 AVKDAKRDAKHGSVKEKVTYEKKKKALDRLKEQLTKLEVQATDKEENKEIALGTSKLNYL 985
Query: 479 DPRISVTW 486
DPRI+V W
Sbjct: 986 DPRITVAW 993
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 100/116 (86%), Positives = 107/116 (92%), Gaps = 2/116 (1%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYE ARKLA+ I+KIR Y+ D
Sbjct: 670 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYEIARKLAQLIDKIRAEYRED 727
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KD K
Sbjct: 728 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDGK 783
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA D+VF
Sbjct: 1003 KIYNKTQRDKFRWAIDMAGPDYVF 1026
>gi|328786783|ref|XP_003250839.1| PREDICTED: DNA topoisomerase 1 isoform 1 [Apis mellifera]
Length = 1022
Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/488 (78%), Positives = 430/488 (88%), Gaps = 5/488 (1%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GKEMKLSQD EE+ATFYARM++H+YTTK AFN+NF DWR+ MTE ER I DLSKC+F
Sbjct: 502 NGKEMKLSQDTEEVATFYARMLDHDYTTKPAFNSNFFHDWREVMTESERTKIVDLSKCNF 561
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
+++HAYF+QKSEERKAM+KEEK+KIK++NE I KEYG C IDGHKEKIGNF+IEPPGLFR
Sbjct: 562 KEIHAYFIQKSEERKAMTKEEKQKIKEKNEEIQKEYGYCIIDGHKEKIGNFKIEPPGLFR 621
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRGEHPKMGKLK+RV EDI+INCSKDS +P PPPGHKWKE+RHD VTWLASWTEN+QG
Sbjct: 622 GRGEHPKMGKLKKRVMPEDILINCSKDSNIPKPPPGHKWKEIRHDPNVTWLASWTENIQG 681
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
QVKY+MLNPSSKLKGEKDWQKYE ARKLA+ I+KIR Y+ DWKSKEMRIRQRAVALYFI
Sbjct: 682 QVKYVMLNPSSKLKGEKDWQKYEIARKLAQLIDKIRAEYREDWKSKEMRIRQRAVALYFI 741
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KDGK YVV FDFLGKDSIRYYNEVPV
Sbjct: 742 DKLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDGKEYVVVFDFLGKDSIRYYNEVPV 801
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK SDDLFDRLNT+V+NKHL+ELMEGLTAKVFRTYNAS TLQQQL+
Sbjct: 802 EKRVFKNLQLFMENKSPSDDLFDRLNTTVMNKHLNELMEGLTAKVFRTYNASWTLQQQLD 861
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L +PD +EAEKIL+YNRANRAVA+LCNHQRSVPK+H KSM NLK KI K++ + DAE
Sbjct: 862 KLTNPDDTEAEKILSYNRANRAVAILCNHQRSVPKTHAKSMENLKAKIEAKKQAINDAEL 921
Query: 424 ALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
A+KDAK+ + K +KKK AL RLKEQL KLEVQ TDKEENK IALGTSKLNYL
Sbjct: 922 AVKDAKRDAKHGSVKEKVTYEKKKKALDRLKEQLTKLEVQATDKEENKEIALGTSKLNYL 981
Query: 479 DPRISVTW 486
DPRI+V W
Sbjct: 982 DPRITVAW 989
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 100/116 (86%), Positives = 107/116 (92%), Gaps = 2/116 (1%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYE ARKLA+ I+KIR Y+ D
Sbjct: 666 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYEIARKLAQLIDKIRAEYRED 723
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KD K
Sbjct: 724 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDGK 779
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA D+VF
Sbjct: 999 KIYNKTQRDKFRWAIDMAGPDYVF 1022
>gi|156543660|ref|XP_001605104.1| PREDICTED: DNA topoisomerase 1-like [Nasonia vitripennis]
Length = 1019
Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/488 (77%), Positives = 428/488 (87%), Gaps = 5/488 (1%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GKEMKL+QD EE+ATFYARM+EH+YTTK+ FN NF DWR+ MTE ERA ITDL KC+F
Sbjct: 499 NGKEMKLTQDTEEVATFYARMLEHDYTTKQVFNDNFFHDWREVMTESERAKITDLKKCNF 558
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
+MH YF+ KSEERKAMSKEEKK IK++N+ I KEYG+CTIDGHKEKIGNF+IEPPGLFR
Sbjct: 559 TEMHKYFIMKSEERKAMSKEEKKAIKEKNDEIQKEYGICTIDGHKEKIGNFKIEPPGLFR 618
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRGEHPKMGKLK+R+ ED++INCSKDS P PPPGHKWKE+RHD VTWLASWTEN+QG
Sbjct: 619 GRGEHPKMGKLKKRLVPEDVLINCSKDSVHPKPPPGHKWKEIRHDPTVTWLASWTENIQG 678
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
QVKY+MLNPSSKLKGEKDWQKYETARKLAKS++KIR Y+ DWKSKEMRIRQRAVALYFI
Sbjct: 679 QVKYVMLNPSSKLKGEKDWQKYETARKLAKSVDKIRATYREDWKSKEMRIRQRAVALYFI 738
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KDGK YVV FDFLGKDSIRYYNEVPV
Sbjct: 739 DKLALRAGNEKDEDQADTVGCCSLRVEHIALHEKKDGKEYVVVFDFLGKDSIRYYNEVPV 798
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFK+LQLF+ENK D+LFDRLNT+V+NKHL+ELM+GLTAKVFRTYNAS TLQQQL
Sbjct: 799 EKRVFKSLQLFMENKSPGDELFDRLNTTVMNKHLNELMDGLTAKVFRTYNASWTLQQQLE 858
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL DP+ + AEKIL+YNRANRAVA+LCNHQRSVPKSH+KSM NLK KI KR+ + +AE+
Sbjct: 859 ELTDPNSTVAEKILSYNRANRAVAILCNHQRSVPKSHEKSMENLKAKIDAKREAIAEAEQ 918
Query: 424 ALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
+KDAK+ + K + +KKK L RLKEQL+KLEVQ TD+EENK IALGTSKLNYL
Sbjct: 919 IVKDAKRDAKHGSVKEKVLYEKKKKQLDRLKEQLMKLEVQATDREENKEIALGTSKLNYL 978
Query: 479 DPRISVTW 486
DPRISV W
Sbjct: 979 DPRISVAW 986
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 102/116 (87%), Positives = 109/116 (93%), Gaps = 2/116 (1%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLAKS++KIR Y+ D
Sbjct: 663 DP--TVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAKSVDKIRATYRED 720
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KD K
Sbjct: 721 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIALHEKKDGK 776
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA D+VF
Sbjct: 996 KIYNKTQRDKFRWAIDMAGPDYVF 1019
>gi|270006557|gb|EFA03005.1| hypothetical protein TcasGA2_TC010428 [Tribolium castaneum]
Length = 943
Score = 791 bits (2042), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/487 (76%), Positives = 426/487 (87%), Gaps = 5/487 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKL+ +AEE+A+FY++M++H+YTTKE FN NF KDWRK M+E ER VI DL KC+F+
Sbjct: 424 GKEMKLTPEAEEVASFYSKMLDHDYTTKEVFNNNFFKDWRKVMSESERKVIKDLKKCNFK 483
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
MHAY++ +E+ + +KEEK+ +K++NEA+ KEYG C IDGHKEKIGNF+IEPPGLFRG
Sbjct: 484 SMHAYYMDLAEKNRNRTKEEKQALKEKNEALIKEYGFCNIDGHKEKIGNFKIEPPGLFRG 543
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG LKRRV+AEDIIINCS+DSK+P PPPGHKWKEVRHD+ VTWLASWTENVQ Q
Sbjct: 544 RGEHPKMGMLKRRVEAEDIIINCSQDSKIPEPPPGHKWKEVRHDDNVTWLASWTENVQNQ 603
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKDWQKYETAR+L K I+KIRE Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 604 VKYIMLNPSSKLKGEKDWQKYETARRLHKCIDKIREEYKDDWKSKEMRIRQRAVALYFID 663
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEHI LH+EKDGK YVV FDFLGKDSIRYYNEVPVE
Sbjct: 664 KLALRAGNEKDEDQADTVGCCSLRVEHISLHKEKDGKEYVVVFDFLGKDSIRYYNEVPVE 723
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNLQLF+E+K DDLFDRLNT+++NKHL+ELMEGLTAKVFRTYNAS TLQQQL++
Sbjct: 724 KRVFKNLQLFMEHKSPGDDLFDRLNTAIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDK 783
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L + D S AEKILAYNRANRAVA+LCNHQRSVPK H+KSM LKEKI K++ +KDAER
Sbjct: 784 LTNADDSVAEKILAYNRANRAVAILCNHQRSVPKGHEKSMEKLKEKIDAKKEAIKDAERQ 843
Query: 425 LKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
+KDA K + K + DKKK L RLKEQL KLE+QETD++ENKTIALGTSKLNYLD
Sbjct: 844 VKDAAKDAKHGSVKEKTVYDKKKKMLQRLKEQLTKLEIQETDRDENKTIALGTSKLNYLD 903
Query: 480 PRISVTW 486
PRISV W
Sbjct: 904 PRISVAW 910
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 100/112 (89%), Positives = 105/112 (93%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTENVQ QVKYIMLNPSSKLKGEKDWQKYETAR+L K I+KIRE Y+ DWKSK
Sbjct: 589 NVTWLASWTENVQNQVKYIMLNPSSKLKGEKDWQKYETARRLHKCIDKIREEYKDDWKSK 648
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LH+EKD K
Sbjct: 649 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHISLHKEKDGK 700
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA D+VF
Sbjct: 920 KIYNKTQRDKFRWAIDMAGPDYVF 943
>gi|242016037|ref|XP_002428645.1| DNA topoisomerase, putative [Pediculus humanus corporis]
gi|212513308|gb|EEB15907.1| DNA topoisomerase, putative [Pediculus humanus corporis]
Length = 961
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/487 (78%), Positives = 426/487 (87%), Gaps = 1/487 (0%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKE+ LS++AEE+ATFYA+M+ H+YTTKE FNTNF DWRK MT+KER VITDLSKC+F+
Sbjct: 448 GKEISLSEEAEEVATFYAKMLTHDYTTKEKFNTNFFNDWRKVMTDKERKVITDLSKCNFK 507
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF +KSEERKAMSKEEKK IKD+N+AI KEYG CTIDGHKEKIGNFRIEPPGLFRG
Sbjct: 508 PMALYFQEKSEERKAMSKEEKKVIKDQNDAIQKEYGFCTIDGHKEKIGNFRIEPPGLFRG 567
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG LK+RV ED+IINCSKDSK+P PP GHKWK+V+HD VTWLASWTENVQG
Sbjct: 568 RGEHPKMGMLKKRVLPEDVIINCSKDSKIPKPPDGHKWKKVQHDPSVTWLASWTENVQGN 627
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKD KYETARKLAK I+KIRE YQADWKSKEM+IRQRAVALYFID
Sbjct: 628 VKYVMLNPSSKLKGEKDMVKYETARKLAKKIDKIREQYQADWKSKEMKIRQRAVALYFID 687
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH++L+ E +GK VV FDFLGKDSIRYYNEVPVE
Sbjct: 688 KLALRAGNEKDEDQADTVGCCSLRVEHVELYPELNGKENVVVFDFLGKDSIRYYNEVPVE 747
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL LF ENK+ DDLFDRLNT+VLNKHL+ELMEGLTAKVFRTYNAS TLQ+QL E
Sbjct: 748 KRVFKNLLLFKENKQPQDDLFDRLNTTVLNKHLNELMEGLTAKVFRTYNASWTLQEQLKE 807
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L +PD + AEK+LAYNRANRAVA+LCNHQRSVPKSH+KSM NLK KI KR+Q+ + ++
Sbjct: 808 LTNPDDTVAEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKAKIEAKREQINEIKKE 867
Query: 425 LKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
+K+AK+ G+S KKK L RLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV
Sbjct: 868 VKNAKRNGDS-GTEAKKKKQLDRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 926
Query: 485 TWLASWT 491
W +
Sbjct: 927 AWCKKYN 933
Score = 205 bits (522), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 98/112 (87%), Positives = 104/112 (92%), Gaps = 2/112 (1%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP SVTWLASWTENVQG VKY+MLNPSSKLKGEKD KYETARKLAK I+KIRE YQAD
Sbjct: 611 DP--SVTWLASWTENVQGNVKYVMLNPSSKLKGEKDMVKYETARKLAKKIDKIREQYQAD 668
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
WKSKEM+IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH++L+ E
Sbjct: 669 WKSKEMKIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVELYPE 720
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA D+VF
Sbjct: 938 KIYNKTQRDKFRWAIDMAGPDYVF 961
>gi|189237298|ref|XP_971195.2| PREDICTED: similar to conserved hypothetical protein [Tribolium
castaneum]
Length = 936
Score = 790 bits (2040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/487 (76%), Positives = 426/487 (87%), Gaps = 5/487 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKL+ +AEE+A+FY++M++H+YTTKE FN NF KDWRK M+E ER VI DL KC+F+
Sbjct: 417 GKEMKLTPEAEEVASFYSKMLDHDYTTKEVFNNNFFKDWRKVMSESERKVIKDLKKCNFK 476
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
MHAY++ +E+ + +KEEK+ +K++NEA+ KEYG C IDGHKEKIGNF+IEPPGLFRG
Sbjct: 477 SMHAYYMDLAEKNRNRTKEEKQALKEKNEALIKEYGFCNIDGHKEKIGNFKIEPPGLFRG 536
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG LKRRV+AEDIIINCS+DSK+P PPPGHKWKEVRHD+ VTWLASWTENVQ Q
Sbjct: 537 RGEHPKMGMLKRRVEAEDIIINCSQDSKIPEPPPGHKWKEVRHDDNVTWLASWTENVQNQ 596
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKDWQKYETAR+L K I+KIRE Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 597 VKYIMLNPSSKLKGEKDWQKYETARRLHKCIDKIREEYKDDWKSKEMRIRQRAVALYFID 656
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEHI LH+EKDGK YVV FDFLGKDSIRYYNEVPVE
Sbjct: 657 KLALRAGNEKDEDQADTVGCCSLRVEHISLHKEKDGKEYVVVFDFLGKDSIRYYNEVPVE 716
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNLQLF+E+K DDLFDRLNT+++NKHL+ELMEGLTAKVFRTYNAS TLQQQL++
Sbjct: 717 KRVFKNLQLFMEHKSPGDDLFDRLNTAIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDK 776
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L + D S AEKILAYNRANRAVA+LCNHQRSVPK H+KSM LKEKI K++ +KDAER
Sbjct: 777 LTNADDSVAEKILAYNRANRAVAILCNHQRSVPKGHEKSMEKLKEKIDAKKEAIKDAERQ 836
Query: 425 LKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
+KDA K + K + DKKK L RLKEQL KLE+QETD++ENKTIALGTSKLNYLD
Sbjct: 837 VKDAAKDAKHGSVKEKTVYDKKKKMLQRLKEQLTKLEIQETDRDENKTIALGTSKLNYLD 896
Query: 480 PRISVTW 486
PRISV W
Sbjct: 897 PRISVAW 903
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 100/112 (89%), Positives = 105/112 (93%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTENVQ QVKYIMLNPSSKLKGEKDWQKYETAR+L K I+KIRE Y+ DWKSK
Sbjct: 582 NVTWLASWTENVQNQVKYIMLNPSSKLKGEKDWQKYETARRLHKCIDKIREEYKDDWKSK 641
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LH+EKD K
Sbjct: 642 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHISLHKEKDGK 693
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA D+VF
Sbjct: 913 KIYNKTQRDKFRWAIDMAGPDYVF 936
>gi|307205971|gb|EFN84097.1| DNA topoisomerase 1 [Harpegnathos saltator]
Length = 1033
Score = 785 bits (2027), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/488 (78%), Positives = 429/488 (87%), Gaps = 5/488 (1%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GKEMKLSQD EE+ATFYARM++H+YTTK AFN+NF DWR MTE ERA ITDLSKC+F
Sbjct: 513 NGKEMKLSQDTEEVATFYARMLDHDYTTKPAFNSNFFGDWRDVMTESERAKITDLSKCNF 572
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
++MH YF+QKSEERKAM+KEEK+KIK++NE KEYG C IDGHKEKIGNF+IEPPGLFR
Sbjct: 573 KEMHTYFLQKSEERKAMTKEEKQKIKEKNEETQKEYGFCVIDGHKEKIGNFKIEPPGLFR 632
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRGEHPKMGKLK+RV ED++INCSK+S +P PP GHKWKEVRHD VTWLASWTEN+QG
Sbjct: 633 GRGEHPKMGKLKKRVLPEDVLINCSKNSNIPKPPAGHKWKEVRHDPNVTWLASWTENIQG 692
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
QVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFI
Sbjct: 693 QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFI 752
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDGK Y+V FDFLGKDSIRYYNEVPV
Sbjct: 753 DKLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQKDGKDYIVVFDFLGKDSIRYYNEVPV 812
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK DDLFDRLNT+V+NKHL+ELMEGLTAKVFRTYNAS TLQQQL+
Sbjct: 813 EKRVFKNLQLFMENKSPGDDLFDRLNTTVMNKHLNELMEGLTAKVFRTYNASWTLQQQLD 872
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L DP+ +EAEKIL+YNRANRAVA+LCNHQRSVPK+H KSM NLK KI K++ + +AE
Sbjct: 873 KLTDPNDTEAEKILSYNRANRAVAILCNHQRSVPKTHAKSMENLKAKIEAKKETISEAEL 932
Query: 424 ALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
+KDAK+ + K + +KKK L RLKEQL KLEVQ TD+EENK IALGTSKLNYL
Sbjct: 933 QVKDAKRDAKHGSVKEKIVYEKKKKQLERLKEQLTKLEVQATDREENKEIALGTSKLNYL 992
Query: 479 DPRISVTW 486
DPRISV W
Sbjct: 993 DPRISVAW 1000
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 102/116 (87%), Positives = 110/116 (94%), Gaps = 2/116 (1%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ D
Sbjct: 677 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRED 734
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K
Sbjct: 735 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQKDGK 790
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA D+VF
Sbjct: 1010 KIYNKTQRDKFRWAIDMAGPDYVF 1033
>gi|383847196|ref|XP_003699241.1| PREDICTED: DNA topoisomerase 1-like [Megachile rotundata]
Length = 1033
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/488 (78%), Positives = 431/488 (88%), Gaps = 5/488 (1%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GKEMKLS++AEE+ATFYARM++H+YTTK FN NF DWR+ MTE ERA I DLSKC+F
Sbjct: 513 NGKEMKLSEEAEEVATFYARMLDHDYTTKPVFNANFFHDWREVMTESERAKIEDLSKCNF 572
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
++MHAYF+QKSEERK M+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFR
Sbjct: 573 KEMHAYFLQKSEERKQMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFR 632
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRGEHPKMGKLK+RV EDI+INCSKDS +P PPPGHKWKE+RHD VTWLASWTEN+QG
Sbjct: 633 GRGEHPKMGKLKKRVMPEDILINCSKDSNIPKPPPGHKWKEIRHDPNVTWLASWTENIQG 692
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
QVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFI
Sbjct: 693 QVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFI 752
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KDGK YVV FDFLGKDSIRYYNEVPV
Sbjct: 753 DKLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDGKEYVVVFDFLGKDSIRYYNEVPV 812
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK +DDLFDRLNT+V+NKHL+ELMEGLTAKVFRTYNAS TLQQQL+
Sbjct: 813 EKRVFKNLQLFMENKSPNDDLFDRLNTTVMNKHLNELMEGLTAKVFRTYNASWTLQQQLD 872
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L +PD + AEKIL+YNRANRAVA+LCNHQRSVPK+H KSM NLK KI K++ + DAE
Sbjct: 873 KLTNPDDTVAEKILSYNRANRAVAILCNHQRSVPKTHAKSMENLKTKIDAKKQAIADAEL 932
Query: 424 ALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
A+KDAK+ + ++ +K KK L +LKEQL KLEVQ TDKEENK IALGTSKLNYL
Sbjct: 933 AVKDAKRNAKHGSVKEKDIYEKKKKQLDKLKEQLTKLEVQATDKEENKEIALGTSKLNYL 992
Query: 479 DPRISVTW 486
DPRISV W
Sbjct: 993 DPRISVAW 1000
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 102/116 (87%), Positives = 109/116 (93%), Gaps = 2/116 (1%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ D
Sbjct: 677 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRED 734
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KD K
Sbjct: 735 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDGK 790
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA AD+VF
Sbjct: 1010 KIYNKTQRDKFRWAIDMAGADYVF 1033
>gi|328723887|ref|XP_003247970.1| PREDICTED: DNA topoisomerase 1-like isoform 4 [Acyrthosiphon pisum]
Length = 734
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/488 (78%), Positives = 432/488 (88%), Gaps = 5/488 (1%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GK++ LS+ AEE+ATFYA+M+EH+YTTKE FN NF+KDWRK+MT KE+ +ITDLS C+F
Sbjct: 214 NGKQVVLSELAEEVATFYAKMLEHDYTTKEVFNKNFLKDWRKTMTPKEKELITDLSLCNF 273
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
++M+ YF +KSEERKAMSKEEKKKIK+ENEA+ KEYG CTIDGHKEKIGNF+IEPPGLFR
Sbjct: 274 KEMNVYFTKKSEERKAMSKEEKKKIKEENEALQKEYGFCTIDGHKEKIGNFKIEPPGLFR 333
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRGEHPKMG LK+RV ED++INCSKDS +P PPPGHKWKEVRHD VTWLASW ENVQG
Sbjct: 334 GRGEHPKMGMLKKRVVPEDVLINCSKDSNIPKPPPGHKWKEVRHDFGVTWLASWIENVQG 393
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
QVKY+MLNPSSKLKGEKDWQKYETAR+LAKSI+KIRENY DWKS+EM +RQR+VALYFI
Sbjct: 394 QVKYVMLNPSSKLKGEKDWQKYETARRLAKSIDKIRENYINDWKSREMHVRQRSVALYFI 453
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE + K YVV FDFLGKDSIRYYNEVPV
Sbjct: 454 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEFNDKEYVVVFDFLGKDSIRYYNEVPV 513
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNL++F+ENKKGSDDLFDRLNTS+LN+HL ELM+GLTAKVFRT+NAS TLQQQL
Sbjct: 514 EKRVFKNLKIFMENKKGSDDLFDRLNTSILNQHLHELMDGLTAKVFRTFNASWTLQQQLE 573
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L DPD S AEKIL YNRANRAVA+LCNHQR++PK+H+KSMGNLKEKI KR VK+A+
Sbjct: 574 KLTDPDVSVAEKILQYNRANRAVAILCNHQRAIPKTHEKSMGNLKEKIQTKRAAVKEAKE 633
Query: 424 ALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
K AK+ + SK +K+K AL RLKEQL KLEVQETDKEENKTIALGTSKLNYL
Sbjct: 634 QYKQAKRDVKDGSVHSKTQLEKRKKALERLKEQLTKLEVQETDKEENKTIALGTSKLNYL 693
Query: 479 DPRISVTW 486
DPRISV W
Sbjct: 694 DPRISVAW 701
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 98/113 (86%), Positives = 106/113 (93%)
Query: 482 ISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
VTWLASW ENVQGQVKY+MLNPSSKLKGEKDWQKYETAR+LAKSI+KIRENY DWKS
Sbjct: 379 FGVTWLASWIENVQGQVKYVMLNPSSKLKGEKDWQKYETARRLAKSIDKIRENYINDWKS 438
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
+EM +RQR+VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE ++K
Sbjct: 439 REMHVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEFNDK 491
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA ++VF
Sbjct: 711 KIYNKTQRDKFRWAIDMAGPEYVF 734
>gi|328723881|ref|XP_001943026.2| PREDICTED: DNA topoisomerase 1-like isoform 1 [Acyrthosiphon pisum]
gi|328723885|ref|XP_003247969.1| PREDICTED: DNA topoisomerase 1-like isoform 3 [Acyrthosiphon pisum]
Length = 747
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/488 (78%), Positives = 432/488 (88%), Gaps = 5/488 (1%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GK++ LS+ AEE+ATFYA+M+EH+YTTKE FN NF+KDWRK+MT KE+ +ITDLS C+F
Sbjct: 227 NGKQVVLSELAEEVATFYAKMLEHDYTTKEVFNKNFLKDWRKTMTPKEKELITDLSLCNF 286
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
++M+ YF +KSEERKAMSKEEKKKIK+ENEA+ KEYG CTIDGHKEKIGNF+IEPPGLFR
Sbjct: 287 KEMNVYFTKKSEERKAMSKEEKKKIKEENEALQKEYGFCTIDGHKEKIGNFKIEPPGLFR 346
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRGEHPKMG LK+RV ED++INCSKDS +P PPPGHKWKEVRHD VTWLASW ENVQG
Sbjct: 347 GRGEHPKMGMLKKRVVPEDVLINCSKDSNIPKPPPGHKWKEVRHDFGVTWLASWIENVQG 406
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
QVKY+MLNPSSKLKGEKDWQKYETAR+LAKSI+KIRENY DWKS+EM +RQR+VALYFI
Sbjct: 407 QVKYVMLNPSSKLKGEKDWQKYETARRLAKSIDKIRENYINDWKSREMHVRQRSVALYFI 466
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE + K YVV FDFLGKDSIRYYNEVPV
Sbjct: 467 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEFNDKEYVVVFDFLGKDSIRYYNEVPV 526
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNL++F+ENKKGSDDLFDRLNTS+LN+HL ELM+GLTAKVFRT+NAS TLQQQL
Sbjct: 527 EKRVFKNLKIFMENKKGSDDLFDRLNTSILNQHLHELMDGLTAKVFRTFNASWTLQQQLE 586
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L DPD S AEKIL YNRANRAVA+LCNHQR++PK+H+KSMGNLKEKI KR VK+A+
Sbjct: 587 KLTDPDVSVAEKILQYNRANRAVAILCNHQRAIPKTHEKSMGNLKEKIQTKRAAVKEAKE 646
Query: 424 ALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
K AK+ + SK +K+K AL RLKEQL KLEVQETDKEENKTIALGTSKLNYL
Sbjct: 647 QYKQAKRDVKDGSVHSKTQLEKRKKALERLKEQLTKLEVQETDKEENKTIALGTSKLNYL 706
Query: 479 DPRISVTW 486
DPRISV W
Sbjct: 707 DPRISVAW 714
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 98/113 (86%), Positives = 106/113 (93%)
Query: 482 ISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
VTWLASW ENVQGQVKY+MLNPSSKLKGEKDWQKYETAR+LAKSI+KIRENY DWKS
Sbjct: 392 FGVTWLASWIENVQGQVKYVMLNPSSKLKGEKDWQKYETARRLAKSIDKIRENYINDWKS 451
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
+EM +RQR+VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE ++K
Sbjct: 452 REMHVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEFNDK 504
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA ++VF
Sbjct: 724 KIYNKTQRDKFRWAIDMAGPEYVF 747
>gi|328723883|ref|XP_003247968.1| PREDICTED: DNA topoisomerase 1-like isoform 2 [Acyrthosiphon pisum]
Length = 677
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/488 (78%), Positives = 432/488 (88%), Gaps = 5/488 (1%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GK++ LS+ AEE+ATFYA+M+EH+YTTKE FN NF+KDWRK+MT KE+ +ITDLS C+F
Sbjct: 157 NGKQVVLSELAEEVATFYAKMLEHDYTTKEVFNKNFLKDWRKTMTPKEKELITDLSLCNF 216
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
++M+ YF +KSEERKAMSKEEKKKIK+ENEA+ KEYG CTIDGHKEKIGNF+IEPPGLFR
Sbjct: 217 KEMNVYFTKKSEERKAMSKEEKKKIKEENEALQKEYGFCTIDGHKEKIGNFKIEPPGLFR 276
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRGEHPKMG LK+RV ED++INCSKDS +P PPPGHKWKEVRHD VTWLASW ENVQG
Sbjct: 277 GRGEHPKMGMLKKRVVPEDVLINCSKDSNIPKPPPGHKWKEVRHDFGVTWLASWIENVQG 336
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
QVKY+MLNPSSKLKGEKDWQKYETAR+LAKSI+KIRENY DWKS+EM +RQR+VALYFI
Sbjct: 337 QVKYVMLNPSSKLKGEKDWQKYETARRLAKSIDKIRENYINDWKSREMHVRQRSVALYFI 396
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE + K YVV FDFLGKDSIRYYNEVPV
Sbjct: 397 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEFNDKEYVVVFDFLGKDSIRYYNEVPV 456
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNL++F+ENKKGSDDLFDRLNTS+LN+HL ELM+GLTAKVFRT+NAS TLQQQL
Sbjct: 457 EKRVFKNLKIFMENKKGSDDLFDRLNTSILNQHLHELMDGLTAKVFRTFNASWTLQQQLE 516
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L DPD S AEKIL YNRANRAVA+LCNHQR++PK+H+KSMGNLKEKI KR VK+A+
Sbjct: 517 KLTDPDVSVAEKILQYNRANRAVAILCNHQRAIPKTHEKSMGNLKEKIQTKRAAVKEAKE 576
Query: 424 ALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
K AK+ + SK +K+K AL RLKEQL KLEVQETDKEENKTIALGTSKLNYL
Sbjct: 577 QYKQAKRDVKDGSVHSKTQLEKRKKALERLKEQLTKLEVQETDKEENKTIALGTSKLNYL 636
Query: 479 DPRISVTW 486
DPRISV W
Sbjct: 637 DPRISVAW 644
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 98/113 (86%), Positives = 106/113 (93%)
Query: 482 ISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
VTWLASW ENVQGQVKY+MLNPSSKLKGEKDWQKYETAR+LAKSI+KIRENY DWKS
Sbjct: 322 FGVTWLASWIENVQGQVKYVMLNPSSKLKGEKDWQKYETARRLAKSIDKIRENYINDWKS 381
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
+EM +RQR+VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE ++K
Sbjct: 382 REMHVRQRSVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEFNDK 434
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA ++VF
Sbjct: 654 KIYNKTQRDKFRWAIDMAGPEYVF 677
>gi|343175107|gb|AEM00018.1| topoisomerase 1B [Spodoptera exigua]
Length = 930
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/487 (76%), Positives = 414/487 (85%), Gaps = 5/487 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEM+LSQDAEE+A FYARM++HEYTTK FN NF DWRK MT +E +I DLSKC+F+
Sbjct: 411 GKEMRLSQDAEEVAGFYARMLDHEYTTKSTFNNNFFNDWRKVMTHEETKIIKDLSKCNFK 470
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF SE+ + +KEEK +K +NE I KEYG C IDGHKEKIGNFRIEPPGLFRG
Sbjct: 471 EMHAYFQSVSEKNRNRTKEEKAALKAKNEEIQKEYGFCIIDGHKEKIGNFRIEPPGLFRG 530
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG LKRRV ED++INCSKDSK+P PPPGHKWKEV+HDN VTWLASWTENVQGQ
Sbjct: 531 RGEHPKMGMLKRRVMPEDVLINCSKDSKIPKPPPGHKWKEVKHDNTVTWLASWTENVQGQ 590
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+MLNPSSKLKGEKDWQKYETARKL K I+ IRENY+ DWK+KEMR+RQRAVALYFID
Sbjct: 591 AKYVMLNPSSKLKGEKDWQKYETARKLHKCIDVIRENYKNDWKAKEMRVRQRAVALYFID 650
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD+DQADTVGCCSLRVEHI LH+EKDGK YVV FDFLGKDSIRYYNEVPVE
Sbjct: 651 KLALRAGNEKDDDQADTVGCCSLRVEHIALHKEKDGKEYVVVFDFLGKDSIRYYNEVPVE 710
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+ENKK SDDLFDRLNT LN+HL +LM GLTAKVFRTYNASITLQ+QL+E
Sbjct: 711 KRVFKNLELFMENKKDSDDLFDRLNTQTLNEHLKDLMPGLTAKVFRTYNASITLQRQLDE 770
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L D S EKILAYNRANRAVAVLCNHQR+VPK H KSM LKEKI KR QV +AE
Sbjct: 771 LTDASASIPEKILAYNRANRAVAVLCNHQRAVPKGHSKSMEALKEKIQAKRDQVDEAEED 830
Query: 425 LKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
L++A KA + K DKKK AL RL+EQL KLE+QETD++ENKTIALGTSKLNYLD
Sbjct: 831 LREAAKAAKRGSVKEKLACDKKKKALERLREQLKKLELQETDRDENKTIALGTSKLNYLD 890
Query: 480 PRISVTW 486
PRISV W
Sbjct: 891 PRISVAW 897
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/112 (86%), Positives = 105/112 (93%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTENVQGQ KY+MLNPSSKLKGEKDWQKYETARKL K I+ IRENY+ DWK+K
Sbjct: 576 TVTWLASWTENVQGQAKYVMLNPSSKLKGEKDWQKYETARKLHKCIDVIRENYKNDWKAK 635
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMR+RQRAVALYFIDKLALRAGNEKD+DQADTVGCCSLRVEHI LH+EKD K
Sbjct: 636 EMRVRQRAVALYFIDKLALRAGNEKDDDQADTVGCCSLRVEHIALHKEKDGK 687
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA +++F
Sbjct: 907 KIYNKTQRDKFRWAIDMAGPEYIF 930
>gi|322800615|gb|EFZ21584.1| hypothetical protein SINV_04104 [Solenopsis invicta]
Length = 1025
Score = 775 bits (2000), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/488 (78%), Positives = 427/488 (87%), Gaps = 5/488 (1%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA ITDL KC+F
Sbjct: 505 NGKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAKITDLFKCNF 564
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
++M AYFVQKSEERKAM+KEEKKKIK++NE I KEYG C IDGHKEKIGNF+IEPPGLFR
Sbjct: 565 KEMQAYFVQKSEERKAMTKEEKKKIKEKNEEIQKEYGFCIIDGHKEKIGNFKIEPPGLFR 624
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRGEHPKMGKLK+RV ED++INCS+DS +P PPPGHKWKEVRHD+ VTWLASWTEN+QG
Sbjct: 625 GRGEHPKMGKLKKRVLPEDVLINCSRDSNIPKPPPGHKWKEVRHDSTVTWLASWTENIQG 684
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
QVKYIMLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFI
Sbjct: 685 QVKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFI 744
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALRAGNEKDEDQADTVGCCSLRVEHI+L E+KDGK YVV FDFLGKDSIRYYNEVPV
Sbjct: 745 DKLALRAGNEKDEDQADTVGCCSLRVEHIKLCEQKDGKEYVVVFDFLGKDSIRYYNEVPV 804
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK DDLFDRLNT+V+NKHL+ELMEGLTAKVFRTYNAS TLQQQL+
Sbjct: 805 EKRVFKNLQLFMENKSPGDDLFDRLNTTVMNKHLNELMEGLTAKVFRTYNASWTLQQQLD 864
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L DP+ +EAEKIL+YNRANRAVA+LCNHQRSVPK+H KSM NLK KI K++ + + E
Sbjct: 865 KLTDPNDTEAEKILSYNRANRAVAILCNHQRSVPKTHAKSMENLKAKIEAKKEAITECEL 924
Query: 424 ALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
+KDAK+ + K DKKK L RLK+QL KLEVQ TD+EENK IAL TSKLNYL
Sbjct: 925 QVKDAKRDAKHGSVKEKVAYDKKKKQLERLKDQLTKLEVQATDREENKEIALSTSKLNYL 984
Query: 479 DPRISVTW 486
DPRISV W
Sbjct: 985 DPRISVAW 992
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 100/112 (89%), Positives = 107/112 (95%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKYIMLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 671 TVTWLASWTENIQGQVKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 730
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+L E+KD K
Sbjct: 731 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIKLCEQKDGK 782
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA D+VF
Sbjct: 1002 KIYNKTQRDKFRWAIDMAGPDYVF 1025
>gi|157167753|ref|XP_001655613.1| DNA topoisomerase type I [Aedes aegypti]
gi|108882028|gb|EAT46253.1| AAEL002551-PA [Aedes aegypti]
Length = 966
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/487 (75%), Positives = 411/487 (84%), Gaps = 1/487 (0%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
E GK +KLSQDAEEIA FYARM+EHEYT+K+AFN NF KDWRKSMT ER I DL K
Sbjct: 447 FEYDGKVIKLSQDAEEIAGFYARMLEHEYTSKDAFNDNFFKDWRKSMTSSEREKIKDLKK 506
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
C+FR MH +F + SE + +KE+K +K++NEA+ KEYG C+IDGHKEKIGNFRIEPPG
Sbjct: 507 CNFRSMHKHFAEISEANRNRTKEQKLALKEQNEALMKEYGTCSIDGHKEKIGNFRIEPPG 566
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRGEHPKMG +KRRV ED+IINC K+S P P GH+WKEVRHDN V+WLASWTEN
Sbjct: 567 LFRGRGEHPKMGMVKRRVMPEDVIINCGKESVWPKAPEGHRWKEVRHDNSVSWLASWTEN 626
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
VQGQVKY+MLNPSSKLKGEKDWQKYETAR+L K I+KIR+ Y+ +WKSKEMRIRQRAVAL
Sbjct: 627 VQGQVKYVMLNPSSKLKGEKDWQKYETARRLLKHIDKIRDTYRDEWKSKEMRIRQRAVAL 686
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
YFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LH+E +GK VV FDFLGKDSIRYYNE
Sbjct: 687 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIDLHKELNGKENVVVFDFLGKDSIRYYNE 746
Query: 301 VPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
V VEKRVFKNL+LF ENKK DDLFDRLNTSVLN+HL ELMEGLTAKVFRT+NAS TLQ
Sbjct: 747 VEVEKRVFKNLELFKENKKPGDDLFDRLNTSVLNEHLRELMEGLTAKVFRTFNASFTLQN 806
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKD 420
QL EL DPD + EK+LAYNRANRAVA+LCNHQR+VPK+H+KSM NLKEKI K++ V+
Sbjct: 807 QLRELTDPDMTVPEKLLAYNRANRAVAILCNHQRAVPKTHEKSMSNLKEKIRAKQEAVET 866
Query: 421 AERALKDAKKAG-ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
ER LKD KK+ K DKK+ L RL+EQL KLE+QETDK+ENKTIALGTSKLNYLD
Sbjct: 867 CERELKDLKKSNVRDKVAKDKKQKQLERLREQLNKLELQETDKDENKTIALGTSKLNYLD 926
Query: 480 PRISVTW 486
PRISV W
Sbjct: 927 PRISVAW 933
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/108 (87%), Positives = 103/108 (95%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SV+WLASWTENVQGQVKY+MLNPSSKLKGEKDWQKYETAR+L K I+KIR+ Y+ +WKSK
Sbjct: 616 SVSWLASWTENVQGQVKYVMLNPSSKLKGEKDWQKYETARRLLKHIDKIRDTYRDEWKSK 675
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LH+E
Sbjct: 676 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIDLHKE 723
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KI+NKTQR KFRWAIDMA +++F
Sbjct: 943 KIFNKTQRDKFRWAIDMADENYIF 966
>gi|170035478|ref|XP_001845596.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167877508|gb|EDS40891.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 962
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/488 (74%), Positives = 412/488 (84%), Gaps = 2/488 (0%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
E GK MKLSQD EE+A FYARMIEHEYT+K+ FN NF KDWRK+MT ER I DL K
Sbjct: 442 FEYDGKVMKLSQDTEEVAGFYARMIEHEYTSKDVFNDNFFKDWRKTMTSSEREKIKDLKK 501
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
C+F+ MHAYF SE+ + SKEEK +K++NEA+ KEYG+C IDGHKEKIGNFRIEPPG
Sbjct: 502 CNFKYMHAYFTDLSEKNRNRSKEEKLALKEQNEALVKEYGICNIDGHKEKIGNFRIEPPG 561
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRGEHPKMG +KRRV ED+IINC+KDS P P GH+WKEVRHDN V+WLASWTEN
Sbjct: 562 LFRGRGEHPKMGLVKRRVMPEDVIINCAKDSVYPKAPEGHRWKEVRHDNTVSWLASWTEN 621
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
VQGQVKY+MLNPSSKLKGEKDWQKYETAR+L K I+KIR+ Y+ +WKSKEMRIRQRAVAL
Sbjct: 622 VQGQVKYVMLNPSSKLKGEKDWQKYETARRLLKHIDKIRDTYRDEWKSKEMRIRQRAVAL 681
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
YFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+LH+E +GK VV FDFLGKDSIRYYNE
Sbjct: 682 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIELHKELNGKENVVVFDFLGKDSIRYYNE 741
Query: 301 VPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
V VEKRVFKNL+LF ENKK DDLFDRLNTSVLN+HL +LM+GLTAKVFRT+NAS TLQ
Sbjct: 742 VEVEKRVFKNLELFKENKKPGDDLFDRLNTSVLNEHLRDLMDGLTAKVFRTFNASFTLQN 801
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKD 420
QL EL DP+ + EK+LAYNRANRAVA+LCNHQR+VPK+HDKSM NLKEKI K++ V+
Sbjct: 802 QLAELTDPNMTVPEKMLAYNRANRAVAILCNHQRAVPKTHDKSMSNLKEKIRLKKEAVET 861
Query: 421 AERALKDAKKAGESKAMT--DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
+R LKD K+ G K DKK+ L RLK+QL KLE+QETD++ENKTIALGTSKLNYL
Sbjct: 862 CQRELKDMKRGGSVKGSVDRDKKQKQLERLKDQLKKLELQETDRDENKTIALGTSKLNYL 921
Query: 479 DPRISVTW 486
DPRISV W
Sbjct: 922 DPRISVAW 929
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 94/108 (87%), Positives = 104/108 (96%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V+WLASWTENVQGQVKY+MLNPSSKLKGEKDWQKYETAR+L K I+KIR+ Y+ +WKSK
Sbjct: 611 TVSWLASWTENVQGQVKYVMLNPSSKLKGEKDWQKYETARRLLKHIDKIRDTYRDEWKSK 670
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+LH+E
Sbjct: 671 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIELHKE 718
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KI+NKTQR KFRWAIDMA +VF
Sbjct: 939 KIFNKTQRDKFRWAIDMADETYVF 962
>gi|347971189|ref|XP_309629.5| AGAP004078-PA [Anopheles gambiae str. PEST]
gi|333466628|gb|EAA05377.5| AGAP004078-PA [Anopheles gambiae str. PEST]
Length = 1088
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/483 (74%), Positives = 413/483 (85%), Gaps = 1/483 (0%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLSQDAEE+A FYARM+EH+YT+K+AFN NF KDWRK+MT ER ITDL KC+FR
Sbjct: 573 GKEMKLSQDAEEVAGFYARMLEHDYTSKQAFNDNFFKDWRKTMTPHERERITDLEKCNFR 632
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M AYF + +E+ + SKEEK +K NE +TKEYG+C IDGHKEKIGNF+IEPPGLFRG
Sbjct: 633 PMAAYFAEIAEQNRNRSKEEKAALKAANEQLTKEYGICVIDGHKEKIGNFKIEPPGLFRG 692
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRRV ED+IINCS+DSK+P PPPG +WKEVRHDN V+WLASW ENVQGQ
Sbjct: 693 RGEHPKMGLVKRRVMPEDVIINCSQDSKIPSPPPGRRWKEVRHDNTVSWLASWVENVQGQ 752
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKDWQKYETAR+L K I+KIR+ Y+ +WKSKEMRIRQRAVA+YFID
Sbjct: 753 VKYIMLNPSSKLKGEKDWQKYETARRLLKHIDKIRDTYRDEWKSKEMRIRQRAVAMYFID 812
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD+DQADTVGCCSLR EHI LH+E +GK VV FDFLGKDSIRYYNEV VE
Sbjct: 813 KLALRAGNEKDDDQADTVGCCSLRYEHIALHKELNGKENVVVFDFLGKDSIRYYNEVEVE 872
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF ENKK DDLFDRLNTSV+N++L LM+GLTAKVFRT+NAS TLQ+QL E
Sbjct: 873 KRVFKNLELFKENKKPGDDLFDRLNTSVVNEYLKGLMDGLTAKVFRTFNASYTLQKQLEE 932
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP+ S EK+LAYNRANRAVA+LCNHQR+VPK+H+KSMGNLKEKI KR+QV+ ++
Sbjct: 933 LTDPNMSVPEKLLAYNRANRAVAILCNHQRAVPKTHEKSMGNLKEKIRVKREQVEQCQKE 992
Query: 425 LKDAKKAG-ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRIS 483
KD KK+ + DKK L RLKEQL KLE+QETD++ENKTIALGTSKLNYLDPRIS
Sbjct: 993 FKDLKKSNVRDPSAFDKKSKQLERLKEQLKKLELQETDRDENKTIALGTSKLNYLDPRIS 1052
Query: 484 VTW 486
V W
Sbjct: 1053 VAW 1055
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/108 (84%), Positives = 101/108 (93%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V+WLASW ENVQGQVKYIMLNPSSKLKGEKDWQKYETAR+L K I+KIR+ Y+ +WKSK
Sbjct: 738 TVSWLASWVENVQGQVKYIMLNPSSKLKGEKDWQKYETARRLLKHIDKIRDTYRDEWKSK 797
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMRIRQRAVA+YFIDKLALRAGNEKD+DQADTVGCCSLR EHI LH+E
Sbjct: 798 EMRIRQRAVAMYFIDKLALRAGNEKDDDQADTVGCCSLRYEHIALHKE 845
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KI+NKTQR KFRWAIDMA ++VF
Sbjct: 1065 KIFNKTQRDKFRWAIDMADENYVF 1088
>gi|347971191|ref|XP_003436707.1| AGAP004078-PB [Anopheles gambiae str. PEST]
gi|333466629|gb|EGK96321.1| AGAP004078-PB [Anopheles gambiae str. PEST]
Length = 581
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/483 (74%), Positives = 413/483 (85%), Gaps = 1/483 (0%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLSQDAEE+A FYARM+EH+YT+K+AFN NF KDWRK+MT ER ITDL KC+FR
Sbjct: 66 GKEMKLSQDAEEVAGFYARMLEHDYTSKQAFNDNFFKDWRKTMTPHERERITDLEKCNFR 125
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M AYF + +E+ + SKEEK +K NE +TKEYG+C IDGHKEKIGNF+IEPPGLFRG
Sbjct: 126 PMAAYFAEIAEQNRNRSKEEKAALKAANEQLTKEYGICVIDGHKEKIGNFKIEPPGLFRG 185
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRRV ED+IINCS+DSK+P PPPG +WKEVRHDN V+WLASW ENVQGQ
Sbjct: 186 RGEHPKMGLVKRRVMPEDVIINCSQDSKIPSPPPGRRWKEVRHDNTVSWLASWVENVQGQ 245
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKDWQKYETAR+L K I+KIR+ Y+ +WKSKEMRIRQRAVA+YFID
Sbjct: 246 VKYIMLNPSSKLKGEKDWQKYETARRLLKHIDKIRDTYRDEWKSKEMRIRQRAVAMYFID 305
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD+DQADTVGCCSLR EHI LH+E +GK VV FDFLGKDSIRYYNEV VE
Sbjct: 306 KLALRAGNEKDDDQADTVGCCSLRYEHIALHKELNGKENVVVFDFLGKDSIRYYNEVEVE 365
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF ENKK DDLFDRLNTSV+N++L LM+GLTAKVFRT+NAS TLQ+QL E
Sbjct: 366 KRVFKNLELFKENKKPGDDLFDRLNTSVVNEYLKGLMDGLTAKVFRTFNASYTLQKQLEE 425
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP+ S EK+LAYNRANRAVA+LCNHQR+VPK+H+KSMGNLKEKI KR+QV+ ++
Sbjct: 426 LTDPNMSVPEKLLAYNRANRAVAILCNHQRAVPKTHEKSMGNLKEKIRVKREQVEQCQKE 485
Query: 425 LKDAKKAG-ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRIS 483
KD KK+ + DKK L RLKEQL KLE+QETD++ENKTIALGTSKLNYLDPRIS
Sbjct: 486 FKDLKKSNVRDPSAFDKKSKQLERLKEQLKKLELQETDRDENKTIALGTSKLNYLDPRIS 545
Query: 484 VTW 486
V W
Sbjct: 546 VAW 548
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 91/108 (84%), Positives = 101/108 (93%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V+WLASW ENVQGQVKYIMLNPSSKLKGEKDWQKYETAR+L K I+KIR+ Y+ +WKSK
Sbjct: 231 TVSWLASWVENVQGQVKYIMLNPSSKLKGEKDWQKYETARRLLKHIDKIRDTYRDEWKSK 290
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMRIRQRAVA+YFIDKLALRAGNEKD+DQADTVGCCSLR EHI LH+E
Sbjct: 291 EMRIRQRAVAMYFIDKLALRAGNEKDDDQADTVGCCSLRYEHIALHKE 338
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KI+NKTQR KFRWAIDMA ++VF
Sbjct: 558 KIFNKTQRDKFRWAIDMADENYVF 581
>gi|312374595|gb|EFR22117.1| hypothetical protein AND_15747 [Anopheles darlingi]
Length = 529
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/486 (73%), Positives = 412/486 (84%), Gaps = 1/486 (0%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
E G+EM+LS+ AEE+A FYARM++H+YT+K AFN NF KDWRK+MT+ ER I DLSK
Sbjct: 36 FEYDGREMRLSEGAEEVAGFYARMLDHDYTSKPAFNENFFKDWRKTMTQSERERIKDLSK 95
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
C+FR M A+F Q +E+ + +KE+K +K ENE + KEYG+C IDGHKEKIGNF+IEPPG
Sbjct: 96 CNFRPMAAHFAQLAEQNRNRTKEQKAALKAENEQLMKEYGICVIDGHKEKIGNFKIEPPG 155
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRGEHPKMG +KRRV ED+IINCSKDSK+P PPGH+WKEVRHDN V+WLASWTEN
Sbjct: 156 LFRGRGEHPKMGLVKRRVMPEDVIINCSKDSKIPVAPPGHRWKEVRHDNTVSWLASWTEN 215
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
VQGQVKYIMLNPSSKLKGEKDWQKYETAR+L K I+ IR+ Y+ +WKSKEMRIRQRAVA+
Sbjct: 216 VQGQVKYIMLNPSSKLKGEKDWQKYETARRLLKHIDYIRDTYRDEWKSKEMRIRQRAVAM 275
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
YFIDKLALRAGNEKD+DQADTVGCCSLRVEHI+LH+E +GK VV FDFLGKDSIRYYNE
Sbjct: 276 YFIDKLALRAGNEKDDDQADTVGCCSLRVEHIELHKELNGKENVVVFDFLGKDSIRYYNE 335
Query: 301 VPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
V VEKRVFKNL+LF ENKK DDLFDRLNTSVLN +L LME LTAKVFRT+NAS TLQ+
Sbjct: 336 VEVEKRVFKNLELFKENKKAGDDLFDRLNTSVLNDYLRNLMERLTAKVFRTFNASFTLQK 395
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKD 420
QL EL DP+ S EK+LAYNRANRAVA+LCNHQR+VPK+H+KSMGNLKEKI KR+QV
Sbjct: 396 QLEELTDPNSSVPEKLLAYNRANRAVAILCNHQRAVPKTHEKSMGNLKEKIRVKREQVDQ 455
Query: 421 AERALKDAKKAGESKAMT-DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
++ LKD KK+ A DKK L RLKEQL KLE+QETD++ENKTIALGTSKLNYLD
Sbjct: 456 CQKELKDLKKSNVRDASAKDKKTKQLERLKEQLKKLELQETDRDENKTIALGTSKLNYLD 515
Query: 480 PRISVT 485
PRISV
Sbjct: 516 PRISVA 521
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 103/108 (95%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V+WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETAR+L K I+ IR+ Y+ +WKSK
Sbjct: 205 TVSWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARRLLKHIDYIRDTYRDEWKSK 264
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMRIRQRAVA+YFIDKLALRAGNEKD+DQADTVGCCSLRVEHI+LH+E
Sbjct: 265 EMRIRQRAVAMYFIDKLALRAGNEKDDDQADTVGCCSLRVEHIELHKE 312
>gi|327281208|ref|XP_003225341.1| PREDICTED: DNA topoisomerase 1-like [Anolis carolinensis]
Length = 795
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/489 (71%), Positives = 408/489 (83%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTK+ F NF KDWRK MT +E++ IT LSKCDF
Sbjct: 274 GKVMKLSPKAEEVATFFAKMLDHEYTTKDIFRKNFFKDWRKEMTPEEKSTITSLSKCDFT 333
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK M+KE+K+KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 334 QMSQYFKAQSEARKQMTKEDKQKIKEENEQLLKEYGFCIMDNHKERIANFKIEPPGLFRG 393
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKDSKVPPPPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 394 RGNHPKMGMLKRRIMPEDIIINCSKDSKVPPPPPGHKWKEVRHDNKVTWLVSWTENIQGS 453
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKEMR+RQRAVALYFID
Sbjct: 454 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRNQYREDWKSKEMRVRQRAVALYFID 513
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 514 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPEMDGQEYVVEFDFLGKDSIRYYNKVPV 573
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 574 EKRVFKNLQLFMENKQPEDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 633
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL D + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA+R
Sbjct: 634 ELTTADDNIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADAKR 693
Query: 424 ALKDAKKAG------ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK +SK + KK A+ R++EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 694 ELKSAKADAKIRRDEKSKKTVESKKKAVQRVEEQLMKLEVQATDREENKQIALGTSKLNY 753
Query: 478 LDPRISVTW 486
LDPRISV W
Sbjct: 754 LDPRISVAW 762
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKE
Sbjct: 440 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRNQYREDWKSKE 499
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
MR+RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 500 MRVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPEMD 549
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA DF F
Sbjct: 772 KIYNKTQREKFAWAIDMADDDFEF 795
>gi|194763437|ref|XP_001963839.1| GF21232 [Drosophila ananassae]
gi|190618764|gb|EDV34288.1| GF21232 [Drosophila ananassae]
Length = 990
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/482 (72%), Positives = 397/482 (82%), Gaps = 9/482 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS++ EE ATFYA+M+ H+Y TK+ FNTNF KD+RKSMT KE+ +I D KC+F+
Sbjct: 485 GKPLELSEETEEAATFYAKMLNHDYCTKDVFNTNFFKDFRKSMTSKEKEIIKDFRKCNFQ 544
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF +SE+RKA +KEEK K+ENEA+ KEYG C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 545 EMHNYFQAESEKRKAATKEEKLAKKNENEALVKEYGFCMIDGHKEKIGNFRLEPPGLFRG 604
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+QA D+ INC K+S VP PPPG +WKEVRHDN VTWLASW ENVQGQ
Sbjct: 605 RGEHPKMGMIKRRIQASDVSINCGKESHVPSPPPGQRWKEVRHDNTVTWLASWIENVQGQ 664
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 665 VKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFID 724
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E +GK VV FDF GKDSIRYYNEV VE
Sbjct: 725 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVE 784
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+E+KK DDLFDRLNT VLN+HL ELM+GLTAKVFRTYNAS TLQ QL+
Sbjct: 785 KRVFKNLELFMEHKKDGDDLFDRLNTQVLNEHLKELMDGLTAKVFRTYNASKTLQSQLDL 844
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP + EK+LAYNRANRAVA+LCNHQRSVPK H KSM NLKEKI KR + D E
Sbjct: 845 LTDPSATVPEKLLAYNRANRAVAILCNHQRSVPKGHQKSMENLKEKIKAKRDAIDDCE-- 902
Query: 425 LKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
E + DKK L RLKEQL KLE+QETD++ENKTIALGTSKLNYLDPRISV
Sbjct: 903 -------AEYHVLADKKGKQLERLKEQLKKLELQETDRDENKTIALGTSKLNYLDPRISV 955
Query: 485 TW 486
W
Sbjct: 956 AW 957
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 100/108 (92%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW ENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 650 TVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSK 709
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E
Sbjct: 710 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKE 757
>gi|345325267|ref|XP_001509816.2| PREDICTED: DNA topoisomerase 1 [Ornithorhynchus anatinus]
Length = 794
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/493 (72%), Positives = 412/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTK+ F NF KDWRK MT +E++ IT+LSKCDF
Sbjct: 273 GKVMKLSPKAEEVATFFAKMLDHEYTTKDIFRKNFFKDWRKEMTNEEKSNITNLSKCDFN 332
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF +SE RK MSKEEK+KIK+ENE + KEYG C +D H+E+I NFRIEPPGLFRG
Sbjct: 333 HMSQYFKAQSEARKQMSKEEKQKIKEENEQLLKEYGFCVMDNHRERIANFRIEPPGLFRG 392
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+Q EDIIINCSKDSKVPPPPPGH+WKEVRHDN+VTWL SWTEN+QG
Sbjct: 393 RGNHPKMGMLKRRIQPEDIIINCSKDSKVPPPPPGHRWKEVRHDNKVTWLVSWTENIQGS 452
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 453 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 512
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 513 KLALRAGNEKEEGETADTVGCCSLRVEHINLHTEMDGQEYVVEFDFLGKDSIRYYNKVPV 572
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL +LMEGLTAKVFRTYNAS+TLQQQL
Sbjct: 573 EKRVFKNLQLFMENKQPEDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASVTLQQQLK 632
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ +A R
Sbjct: 633 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKDQLANARR 692
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK + +SK + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 693 DLKSAKADAKVQRDAKSKKVVETKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 752
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 753 LDPRISVAWCKKW 765
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 439 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 498
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 499 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHTEMD 548
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 771 KIYNKTQREKFAWAIDMADEDYEF 794
>gi|391327312|ref|XP_003738147.1| PREDICTED: DNA topoisomerase 1-like [Metaseiulus occidentalis]
Length = 1011
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/487 (72%), Positives = 407/487 (83%), Gaps = 2/487 (0%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK+MKLS +AEEIATFYARM++H+YT KE+FN+NF +DWRKSMT E+ ITDL KCDF
Sbjct: 497 GKKMKLSLEAEEIATFYARMLDHDYTQKESFNSNFFQDWRKSMTAHEKETITDLKKCDFT 556
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF +K+EERK SKEEK + K NEA+ KEYG+C IDGHK++IGNF+IEPPGLFRG
Sbjct: 557 HMANYFKEKTEERKNRSKEEKLEEKKMNEALQKEYGICIIDGHKQRIGNFKIEPPGLFRG 616
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG+LKRR Q ED+IIN SK + VP PPPGH+WKEVRHDN VTWL WTENV G
Sbjct: 617 RGEHPKMGRLKRRTQPEDVIINISKGAPVPKPPPGHRWKEVRHDNTVTWLCCWTENVLGN 676
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYIMLNPSSKLKGEKD+QKYETAR L + KIRENYQ+DWKSKEMR+RQRAVALYFID
Sbjct: 677 NKYIMLNPSSKLKGEKDFQKYETARLLKSCVKKIRENYQSDWKSKEMRVRQRAVALYFID 736
Query: 245 KLALRAGNEKDED-QADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEKD D QADTVGCCSLRVEH++LH+E + K VV FDFLGKDSIRY N VPV
Sbjct: 737 KLALRAGNEKDADEQADTVGCCSLRVEHVRLHDEWEDKENVVEFDFLGKDSIRYQNWVPV 796
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNL++F ENKK DDLFDRLNTS+LNKHL+ELMEGLTAKVFRTYNAS TLQ+QL+
Sbjct: 797 EKRVFKNLRIFCENKKPGDDLFDRLNTSILNKHLNELMEGLTAKVFRTYNASKTLQEQLD 856
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L D D S EK+LAYNRANRAVAVLCNHQR+VPK+ +KSM NL++KI K+ Q+ D +R
Sbjct: 857 KLTDADMSIPEKLLAYNRANRAVAVLCNHQRAVPKTFEKSMENLQKKIDEKQDQIADVKR 916
Query: 424 ALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRIS 483
KDAK++G+ KA DKK+ L L++QL +L VQ TD+EENK IALGTSKLNYLDPRIS
Sbjct: 917 EFKDAKRSGD-KATADKKQKRLHALEDQLKRLHVQATDREENKQIALGTSKLNYLDPRIS 975
Query: 484 VTWLASW 490
V W W
Sbjct: 976 VAWCKKW 982
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/113 (79%), Positives = 100/113 (88%), Gaps = 1/113 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL WTENV G KYIMLNPSSKLKGEKD+QKYETAR L + KIRENYQ+DWKSK
Sbjct: 662 TVTWLCCWTENVLGNNKYIMLNPSSKLKGEKDFQKYETARLLKSCVKKIRENYQSDWKSK 721
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEEKDEK 594
EMR+RQRAVALYFIDKLALRAGNEKD D QADTVGCCSLRVEH++LH+E ++K
Sbjct: 722 EMRVRQRAVALYFIDKLALRAGNEKDADEQADTVGCCSLRVEHVRLHDEWEDK 774
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
K+YNKTQR KFRWAI+MA AD+ F
Sbjct: 988 KVYNKTQRDKFRWAIEMADADYKF 1011
>gi|195396943|ref|XP_002057088.1| GJ16891 [Drosophila virilis]
gi|194146855|gb|EDW62574.1| GJ16891 [Drosophila virilis]
Length = 1045
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/491 (71%), Positives = 403/491 (82%), Gaps = 5/491 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS++ EE ATFYA+M+ H+Y TK+ FN NF KD+RKSMT KE+ +I D KC+F+
Sbjct: 526 GKPLELSEETEEAATFYAKMLNHDYCTKDVFNNNFFKDFRKSMTPKEKEIIKDFRKCNFQ 585
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH +F+ +SE+RKA +KEEK K+ENEA+ KEYG C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 586 EMHQFFLAESEKRKAATKEEKLAKKNENEALIKEYGFCMIDGHKEKIGNFRLEPPGLFRG 645
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+ A D+ INC K SKVP PPPG +WKEVRHDN VTWLASWTENVQGQ
Sbjct: 646 RGEHPKMGMIKRRIAAADVSINCGKQSKVPQPPPGERWKEVRHDNTVTWLASWTENVQGQ 705
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 706 VKYIMLNPSSKLKGEKDHIKYETARRLDKFIDKIRATYRDEWKSKEMRVRQRAVALYFID 765
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E +GK VV FDF GKDSIRYYNEV VE
Sbjct: 766 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVE 825
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+ENKK DDLFDRLNT VLN+HL ELM+GLTAKVFRTYNAS TLQ QL+
Sbjct: 826 KRVFKNLELFMENKKDGDDLFDRLNTQVLNEHLKELMDGLTAKVFRTYNASKTLQNQLDL 885
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L D + S AEK+L YNRANRAVA+LCNHQRSVPK H KSM NLKEKI KR + D E
Sbjct: 886 LTDSNASVAEKLLTYNRANRAVAILCNHQRSVPKGHQKSMENLKEKIRAKRDAIDDCEAE 945
Query: 425 LKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
D KKA + + + DKK L RLK+QL KLE+QETD++ENKTIALGTSKLNYLD
Sbjct: 946 YHDLKKAAKRGSVKERVIADKKGKILERLKDQLKKLELQETDRDENKTIALGTSKLNYLD 1005
Query: 480 PRISVTWLASW 490
PRI+V W +
Sbjct: 1006 PRITVAWCKKY 1016
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 93/108 (86%), Positives = 101/108 (93%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 691 TVTWLASWTENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKFIDKIRATYRDEWKSK 750
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E
Sbjct: 751 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKE 798
>gi|45384130|ref|NP_990441.1| DNA topoisomerase 1 [Gallus gallus]
gi|1786132|dbj|BAA19101.1| DNA topoisomerase I [Gallus gallus]
Length = 766
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/493 (72%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E++ IT LSKCDF
Sbjct: 245 GKVMKLSTKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTSEEKSTITSLSKCDFT 304
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF ++E RK MSKEEK+KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 305 HMSQYFKAQTEARKQMSKEEKQKIKEENERLLKEYGYCVMDNHKERIANFKIEPPGLFRG 364
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKDSKVPPPPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 365 RGNHPKMGMLKRRIMPEDIIINCSKDSKVPPPPPGHKWKEVRHDNKVTWLVSWTENIQGS 424
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 425 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 484
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 485 KLALRAGNEKEEGETADTVGCCSLRVEHIKLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 544
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 545 EKRVFKNLQLFMENKQPEDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 604
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL +PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 605 ELTNPDDNIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 664
Query: 424 ALKDAKKAG------ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK +SK + KK A+ R++EQL+KLEVQ TD+EENK IAL TSKLNY
Sbjct: 665 ELKSAKADAKVRRDEKSKKAVESKKKAVQRIEEQLMKLEVQATDREENKQIALSTSKLNY 724
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 725 LDPRISVAWCKKW 737
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 99/110 (90%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 411 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 470
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+LH E D
Sbjct: 471 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLHPELD 520
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 743 KIYNKTQREKFAWAIDMAEEDYEF 766
>gi|326931793|ref|XP_003212009.1| PREDICTED: DNA topoisomerase 1-like [Meleagris gallopavo]
Length = 758
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/493 (72%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E++ IT LSKCDF
Sbjct: 237 GKVMKLSTKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTSEEKSTITSLSKCDFT 296
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF ++E RK MSKEEK+KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 297 HMSQYFKAQTEARKQMSKEEKQKIKEENERLLKEYGYCVMDNHKERIANFKIEPPGLFRG 356
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKDSKVPPPPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 357 RGNHPKMGMLKRRIMPEDIIINCSKDSKVPPPPPGHKWKEVRHDNKVTWLVSWTENIQGS 416
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 417 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 476
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 477 KLALRAGNEKEEGETADTVGCCSLRVEHIKLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 536
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 537 EKRVFKNLQLFMENKQPEDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 596
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL +PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 597 ELTNPDDNIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 656
Query: 424 ALKDAKKAG------ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK +SK + KK A+ R++EQL+KLEVQ TD+EENK IAL TSKLNY
Sbjct: 657 ELKSAKADAKVRRDEKSKKAVESKKKAVQRIEEQLMKLEVQATDREENKQIALSTSKLNY 716
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 717 LDPRISVAWCKKW 729
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 99/110 (90%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 403 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 462
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+LH E D
Sbjct: 463 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLHPELD 512
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 735 KIYNKTQREKFAWAIDMAEEDYEF 758
>gi|449486172|ref|XP_002190040.2| PREDICTED: DNA topoisomerase 1 [Taeniopygia guttata]
Length = 766
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/493 (72%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E++ IT LSKCDF
Sbjct: 245 GKVMKLSTKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTSEEKSTITSLSKCDFT 304
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF +SE RK MSKEEK+KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 305 HMSQYFKAQSEARKQMSKEEKQKIKEENERLLKEYGYCVMDNHKERIANFKIEPPGLFRG 364
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKDSK+P PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 365 RGNHPKMGMLKRRIMPEDIIINCSKDSKIPAPPPGHKWKEVRHDNKVTWLVSWTENIQGS 424
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 425 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 484
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 485 KLALRAGNEKEEGETADTVGCCSLRVEHIKLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 544
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 545 EKRVFKNLQLFMENKQPEDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 604
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL +PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 605 ELTNPDDNIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 664
Query: 424 ALKDAKKAG------ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK +SK + KK A+ R++EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 665 ELKSAKADAKVRRDEKSKKTVESKKKAVQRIEEQLMKLEVQATDREENKQIALGTSKLNY 724
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 725 LDPRISVAWCKKW 737
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 99/110 (90%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 411 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 470
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+LH E D
Sbjct: 471 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLHPELD 520
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 743 KIYNKTQREKFAWAIDMAEEDYEF 766
>gi|317418978|emb|CBN81016.1| DNA topoisomerase 1 [Dicentrarchus labrax]
Length = 755
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/493 (70%), Positives = 406/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTK+ F NF KDW+K MT +ERA ITDL KCDF
Sbjct: 234 GKHMKLSPGAEEVATFFAKMLDHEYTTKDIFRKNFFKDWKKEMTAEERAKITDLKKCDFT 293
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RKAM+K+EK KIK ENE + +EYG C +D H+E+I NFRIEPPGLFRG
Sbjct: 294 EMSEYFKAQSEARKAMTKDEKLKIKAENERLLQEYGFCIMDNHRERIANFRIEPPGLFRG 353
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR++ +DIIINCSKDSK P PPPG KWKEVRHDN+VTWL SWTEN+QG
Sbjct: 354 RGDHPKMGMLKRRIRPQDIIINCSKDSKHPEPPPGTKWKEVRHDNKVTWLVSWTENIQGS 413
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 414 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRTQYREDWKSKEMRIRQRAVALYFID 473
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E +G YVV FDFLGKDSIRYYN+VPV
Sbjct: 474 KLALRAGNEKEEGETADTVGCCSLRVEHIKLYPENEGLEYVVEFDFLGKDSIRYYNKVPV 533
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTSVLNKHL ELM+GLTAKVFRTYNASITLQQQL
Sbjct: 534 EKRVFKNLQLFMENKEPDDDLFDRLNTSVLNKHLQELMDGLTAKVFRTYNASITLQQQLK 593
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L D + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI KR Q+ DA+R
Sbjct: 594 VLTSADENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMQNLQAKIDAKRDQLSDAKR 653
Query: 424 ALKDAKKAG------ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK +K +SK + KK A+ R++EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 654 ELKSSKADAKVRRDEKSKKAVETKKKAVQRIEEQLMKLEVQATDREENKQIALGTSKLNY 713
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 714 LDPRISVAWCKKW 726
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 98/108 (90%), Gaps = 1/108 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKE
Sbjct: 400 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRTQYREDWKSKE 459
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEE 590
MRIRQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E
Sbjct: 460 MRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLYPE 507
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA DF F
Sbjct: 732 KIYNKTQREKFAWAIDMADDDFEF 755
>gi|198470017|ref|XP_002134477.1| GA24044 [Drosophila pseudoobscura pseudoobscura]
gi|198147142|gb|EDY73104.1| GA24044 [Drosophila pseudoobscura pseudoobscura]
Length = 1054
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/487 (71%), Positives = 398/487 (81%), Gaps = 5/487 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ + LS++ EE ATFYA+M+ H+Y TK+ FN NF KD+RKSMT KE+ +I D KC+F+
Sbjct: 535 GRPLDLSEETEEAATFYAKMLNHDYCTKDIFNNNFFKDFRKSMTSKEKEIIKDFRKCNFQ 594
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF +SE+RK +KEEK K+ENEA+ KEYG C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 595 EMHEYFQAESEKRKQATKEEKLAKKNENEALIKEYGFCMIDGHKEKIGNFRLEPPGLFRG 654
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+ A D+ INC K+SKVPPPPPG +WKEVRHDN VTWLASW ENVQGQ
Sbjct: 655 RGEHPKMGMIKRRIGASDVSINCGKESKVPPPPPGSRWKEVRHDNTVTWLASWIENVQGQ 714
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L KSI+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 715 VKYIMLNPSSKLKGEKDHIKYETARRLDKSIDKIRATYRDEWKSKEMRVRQRAVALYFID 774
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E + K VV FDF GKDSIRYYNEV VE
Sbjct: 775 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNDKENVVVFDFPGKDSIRYYNEVEVE 834
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+E+KK DDLFDRLNT VLN+HL ELM+GLTAKVFRTYNAS TLQ QL+
Sbjct: 835 KRVFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMDGLTAKVFRTYNASKTLQNQLDL 894
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP + EK+L YNRANRAVA+LCNHQRSVPK H KSM NLKEKI KR + D E
Sbjct: 895 LTDPSATVPEKLLTYNRANRAVAILCNHQRSVPKGHQKSMENLKEKIRAKRDAIDDCESE 954
Query: 425 LKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
D KKA + K DKK L RLK+QL KLE+QETD++ENKTIALGTSKLNYLD
Sbjct: 955 YHDLKKAAKRGSVKEKVNADKKGKQLERLKDQLKKLELQETDRDENKTIALGTSKLNYLD 1014
Query: 480 PRISVTW 486
PRISV W
Sbjct: 1015 PRISVAW 1021
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/112 (83%), Positives = 104/112 (92%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW ENVQGQVKYIMLNPSSKLKGEKD KYETAR+L KSI+KIR Y+ +WKSK
Sbjct: 700 TVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKSIDKIRATYRDEWKSK 759
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E ++K
Sbjct: 760 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNDK 811
>gi|195163872|ref|XP_002022773.1| GL14571 [Drosophila persimilis]
gi|194104796|gb|EDW26839.1| GL14571 [Drosophila persimilis]
Length = 1042
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/487 (71%), Positives = 398/487 (81%), Gaps = 5/487 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ + LS++ EE ATFYA+M+ H+Y TK+ FN NF KD+RKSMT KE+ +I D KC+F+
Sbjct: 523 GRPLDLSEETEEAATFYAKMLNHDYCTKDIFNNNFFKDFRKSMTSKEKEIIKDFRKCNFQ 582
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF +SE+RK +KEEK K+ENEA+ KEYG C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 583 EMHEYFQAESEKRKQATKEEKLAKKNENEALIKEYGFCMIDGHKEKIGNFRLEPPGLFRG 642
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+ A D+ INC K+SKVPPPPPG +WKEVRHDN VTWLASW ENVQGQ
Sbjct: 643 RGEHPKMGMIKRRIGASDVSINCGKESKVPPPPPGSRWKEVRHDNTVTWLASWIENVQGQ 702
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L KSI+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 703 VKYIMLNPSSKLKGEKDHIKYETARRLDKSIDKIRATYRDEWKSKEMRVRQRAVALYFID 762
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E + K VV FDF GKDSIRYYNEV VE
Sbjct: 763 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNDKENVVVFDFPGKDSIRYYNEVEVE 822
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+E+KK DDLFDRLNT VLN+HL ELM+GLTAKVFRTYNAS TLQ QL+
Sbjct: 823 KRVFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMDGLTAKVFRTYNASKTLQNQLDL 882
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP + EK+L YNRANRAVA+LCNHQRSVPK H KSM NLKEKI KR + D E
Sbjct: 883 LTDPSATVPEKLLTYNRANRAVAILCNHQRSVPKGHQKSMENLKEKIRAKRDAIDDCESE 942
Query: 425 LKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
D KKA + K DKK L RLK+QL KLE+QETD++ENKTIALGTSKLNYLD
Sbjct: 943 YHDLKKAAKRGSVKEKVNADKKGKQLERLKDQLKKLELQETDRDENKTIALGTSKLNYLD 1002
Query: 480 PRISVTW 486
PRISV W
Sbjct: 1003 PRISVAW 1009
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/112 (83%), Positives = 104/112 (92%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW ENVQGQVKYIMLNPSSKLKGEKD KYETAR+L KSI+KIR Y+ +WKSK
Sbjct: 688 TVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKSIDKIRATYRDEWKSK 747
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E ++K
Sbjct: 748 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNDK 799
>gi|449284003|gb|EMC90586.1| DNA topoisomerase 1, partial [Columba livia]
Length = 747
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E++ IT LSKCDF
Sbjct: 226 GKVMKLSTKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTSEEKSTITSLSKCDFT 285
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF ++E RK MSKEEK+KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 286 HMSQYFKAQTEARKQMSKEEKQKIKEENERLLKEYGYCVMDNHKERIANFKIEPPGLFRG 345
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKDSK+P PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 346 RGNHPKMGMLKRRIMPEDIIINCSKDSKIPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 405
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 406 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 465
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 466 KLALRAGNEKEEGETADTVGCCSLRVEHIKLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 525
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 526 EKRVFKNLQLFMENKQPEDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 585
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL +PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 586 ELTNPDDNIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 645
Query: 424 ALKDAKKAG------ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK +SK + KK A+ R++EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 646 ELKSAKADAKVRRDEKSKKTVESKKKAVQRIEEQLMKLEVQATDREENKQIALGTSKLNY 705
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 706 LDPRISVAWCKKW 718
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 99/110 (90%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 392 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 451
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+LH E D
Sbjct: 452 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLHPELD 501
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 724 KIYNKTQREKFAWAIDMAEEDYEF 747
>gi|297707097|ref|XP_002830355.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 1 [Pongo abelii]
Length = 768
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/494 (70%), Positives = 408/494 (82%), Gaps = 8/494 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKE+++KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQTEARKQMSKEKRQKIKEENEKLLKEYGFCVMDNHKERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGH-KWKEVRHDNQVTWLASWTENVQG 183
RG HPKMG LKRR+ EDIIINCSKD+KVP PP +WKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPSRTIRWKEVRHDNKVTWLVSWTENIQG 425
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFI
Sbjct: 426 SIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFI 485
Query: 244 DKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
DKLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VP
Sbjct: 486 DKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVP 545
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VEKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 VEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQL 605
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA
Sbjct: 606 KELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADAR 665
Query: 423 RALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLN 476
R LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLN
Sbjct: 666 RDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLN 725
Query: 477 YLDPRISVTWLASW 490
YLDPRI+V W W
Sbjct: 726 YLDPRITVAWCKKW 739
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 413 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 472
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 473 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 522
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 745 KIYNKTQREKFAWAIDMADEDYEF 768
>gi|432102732|gb|ELK30211.1| DNA topoisomerase 1 [Myotis davidii]
Length = 751
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/493 (72%), Positives = 411/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 230 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 289
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE I KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 290 QMSQYFKAQSEARKQMSKEEKLKIKEENEKILKEYGFCIMDNHRERIANFKIEPPGLFRG 349
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 350 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 409
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 410 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 469
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 470 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 529
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT++LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 530 EKRVFKNLQLFMENKQPEDDLFDRLNTAILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 589
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 590 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 649
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 650 DLKSAKADAKVMKDTKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 709
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 710 LDPRISVAWCKKW 722
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 396 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 455
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 456 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 505
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 728 KIYNKTQREKFAWAIDMADEDYEF 751
>gi|402882519|ref|XP_003904787.1| PREDICTED: DNA topoisomerase 1 [Papio anubis]
Length = 767
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKTIITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 606 ELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMADEDYEF 767
>gi|403290675|ref|XP_003936435.1| PREDICTED: DNA topoisomerase 1 [Saimiri boliviensis boliviensis]
Length = 767
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 606 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMADEDYEF 767
>gi|431894391|gb|ELK04191.1| DNA topoisomerase 1 [Pteropus alecto]
Length = 749
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 411/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 228 GKVMKLSPKAEEVATFFAKMLDHEYTTKEVFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 287
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 288 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHKERIANFKIEPPGLFRG 347
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 348 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 407
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 408 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 467
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 468 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 527
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT++LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 528 EKRVFKNLQLFMENKQPEDDLFDRLNTAILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 587
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA +
Sbjct: 588 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARK 647
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 648 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 707
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 708 LDPRISVAWCKKW 720
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 394 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 453
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 454 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 503
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 726 KIYNKTQREKFAWAIDMADEDYEF 749
>gi|388452708|ref|NP_001253441.1| DNA topoisomerase 1 [Macaca mulatta]
gi|380816072|gb|AFE79910.1| DNA topoisomerase 1 [Macaca mulatta]
gi|383421209|gb|AFH33818.1| DNA topoisomerase 1 [Macaca mulatta]
gi|384949142|gb|AFI38176.1| DNA topoisomerase 1 [Macaca mulatta]
Length = 767
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 606 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMADEDYEF 767
>gi|387539764|gb|AFJ70509.1| DNA topoisomerase 1 [Macaca mulatta]
Length = 767
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 606 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMADEDYEF 767
>gi|296200465|ref|XP_002747610.1| PREDICTED: DNA topoisomerase 1 [Callithrix jacchus]
Length = 767
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ ++T+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIVTNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 606 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMADEDYEF 767
>gi|426242035|ref|XP_004014884.1| PREDICTED: DNA topoisomerase 1 [Ovis aries]
Length = 851
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 330 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 389
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 390 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 449
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 450 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 509
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 510 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 569
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 570 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 629
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 630 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 689
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 690 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 749
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 750 DLKSAKADAKVLKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 809
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 810 LDPRITVAWCKKW 822
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 496 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 555
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 556 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 605
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 828 KIYNKTQREKFAWAIDMADEDYEF 851
>gi|57639320|gb|AAW55580.1| TOP1 [Macaca fascicularis]
Length = 560
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 39 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 98
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 99 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 158
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 159 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 218
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 219 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 278
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 279 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 338
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 339 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 398
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 399 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 458
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 459 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 518
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 519 LDPRITVAWCKKW 531
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 205 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 264
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 265 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 314
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 537 KIYNKTQREKFAWAIDMADEDYEF 560
>gi|24642136|ref|NP_511161.2| topoisomerase 1, isoform A [Drosophila melanogaster]
gi|62473712|ref|NP_001014742.1| topoisomerase 1, isoform C [Drosophila melanogaster]
gi|7293054|gb|AAF48440.1| topoisomerase 1, isoform A [Drosophila melanogaster]
gi|61677900|gb|AAX52496.1| topoisomerase 1, isoform C [Drosophila melanogaster]
gi|71834182|gb|AAZ41763.1| RE58921p [Drosophila melanogaster]
Length = 974
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/482 (72%), Positives = 399/482 (82%), Gaps = 9/482 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS++ EE ATFYA+M+ H+Y TKE FN NF KD+RKSMT +ER +I D KC+F+
Sbjct: 469 GKPLELSEETEEAATFYAKMLNHDYCTKEVFNNNFFKDFRKSMTPREREIIKDFRKCNFQ 528
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE+RKA SKEEK K+ENEA+ KE+G C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 529 EMFNYFQAESEKRKAASKEEKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRG 588
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+QA D+ INC KDSKVP PPPG +WKEVRHDN VTWLASW ENVQGQ
Sbjct: 589 RGEHPKMGMIKRRIQASDVSINCGKDSKVPSPPPGSRWKEVRHDNTVTWLASWIENVQGQ 648
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 649 VKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFID 708
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E +GK VV FDF GKDSIRYYNEV VE
Sbjct: 709 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVE 768
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+E+KK DDLFDRLNT VLN+HL ELMEGLTAKVFRTYNAS TLQ QL+
Sbjct: 769 KRVFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDL 828
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP + EK+LAYNRANRAVA+LCNHQRSVPKSH+KSM NLKEKI KR+ ++ E
Sbjct: 829 LTDPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAIEKCE-- 886
Query: 425 LKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
E + +KK L RL++QL KLE+QETD++ENKTIALGTSKLNYLDPRISV
Sbjct: 887 -------SEYHSRDEKKGKQLERLRDQLKKLELQETDRDENKTIALGTSKLNYLDPRISV 939
Query: 485 TW 486
W
Sbjct: 940 AW 941
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 100/108 (92%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW ENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 634 TVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSK 693
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E
Sbjct: 694 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKE 741
>gi|386764449|ref|NP_001245679.1| topoisomerase 1, isoform D [Drosophila melanogaster]
gi|383293405|gb|AFH07393.1| topoisomerase 1, isoform D [Drosophila melanogaster]
Length = 970
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/482 (72%), Positives = 399/482 (82%), Gaps = 9/482 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS++ EE ATFYA+M+ H+Y TKE FN NF KD+RKSMT +ER +I D KC+F+
Sbjct: 465 GKPLELSEETEEAATFYAKMLNHDYCTKEVFNNNFFKDFRKSMTPREREIIKDFRKCNFQ 524
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE+RKA SKEEK K+ENEA+ KE+G C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 525 EMFNYFQAESEKRKAASKEEKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRG 584
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+QA D+ INC KDSKVP PPPG +WKEVRHDN VTWLASW ENVQGQ
Sbjct: 585 RGEHPKMGMIKRRIQASDVSINCGKDSKVPSPPPGSRWKEVRHDNTVTWLASWIENVQGQ 644
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 645 VKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFID 704
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E +GK VV FDF GKDSIRYYNEV VE
Sbjct: 705 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVE 764
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+E+KK DDLFDRLNT VLN+HL ELMEGLTAKVFRTYNAS TLQ QL+
Sbjct: 765 KRVFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDL 824
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP + EK+LAYNRANRAVA+LCNHQRSVPKSH+KSM NLKEKI KR+ ++ E
Sbjct: 825 LTDPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAIEKCE-- 882
Query: 425 LKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
E + +KK L RL++QL KLE+QETD++ENKTIALGTSKLNYLDPRISV
Sbjct: 883 -------SEYHSRDEKKGKQLERLRDQLKKLELQETDRDENKTIALGTSKLNYLDPRISV 935
Query: 485 TW 486
W
Sbjct: 936 AW 937
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 100/108 (92%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW ENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 630 TVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSK 689
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E
Sbjct: 690 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKE 737
>gi|267147|sp|P30189.1|TOP1_DROME RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|158643|gb|AAA28951.1| topoisomerase I [Drosophila melanogaster]
gi|1772834|gb|AAC24158.1| DNA topoisomerase I [Drosophila melanogaster]
Length = 972
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/482 (72%), Positives = 399/482 (82%), Gaps = 9/482 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS++ EE ATFYA+M+ H+Y TKE FN NF KD+RKSMT +ER +I D KC+F+
Sbjct: 467 GKPLELSEETEEAATFYAKMLNHDYCTKEVFNNNFFKDFRKSMTPREREIIKDFRKCNFQ 526
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE+RKA SKEEK K+ENEA+ KE+G C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 527 EMFNYFQAESEKRKAASKEEKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRG 586
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+QA D+ INC KDSKVP PPPG +WKEVRHDN VTWLASW ENVQGQ
Sbjct: 587 RGEHPKMGMIKRRIQASDVSINCGKDSKVPSPPPGSRWKEVRHDNTVTWLASWIENVQGQ 646
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 647 VKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFID 706
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E +GK VV FDF GKDSIRYYNEV VE
Sbjct: 707 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVE 766
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+E+KK DDLFDRLNT VLN+HL ELMEGLTAKVFRTYNAS TLQ QL+
Sbjct: 767 KRVFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDL 826
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP + EK+LAYNRANRAVA+LCNHQRSVPKSH+KSM NLKEKI KR+ ++ E
Sbjct: 827 LTDPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAIEKCE-- 884
Query: 425 LKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
E + +KK L RL++QL KLE+QETD++ENKTIALGTSKLNYLDPRISV
Sbjct: 885 -------SEYHSRDEKKGKQLERLRDQLKKLELQETDRDENKTIALGTSKLNYLDPRISV 937
Query: 485 TW 486
W
Sbjct: 938 AW 939
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 100/108 (92%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW ENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 632 TVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSK 691
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E
Sbjct: 692 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKE 739
>gi|417404462|gb|JAA48983.1| Putative dna topoisomerase i [Desmodus rotundus]
Length = 766
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ IT+LSKCDF
Sbjct: 245 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNTITNLSKCDFT 304
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 305 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHRERIANFKIEPPGLFRG 364
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKDSK+P PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 365 RGNHPKMGMLKRRIMPEDIIINCSKDSKIPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 424
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 425 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 484
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 485 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 544
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT++LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 545 EKRVFKNLQLFMENKQPEDDLFDRLNTAILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 604
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 605 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 664
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K +++ + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 665 DLKSAKADAKVMKDAKTRKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 724
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 725 LDPRISVAWCKKW 737
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 411 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 470
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 471 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 520
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 743 KIYNKTQREKFAWAIDMADEDYEF 766
>gi|473581|gb|AAB60379.1| DNA topoisomerase I, partial [Homo sapiens]
Length = 761
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 240 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 299
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 300 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 359
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 360 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 419
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 420 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 479
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 480 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 539
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 540 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 599
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 600 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 659
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 660 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 719
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 720 LDPRITVAWCKKW 732
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 406 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 465
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 466 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 515
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 738 KIYNKTQREKFAWAIDMADEDYEF 761
>gi|332209058|ref|XP_003253628.1| PREDICTED: DNA topoisomerase 1 [Nomascus leucogenys]
Length = 767
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 606 ELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMADEDYEF 767
>gi|195448226|ref|XP_002071565.1| GK25865 [Drosophila willistoni]
gi|194167650|gb|EDW82551.1| GK25865 [Drosophila willistoni]
Length = 997
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/487 (71%), Positives = 399/487 (81%), Gaps = 5/487 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+++ EE ATFYA+M+ H+Y TK+ FNTNF KD+RK+MT++E+ +I D KC+F+
Sbjct: 478 GKPLDLTEETEEAATFYAKMLNHDYCTKDVFNTNFFKDFRKTMTDREKEIIKDFRKCNFQ 537
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M +F +SE RKA +K+EK K+ENEA+ KEYG C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 538 EMFEFFQAESERRKAATKDEKLAKKNENEALVKEYGFCMIDGHKEKIGNFRLEPPGLFRG 597
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+ A ++ INC K+SKVP PPPG +WKEVRHDN VTWLASW ENVQGQ
Sbjct: 598 RGEHPKMGMIKRRIGASEVSINCGKNSKVPTPPPGQRWKEVRHDNTVTWLASWVENVQGQ 657
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 658 VKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFID 717
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH E +GK VV FDF GKDSIRYYNEV VE
Sbjct: 718 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHRELNGKENVVVFDFPGKDSIRYYNEVEVE 777
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+ENKK DDLFDRLNT VLN+HL ELM+GLTAKVFRTYNAS TLQ QL++
Sbjct: 778 KRVFKNLELFMENKKEGDDLFDRLNTQVLNEHLKELMDGLTAKVFRTYNASKTLQDQLDK 837
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L D D + AEK+LAYNRANRAVA+LCNHQRSVPK H KSM NLKEKI KR + D E
Sbjct: 838 LTDGDATVAEKLLAYNRANRAVAILCNHQRSVPKGHQKSMENLKEKIRAKRDAIDDCESE 897
Query: 425 LKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
D KKA + K DKK L RLKEQL KLE+QETD++ENKTIAL TSKLNYLD
Sbjct: 898 YHDLKKAAKRGSVKEKVNADKKGKQLERLKEQLKKLELQETDRDENKTIALSTSKLNYLD 957
Query: 480 PRISVTW 486
PRISV W
Sbjct: 958 PRISVAW 964
Score = 197 bits (501), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 99/108 (91%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW ENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 643 TVTWLASWVENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSK 702
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH E
Sbjct: 703 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHRE 750
>gi|11225260|ref|NP_003277.1| DNA topoisomerase 1 [Homo sapiens]
gi|114682024|ref|XP_514649.2| PREDICTED: DNA topoisomerase 1 [Pan troglodytes]
gi|397511150|ref|XP_003825942.1| PREDICTED: DNA topoisomerase 1 [Pan paniscus]
gi|426391693|ref|XP_004062202.1| PREDICTED: DNA topoisomerase 1 [Gorilla gorilla gorilla]
gi|12644118|sp|P11387.2|TOP1_HUMAN RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|339804|gb|AAA61206.1| topoisomerase I [Homo sapiens]
gi|119596400|gb|EAW75994.1| topoisomerase (DNA) I, isoform CRA_a [Homo sapiens]
gi|119596401|gb|EAW75995.1| topoisomerase (DNA) I, isoform CRA_a [Homo sapiens]
gi|158259347|dbj|BAF85632.1| unnamed protein product [Homo sapiens]
gi|410223172|gb|JAA08805.1| topoisomerase (DNA) I [Pan troglodytes]
gi|410249722|gb|JAA12828.1| topoisomerase (DNA) I [Pan troglodytes]
gi|410302634|gb|JAA29917.1| topoisomerase (DNA) I [Pan troglodytes]
gi|410337127|gb|JAA37510.1| topoisomerase (DNA) I [Pan troglodytes]
Length = 765
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 244 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 303
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 304 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 363
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 364 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 423
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 424 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 483
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 484 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 543
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 544 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 603
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 604 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 663
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 664 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 723
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 724 LDPRITVAWCKKW 736
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 410 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 469
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 470 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 519
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 742 KIYNKTQREKFAWAIDMADEDYEF 765
>gi|194894661|ref|XP_001978102.1| GG17874 [Drosophila erecta]
gi|190649751|gb|EDV47029.1| GG17874 [Drosophila erecta]
Length = 969
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/482 (72%), Positives = 397/482 (82%), Gaps = 9/482 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK M+LS++ EE ATFYA+M+ H+Y TKE FN NF KD+RKSMT KER +I D KC F
Sbjct: 464 GKPMELSEETEEAATFYAKMLNHDYCTKEVFNNNFFKDFRKSMTSKEREIIKDFRKCGFN 523
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M +F +SE+RKA +KEEK K+ENEA+ KE+G C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 524 EMFNFFQAESEKRKAATKEEKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRG 583
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+QA D+ INC K+SKVP PPPG +WKEVRHDN VTWLASW ENVQGQ
Sbjct: 584 RGEHPKMGMIKRRIQASDVSINCGKESKVPSPPPGSRWKEVRHDNTVTWLASWIENVQGQ 643
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 644 VKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFID 703
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E +GK VV FDF GKDSIRYYNEV VE
Sbjct: 704 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVE 763
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+E+KK DDLFDRLNT VLN+HL ELMEGLTAKVFRTYNAS TLQ QL+
Sbjct: 764 KRVFKNLELFMEHKKDGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDL 823
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP + EK+LAYNRANRAVA+LCNHQRSVPKSH+KSM NLKEKI KR+ +K E
Sbjct: 824 LTDPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAIKKCE-- 881
Query: 425 LKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
E + +KK L RLK+QL KLE+QETD++ENKTIALGTSKLNYLDPRISV
Sbjct: 882 -------AEYHSRDEKKGKQLERLKDQLKKLELQETDRDENKTIALGTSKLNYLDPRISV 934
Query: 485 TW 486
W
Sbjct: 935 AW 936
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 100/108 (92%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW ENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 629 TVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSK 688
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E
Sbjct: 689 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKE 736
>gi|38503303|sp|Q7YR26.1|TOP1_CERAE RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|32400376|dbj|BAC78678.1| topoisomerase I [Chlorocebus aethiops]
Length = 767
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 606 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMADEDYEF 767
>gi|339806|gb|AAA61207.1| topoisomerase I [Homo sapiens]
Length = 765
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 244 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 303
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 304 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 363
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 364 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 423
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 424 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 483
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 484 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 543
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 544 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 603
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 604 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 663
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 664 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 723
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 724 LDPRITVAWCKKW 736
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 410 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 469
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 470 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 519
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 742 KIYNKTQREKFAWAIDMADEDYEF 765
>gi|119596402|gb|EAW75996.1| topoisomerase (DNA) I, isoform CRA_b [Homo sapiens]
Length = 768
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 247 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 306
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 307 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 366
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 367 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 426
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 427 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 486
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 487 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 546
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 547 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 606
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 607 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 666
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 667 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 726
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 727 LDPRITVAWCKKW 739
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 413 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 472
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 473 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 522
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 745 KIYNKTQREKFAWAIDMADEDYEF 768
>gi|410953858|ref|XP_003983587.1| PREDICTED: DNA topoisomerase 1 [Felis catus]
Length = 1370
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/498 (70%), Positives = 411/498 (82%), Gaps = 7/498 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 849 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 908
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 909 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHRERIANFKIEPPGLFRG 968
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PP GHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 969 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPTGHKWKEVRHDNKVTWLVSWTENIQGS 1028
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 1029 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 1088
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 1089 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 1148
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 1149 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 1208
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 1209 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 1268
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 1269 DLKSAKADAKVLKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 1328
Query: 478 LDPRISVTWLASWTENVQ 495
LDPRI+V W W ++
Sbjct: 1329 LDPRITVAWCKKWGVPIE 1346
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 1015 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 1074
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 1075 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 1124
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 1347 KIYNKTQREKFAWAIDMADEDYEF 1370
>gi|350594934|ref|XP_003134489.3| PREDICTED: DNA topoisomerase 1 [Sus scrofa]
Length = 809
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 288 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 347
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 348 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHRERIANFKIEPPGLFRG 407
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 408 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 467
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 468 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 527
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 528 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 587
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 588 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 647
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 648 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 707
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 708 DLKSAKADAKVLKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 767
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 768 LDPRITVAWCKKW 780
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 454 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 513
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 514 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 563
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 786 KIYNKTQREKFAWAIDMADEDYEF 809
>gi|395505408|ref|XP_003757034.1| PREDICTED: DNA topoisomerase 1 [Sarcophilus harrisii]
Length = 1055
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/493 (72%), Positives = 409/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTK+ F NF KDWRK MT +E+ IT LSKCDF
Sbjct: 534 GKVMKLSPKAEEVATFFAKMLDHEYTTKDIFRKNFFKDWRKEMTNEEKNNITSLSKCDFN 593
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 594 QISQYFKAQSEARKQMSKEEKLKIKEENERLLKEYGFCVMDNHRERIANFKIEPPGLFRG 653
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKDSKVPPPPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 654 RGNHPKMGMLKRRIMPEDIIINCSKDSKVPPPPPGHKWKEVRHDNKVTWLVSWTENIQGS 713
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 714 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 773
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 774 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPEMDGQEYVVEFDFLGKDSIRYYNKVPV 833
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 834 EKRVFKNLQLFMENKQPEDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 893
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 894 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMLNLQTKIDAKKDQLADARR 953
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K +SK + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 954 DLKRAKAEAKVRKDVKSKKVVETKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 1013
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 1014 LDPRISVAWCKKW 1026
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 700 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 759
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 760 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPEMD 809
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 1032 KIYNKTQREKFAWAIDMADKDYEF 1055
>gi|15723144|emb|CAA23015.1| topoisomerase I alpha [Takifugu rubripes]
Length = 767
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/489 (71%), Positives = 409/489 (83%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKL+ AEE+ATF+A+M++HEYTTK+ F NF KDWRK MT +E++ ITDL+KC+F
Sbjct: 246 GKLMKLAAPAEEVATFFAKMLDHEYTTKDVFRKNFFKDWRKEMTSEEKSKITDLNKCNFA 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M+ YF +SE RK MSKEEK+KIK++NE I +EYG C +D HKE+IGNFRIEPPGLFRG
Sbjct: 306 GMNDYFKAQSEARKQMSKEEKQKIKEDNERILQEYGFCIMDNHKERIGNFRIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR++ EDIIINCSKDSK P PPPG KWKEVRHDN+VTWLASWTEN+QG
Sbjct: 366 RGDHPKMGMLKRRIRPEDIIINCSKDSKHPKPPPGTKWKEVRHDNKVTWLASWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRNQYREDWKSKEMRIRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI L+ + D + YVV FDFLGKDSIRYYN +PV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLYPKLDDQEYVVEFDFLGKDSIRYYNRIPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL ELM+GLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFLENKQPGDDLFDRLNTSILNKHLQELMDGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL D S KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+KQ+ A +
Sbjct: 606 ELSCSDDSVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMQNLQTKIDEKQKQLSAARK 665
Query: 424 ALKDAK---KAG---ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK KA +SK + K+ A+ R++EQL+KL+VQ TD+EENK IALGTSKLNY
Sbjct: 666 QLKAAKAEHKASHDDKSKKAVEVKRKAVQRIEEQLMKLQVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTW 486
LDPRISV W
Sbjct: 726 LDPRISVAW 734
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/112 (76%), Positives = 101/112 (90%), Gaps = 1/112 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLASWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKE
Sbjct: 412 VTWLASWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDEK 594
MRIRQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI L+ + D++
Sbjct: 472 MRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLYPKLDDQ 523
Score = 43.9 bits (102), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA DF F
Sbjct: 744 KIYNKTQREKFAWAIDMAEKDFEF 767
>gi|330417918|ref|NP_001193416.1| DNA topoisomerase 1 [Bos taurus]
gi|296480941|tpg|DAA23056.1| TPA: topoisomerase (DNA) I [Bos taurus]
Length = 769
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 248 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 307
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 308 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 367
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 368 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 427
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 428 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 487
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 488 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 547
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 548 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 607
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 608 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 667
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 668 DLKSAKADAKVLKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 727
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 728 LDPRITVAWCKKW 740
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 414 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 473
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 474 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 523
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 746 KIYNKTQREKFAWAIDMADEDYEF 769
>gi|440910957|gb|ELR60692.1| DNA topoisomerase 1, partial [Bos grunniens mutus]
Length = 750
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 229 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 288
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 289 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 348
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 349 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 408
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 409 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 468
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 469 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 528
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 529 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 588
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 589 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 648
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 649 DLKSAKADAKVLKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 708
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 709 LDPRITVAWCKKW 721
Score = 189 bits (479), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 395 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 454
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 455 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 504
Score = 42.0 bits (97), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 727 KIYNKTQREKFAWAIDMADEDYEF 750
>gi|195356202|ref|XP_002044569.1| GM19769 [Drosophila sechellia]
gi|194132200|gb|EDW53822.1| GM19769 [Drosophila sechellia]
Length = 970
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/482 (72%), Positives = 397/482 (82%), Gaps = 9/482 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS++ EE ATFYA+M+ H+Y TKE FN NF KD+RKSMT +ER +I D KC F+
Sbjct: 465 GKPLELSEETEEAATFYAKMLNHDYCTKEVFNNNFFKDFRKSMTPREREIIKDFRKCGFQ 524
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE+RKA SKEEK K+ENEA+ KE+G C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 525 EMFNYFQAESEKRKAASKEEKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRG 584
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+ A D+ INC KDSKVP PPPG +WKEVRHDN VTWLASW ENVQGQ
Sbjct: 585 RGEHPKMGMIKRRIHASDVSINCGKDSKVPSPPPGSRWKEVRHDNTVTWLASWIENVQGQ 644
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 645 VKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFID 704
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E +GK VV FDF GKDSIRYYNEV VE
Sbjct: 705 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVE 764
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+E+KK DDLFDRLNT VLN+HL ELMEGLTAKVFRTYNAS TLQ QL+
Sbjct: 765 KRVFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDL 824
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP + EK+LAYNRANRAVA+LCNHQRSVPKSH+KSM NLKEKI KR+ ++ E
Sbjct: 825 LTDPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAIEKCE-- 882
Query: 425 LKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
E + +KK L RL++QL KLE+QETD++ENKTIALGTSKLNYLDPRISV
Sbjct: 883 -------SEYNSRDEKKGKQLDRLRDQLKKLELQETDRDENKTIALGTSKLNYLDPRISV 935
Query: 485 TW 486
W
Sbjct: 936 AW 937
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 100/108 (92%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW ENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 630 TVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSK 689
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E
Sbjct: 690 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKE 737
>gi|338719276|ref|XP_001500244.3| PREDICTED: DNA topoisomerase 1-like [Equus caballus]
Length = 732
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 409/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT LSKCDF
Sbjct: 211 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITSLSKCDFT 270
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 271 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 330
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 331 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 390
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 391 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 450
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 451 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 510
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 511 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 570
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 571 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 630
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 631 DLKSAKADAKVLKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 690
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 691 LDPRITVAWCKKW 703
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 377 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 436
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 437 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 486
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 709 KIYNKTQREKFAWAIDMADEDYEF 732
>gi|348510309|ref|XP_003442688.1| PREDICTED: DNA topoisomerase 1-like [Oreochromis niloticus]
Length = 754
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/493 (72%), Positives = 412/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS +AEE+ATF+A+M++HEYTTK+ F NF KDWRK MT +ERA ITDL KCDF
Sbjct: 233 GKHMKLSPEAEEVATFFAKMLDHEYTTKDIFRKNFFKDWRKEMTSEERAKITDLKKCDFT 292
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RKAMSKEEK+KIK+ENE I ++YG C +D HKE+I NFRIEPPGLFRG
Sbjct: 293 EMSEYFKAQSEARKAMSKEEKQKIKEENERILQQYGFCIMDNHKERIANFRIEPPGLFRG 352
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR++ +DIIINCSKDSKVP PPPG KWKEVRHDN+VTWL SWTEN+QG
Sbjct: 353 RGDHPKMGMLKRRIRPQDIIINCSKDSKVPEPPPGTKWKEVRHDNKVTWLVSWTENIQGS 412
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 413 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRAQYREDWKSKEMRIRQRAVALYFID 472
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E +G+ YVV FDFLGKDSIRYYN VPV
Sbjct: 473 KLALRAGNEKEEGETADTVGCCSLRVEHIKLYPENEGQEYVVEFDFLGKDSIRYYNRVPV 532
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL ELM+GLTAKVFRTYNASITLQQQL
Sbjct: 533 EKRVFKNLQLFMENKEPDDDLFDRLNTSILNKHLQELMDGLTAKVFRTYNASITLQQQLK 592
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL + + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI KR Q+ DA+R
Sbjct: 593 ELTTAEENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMQNLQSKIDAKRDQLADAKR 652
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K +SK + KK A+ R++EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 653 ELKSAKADAKVRKDEKSKKAVESKKKAVQRIEEQLMKLEVQATDREENKQIALGTSKLNY 712
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 713 LDPRISVAWCKKW 725
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 98/108 (90%), Gaps = 1/108 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKE
Sbjct: 399 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRAQYREDWKSKE 458
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEE 590
MRIRQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E
Sbjct: 459 MRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLYPE 506
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 731 KIYNKTQREKFAWAIDMAEEDYEF 754
>gi|157838061|pdb|1A35|A Chain A, Human Topoisomerase IDNA COMPLEX
gi|157838062|pdb|1A36|A Chain A, Topoisomerase IDNA COMPLEX
Length = 591
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 70 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 129
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 130 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 189
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 190 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 249
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 250 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 309
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 310 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 369
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 370 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 429
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 430 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 489
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLN+
Sbjct: 490 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNF 549
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 550 LDPRITVAWCKKW 562
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 236 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 295
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 296 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 345
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 568 KIYNKTQREKFAWAIDMADEDYEF 591
>gi|223460080|gb|AAI36298.1| Topoisomerase (DNA) I [Homo sapiens]
Length = 765
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 244 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 303
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 304 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 363
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 364 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 423
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 424 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 483
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 484 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 543
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRT+NASITLQQQL
Sbjct: 544 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTHNASITLQQQLK 603
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 604 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 663
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 664 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 723
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 724 LDPRITVAWCKKW 736
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 410 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 469
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 470 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 519
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 742 KIYNKTQREKFAWAIDMADEDYEF 765
>gi|24642138|ref|NP_727841.1| topoisomerase 1, isoform B [Drosophila melanogaster]
gi|22833158|gb|AAN09660.1| topoisomerase 1, isoform B [Drosophila melanogaster]
Length = 581
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/482 (72%), Positives = 399/482 (82%), Gaps = 9/482 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS++ EE ATFYA+M+ H+Y TKE FN NF KD+RKSMT +ER +I D KC+F+
Sbjct: 76 GKPLELSEETEEAATFYAKMLNHDYCTKEVFNNNFFKDFRKSMTPREREIIKDFRKCNFQ 135
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE+RKA SKEEK K+ENEA+ KE+G C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 136 EMFNYFQAESEKRKAASKEEKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRG 195
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+QA D+ INC KDSKVP PPPG +WKEVRHDN VTWLASW ENVQGQ
Sbjct: 196 RGEHPKMGMIKRRIQASDVSINCGKDSKVPSPPPGSRWKEVRHDNTVTWLASWIENVQGQ 255
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 256 VKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFID 315
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E +GK VV FDF GKDSIRYYNEV VE
Sbjct: 316 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVE 375
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+E+KK DDLFDRLNT VLN+HL ELMEGLTAKVFRTYNAS TLQ QL+
Sbjct: 376 KRVFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDL 435
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP + EK+LAYNRANRAVA+LCNHQRSVPKSH+KSM NLKEKI KR+ ++ E
Sbjct: 436 LTDPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAIEKCE-- 493
Query: 425 LKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
E + +KK L RL++QL KLE+QETD++ENKTIALGTSKLNYLDPRISV
Sbjct: 494 -------SEYHSRDEKKGKQLERLRDQLKKLELQETDRDENKTIALGTSKLNYLDPRISV 546
Query: 485 TW 486
W
Sbjct: 547 AW 548
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 100/108 (92%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW ENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 241 TVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSK 300
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E
Sbjct: 301 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKE 348
>gi|344236993|gb|EGV93096.1| DNA topoisomerase 1 [Cricetulus griseus]
Length = 715
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 407/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT E+ VIT+LSKCDF
Sbjct: 194 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNVITNLSKCDFT 253
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 254 QMSQYFKDQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 313
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 314 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 373
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 374 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 433
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDF GKDSIRYYN+VPV
Sbjct: 434 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPV 493
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 494 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 553
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 554 ELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARR 613
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 614 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 673
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 674 LDPRITVAWCKKW 686
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 360 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 419
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 420 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 469
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDM D+ F
Sbjct: 692 KIYNKTQREKFAWAIDMTDEDYEF 715
>gi|297079|emb|CAA79748.1| DNA topoisomerase I [Cricetulus griseus]
Length = 767
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 407/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT E+ VIT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNVITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKDQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDF GKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 606 ELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDM D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMTDEDYEF 767
>gi|348564020|ref|XP_003467804.1| PREDICTED: DNA topoisomerase 1-like [Cavia porcellus]
Length = 760
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 408/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEEIATF+A+M++HEYTTKE F NF KDWRK MT +E+ IT+LSKCDF
Sbjct: 239 GKVMKLSPKAEEIATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNTITNLSKCDFT 298
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 299 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 358
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 359 RGNHPKMGMLKRRILPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 418
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 419 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 478
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 479 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 538
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 539 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 598
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 599 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARR 658
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK +ALGTSKLNY
Sbjct: 659 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQVALGTSKLNY 718
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 719 LDPRITVAWCKKW 731
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 405 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 464
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 465 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 514
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KI+NKTQR KF WAIDMA D+ F
Sbjct: 737 KIFNKTQREKFAWAIDMADEDYEF 760
>gi|195132412|ref|XP_002010637.1| GI21653 [Drosophila mojavensis]
gi|193907425|gb|EDW06292.1| GI21653 [Drosophila mojavensis]
Length = 1043
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/491 (71%), Positives = 401/491 (81%), Gaps = 5/491 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK M+LS++ EE ATFYA+M+ H+Y TK+ FN NF KD+RK+MT KE+ +I D KC+F+
Sbjct: 524 GKPMELSEETEEAATFYAKMLNHDYCTKDVFNNNFFKDFRKTMTPKEKEIIKDFRKCNFQ 583
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE+RKA +KEEK K E+EA+ KEYG C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 584 EMFEYFQAESEKRKAATKEEKLAKKVESEALIKEYGFCMIDGHKEKIGNFRLEPPGLFRG 643
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+ A D+ INC K+SKVP PPPG +WKEVRHDN VTWLASWTENVQGQ
Sbjct: 644 RGEHPKMGMIKRRIAARDVSINCGKNSKVPQPPPGERWKEVRHDNTVTWLASWTENVQGQ 703
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 704 VKYIMLNPSSKLKGEKDHIKYETARRLDKFIDKIRATYRDEWKSKEMRVRQRAVALYFID 763
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E + K VV FDF GKDSIRYYNEV VE
Sbjct: 764 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNNKENVVVFDFPGKDSIRYYNEVEVE 823
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+ENKK DDLFDRLNT VLN+HL ELMEGLTAKVFRTYNAS TLQ QL+
Sbjct: 824 KRVFKNLELFMENKKDGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQNQLDL 883
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP+ S AEK+L YNRANRAVA+LCNHQRSVPK H KSM NLKEKI KR + + E
Sbjct: 884 LTDPNASVAEKLLTYNRANRAVAILCNHQRSVPKGHQKSMENLKEKIRAKRDALDECESE 943
Query: 425 LKDAKKAGESKAM-----TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
D +KA + ++ DKK L RLK+QL KLE+QETD++ENKTIALGTSKLNYLD
Sbjct: 944 YHDLRKAAKRGSVKEKLNADKKGKQLERLKDQLKKLELQETDRDENKTIALGTSKLNYLD 1003
Query: 480 PRISVTWLASW 490
PRI+V W +
Sbjct: 1004 PRITVAWCKKY 1014
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 94/112 (83%), Positives = 103/112 (91%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 689 TVTWLASWTENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKFIDKIRATYRDEWKSK 748
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E + K
Sbjct: 749 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNNK 800
>gi|23200355|pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 43 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 102
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 103 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 162
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 163 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 222
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 223 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 282
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 283 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 342
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 343 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 402
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 403 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 462
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLN+
Sbjct: 463 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNF 522
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 523 LDPRITVAWCKKW 535
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 209 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 268
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 269 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 318
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 541 KIYNKTQREKFAWAIDMADEDYEF 564
>gi|345790055|ref|XP_534420.3| PREDICTED: DNA topoisomerase 1 [Canis lupus familiaris]
Length = 770
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 409/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 249 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 308
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 309 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 368
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PP GHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 369 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPTGHKWKEVRHDNKVTWLVSWTENIQGS 428
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 429 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 488
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 489 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 548
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 549 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 608
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 609 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 668
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 669 DLKSAKADAKVLKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 728
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 729 LDPRITVAWCKKW 741
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 415 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 474
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 475 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 524
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 747 KIYNKTQREKFAWAIDMADEDYEF 770
>gi|40889577|pdb|1R49|A Chain A, Human Topoisomerase I (Topo70) Double Mutant K532rY723F
Length = 592
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 71 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 130
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 131 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 190
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 191 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 250
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 251 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 310
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLG+DSIRYYN+VPV
Sbjct: 311 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGRDSIRYYNKVPV 370
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 371 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 430
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 431 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 490
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLN+
Sbjct: 491 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNF 550
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 551 LDPRITVAWCKKW 563
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 237 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 296
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 297 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 346
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 569 KIYNKTQREKFAWAIDMADEDYEF 592
>gi|351715322|gb|EHB18241.1| DNA topoisomerase 1, partial [Heterocephalus glaber]
Length = 749
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 408/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEEIATF+A+M++HEYTTKE F NF KDWRK MT +E++ IT+LSKCDF
Sbjct: 228 GKVMKLSSKAEEIATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKSTITNLSKCDFT 287
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 288 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHRERIANFKIEPPGLFRG 347
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 348 RGNHPKMGMLKRRILPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 407
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 408 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 467
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDF GKDSIRYYN+VPV
Sbjct: 468 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPV 527
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 528 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 587
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 588 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARR 647
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 648 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 707
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 708 LDPRITVAWCKKW 720
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 394 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 453
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 454 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 503
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 726 KIYNKTQREKFAWAIDMADEDYEF 749
>gi|355725604|gb|AES08609.1| topoisomerase I [Mustela putorius furo]
Length = 699
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 409/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 179 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 238
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 239 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHRERIANFKIEPPGLFRG 298
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PP GHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 299 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPTGHKWKEVRHDNKVTWLVSWTENIQGS 358
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 359 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 418
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 419 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 478
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 479 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 538
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 539 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 598
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 599 DLKSAKADAKVLKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 658
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 659 LDPRITVAWCKKW 671
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 345 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 404
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 405 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 454
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 595 KIYNKTQRAKFRWAIDMATADF 616
KIYNKTQR KF WAIDMA D+
Sbjct: 677 KIYNKTQREKFAWAIDMADEDY 698
>gi|344279640|ref|XP_003411595.1| PREDICTED: DNA topoisomerase 1-like [Loxodonta africana]
Length = 1085
Score = 716 bits (1849), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/498 (70%), Positives = 410/498 (82%), Gaps = 7/498 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ VIT LSKCDF
Sbjct: 564 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNVITSLSKCDFA 623
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 624 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 683
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 684 RGNHPKMGMLKRRILPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 743
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 744 IKYIMLNPSSRIKGEKDWQKYETARRLKNCVDKIRNQYREDWKSKEMKVRQRAVALYFID 803
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 804 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 863
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 864 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 923
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 924 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 983
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 984 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 1043
Query: 478 LDPRISVTWLASWTENVQ 495
LDPRISV W W ++
Sbjct: 1044 LDPRISVAWCKKWGVPIE 1061
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/110 (77%), Positives = 97/110 (88%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L ++KIR Y+ DWKSKE
Sbjct: 730 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKNCVDKIRNQYREDWKSKE 789
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 790 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 839
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA DF F
Sbjct: 1062 KIYNKTQREKFAWAIDMADEDFEF 1085
>gi|27065157|pdb|1K4S|A Chain A, Human Dna Topoisomerase I In Covalent Complex With A 22
Base Pair Dna Duplex
gi|27065161|pdb|1K4T|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Poison Topotecan And Covalent Complex With A 22 Base
Pair Dna Duplex
gi|66360101|pdb|1SC7|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indenoisoquinoline Mj-Ii-38 And Covalent Complex With A
22 Base Pair Dna Duplex
gi|67463659|pdb|1T8I|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Poison Camptothecin And Covalent Complex With A 22 Base
Pair Dna Duplex
gi|71041604|pdb|1TL8|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indenoisoquinoline Ai-Iii-52 And Covalent Complex With A
22 Base Pair Dna Duplex
Length = 592
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 409/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 71 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 130
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 131 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 190
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 191 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 250
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 251 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 310
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 311 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 370
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 371 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 430
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 431 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 490
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLN
Sbjct: 491 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNX 550
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 551 LDPRITVAWCKKW 563
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 237 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 296
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 297 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 346
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 569 KIYNKTQREKFAWAIDMADEDYEF 592
>gi|157838059|pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 591
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 409/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 70 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 129
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 130 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 189
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 190 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 249
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 250 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 309
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 310 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 369
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 370 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 429
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 430 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 489
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLN
Sbjct: 490 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNX 549
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 550 LDPRITVAWCKKW 562
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 236 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 295
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 296 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 345
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 568 KIYNKTQREKFAWAIDMADEDYEF 591
>gi|473583|gb|AAB60380.1| DNA topoisomerase I, partial [Homo sapiens]
Length = 761
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/493 (71%), Positives = 409/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 240 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 299
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 300 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 359
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPK G LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 360 RGNHPKTGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 419
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 420 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 479
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 480 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 539
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 540 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 599
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 600 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 659
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKL+Y
Sbjct: 660 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLSY 719
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 720 LDPRITVAWCKKW 732
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 406 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 465
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 466 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 515
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 738 KIYNKTQREKFAWAIDMADEDYEF 761
>gi|195478784|ref|XP_002100651.1| GE17178 [Drosophila yakuba]
gi|194188175|gb|EDX01759.1| GE17178 [Drosophila yakuba]
Length = 580
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/482 (72%), Positives = 397/482 (82%), Gaps = 9/482 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS++ EE ATFYA+M+ H+Y TKE FN NF KD+RKSMT KER +I D KC F+
Sbjct: 75 GKPLELSEETEEAATFYAKMLNHDYCTKEVFNNNFFKDFRKSMTSKEREIIKDFRKCGFQ 134
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M +F +SE+RKA +KEEK K+ENEA+ KE+G C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 135 EMFNFFQAESEKRKAATKEEKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRG 194
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+QA D+ INC K+SKVP PPPG +WKEVRHDN VTWLASW ENVQGQ
Sbjct: 195 RGEHPKMGMIKRRIQASDVSINCGKESKVPSPPPGSRWKEVRHDNTVTWLASWIENVQGQ 254
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 255 VKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFID 314
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E +GK VV FDF GKDSIRYYNEV VE
Sbjct: 315 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVE 374
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+E+KK DDLFDRLNT VLN+HL ELMEGLTAKVFRTYNAS TLQ QL+
Sbjct: 375 KRVFKNLELFMEHKKDGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDL 434
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP + EK+LAYNRANRAVA+LCNHQRSVPKSH+KSM NLKEKI KR+ + E
Sbjct: 435 LTDPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAINKCE-- 492
Query: 425 LKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
E + +KK L RLK+QL KLE+QETD++ENKTIALGTSKLNYLDPRISV
Sbjct: 493 -------AEYHSRDEKKGKQLERLKDQLKKLELQETDRDENKTIALGTSKLNYLDPRISV 545
Query: 485 TW 486
W
Sbjct: 546 AW 547
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 100/108 (92%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW ENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 240 TVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSK 299
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E
Sbjct: 300 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKE 347
>gi|112734855|ref|NP_033434.2| DNA topoisomerase 1 [Mus musculus]
gi|158518540|sp|Q04750.2|TOP1_MOUSE RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|123235350|emb|CAM20297.1| topoisomerase (DNA) I [Mus musculus]
gi|123239880|emb|CAM25349.1| topoisomerase (DNA) I [Mus musculus]
gi|148674342|gb|EDL06289.1| topoisomerase (DNA) I [Mus musculus]
gi|162319568|gb|AAI56380.1| Topoisomerase (DNA) I [synthetic construct]
gi|225000592|gb|AAI72687.1| Topoisomerase (DNA) I [synthetic construct]
Length = 767
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 406/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT E+ IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNTITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDF GKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 606 ELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDM D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMTDEDYEF 767
>gi|301766206|ref|XP_002918524.1| PREDICTED: DNA topoisomerase 1-like [Ailuropoda melanoleuca]
Length = 882
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/493 (71%), Positives = 409/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 361 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 420
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 421 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHRERIANFKIEPPGLFRG 480
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PP GHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 481 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPTGHKWKEVRHDNKVTWLVSWTENIQGS 540
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 541 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 600
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 601 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 660
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 661 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 720
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 721 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 780
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 781 DLKSAKADAKVLKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 840
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 841 LDPRITVAWCKKW 853
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 527 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 586
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 587 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 636
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 859 KIYNKTQREKFAWAIDMADEDYEF 882
>gi|28948850|pdb|1NH3|A Chain A, Human Topoisomerase I Ara-C Complex
Length = 563
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 409/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 42 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 101
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 102 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 161
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 162 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 221
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 222 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 281
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 282 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 341
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 342 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 401
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 402 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 461
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLN
Sbjct: 462 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNX 521
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 522 LDPRITVAWCKKW 534
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 208 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 267
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 268 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 317
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 540 KIYNKTQREKFAWAIDMADEDYEF 563
>gi|345842372|ref|NP_001230963.1| DNA topoisomerase 1 [Cricetulus griseus]
gi|586107|sp|Q07050.1|TOP1_CRIGR RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|297077|emb|CAA79747.1| DNA topoisomerase I [Cricetulus griseus]
Length = 767
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 406/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT E+ VIT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNVITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKDQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTV CCSLRVEHI LH E DG+ YVV FDF GKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVSCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 606 ELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/110 (77%), Positives = 97/110 (88%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTV CCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVSCCSLRVEHINLHPELD 521
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDM D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMTDEDYEF 767
>gi|255982630|gb|ACU45746.1| AT12251p [Drosophila melanogaster]
Length = 581
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/482 (72%), Positives = 398/482 (82%), Gaps = 9/482 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS++ EE ATFYA+M+ H+Y TKE FN NF KD+RKSMT +ER +I D KC+F+
Sbjct: 76 GKPLELSEETEEAATFYAKMLNHDYCTKEVFNNNFFKDFRKSMTPREREIIKDFRKCNFQ 135
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE+RKA SKEEK K+ENEA+ KE+G C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 136 EMFNYFQAESEKRKAASKEEKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRG 195
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+QA D+ INC KDSKVP PPPG +WKEVRHDN VTWLASW ENVQGQ
Sbjct: 196 RGEHPKMGMIKRRIQASDVSINCGKDSKVPSPPPGSRWKEVRHDNTVTWLASWIENVQGQ 255
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 256 VKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFID 315
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E +GK VV FDF GKDSIRYYNEV VE
Sbjct: 316 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVE 375
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+E+KK DDLFDRL T VLN+HL ELMEGLTAKVFRTYNAS TLQ QL+
Sbjct: 376 KRVFKNLELFMEHKKEGDDLFDRLKTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDL 435
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP + EK+LAYNRANRAVA+LCNHQRSVPKSH+KSM NLKEKI KR+ ++ E
Sbjct: 436 LTDPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAIEKCE-- 493
Query: 425 LKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
E + +KK L RL++QL KLE+QETD++ENKTIALGTSKLNYLDPRISV
Sbjct: 494 -------SEYHSRDEKKGKQLERLRDQLKKLELQETDRDENKTIALGTSKLNYLDPRISV 546
Query: 485 TW 486
W
Sbjct: 547 AW 548
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 100/108 (92%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW ENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 241 TVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSK 300
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E
Sbjct: 301 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKE 348
>gi|281352816|gb|EFB28400.1| hypothetical protein PANDA_006987 [Ailuropoda melanoleuca]
Length = 560
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/493 (71%), Positives = 409/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 39 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 98
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 99 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHRERIANFKIEPPGLFRG 158
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PP GHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 159 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPTGHKWKEVRHDNKVTWLVSWTENIQGS 218
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 219 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 278
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 279 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 338
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 339 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 398
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 399 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 458
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 459 DLKSAKADAKVLKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 518
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 519 LDPRITVAWCKKW 531
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 205 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 264
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 265 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 314
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 537 KIYNKTQREKFAWAIDMADEDYEF 560
>gi|66360105|pdb|1SEU|A Chain A, Human Dna Topoisomerase I (70 Kda) In Complex With The
Indolocarbazole Sa315f And Covalent Complex With A 22
Base Pair Dna Duplex
Length = 592
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/493 (71%), Positives = 409/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 71 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 130
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 131 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 190
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 191 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 250
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 251 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 310
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 311 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 370
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 371 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 430
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 431 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 490
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKL+
Sbjct: 491 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLSX 550
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 551 LDPRITVAWCKKW 563
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 237 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 296
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 297 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 346
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 569 KIYNKTQREKFAWAIDMADEDYEF 592
>gi|12018294|ref|NP_072137.1| DNA topoisomerase 1 [Rattus norvegicus]
gi|51316560|sp|Q9WUL0.1|TOP1_RAT RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|4809197|gb|AAD30137.1|AF140782_1 DNA topoisomerase I [Rattus norvegicus]
gi|149043044|gb|EDL96618.1| topoisomerase (DNA) I [Rattus norvegicus]
Length = 767
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/493 (71%), Positives = 406/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT E+ IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNTITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDF GKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA +
Sbjct: 606 ELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARK 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDM D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMTDEDYEF 767
>gi|9954905|pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/493 (71%), Positives = 409/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 42 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 101
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 102 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 161
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 162 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 221
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 222 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 281
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 282 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 341
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 342 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 401
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQ + PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 402 ELTAPDENIPAKILSYNRANRAVAILCNHQIAPPKTFEKSMMNLQTKIDAKKEQLADARR 461
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLN+
Sbjct: 462 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNF 521
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 522 LDPRITVAWCKKW 534
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 208 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 267
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 268 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 317
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 540 KIYNKTQREKFAWAIDMADEDYEF 563
>gi|355563133|gb|EHH19695.1| DNA topoisomerase 1 [Macaca mulatta]
gi|355784486|gb|EHH65337.1| DNA topoisomerase 1 [Macaca fascicularis]
Length = 786
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/508 (70%), Positives = 409/508 (80%), Gaps = 23/508 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 251 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 310
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 311 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 370
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 371 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 430
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 431 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 490
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 491 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 550
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 551 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 610
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 611 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 670
Query: 424 ALKDAKK---------------------AGESKAMTDKKKTALGRLKEQLLKLEVQETDK 462
LK AK AG K + KKK A+ RL+EQL+KLEVQ TD+
Sbjct: 671 DLKSAKADAKVMKDAKTKKYVPGIVKVGAGGEKVVESKKK-AVQRLEEQLMKLEVQATDR 729
Query: 463 EENKTIALGTSKLNYLDPRISVTWLASW 490
EENK IALGTSKLNYLDPRI+V W W
Sbjct: 730 EENKQIALGTSKLNYLDPRITVAWCKKW 757
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 417 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 476
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 477 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 526
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 763 KIYNKTQREKFAWAIDMADEDYEF 786
>gi|50513401|pdb|1RRJ|A Chain A, Structural Mechanisms Of Camptothecin Resistance By
Mutations In Human Topoisomerase I
Length = 565
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/493 (71%), Positives = 409/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 44 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 103
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 104 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 163
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 164 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 223
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 224 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 283
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 284 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 343
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 344 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 403
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 404 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 463
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKL+
Sbjct: 464 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLSX 523
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 524 LDPRITVAWCKKW 536
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 210 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 269
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 270 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 319
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 542 KIYNKTQREKFAWAIDMADEDYEF 565
>gi|220618|dbj|BAA00950.1| DNA topoisomerase I [Mus musculus]
Length = 767
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/493 (71%), Positives = 405/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT + IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDGKNTITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDF GKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 606 ELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDM D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMTDEDYEF 767
>gi|291409626|ref|XP_002721120.1| PREDICTED: DNA topoisomerase I [Oryctolagus cuniculus]
Length = 762
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/493 (70%), Positives = 408/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS AEE+ATF+A+M++HEYTT E F NF KDWRK MT +E+ IT+LSKCDF
Sbjct: 241 GKVVKLSPKAEEVATFFAKMLDHEYTTNEIFRKNFFKDWRKEMTNEEKNTITNLSKCDFT 300
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF +SE RK +SKEEK+KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 301 HMSQYFKAQSEARKQLSKEEKQKIKEENEKVLKEYGFCIMDNHRERIANFKIEPPGLFRG 360
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKDSKVP PPPGHKWKEVRHDN+VTWL SWT+N+QG
Sbjct: 361 RGNHPKMGMLKRRIMPEDIIINCSKDSKVPSPPPGHKWKEVRHDNKVTWLVSWTQNIQGS 420
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 421 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 480
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 481 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 540
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 541 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 600
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 601 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 660
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 661 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 720
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 721 LDPRITVAWCKKW 733
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/110 (77%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWT+N+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 407 VTWLVSWTQNIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 466
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 467 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 516
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 739 KIYNKTQREKFAWAIDMADEDYEF 762
>gi|195045561|ref|XP_001991997.1| GH24453 [Drosophila grimshawi]
gi|193892838|gb|EDV91704.1| GH24453 [Drosophila grimshawi]
Length = 1063
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/487 (71%), Positives = 397/487 (81%), Gaps = 5/487 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS++ EE ATFYA+M+ H+Y TK+ FNTNF KD+RK+MT KE+ +I D KC+F+
Sbjct: 544 GKPLELSEETEEAATFYAKMLNHDYCTKDVFNTNFFKDFRKTMTVKEKEIIKDFRKCNFQ 603
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M +F +SE+RKA +KEEK K+ENEA+ KEYG C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 604 EMFQFFQAESEKRKAATKEEKLLKKNENEALVKEYGFCMIDGHKEKIGNFRLEPPGLFRG 663
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+ A D+ INC K SKVP PP G +WKEVRHDN VTWLASWTENVQGQ
Sbjct: 664 RGEHPKMGMIKRRIAAADVSINCGKQSKVPQPPMGGRWKEVRHDNTVTWLASWTENVQGQ 723
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 724 VKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFID 783
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E + K VV FDF GKDSIRYYNEV VE
Sbjct: 784 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNCKENVVVFDFPGKDSIRYYNEVEVE 843
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+ENKK DDLFDRLNT VLN+HL ELMEGLTAKVFRTYNAS TLQ QL+
Sbjct: 844 KRVFKNLELFMENKKEGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDL 903
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L D + AEK+LAYNRANRAVA+LCNHQRSVPK H KSM NLKEKI KR + D E
Sbjct: 904 LTDGSATVAEKLLAYNRANRAVAILCNHQRSVPKGHQKSMDNLKEKIRAKRDNIDDCEAE 963
Query: 425 LKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
D KKA + K DKK L RLK+QL KLE+QETD++ENKTIAL TSKLNYLD
Sbjct: 964 YHDLKKAAKRGSVKEKVNADKKAKQLERLKDQLKKLELQETDRDENKTIALSTSKLNYLD 1023
Query: 480 PRISVTW 486
PRISV W
Sbjct: 1024 PRISVAW 1030
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 93/108 (86%), Positives = 101/108 (93%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 709 TVTWLASWTENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSK 768
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E
Sbjct: 769 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKE 816
>gi|395829416|ref|XP_003787855.1| PREDICTED: DNA topoisomerase 1 [Otolemur garnettii]
Length = 1006
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/493 (70%), Positives = 407/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 485 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 544
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK M+KEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 545 QMSQYFKAQSEARKQMNKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 604
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 605 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 664
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYE AR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 665 IKYIMLNPSSRIKGEKDWQKYEIARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 724
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDF GKDSIRYYN+VPV
Sbjct: 725 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPV 784
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 785 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 844
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 845 ELTVPDENTPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 904
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEV TD+EENK IALGTSKLNY
Sbjct: 905 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVLATDREENKQIALGTSKLNY 964
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 965 LDPRITVAWCKKW 977
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/110 (77%), Positives = 97/110 (88%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYE AR+L K ++KIR Y+ DWKSKE
Sbjct: 651 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYEIARRLKKCVDKIRNQYREDWKSKE 710
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 711 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 760
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA DF F
Sbjct: 983 KIYNKTQREKFAWAIDMADEDFEF 1006
>gi|291226061|ref|XP_002733015.1| PREDICTED: DNA topoisomerase I-like [Saccoglossus kowalevskii]
Length = 843
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/495 (68%), Positives = 404/495 (81%), Gaps = 11/495 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++L + AEE+A FYA+M+EH+YT+KE FN NF +DWRK MT E+A+ITDLSKCDFR
Sbjct: 322 GKHVQLEEAAEEVAGFYAKMLEHDYTSKEIFNKNFFRDWRKEMTHDEKALITDLSKCDFR 381
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ AY+ KSEERK M+K EK++IK +N+A+T EYG C IDGHK+KIGNFRIEPPGLFRG
Sbjct: 382 EIGAYYKMKSEERKNMTKAEKEEIKKQNQALTDEYGFCIIDGHKQKIGNFRIEPPGLFRG 441
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPK G LK+R+Q E +IINCSKD + P PP GH+WK+V HDN+VTWL SWTEN+QG
Sbjct: 442 RGDHPKQGMLKKRIQPETVIINCSKDVETPKPPEGHRWKQVLHDNKVTWLCSWTENIQGA 501
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLN +S+LKGEKDWQKYE AR+L + KIR NY+ DW+SKEMRIRQRAVA+YFID
Sbjct: 502 IKYIMLNANSRLKGEKDWQKYEMARQLKTVVEKIRANYREDWRSKEMRIRQRAVAMYFID 561
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E +GK +V FDFLGKDSIRY N+VPV
Sbjct: 562 KLALRAGNEKEEGETADTVGCCSLRVEHIKLYPELNGKEFVAEFDFLGKDSIRYLNQVPV 621
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRV+KNLQLF++NK DD+FDRLNTS+LNKHL ELMEGLTAKVFRT+NAS TLQ QLN
Sbjct: 622 EKRVYKNLQLFMDNKSPGDDVFDRLNTSILNKHLQELMEGLTAKVFRTFNASKTLQDQLN 681
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL +PD S KIL+YNRANRAVAVLCNHQR++PK+ DK M N++EKI K +KDA++
Sbjct: 682 ELTNPDDSVTAKILSYNRANRAVAVLCNHQRAIPKTFDKQMLNMQEKIKKKNDTIKDAKK 741
Query: 424 ALKDAKKAGESKAMTD--------KKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
K K GE K+ D +KK L RL+EQL+KLEVQ TDKEENK IALGTSKL
Sbjct: 742 DYKKLK--GEYKSSRDDRLKSALERKKKQLERLEEQLMKLEVQATDKEENKDIALGTSKL 799
Query: 476 NYLDPRISVTWLASW 490
NYLDPRISV W W
Sbjct: 800 NYLDPRISVAWCKKW 814
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 95/108 (87%), Gaps = 1/108 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLN +S+LKGEKDWQKYE AR+L + KIR NY+ DW+SKE
Sbjct: 488 VTWLCSWTENIQGAIKYIMLNANSRLKGEKDWQKYEMARQLKTVVEKIRANYREDWRSKE 547
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEE 590
MRIRQRAVA+YFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E
Sbjct: 548 MRIRQRAVAMYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLYPE 595
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYN+TQR KF+WAIDMA + F
Sbjct: 820 KIYNRTQREKFQWAIDMADETYEF 843
>gi|334311332|ref|XP_001381657.2| PREDICTED: DNA topoisomerase 1-like [Monodelphis domestica]
Length = 924
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/495 (71%), Positives = 406/495 (82%), Gaps = 11/495 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTK+ F NF KDWRK MT +E+ IT+LSKCDF
Sbjct: 403 GKVMKLSPKAEEVATFFAKMLDHEYTTKDIFRKNFFKDWRKEMTNEEKNSITNLSKCDFN 462
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 463 QISQYFKAQSEARKQMSKEEKLKIKEENERLLKEYGFCVMDNHRERIANFKIEPPGLFRG 522
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVPPPPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 523 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPPPPPGHKWKEVRHDNKVTWLVSWTENIQGS 582
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 583 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 642
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 643 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPEMDGQEYVVEFDFLGKDSIRYYNKVPV 702
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 703 EKRVFKNLQLFMENKQPEDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 762
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 763 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKDQLADARR 822
Query: 424 ALKDAKKAGESKAMTDKKKTALG--------RLKEQLLKLEVQETDKEENKTIALGTSKL 475
LK AK E+K D K + RL+EQL+KLEVQ TD+EENK IALGTSKL
Sbjct: 823 DLKSAK--AEAKVRKDVKTKKVVETKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKL 880
Query: 476 NYLDPRISVTWLASW 490
NYLDPRISV W W
Sbjct: 881 NYLDPRISVAWCKKW 895
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 569 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 628
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 629 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPEMD 678
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 901 KIYNKTQREKFAWAIDMADKDYEF 924
>gi|50513398|pdb|1RR8|C Chain C, Structural Mechanisms Of Camptothecin Resistance By
Mutations In Human Topoisomerase I
Length = 565
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/493 (70%), Positives = 408/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 44 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 103
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGL RG
Sbjct: 104 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLSRG 163
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 164 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 223
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 224 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 283
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 284 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 343
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 344 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 403
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQ++ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 404 ELTAPDENIPAKILSYNRANRAVAILCNHQQAPPKTFEKSMMNLQTKIDAKKEQLADARR 463
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLN
Sbjct: 464 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNX 523
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 524 LDPRITVAWCKKW 536
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 210 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 269
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 270 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 319
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 542 KIYNKTQREKFAWAIDMADEDYEF 565
>gi|147900774|ref|NP_001084031.1| DNA topoisomerase 1 [Xenopus laevis]
gi|1174739|sp|P41512.1|TOP1_XENLA RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|214834|gb|AAB36608.1| DNA topoisomerase I [Xenopus laevis]
Length = 829
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/493 (68%), Positives = 403/493 (81%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G +KLS AEE+ATF+A+M++HEYTTK+ F NF KDW+K MT ER +IT+LSKCDF
Sbjct: 300 GNLVKLSPKAEEVATFFAKMLDHEYTTKDIFRKNFFKDWKKEMTTDERNLITNLSKCDFN 359
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF ++SE RK M+KEEK KIK ENE + +EYG C +D HKE+I NFRIEPPGLFRG
Sbjct: 360 AMSLYFKEQSEARKNMTKEEKLKIKAENERLLQEYGYCIMDNHKERIANFRIEPPGLFRG 419
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMGKLK+R+ EDIIINCSKDSK+P P GHKWKEVRHD +VTWL SWTEN+QG
Sbjct: 420 RGDHPKMGKLKKRIMPEDIIINCSKDSKIPVAPAGHKWKEVRHDGKVTWLVSWTENIQGS 479
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L + KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 480 IKYIMLNPSSRIKGEKDWQKYETARRLKMCVEKIRNTYKEDWKSKEMKVRQRAVALYFID 539
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI L +E DG+ +VV FDF GKDSIRYYN+VPV
Sbjct: 540 KLALRAGNEKEEGETADTVGCCSLRVEHINLFQELDGQEFVVEFDFPGKDSIRYYNKVPV 599
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL +LMEGLTAKVFRTYNASITLQQQL+
Sbjct: 600 EKRVFKNLQLFMENKQPDDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLD 659
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL + D + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 660 ELTNSDDNVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQGKIDAKKDQLADARR 719
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
K AK + ++K + + KK A+ R++EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 720 EFKSAKADAKVRRDEKTKKLVESKKKAVQRIEEQLMKLEVQATDREENKQIALGTSKLNY 779
Query: 478 LDPRISVTWLASW 490
LDPRISV W +
Sbjct: 780 LDPRISVAWCKKY 792
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 100/191 (52%), Positives = 126/191 (65%), Gaps = 16/191 (8%)
Query: 404 MGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQ-ETDK 462
M N KE+I+N R + R D K +G+LK++++ ++ K
Sbjct: 399 MDNHKERIANFRIEPPGLFRGRGDHPK--------------MGKLKKRIMPEDIIINCSK 444
Query: 463 EENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETAR 522
+ +A K + VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR
Sbjct: 445 DSKIPVAPAGHKWKEVRHDGKVTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETAR 504
Query: 523 KLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLR 581
+L + KIR Y+ DWKSKEM++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLR
Sbjct: 505 RLKMCVEKIRNTYKEDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLR 564
Query: 582 VEHIQLHEEKD 592
VEHI L +E D
Sbjct: 565 VEHINLFQELD 575
>gi|432859495|ref|XP_004069135.1| PREDICTED: DNA topoisomerase 1-like [Oryzias latipes]
Length = 750
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/493 (70%), Positives = 411/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK M+LS +AEE+ATF+A+M++HEYTTK+ F NF KDWRK MT +E+A ITDL KC+F
Sbjct: 229 GKPMRLSPEAEEVATFFAKMLDHEYTTKDIFRKNFFKDWRKEMTAEEKATITDLKKCNFT 288
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RKAMSKEEK+KIK+ENE + ++YG C +D HKE+I NFRIEPPGLFRG
Sbjct: 289 EMSEYFKAQSEARKAMSKEEKQKIKEENERLLQKYGYCIMDNHKERIANFRIEPPGLFRG 348
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR++ EDIIINCSKDSK P PPPG KWKEVRHDN+VTWL SWTEN+QG
Sbjct: 349 RGDHPKMGMLKRRIRPEDIIINCSKDSKCPEPPPGTKWKEVRHDNKVTWLVSWTENIQGS 408
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKEMR+RQRAVALYFID
Sbjct: 409 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRAQYREDWKSKEMRVRQRAVALYFID 468
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI L+ E +G+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 469 KLALRAGNEKEEGETADTVGCCSLRVEHINLYPENEGQEYVVEFDFLGKDSIRYYNKVPV 528
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL ELM+GLTAKVFRTYNASITLQQQL
Sbjct: 529 EKRVFKNLQLFMENKEPDDDLFDRLNTSILNKHLQELMDGLTAKVFRTYNASITLQQQLK 588
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL D + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA+R
Sbjct: 589 ELTTADENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMQNLQAKIDAKKDQLSDAKR 648
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + K+ A+ R++EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 649 ELKSAKADAKVRKDEKTKKAVESKRKAVQRIEEQLMKLEVQATDREENKQIALGTSKLNY 708
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 709 LDPRISVAWCKKW 721
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/108 (77%), Positives = 97/108 (89%), Gaps = 1/108 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKE
Sbjct: 395 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRAQYREDWKSKE 454
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEE 590
MR+RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI L+ E
Sbjct: 455 MRVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLYPE 502
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 727 KIYNKTQREKFAWAIDMADEDYEF 750
>gi|348503053|ref|XP_003439081.1| PREDICTED: DNA topoisomerase 1-like isoform 2 [Oreochromis
niloticus]
Length = 769
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/489 (71%), Positives = 412/489 (84%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTK+ F NF KDWRK MT +E++VITDL+KCDF
Sbjct: 248 GKPMKLSASAEEVATFFAKMLDHEYTTKDIFRKNFFKDWRKEMTSEEKSVITDLNKCDFS 307
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK+KIK+ENE + +EYG C +D HKE+IGNFRIEPPGLFRG
Sbjct: 308 EMSEYFKAQSEARKQMSKEEKQKIKEENERLLQEYGFCIMDNHKERIGNFRIEPPGLFRG 367
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR++ EDIIINCSKDSK P PPPG KWKEVRHDN+VTWLASWTEN+QG
Sbjct: 368 RGDHPKMGMLKRRIRPEDIIINCSKDSKHPKPPPGTKWKEVRHDNKVTWLASWTENIQGS 427
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 428 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRAQYREDWKSKEMRIRQRAVALYFID 487
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+L+ + D + YVV FDFLGKDSIRYYN++PV
Sbjct: 488 KLALRAGNEKEEGETADTVGCCSLRVEHIKLYPKLDDQEYVVEFDFLGKDSIRYYNKIPV 547
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL ELM+GLTAKVFRTYNASITLQQQL
Sbjct: 548 EKRVFKNLQLFLENKQPEDDLFDRLNTSILNKHLQELMDGLTAKVFRTYNASITLQQQLK 607
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD S KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ A +
Sbjct: 608 ELTCPDDSIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMQNLQNKIDEKQTQLSAARK 667
Query: 424 ALKDAK---KAG---ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK KA +SK + K+ A+ R++EQL+KL+VQ TD+EENK IALGTSKLNY
Sbjct: 668 QLKAAKADHKASHDDKSKKAVEVKRKAVQRIEEQLMKLQVQATDREENKQIALGTSKLNY 727
Query: 478 LDPRISVTW 486
LDPRISV W
Sbjct: 728 LDPRISVAW 736
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/112 (76%), Positives = 102/112 (91%), Gaps = 1/112 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLASWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKE
Sbjct: 414 VTWLASWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRAQYREDWKSKE 473
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDEK 594
MRIRQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+L+ + D++
Sbjct: 474 MRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLYPKLDDQ 525
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 746 KIYNKTQREKFAWAIDMADKDYEF 769
>gi|348503051|ref|XP_003439080.1| PREDICTED: DNA topoisomerase 1-like isoform 1 [Oreochromis
niloticus]
Length = 759
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/489 (71%), Positives = 412/489 (84%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTK+ F NF KDWRK MT +E++VITDL+KCDF
Sbjct: 238 GKPMKLSASAEEVATFFAKMLDHEYTTKDIFRKNFFKDWRKEMTSEEKSVITDLNKCDFS 297
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK+KIK+ENE + +EYG C +D HKE+IGNFRIEPPGLFRG
Sbjct: 298 EMSEYFKAQSEARKQMSKEEKQKIKEENERLLQEYGFCIMDNHKERIGNFRIEPPGLFRG 357
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR++ EDIIINCSKDSK P PPPG KWKEVRHDN+VTWLASWTEN+QG
Sbjct: 358 RGDHPKMGMLKRRIRPEDIIINCSKDSKHPKPPPGTKWKEVRHDNKVTWLASWTENIQGS 417
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 418 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRAQYREDWKSKEMRIRQRAVALYFID 477
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+L+ + D + YVV FDFLGKDSIRYYN++PV
Sbjct: 478 KLALRAGNEKEEGETADTVGCCSLRVEHIKLYPKLDDQEYVVEFDFLGKDSIRYYNKIPV 537
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL ELM+GLTAKVFRTYNASITLQQQL
Sbjct: 538 EKRVFKNLQLFLENKQPEDDLFDRLNTSILNKHLQELMDGLTAKVFRTYNASITLQQQLK 597
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD S KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ A +
Sbjct: 598 ELTCPDDSIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMQNLQNKIDEKQTQLSAARK 657
Query: 424 ALKDAK---KAG---ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK KA +SK + K+ A+ R++EQL+KL+VQ TD+EENK IALGTSKLNY
Sbjct: 658 QLKAAKADHKASHDDKSKKAVEVKRKAVQRIEEQLMKLQVQATDREENKQIALGTSKLNY 717
Query: 478 LDPRISVTW 486
LDPRISV W
Sbjct: 718 LDPRISVAW 726
Score = 188 bits (477), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/112 (76%), Positives = 102/112 (91%), Gaps = 1/112 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLASWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKE
Sbjct: 404 VTWLASWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRAQYREDWKSKE 463
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDEK 594
MRIRQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+L+ + D++
Sbjct: 464 MRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLYPKLDDQ 515
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 736 KIYNKTQREKFAWAIDMADKDYEF 759
>gi|309523|gb|AAA40466.1| DNA topoisomerase I [Mus musculus]
Length = 766
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/493 (70%), Positives = 404/493 (81%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT E+ IT+LSKCDF
Sbjct: 245 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFWKNFFKDWRKEMTNDEKNTITNLSKCDFT 304
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 305 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 364
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 365 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 424
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 425 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 484
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E D + YVV FDF KDSIRYYN+VPV
Sbjct: 485 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDVQEYVVEFDFPWKDSIRYYNKVPV 544
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 545 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 604
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 605 ELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARR 664
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 665 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 724
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 725 LDPRITVAWCKKW 737
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 411 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 470
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 471 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 520
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDM D+ F
Sbjct: 743 KIYNKTQREKFAWAIDMTYEDYEF 766
>gi|427788599|gb|JAA59751.1| Putative dna topoisomerase i [Rhipicephalus pulchellus]
Length = 967
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/493 (68%), Positives = 403/493 (81%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G +KLS +AEE+A FY RM++H+YT+K+ FN NF DWRK MT KE +ITDL KC+F+
Sbjct: 446 GVPVKLSPEAEEVAGFYGRMLDHDYTSKDVFNKNFFHDWRKCMTSKEAELITDLKKCNFK 505
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ AY+ KSEERKAM+KEEK+ IK +NE + +EYG C IDGHK+KIGNF+IEPPGLFRG
Sbjct: 506 EIDAYYKMKSEERKAMTKEEKQAIKLQNEKLVEEYGFCIIDGHKQKIGNFKIEPPGLFRG 565
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG LKRR+ ED+IIN K++KVP PPPGHKWKEVRHD+ V+WL+SWTEN+ GQ
Sbjct: 566 RGEHPKMGMLKRRIMPEDVIINIGKEAKVPDPPPGHKWKEVRHDDNVSWLSSWTENILGQ 625
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYIMLNPSSKLKGEKD QKYE ARKL ++KIR+NY DWKSKEMRIRQR+VALYFID
Sbjct: 626 TKYIMLNPSSKLKGEKDMQKYEMARKLKSCVDKIRQNYMNDWKSKEMRIRQRSVALYFID 685
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH+EKDGK +VV FDFLGKDSIRY N VPV
Sbjct: 686 KLALRAGNEKEEGETADTVGCCSLRVEHITLHDEKDGKEFVVEFDFLGKDSIRYVNAVPV 745
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNL+LF+ENKK DDLFDRLNTS+LNKHL+ELMEGLTAKVFRTYNAS TLQ+QL
Sbjct: 746 EKRVFKNLKLFMENKKPQDDLFDRLNTSILNKHLNELMEGLTAKVFRTYNASKTLQEQLE 805
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + D S EK+LAYNRANRAVA+LCNHQR+VPK+ K M NL++K+ K +Q++ +
Sbjct: 806 LLTEADMSLPEKMLAYNRANRAVAILCNHQRAVPKTFGKQMENLQKKMEEKEEQIRQCKM 865
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
+K K ++ + K + ++KK L +L++Q+ KLEVQ DKEENK IALGTSKLNY
Sbjct: 866 EVKQLKSDYHNSRSEKDKQLLERKKKRLQQLEDQMKKLEVQAMDKEENKQIALGTSKLNY 925
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 926 LDPRISVAWCKKW 938
Score = 188 bits (477), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 89/115 (77%), Positives = 101/115 (87%), Gaps = 1/115 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V+WL+SWTEN+ GQ KYIMLNPSSKLKGEKD QKYE ARKL ++KIR+NY DWKSK
Sbjct: 611 NVSWLSSWTENILGQTKYIMLNPSSKLKGEKDMQKYEMARKLKSCVDKIRQNYMNDWKSK 670
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDEKKI 596
EMRIRQR+VALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH+EKD K+
Sbjct: 671 EMRIRQRSVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHITLHDEKDGKEF 725
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAI+MA D+ F
Sbjct: 944 KIYNKTQRDKFRWAIEMAGPDYKF 967
>gi|292626781|ref|XP_002666448.1| PREDICTED: DNA topoisomerase 1 [Danio rerio]
Length = 748
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/497 (70%), Positives = 406/497 (81%), Gaps = 15/497 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G MKLS AEE+ATFYA+M+EHEYTT E F NF KDWRK MT +E++ IT+L KCDF
Sbjct: 227 GNAMKLSPAAEEVATFYAKMLEHEYTTNEIFRKNFFKDWRKEMTSEEKSKITELKKCDFT 286
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF +SE RK MSKEEK+K K+ENE I +EYG C +D H+E+IGNFRIEPPGLFRG
Sbjct: 287 QMHEYFKAQSEARKQMSKEEKQKNKEENERILQEYGFCLMDNHRERIGNFRIEPPGLFRG 346
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMGKLKRR++ EDIIINCSKDS P PPG +WKEVRHDN+VTWL SWTEN+QG
Sbjct: 347 RGDHPKMGKLKRRIRPEDIIINCSKDSVQPKAPPGTRWKEVRHDNKVTWLVSWTENIQGS 406
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K + +IR Y+ DW+SKEMRIRQRAVALYFID
Sbjct: 407 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVERIRAQYREDWRSKEMRIRQRAVALYFID 466
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEKDE + ADTVGCCSLRVEHI+LH + DG+ YVV FDFLGKDSIRYYN++PV
Sbjct: 467 KLALRAGNEKDEGETADTVGCCSLRVEHIKLHPQLDGQDYVVEFDFLGKDSIRYYNKIPV 526
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNK+L ELM+GLTAKVFRTYNASITLQQQLN
Sbjct: 527 EKRVFKNLQLFLENKQSEDDLFDRLNTSILNKYLQELMDGLTAKVFRTYNASITLQQQLN 586
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV----- 418
EL P + EKIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+KQ+
Sbjct: 587 ELTSPGENIPEKILSYNRANRAVALLCNHQRAPPKTFEKSMQNLQTKIDEKKKQLSAAKK 646
Query: 419 -----KDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTS 473
K +AL D K SK + KK A+ R+ EQL+KLEVQ TD+EENK IALGTS
Sbjct: 647 EHKAAKADAKALHDEK----SKKAVETKKKAVQRISEQLMKLEVQATDREENKQIALGTS 702
Query: 474 KLNYLDPRISVTWLASW 490
KLNYLDPRISV+W W
Sbjct: 703 KLNYLDPRISVSWCKKW 719
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K + +IR Y+ DW+SKE
Sbjct: 393 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVERIRAQYREDWRSKE 452
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
MRIRQRAVALYFIDKLALRAGNEKDE + ADTVGCCSLRVEHI+LH + D
Sbjct: 453 MRIRQRAVALYFIDKLALRAGNEKDEGETADTVGCCSLRVEHIKLHPQLD 502
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIY+KTQR KF WAIDMA DF F
Sbjct: 725 KIYSKTQRDKFAWAIDMADEDFEF 748
>gi|113195566|ref|NP_001037789.1| topoisomerase (DNA) I, like [Danio rerio]
gi|108742084|gb|AAI17589.1| Topoisomerase (DNA) I, like [Danio rerio]
Length = 758
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/491 (70%), Positives = 412/491 (83%), Gaps = 11/491 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS +AEE+ATF+++M++HEYTTK+ F NF KDWRK MT +E++ ITDL+KCDF
Sbjct: 237 GKHMKLSPNAEEVATFFSKMLDHEYTTKDIFRKNFFKDWRKEMTSEEKSKITDLNKCDFS 296
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF +SE RKAM+KEEK KIK+ENE I +EYG C +D HKE+I NFRIEPPGLFRG
Sbjct: 297 NMSEYFKAQSEARKAMTKEEKLKIKEENERILQEYGFCIMDNHKERIANFRIEPPGLFRG 356
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR++ EDIIINCSKDSK P PPPG KWKEVRHDN+VTWL SWTEN+QG
Sbjct: 357 RGDHPKMGMLKRRIRPEDIIINCSKDSKHPTPPPGTKWKEVRHDNKVTWLVSWTENIQGS 416
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKEM+IRQRAVALYFID
Sbjct: 417 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRSQYRDDWKSKEMKIRQRAVALYFID 476
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEH+ LH E DG+ +VV FDFLGKDSIRYYN+VPV
Sbjct: 477 KLALRAGNEKEEGETADTVGCCSLRVEHLTLHPEMDGQEFVVEFDFLGKDSIRYYNKVPV 536
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+E+K+ DDLFDRLNTS+LNKHL ELM+GLTAKVFRTYNASITLQQQLN
Sbjct: 537 EKRVFKNLQLFMEDKEPEDDLFDRLNTSILNKHLQELMDGLTAKVFRTYNASITLQQQLN 596
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL + + + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ +A+R
Sbjct: 597 ELTNSEDNVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMQNLQTKIDAKKEQLVEAKR 656
Query: 424 ALKDAKKAGESKAMTDK--------KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
LK AK ++K D+ KK AL R++EQL+KLEVQ TD+EENK IALGTSKL
Sbjct: 657 ELKGAK--ADAKVRKDEKFKKAVEAKKKALQRVEEQLMKLEVQATDREENKQIALGTSKL 714
Query: 476 NYLDPRISVTW 486
NYLDPRISV W
Sbjct: 715 NYLDPRISVAW 725
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/110 (77%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKE
Sbjct: 403 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRSQYRDDWKSKE 462
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M+IRQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEH+ LH E D
Sbjct: 463 MKIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHLTLHPEMD 512
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 735 KIYNKTQREKFAWAIDMAEKDYEF 758
>gi|443706334|gb|ELU02442.1| hypothetical protein CAPTEDRAFT_173543 [Capitella teleta]
Length = 757
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/488 (69%), Positives = 397/488 (81%), Gaps = 6/488 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS +AEE+A FY RMI+H+YTT+E FN NF+KDWRK M KE+ ++ DL KC+F
Sbjct: 237 GKPVKLSPEAEEVAVFYGRMIDHDYTTQEVFNDNFLKDWRKVMNSKEKELLRDLRKCNFN 296
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+++ YF KSEERKAMSKE K +IK +NE I K+YG C ID H++KIGNFRIEPPGLFRG
Sbjct: 297 EINDYFKLKSEERKAMSKEGKLEIKKQNEEIVKQYGFCVIDHHRQKIGNFRIEPPGLFRG 356
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPK G LK+R+ ED+IINCSKDS +P PPPGHKWKEVRHDN VTWL SWTEN+QG
Sbjct: 357 RGDHPKRGMLKKRIMPEDVIINCSKDSPIPKPPPGHKWKEVRHDNTVTWLCSWTENIQGS 416
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+MLN +SKLKGEKD+ KYETARKL K ++KIR Y+ DWKSKEMRIRQRAVA+YFID
Sbjct: 417 IKYVMLNAASKLKGEKDFNKYETARKLYKCVDKIRAQYREDWKSKEMRIRQRAVAMYFID 476
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDED ADTVGCCS+RVEHI+LHE+ D K YVV FDFLGKDSIRYYN V VE
Sbjct: 477 KLALRAGNEKDEDTADTVGCCSIRVEHIKLHEKLDDKEYVVEFDFLGKDSIRYYNRVAVE 536
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNLQ+F+ENK DDLFDRLNT++LNKHL LMEGLTAKVFRT+NAS TLQ+QL
Sbjct: 537 KRVFKNLQIFMENKSPGDDLFDRLNTAILNKHLQSLMEGLTAKVFRTFNASRTLQEQLKL 596
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L D D + K+L+YNRANRAVA+LCNHQR+VPK+ + M NL+ KI KR VKDA+R
Sbjct: 597 LTDEDDNVPGKMLSYNRANRAVAILCNHQRAVPKNFSQQMENLQGKIDAKRDAVKDAKRD 656
Query: 425 LKDAK---KAGES---KAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
K +K KA S + +KKK AL R +E L KLEVQ+TDK+ENK IALGTSKLNYL
Sbjct: 657 YKASKADYKASRSITNQKNVEKKKKALDRAQEMLHKLEVQQTDKDENKEIALGTSKLNYL 716
Query: 479 DPRISVTW 486
DPRISV W
Sbjct: 717 DPRISVAW 724
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/112 (77%), Positives = 101/112 (90%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWTEN+QG +KY+MLN +SKLKGEKD+ KYETARKL K ++KIR Y+ DWKSK
Sbjct: 402 TVTWLCSWTENIQGSIKYVMLNAASKLKGEKDFNKYETARKLYKCVDKIRAQYREDWKSK 461
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVA+YFIDKLALRAGNEKDED ADTVGCCS+RVEHI+LHE+ D+K
Sbjct: 462 EMRIRQRAVAMYFIDKLALRAGNEKDEDTADTVGCCSIRVEHIKLHEKLDDK 513
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 734 KIYNKTQREKFAWAIDMAEEDYEF 757
>gi|432865646|ref|XP_004070544.1| PREDICTED: DNA topoisomerase 1-like [Oryzias latipes]
Length = 765
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/493 (70%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTK+ F NF KDWRK MT +E+++ITDL KCDF
Sbjct: 244 GKPMKLSAPAEEVATFFAKMLDHEYTTKDIFRKNFYKDWRKEMTSEEKSIITDLKKCDFS 303
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M+ YF +SE RK MSKEEK+KIK+ENE + EYG C +D H+E+IGNFRIEPPGLFRG
Sbjct: 304 EMNEYFKAQSEARKQMSKEEKQKIKEENERLLSEYGFCIMDNHRERIGNFRIEPPGLFRG 363
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR++ ED+IINCSKDSK P PPPG KWKEVRHDN+VTWLASWTEN+QG
Sbjct: 364 RGDHPKMGMLKRRIRPEDVIINCSKDSKHPKPPPGTKWKEVRHDNKVTWLASWTENIQGS 423
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 424 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRTQYREDWKSKEMRIRQRAVALYFID 483
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+L + D + YVV FDFLGKDSIRYYN++PV
Sbjct: 484 KLALRAGNEKEEGETADTVGCCSLRVEHIKLFPKMDEQEYVVEFDFLGKDSIRYYNKIPV 543
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL ELM+GLTAKVFRTYNASITLQQQL
Sbjct: 544 EKRVFKNLQLFLENKQPEDDLFDRLNTSILNKHLQELMDGLTAKVFRTYNASITLQQQLK 603
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL D S K+L+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ A +
Sbjct: 604 ELTCCDDSIPAKLLSYNRANRAVAILCNHQRAPPKTFEKSMQNLQTKIDEKQNQLSAARK 663
Query: 424 ALKDAK---KAG---ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK KA +SK + K+ A+ R++EQL+KL++Q TD+EENK IALGTSKLNY
Sbjct: 664 QLKAAKANHKASHDDKSKKAVEVKRKAVQRIEEQLMKLQMQATDREENKQIALGTSKLNY 723
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 724 LDPRISVAWCKKW 736
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 87/112 (77%), Positives = 101/112 (90%), Gaps = 1/112 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLASWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKE
Sbjct: 410 VTWLASWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRTQYREDWKSKE 469
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDEK 594
MRIRQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+L + DE+
Sbjct: 470 MRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLFPKMDEQ 521
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 742 KIYNKTQREKFAWAIDMAEKDYEF 765
>gi|405964124|gb|EKC29641.1| DNA topoisomerase 1 [Crassostrea gigas]
Length = 938
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/493 (68%), Positives = 400/493 (81%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS+ AEE+ATFYARM++H+YTTK+ FN NF KDW+K MT ER +I DL KC+F+
Sbjct: 417 GKVVKLSEPAEEVATFYARMLDHDYTTKDVFNNNFTKDWKKMMTTSERELIRDLKKCNFK 476
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF KSEERK SKEEKK K N+ I KEYG C +DGHKEKIGNF+IEPPGLFRG
Sbjct: 477 EMAEYFKLKSEERKNRSKEEKKAEKLNNDEIQKEYGFCLMDGHKEKIGNFKIEPPGLFRG 536
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPK G LKRR Q ED+IINCSK +KVP PPPGHKWKEVRHDN+V+WLA W EN+QG
Sbjct: 537 RGDHPKQGMLKRRTQPEDVIINCSKTAKVPSPPPGHKWKEVRHDNKVSWLACWNENIQGS 596
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+MLN +S+LKGEKDWQKYETAR+L K ++KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 597 TKYVMLNAASRLKGEKDWQKYETARRLHKCVDKIRAQYREDWKSKEMRIRQRAVALYFID 656
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLR EH+ LHE+ + + YVV FDFLGKDSIRYYN +PV
Sbjct: 657 KLALRAGNEKEEGETADTVGCCSLRKEHLTLHEKYEDQEYVVEFDFLGKDSIRYYNRMPV 716
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF++NK G DD+FDRLNT++LNKHL ELM+GLTAKVFRTYNAS TLQ+QLN
Sbjct: 717 EKRVFKNLQLFMDNKAGEDDVFDRLNTTILNKHLHELMDGLTAKVFRTYNASRTLQEQLN 776
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + D + K+L+YNRANRAVAVLCNHQR+ PK+ K M NL+ KI +K+ +K+A++
Sbjct: 777 LLTEADDNVPSKLLSYNRANRAVAVLCNHQRAAPKNFSKQMENLQNKIDDKKAAIKEAKK 836
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
+KDAK K ++K K+KT RL+EQL KLEVQ TDKEENK IALGTSKLNY
Sbjct: 837 NVKDAKADYKATKTEKAKQALTKRKTQQQRLEEQLTKLEVQATDKEENKEIALGTSKLNY 896
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 897 LDPRISVAWCKKW 909
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/107 (75%), Positives = 93/107 (86%), Gaps = 1/107 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
V+WLA W EN+QG KY+MLN +S+LKGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 583 VSWLACWNENIQGSTKYVMLNAASRLKGEKDWQKYETARRLHKCVDKIRAQYREDWKSKE 642
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHE 589
MRIRQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLR EH+ LHE
Sbjct: 643 MRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRKEHLTLHE 689
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA ADF F
Sbjct: 915 KIYNKTQREKFRWAIDMAEADFEF 938
>gi|339254408|ref|XP_003372427.1| DNA topoisomerase 1 [Trichinella spiralis]
gi|316967142|gb|EFV51618.1| DNA topoisomerase 1 [Trichinella spiralis]
Length = 560
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/493 (69%), Positives = 403/493 (81%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS+ AEE+ATFY++M++HEYTTK+ FNTNF DWRK M KER +ITDLS+C+FR
Sbjct: 39 GKPMKLSEGAEEVATFYSKMLDHEYTTKDVFNTNFFHDWRKMMNPKEREIITDLSRCNFR 98
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M+ YF +KSEERKA+SK+EKKK+KDE EA YG +DGHKEKIGN++IEPPGLFRG
Sbjct: 99 EMNEYFTKKSEERKALSKDEKKKLKDEQEAQRLIYGYAVVDGHKEKIGNYKIEPPGLFRG 158
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG+LKRR+Q ED+IINCSKD+KVP PPPGH WKEVR+DN VTWLASWTEN+ G
Sbjct: 159 RGTHPKMGRLKRRIQPEDVIINCSKDAKVPEPPPGHSWKEVRYDNTVTWLASWTENIMGS 218
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+MLNPSSK+KGEKDW+KYETARKL + KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 219 NKYVMLNPSSKIKGEKDWEKYETARKLKDVVEKIRSEYRNDWKSKEMKVRQRAVALYFID 278
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK D + ADTVGCCSLR EHI+LH+E DG+ VV FDFLGKDSIRYYN VPV
Sbjct: 279 KLALRAGNEKEDNETADTVGCCSLRCEHIKLHKELDGQQNVVEFDFLGKDSIRYYNRVPV 338
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
E RVFKNL++F+E+K DDLFDRLNT+ LNKHL LM GLTAKVFRTYNASITLQQQL
Sbjct: 339 ESRVFKNLRIFMEHKSPDDDLFDRLNTATLNKHLQNLMPGLTAKVFRTYNASITLQQQLE 398
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L D + AE++LAYNRANR VA+LCNHQRSVPK+H K M N+++KI K KQ+K+ ++
Sbjct: 399 LLTKGDTNTAERLLAYNRANRQVAILCNHQRSVPKTHGKQMENIQKKIEEKEKQIKEMKK 458
Query: 424 ALKDAKK------AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
+K AK ++K + ++KK L R +EQLLKL+V+ TDKEENK IAL TSKLNY
Sbjct: 459 MVKSAKAEHNASGTAKTKKVLEQKKKNLHRSEEQLLKLKVRATDKEENKEIALSTSKLNY 518
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 519 LDPRISVAWCKKW 531
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/111 (75%), Positives = 96/111 (86%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+ G KY+MLNPSSK+KGEKDW+KYETARKL + KIR Y+ DWKSK
Sbjct: 204 TVTWLASWTENIMGSNKYVMLNPSSKIKGEKDWEKYETARKLKDVVEKIRSEYRNDWKSK 263
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM++RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLR EHI+LH+E D
Sbjct: 264 EMKVRQRAVALYFIDKLALRAGNEKEDNETADTVGCCSLRCEHIKLHKELD 314
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYN+TQR KFRWAIDMA +FVF
Sbjct: 537 KIYNRTQREKFRWAIDMAGPEFVF 560
>gi|410920491|ref|XP_003973717.1| PREDICTED: DNA topoisomerase 1-like [Takifugu rubripes]
gi|15723146|emb|CAA23016.1| topoisomerase I beta [Takifugu rubripes]
Length = 753
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/495 (69%), Positives = 402/495 (81%), Gaps = 11/495 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK L AEE+ATF+A+M++HEYTTK+ F NF KDWRK MT +E+A ITDL KCDF
Sbjct: 232 GKAFMLRAGAEEVATFFAKMLDHEYTTKDVFRKNFFKDWRKEMTSEEKAKITDLKKCDFS 291
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF +SE RKAM+KEEK KIK+ENE + ++YG C +D HKE+I NFRIEPPGLFRG
Sbjct: 292 EMHQYFKAQSEARKAMTKEEKLKIKEENERLLQQYGFCIMDNHKERIANFRIEPPGLFRG 351
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR++ +DIIINCSKDSK P PPPG KWKEVRHDN+VTWL SWTEN+QG
Sbjct: 352 RGDHPKMGMLKRRIRPQDIIINCSKDSKYPEPPPGTKWKEVRHDNKVTWLVSWTENIQGS 411
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 412 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRNQYREDWKSKEMRIRQRAVALYFID 471
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 472 KLALRAGNEKEEGETADTVGCCSLRVEHIKLYPEIDGQEYVVEFDFLGKDSIRYYNKVPV 531
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL ELM+GLTAKVFRTYNASITLQ QL
Sbjct: 532 EKRVFKNLQLFMENKEPDDDLFDRLNTSILNKHLQELMDGLTAKVFRTYNASITLQAQLK 591
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL + + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ A+R
Sbjct: 592 ELTSAEENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMQNLQTKIDAKKAQLSAAKR 651
Query: 424 ALKDAKKAGESKAMTDKKKTALG--------RLKEQLLKLEVQETDKEENKTIALGTSKL 475
LK AK ++K D+K R+ +QL+KLEVQ TD+EENK IALGTSKL
Sbjct: 652 ELKSAK--ADAKVRRDEKSKKAVEAKKKAVQRIDDQLMKLEVQATDREENKQIALGTSKL 709
Query: 476 NYLDPRISVTWLASW 490
NYLDPRISV W W
Sbjct: 710 NYLDPRISVAWCKKW 724
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 99/110 (90%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKE
Sbjct: 398 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRNQYREDWKSKE 457
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
MRIRQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E D
Sbjct: 458 MRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLYPEID 507
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 730 KIYNKTQREKFAWAIDMAEDDYEF 753
>gi|301606601|ref|XP_002932918.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase 1-like [Xenopus
(Silurana) tropicalis]
Length = 850
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/493 (69%), Positives = 404/493 (81%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G +KLS AEE+ATF+A+M++HEYTTK+ F NF KDW+K MT ER +IT+L KCDF
Sbjct: 290 GNLVKLSPKAEEVATFFAKMLDHEYTTKDIFRKNFFKDWKKEMTADERNLITNLGKCDFN 349
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF ++SE RK M+KEEK+KIK+ENE + +EYG C +D H+E+I NFRIEPPGLFRG
Sbjct: 350 AMSQYFKEQSEARKNMTKEEKQKIKEENERLLQEYGFCVMDNHRERIANFRIEPPGLFRG 409
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMGKLK+R+ EDIIINCSKDSK P P GHKWKEVRHD +VTWL SWTEN+QG
Sbjct: 410 RGDHPKMGKLKKRIMPEDIIINCSKDSKYPVAPAGHKWKEVRHDGKVTWLVSWTENIQGS 469
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L + KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 470 IKYIMLNPSSRIKGEKDWQKYETARRLKMCVEKIRNTYKEDWKSKEMKVRQRAVALYFID 529
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI L +E DG+ +VV FDF GKDSIRYYN+VPV
Sbjct: 530 KLALRAGNEKEEGETADTVGCCSLRVEHINLFQELDGQEFVVEFDFPGKDSIRYYNKVPV 589
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL +LMEGLTAKVFRTYNASITLQQQLN
Sbjct: 590 EKRVFKNLQLFMENKQPDDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLN 649
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL + D + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 650 ELTNGDDNVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQGKIDAKKDQLMDARR 709
Query: 424 ALKDA------KKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK A K+ +SK + + KK A+ R++EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 710 ELKSAKADAKVKRDEKSKKLVESKKKAVQRVEEQLMKLEVQATDREENKQIALGTSKLNY 769
Query: 478 LDPRISVTWLASW 490
LDPRISV W +
Sbjct: 770 LDPRISVAWCKKY 782
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 126/191 (65%), Gaps = 16/191 (8%)
Query: 404 MGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQ-ETDK 462
M N +E+I+N R + R D K +G+LK++++ ++ K
Sbjct: 389 MDNHRERIANFRIEPPGLFRGRGDHPK--------------MGKLKKRIMPEDIIINCSK 434
Query: 463 EENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETAR 522
+ +A K + VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR
Sbjct: 435 DSKYPVAPAGHKWKEVRHDGKVTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETAR 494
Query: 523 KLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLR 581
+L + KIR Y+ DWKSKEM++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLR
Sbjct: 495 RLKMCVEKIRNTYKEDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLR 554
Query: 582 VEHIQLHEEKD 592
VEHI L +E D
Sbjct: 555 VEHINLFQELD 565
>gi|307574648|ref|NP_001182621.1| topoisomerase (DNA) I, gene 2 [Xenopus (Silurana) tropicalis]
Length = 775
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/494 (68%), Positives = 402/494 (81%), Gaps = 7/494 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + LS AEE+A+F+A+M++HEYTTKE F N+ DWRK MT +ER VITDL+KCDF
Sbjct: 254 GKPLPLSLQAEEVASFFAKMLDHEYTTKEIFRNNYFMDWRKEMTLEERMVITDLAKCDFT 313
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M Y+ K EE+K SKE+K KIK+ENE + +EYG C++D H+E+IGNF+IEPP LFRG
Sbjct: 314 EMFTYYKGKMEEKKNKSKEDKLKIKEENEKLLQEYGYCSMDHHRERIGNFKIEPPALFRG 373
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPK G LK+R+ EDIIINCSKDSK+P PPPGHKWKEVRHDN VTWLASWTENVQG
Sbjct: 374 RGDHPKQGMLKKRILPEDIIINCSKDSKIPEPPPGHKWKEVRHDNTVTWLASWTENVQGS 433
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLN +SKLKGEKDW+KYE ARKL + IR+ Y+ ++KSKEM++RQRAVALYFID
Sbjct: 434 VKYIMLNANSKLKGEKDWEKYEVARKLKHHVVTIRKTYRENFKSKEMKVRQRAVALYFID 493
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E DG YVV FDFLGKDSIRYYN+VPV
Sbjct: 494 KLALRAGNEKEEGETADTVGCCSLRVEHIKLYPELDGDKYVVEFDFLGKDSIRYYNKVPV 553
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK+VFKNLQLF+ENK+ DDLFDRL+T +LNKHL LMEGLTAKVFRTYNASITLQQQL
Sbjct: 554 EKQVFKNLQLFMENKQEGDDLFDRLSTPLLNKHLQSLMEGLTAKVFRTYNASITLQQQLQ 613
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL DP+ S KIL+YNRANRAVA+LCNHQR+ PK+ D+SM NLK KI K++Q+ A++
Sbjct: 614 ELTDPEESMPSKILSYNRANRAVAILCNHQRAPPKTFDQSMANLKSKIDAKKEQILLAKK 673
Query: 424 ALKDAKKAGESKA------MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK+AKK + K + + KK + R +EQL+++EVQ TD+EENK IAL TSKLNY
Sbjct: 674 ELKEAKKEAKEKESEKLNKVVESKKRGVQRAEEQLMRMEVQATDREENKQIALSTSKLNY 733
Query: 478 LDPRISVTWLASWT 491
LDPRISV W WT
Sbjct: 734 LDPRISVAWCKKWT 747
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 97/111 (87%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTENVQG VKYIMLN +SKLKGEKDW+KYE ARKL + IR+ Y+ ++KSK
Sbjct: 419 TVTWLASWTENVQGSVKYIMLNANSKLKGEKDWEKYEVARKLKHHVVTIRKTYRENFKSK 478
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EM++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E D
Sbjct: 479 EMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLYPELD 529
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKT R KF WA+DM DF+F
Sbjct: 752 KIYNKTYRDKFAWAVDMTETDFIF 775
>gi|49227597|ref|NP_001001838.1| DNA topoisomerase I, mitochondrial precursor [Danio rerio]
gi|40841767|gb|AAR92364.1| mitochondrial topoisomerase I [Danio rerio]
gi|67678162|gb|AAH96851.1| Mitochondrial topoisomerase I [Danio rerio]
Length = 600
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/488 (65%), Positives = 402/488 (82%), Gaps = 6/488 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+++KLS EEIATFYA+M++HEYTTKE F NF KDWRK MT++ER +IT LSKCDF
Sbjct: 80 GQQVKLSPLTEEIATFYAKMLDHEYTTKEVFQKNFFKDWRKEMTKEERKLITTLSKCDFT 139
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+H YFV+K+EE+K M+KEEK+ +KDE + +E+G C +DGH+EKIGNF++EPPGLFRG
Sbjct: 140 HIHKYFVEKAEEKKNMTKEEKQVLKDEAARLMEEFGYCLLDGHREKIGNFKLEPPGLFRG 199
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG+LK+R+Q ED+ INCSKDSK+P PP GHKWK V+HDN VTWLASW EN+ +
Sbjct: 200 RGEHPKMGRLKKRIQPEDVAINCSKDSKIPEPPAGHKWKRVQHDNTVTWLASWLENIPKR 259
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYIMLNPSSKLKGEKDWQKYETAR+L + + IR+ Y DWKS+EM+ RQR VA+YFID
Sbjct: 260 PKYIMLNPSSKLKGEKDWQKYETARRLKECVKSIRKRYMQDWKSREMKSRQRGVAIYFID 319
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD++ ADTVGCCSLRVEHI+LH+ DG +VV FDFLGKDSIRYYN+VPVE
Sbjct: 320 KLALRAGNEKDDESADTVGCCSLRVEHIRLHKHLDGLDHVVEFDFLGKDSIRYYNKVPVE 379
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
K+VFKNL+LF+++K DDLFDR++T LNK L+E M GLTAKVFRT+NAS TLQ QLN+
Sbjct: 380 KQVFKNLKLFIKHKDPEDDLFDRISTVNLNKALTESMSGLTAKVFRTFNASTTLQDQLNK 439
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L D + EKIL+YNRANRAVA+LCNHQR+ PK+ +KSM L+EKI K++Q+++A +
Sbjct: 440 LTSDDCTVEEKILSYNRANRAVAILCNHQRAAPKTFEKSMQLLQEKIQKKKEQIEEARKE 499
Query: 425 LKDAKK------AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
LK+AK+ + +S + +KK+ A+ RL +QL KL++QETD+EENK IALGTSKLNYL
Sbjct: 500 LKEAKQVDKDTPSDKSSKLVEKKQKAVQRLCDQLKKLQLQETDREENKVIALGTSKLNYL 559
Query: 479 DPRISVTW 486
DPRI+V W
Sbjct: 560 DPRITVAW 567
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/110 (72%), Positives = 94/110 (85%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW EN+ + KYIMLNPSSKLKGEKDWQKYETAR+L + + IR+ Y DWKS+
Sbjct: 245 TVTWLASWLENIPKRPKYIMLNPSSKLKGEKDWQKYETARRLKECVKSIRKRYMQDWKSR 304
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQR VA+YFIDKLALRAGNEKD++ ADTVGCCSLRVEHI+LH+ D
Sbjct: 305 EMKSRQRGVAIYFIDKLALRAGNEKDDESADTVGCCSLRVEHIRLHKHLD 354
>gi|256076899|ref|XP_002574746.1| DNA topoisomerase type I [Schistosoma mansoni]
gi|360044088|emb|CCD81635.1| putative dna topoisomerase type I [Schistosoma mansoni]
Length = 652
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/488 (69%), Positives = 392/488 (80%), Gaps = 6/488 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
K +KLS AEE+A FYARM++H+YTTKE FN NF +DW K+M E+ER I LSKCDFR
Sbjct: 165 SKPIKLSDHAEEVAGFYARMLDHDYTTKEVFNYNFFRDWVKTMNEEERRTIKSLSKCDFR 224
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF++ SEERK +KEEK+KIK+EN I EYG C +DGHK++IGNFRIEPPGLFRG
Sbjct: 225 EMHQYFLKLSEERKNRTKEEKQKIKEENLQIQNEYGYCILDGHKQRIGNFRIEPPGLFRG 284
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LK+R+ ED+IINCSKDSKVP PP GHKWKEVRHDN VTWLA WTEN+Q
Sbjct: 285 RGNHPKMGMLKKRIMPEDVIINCSKDSKVPAPPKGHKWKEVRHDNSVTWLACWTENIQNS 344
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYIMLNPSS+LKGEKDW+KYETAR L K I+KIR +Y+AD+K KEMRIRQRAVALYFID
Sbjct: 345 FKYIMLNPSSRLKGEKDWKKYETARCLHKVIDKIRADYRADFKHKEMRIRQRAVALYFID 404
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDED+ADTVGCCSLR EHI+LHEE +G+PYVV FDFLGKDSIRY N V V
Sbjct: 405 KLALRAGNEKDEDEADTVGCCSLRYEHIKLHEELNGQPYVVEFDFLGKDSIRYQNAVSVP 464
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKN++LF++NKK +DDLFDRLNT+VLN++L ELM+GLTAKVFRTYNAS TL++QL
Sbjct: 465 KRVFKNVKLFLKNKKENDDLFDRLNTTVLNQYLRELMDGLTAKVFRTYNASRTLEEQLER 524
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L +PD K+LAYNRANRAVAVLCNHQRSVPKS KSM NL++KI KR+Q+ +
Sbjct: 525 LTNPDDPPHAKLLAYNRANRAVAVLCNHQRSVPKSFAKSMENLQKKIDAKREQISEITSE 584
Query: 425 LKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
K K K K +K K L KE L KL++Q TD++ENK IAL TSKLNYL
Sbjct: 585 AKQIKADYKNHKQASKKVAYEKLKKRLASAKEALSKLQLQATDRDENKEIALSTSKLNYL 644
Query: 479 DPRISVTW 486
DPRISV W
Sbjct: 645 DPRISVAW 652
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 89/108 (82%), Positives = 98/108 (90%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SVTWLA WTEN+Q KYIMLNPSS+LKGEKDW+KYETAR L K I+KIR +Y+AD+K K
Sbjct: 330 SVTWLACWTENIQNSFKYIMLNPSSRLKGEKDWKKYETARCLHKVIDKIRADYRADFKHK 389
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMRIRQRAVALYFIDKLALRAGNEKDED+ADTVGCCSLR EHI+LHEE
Sbjct: 390 EMRIRQRAVALYFIDKLALRAGNEKDEDEADTVGCCSLRYEHIKLHEE 437
>gi|47211672|emb|CAF91446.1| unnamed protein product [Tetraodon nigroviridis]
Length = 783
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/521 (66%), Positives = 410/521 (78%), Gaps = 39/521 (7%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKL AEE+ATF+A+M++HEYTTK+ F NF KDWRK MT +E++ ITDL+KC+F
Sbjct: 230 GKPMKLGAPAEEVATFFAKMLDHEYTTKDVFRKNFFKDWRKEMTSEEKSKITDLNKCNFT 289
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M+ YF +SE RK MSKEEK+KIK+ENE I +EYG C +D HKE+IGNFRIEPPGLFRG
Sbjct: 290 EMNEYFKAQSEARKQMSKEEKQKIKEENERILQEYGFCIMDNHKERIGNFRIEPPGLFRG 349
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR++ EDIIINCSKDSK P PPPG KWKEVRHDN+VTWLASWTEN+QG
Sbjct: 350 RGDHPKMGMLKRRIRPEDIIINCSKDSKHPKPPPGTKWKEVRHDNKVTWLASWTENIQGS 409
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 410 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRTQYREDWKSKEMRIRQRAVALYFID 469
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI L+ + D + +VV FDFLGKDSIRYYN++PV
Sbjct: 470 KLALRAGNEKEEGETADTVGCCSLRVEHINLYPKLDDQEFVVEFDFLGKDSIRYYNKIPV 529
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLN--------------------------------TS 331
EKRVFKNLQLF+ENK+ DDLFDRLN TS
Sbjct: 530 EKRVFKNLQLFLENKQPGDDLFDRLNVRISECRPVKIRCASAGAVSGCCTRPFFSLPQTS 589
Query: 332 VLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCN 391
+LNKHL ELM+GLTAKVFRTYNASITLQQQL EL D S KIL+YNRANRAVA+LCN
Sbjct: 590 ILNKHLQELMDGLTAKVFRTYNASITLQQQLKELSCSDDSLPAKILSYNRANRAVAILCN 649
Query: 392 HQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAK---KAG---ESKAMTDKKKTAL 445
HQR+ PK+ +KSM NL+ KI K+KQ+ A + LK AK KA +SK + K+ A+
Sbjct: 650 HQRAPPKTFEKSMQNLQTKIDEKQKQLSAARKQLKGAKAEHKASHDDKSKKAVEVKRKAV 709
Query: 446 GRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
R++EQL+KL+VQ TD+EENK IALGTSKLNYLDPRISV W
Sbjct: 710 QRIEEQLMKLQVQATDREENKQIALGTSKLNYLDPRISVAW 750
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/114 (75%), Positives = 102/114 (89%), Gaps = 1/114 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLASWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKE
Sbjct: 396 VTWLASWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRTQYREDWKSKE 455
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDEKKI 596
MRIRQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI L+ + D+++
Sbjct: 456 MRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLYPKLDDQEF 509
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA DF F
Sbjct: 760 KIYNKTQREKFAWAIDMAEKDFEF 783
>gi|357604317|gb|EHJ64132.1| hypothetical protein KGM_04878 [Danaus plexippus]
Length = 873
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/418 (78%), Positives = 360/418 (86%), Gaps = 5/418 (1%)
Query: 74 SEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGK 133
SE+ K SKEEK +K +NE I KEYG CTIDGHKEKIGNFRIEPPGLFRGRGEHPKMG
Sbjct: 423 SEKNKNRSKEEKAALKAKNEEIQKEYGFCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGM 482
Query: 134 LKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPS 193
LKRRV ED+IINCSKDSK+P PP GHKWKEVRHDN VTWLASWTENVQ Q KY+MLNPS
Sbjct: 483 LKRRVMPEDVIINCSKDSKIPKPPAGHKWKEVRHDNTVTWLASWTENVQQQAKYVMLNPS 542
Query: 194 SKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNE 253
SKLKGEKDWQKYETAR L K I+KIRE Y++DWK+KEMR+RQRAVALYFID+LALRAGNE
Sbjct: 543 SKLKGEKDWQKYETARNLHKCIDKIRETYKSDWKAKEMRVRQRAVALYFIDRLALRAGNE 602
Query: 254 KDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQL 313
KD+DQADTVGCCSLRVEHI+LH+EKDGK +VV FDFLGKDSIRYYNEVPVEKRVFKNL++
Sbjct: 603 KDDDQADTVGCCSLRVEHIELHKEKDGKEFVVVFDFLGKDSIRYYNEVPVEKRVFKNLEI 662
Query: 314 FVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEA 373
F+ENKK SDDLFDRLNT LN+HL ELM GLTAKVFRTYNASITLQ+QL EL DPD +
Sbjct: 663 FMENKKDSDDLFDRLNTQTLNEHLKELMPGLTAKVFRTYNASITLQRQLEELTDPDATIP 722
Query: 374 EKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG- 432
EKILAYNRANRAVA+LCNHQR+VPK H KSM LKEKI KR QV +AE +DA KA
Sbjct: 723 EKILAYNRANRAVAILCNHQRAVPKGHSKSMEALKEKIQAKRDQVDEAEADYRDAAKAAK 782
Query: 433 ----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ K DKKK AL RLKEQL KLE+QETD++ENKTIALGTSKLNYLDPRISV+W
Sbjct: 783 RGSVKEKLACDKKKKALERLKEQLKKLELQETDRDENKTIALGTSKLNYLDPRISVSW 840
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 94/114 (82%), Positives = 106/114 (92%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTENVQ Q KY+MLNPSSKLKGEKDWQKYETAR L K I+KIRE Y++DWK+K
Sbjct: 519 TVTWLASWTENVQQQAKYVMLNPSSKLKGEKDWQKYETARNLHKCIDKIRETYKSDWKAK 578
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKI 596
EMR+RQRAVALYFID+LALRAGNEKD+DQADTVGCCSLRVEHI+LH+EKD K+
Sbjct: 579 EMRVRQRAVALYFIDRLALRAGNEKDDDQADTVGCCSLRVEHIELHKEKDGKEF 632
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMA D++F
Sbjct: 850 KIYNKTQRDKFRWAIDMAGPDYIF 873
>gi|194215159|ref|XP_001496421.2| PREDICTED: DNA topoisomerase I, mitochondrial-like [Equus caballus]
Length = 655
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/490 (66%), Positives = 394/490 (80%), Gaps = 9/490 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS AEE+ATFY +M++HEYTTKE F NF DWRK MT +ER +I L KCDF
Sbjct: 134 GKPVKLSLAAEEVATFYGKMLDHEYTTKEVFQNNFFSDWRKEMTAEERKIIKHLDKCDFT 193
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RKA+S+EEK+K+K+E E + +E+G CT+DGH+EKIGNF+ EPPGLFRG
Sbjct: 194 EIHRYFVDKTAARKALSREEKQKLKEEAEKLQQEFGYCTLDGHREKIGNFKTEPPGLFRG 253
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR+ ED+ INCS+DSK+P PP GH+WKEVR DN VTWLASWTEN+Q
Sbjct: 254 RGDHPKMGMLKRRILPEDVTINCSRDSKIPKPPAGHQWKEVRSDNTVTWLASWTENIQNS 313
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+MLNPSSKLKGEKDWQKYE AR+L +++IR Y+ADWKS+EM+ RQ AVALYFID
Sbjct: 314 IKYVMLNPSSKLKGEKDWQKYEVARRLKGVVDEIRSQYRADWKSREMKKRQCAVALYFID 373
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHIQL+ E DG +VV DFLGKDSIRYYN VPV
Sbjct: 374 KLALRAGNEKEEGETADTVGCCSLRVEHIQLYPEADGCQHVVELDFLGKDSIRYYNRVPV 433
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNLQLF+ENK DDLFDRL T+ LNKHL +LM+GLTAKVFRTYNAS+TLQ+QL
Sbjct: 434 EKPVYKNLQLFMENKSRGDDLFDRLTTTSLNKHLQDLMDGLTAKVFRTYNASVTLQEQLR 493
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+KQV +A+
Sbjct: 494 ALTRAEDSVAAKILSYNRANRAVAILCNHQRATPKTFEKSMQNLQLKIEAKKKQVAEAKA 553
Query: 424 ALKDAKKAGE-------SKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLN 476
LK A +AG S++ +K++ L +L+EQL++L Q TDKEE+K +ALGTSKLN
Sbjct: 554 ELKQA-RAGHKCRGDDRSRSFLEKRERLLEKLEEQLMRLSTQATDKEESKQVALGTSKLN 612
Query: 477 YLDPRISVTW 486
YLDPRISV W
Sbjct: 613 YLDPRISVAW 622
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 97/111 (87%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+Q +KY+MLNPSSKLKGEKDWQKYE AR+L +++IR Y+ADWKS+
Sbjct: 299 TVTWLASWTENIQNSIKYVMLNPSSKLKGEKDWQKYEVARRLKGVVDEIRSQYRADWKSR 358
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EM+ RQ AVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHIQL+ E D
Sbjct: 359 EMKKRQCAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIQLYPEAD 409
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
+IYNKTQR +F WA+DMA DF F
Sbjct: 632 RIYNKTQRERFAWALDMAGEDFEF 655
>gi|348519252|ref|XP_003447145.1| PREDICTED: DNA topoisomerase 1-like [Oreochromis niloticus]
Length = 713
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/491 (67%), Positives = 392/491 (79%), Gaps = 9/491 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS AEE+A F+A+M++HEYTTK F NF KDWRK MT +ER++I DL KCDF
Sbjct: 190 GKTVKLSLAAEEVAVFFAQMLDHEYTTKVVFRENFFKDWRKEMTHEERSLIQDLDKCDFG 249
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++HA K+E RK MSKEEK+ +K+ N+ I EYG C +D HKE+IGNF+IEPPGLFRG
Sbjct: 250 EIHAMHKAKTEARKNMSKEEKQALKEANQKIVDEYGYCLLDHHKERIGNFKIEPPGLFRG 309
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPK G LK+R+Q ED+IINCSKDS++P PP GH WKEVRHDN VTWL SWTEN+QG
Sbjct: 310 RGEHPKQGMLKKRIQPEDVIINCSKDSRIPVPPAGHHWKEVRHDNSVTWLVSWTENIQGS 369
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYIMLN +SKLKGEKDW+KYE ARKL ++ IR Y D KSK+M RQRAVALYFID
Sbjct: 370 NKYIMLNANSKLKGEKDWEKYEVARKLKSRVDDIRYQYLQDLKSKQMVTRQRAVALYFID 429
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LHE+ DG VV FDFLGKD IRYYN+VPV
Sbjct: 430 KLALRAGNEKEEGETADTVGCCSLRVEHITLHEQLDGNECVVEFDFLGKDCIRYYNKVPV 489
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
K+VFKNL+LF+ENK+ D+LFDRLNT+VLNKHLS LM GLTAKVFRTYNASITLQQQL
Sbjct: 490 IKKVFKNLKLFLENKQPGDELFDRLNTNVLNKHLSSLMPGLTAKVFRTYNASITLQQQLK 549
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL + + AEK+L+YNRANRAVA+LCNHQR+ PK+ ++SM NL+ KI +++Q+ A+
Sbjct: 550 ELTNKSDNVAEKLLSYNRANRAVAILCNHQRAPPKTFEQSMANLQAKIDARKEQLALAKT 609
Query: 424 ALKDAKKAGESK--------AMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
LK AKK ++K A+ ++KK A+ R +EQLLKLEVQ TD+EENK IALGTSKL
Sbjct: 610 ELKQAKKEAKTKGNSDPKLQALVERKKAAVKRCEEQLLKLEVQATDREENKQIALGTSKL 669
Query: 476 NYLDPRISVTW 486
NYLDPRISV W
Sbjct: 670 NYLDPRISVAW 680
Score = 168 bits (425), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 91/111 (81%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SVTWL SWTEN+QG KYIMLN +SKLKGEKDW+KYE ARKL ++ IR Y D KSK
Sbjct: 355 SVTWLVSWTENIQGSNKYIMLNANSKLKGEKDWEKYEVARKLKSRVDDIRYQYLQDLKSK 414
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
+M RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LHE+ D
Sbjct: 415 QMVTRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHITLHEQLD 465
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDM ADF F
Sbjct: 690 KIYNKTQREKFAWAIDMTEADFEF 713
>gi|312087220|ref|XP_003145386.1| DNA topoisomerase I [Loa loa]
gi|307759451|gb|EFO18685.1| DNA topoisomerase I [Loa loa]
Length = 701
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/483 (67%), Positives = 390/483 (80%), Gaps = 5/483 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKL+ EE+A+FYA+++EHEYTTKE FN NF DWRK MT ER ITDL+KCDFR
Sbjct: 190 GKVMKLTPLTEEVASFYAKILEHEYTTKETFNKNFFMDWRKVMTPAEREKITDLTKCDFR 249
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHA++VQ EER+++SKE+K+KIK+ + K YGV IDGHK+KIGNFRIEPP LFRG
Sbjct: 250 EMHAHYVQLREERRSLSKEDKQKIKEAKQEEAKMYGVAYIDGHKQKIGNFRIEPPDLFRG 309
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG+LKRR+ ED+IINCSKDS++P PP GH+WKEVRHDN VTWL SWT+N+ G
Sbjct: 310 RGGHPKMGRLKRRINPEDVIINCSKDSEIPKPPEGHRWKEVRHDNTVTWLCSWTDNILGS 369
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSSK+KGEKD++K+ETAR+L + IRENY D KSKEMR+RQRAVALYFID
Sbjct: 370 IKYIMLNPSSKIKGEKDYEKFETARRLKDVVENIRENYTKDLKSKEMRVRQRAVALYFID 429
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEKD D+ ADTVGCCSLR EHIQLHE+ D YVV FDFLGKDSIRYYN+VPV
Sbjct: 430 KLALRAGNEKDVDEAADTVGCCSLRCEHIQLHEKLDDNDYVVEFDFLGKDSIRYYNKVPV 489
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNL+LF+ENK G+DDLFDRL+T+ LNK+L LM GLTAKVFRTYNASITLQQQL
Sbjct: 490 EKRVFKNLKLFMENKSGNDDLFDRLDTASLNKYLQSLMPGLTAKVFRTYNASITLQQQLE 549
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L D + E +L YNRANR VA+LCNHQR+VPKSH+KSM NLK KI K+ ++K +
Sbjct: 550 KLTKDDSTVPELLLCYNRANRQVAILCNHQRAVPKSHEKSMENLKVKIKTKKAELK-EAK 608
Query: 424 ALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRIS 483
+ + +K K+ + R+KEQL KL++Q TDK+ENK IAL TSKLNYLDPRIS
Sbjct: 609 EELEKARGDVAKQRASKR---VDRIKEQLRKLKIQRTDKDENKQIALSTSKLNYLDPRIS 665
Query: 484 VTW 486
V W
Sbjct: 666 VAW 668
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 97/112 (86%), Gaps = 1/112 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWT+N+ G +KYIMLNPSSK+KGEKD++K+ETAR+L + IRENY D KSK
Sbjct: 355 TVTWLCSWTDNILGSIKYIMLNPSSKIKGEKDYEKFETARRLKDVVENIRENYTKDLKSK 414
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDE 593
EMR+RQRAVALYFIDKLALRAGNEKD D+ ADTVGCCSLR EHIQLHE+ D+
Sbjct: 415 EMRVRQRAVALYFIDKLALRAGNEKDVDEAADTVGCCSLRCEHIQLHEKLDD 466
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KI+NKTQR KFRWAIDMA D+VF
Sbjct: 678 KIFNKTQREKFRWAIDMADEDYVF 701
>gi|170590069|ref|XP_001899795.1| DNA topoisomerase I [Brugia malayi]
gi|158592714|gb|EDP31311.1| DNA topoisomerase I, putative [Brugia malayi]
Length = 751
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/487 (66%), Positives = 387/487 (79%), Gaps = 5/487 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKL+ EE+A+FYA+++EHEYTTK+ FN NF DWRK MT ER ITDL+KCDFR
Sbjct: 240 GKVMKLAPLTEEVASFYAKILEHEYTTKDIFNKNFFTDWRKVMTPAEREKITDLTKCDFR 299
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH ++++ EER+++SKEEK+K+K+ + K YGV IDGHK+KIGNFRIEPP LFRG
Sbjct: 300 EMHDHYIKLREERRSLSKEEKQKLKEIKQEEAKIYGVAYIDGHKQKIGNFRIEPPDLFRG 359
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG+LK+RV ED+IINCSKDS++P PP GH+WKEVRHDN VTWL SWT+N+ G
Sbjct: 360 RGGHPKMGRLKKRVNPEDVIINCSKDSEIPKPPEGHRWKEVRHDNTVTWLCSWTDNILGS 419
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSSK+KGEKD++K+ETAR+L + IRENY D KSKEMR+RQRAVALYFID
Sbjct: 420 IKYIMLNPSSKIKGEKDYEKFETARRLKDIVGSIRENYTKDLKSKEMRVRQRAVALYFID 479
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEKD D+ ADTVGCCSLR EHIQLHE+ D YVV FDFLGKDSIRYYN+VPV
Sbjct: 480 KLALRAGNEKDVDEAADTVGCCSLRCEHIQLHEKLDDNDYVVEFDFLGKDSIRYYNKVPV 539
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNL+LF+ENK GSDDLFDRL+T+ LNK+L LM GLTAKVFRTYNASITLQQQL+
Sbjct: 540 EKRVFKNLKLFMENKSGSDDLFDRLDTASLNKYLQSLMPGLTAKVFRTYNASITLQQQLD 599
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L D + E +L YNRANR VA+LCNHQR+VPKSH+KSM NLK KI K K +
Sbjct: 600 KLTKDDSTAPELLLCYNRANRQVAILCNHQRAVPKSHEKSMENLKAKIKAK----KTELK 655
Query: 424 ALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRIS 483
K+ + S + + R+KEQL KL++Q TDK+ENK IAL TSKLNYLDPRIS
Sbjct: 656 EAKEELEKAHSDTAKQRATKRVDRVKEQLRKLKIQRTDKDENKQIALSTSKLNYLDPRIS 715
Query: 484 VTWLASW 490
V W +
Sbjct: 716 VAWCKKY 722
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 97/112 (86%), Gaps = 1/112 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWT+N+ G +KYIMLNPSSK+KGEKD++K+ETAR+L + IRENY D KSK
Sbjct: 405 TVTWLCSWTDNILGSIKYIMLNPSSKIKGEKDYEKFETARRLKDIVGSIRENYTKDLKSK 464
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDE 593
EMR+RQRAVALYFIDKLALRAGNEKD D+ ADTVGCCSLR EHIQLHE+ D+
Sbjct: 465 EMRVRQRAVALYFIDKLALRAGNEKDVDEAADTVGCCSLRCEHIQLHEKLDD 516
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KI+NKTQR KFRWAIDMA ++VF
Sbjct: 728 KIFNKTQREKFRWAIDMADENYVF 751
>gi|358339245|dbj|GAA28973.2| DNA topoisomerase I [Clonorchis sinensis]
Length = 711
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/488 (68%), Positives = 395/488 (80%), Gaps = 6/488 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ ++LS AEE+A FYARM++H+YTTKE FN NF KDW K M + ER +I LSKCDFR
Sbjct: 164 GQPVRLSDAAEEVAGFYARMLDHDYTTKEVFNKNFFKDWLKVMNDDERRIIKSLSKCDFR 223
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHA+F++ +EERK +KEEK+K+K+EN A+ EYG CT+DGH+++IGNFRIEPPGLFRG
Sbjct: 224 EMHAHFLKLTEERKNRTKEEKQKLKEENLALLNEYGYCTLDGHRQRIGNFRIEPPGLFRG 283
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LK+RV E +IINCSK+SK+P PP GH+WKEVRHDN VTWLA WTENVQ
Sbjct: 284 RGNHPKMGMLKKRVLPEHVIINCSKNSKIPVPPKGHRWKEVRHDNTVTWLACWTENVQNN 343
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+MLNPSS+LKGEKDW+KYETAR L K I++IR +Y+AD+K KEMRIRQRAVALYFID
Sbjct: 344 FKYVMLNPSSRLKGEKDWKKYETARGLHKIIDRIRADYRADFKHKEMRIRQRAVALYFID 403
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
+LALRAGNEKDED+ADTVGCCSLR EHI+LHEE DGK YVV FDFLGKDSIRY N V V
Sbjct: 404 RLALRAGNEKDEDEADTVGCCSLRYEHIKLHEELDGKQYVVEFDFLGKDSIRYQNSVAVP 463
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKN++LF++NKK +DDLFDRLNT+VLN++L ELMEGLTAKVFRTYNAS TL++QL
Sbjct: 464 KRVFKNVRLFLQNKKENDDLFDRLNTTVLNQYLRELMEGLTAKVFRTYNASRTLEEQLEL 523
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP+ S EK+LAYNRANRAVAVLCNHQR+VPKS KSM NL++KI KR Q+ +
Sbjct: 524 LTDPNDSPQEKLLAYNRANRAVAVLCNHQRAVPKSFAKSMENLQKKIDAKRDQIAEITNE 583
Query: 425 LKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
K K K K +K K L KEQL KL++Q TD++ENK IAL TSKLNYL
Sbjct: 584 AKQIKADYKRNKQVAKKVAYEKLKKRLSVAKEQLAKLQLQATDRDENKEIALSTSKLNYL 643
Query: 479 DPRISVTW 486
DPRI+V W
Sbjct: 644 DPRITVAW 651
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/113 (77%), Positives = 101/113 (89%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA WTENVQ KY+MLNPSS+LKGEKDW+KYETAR L K I++IR +Y+AD+K K
Sbjct: 329 TVTWLACWTENVQNNFKYVMLNPSSRLKGEKDWKKYETARGLHKIIDRIRADYRADFKHK 388
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKK 595
EMRIRQRAVALYFID+LALRAGNEKDED+ADTVGCCSLR EHI+LHEE D K+
Sbjct: 389 EMRIRQRAVALYFIDRLALRAGNEKDEDEADTVGCCSLRYEHIKLHEELDGKQ 441
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
K+YNKTQR KF+WAIDMATA++ F
Sbjct: 661 KVYNKTQREKFQWAIDMATAEYKF 684
>gi|326918186|ref|XP_003205372.1| PREDICTED: DNA topoisomerase I, mitochondrial-like, partial
[Meleagris gallopavo]
Length = 521
Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/488 (69%), Positives = 401/488 (82%), Gaps = 7/488 (1%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRK 65
K +KLS EEIATFYA+M++HEYTTKE F NF DWRK MT +E+ +I L KCDFR+
Sbjct: 1 KPLKLSLATEEIATFYAKMLDHEYTTKEIFQNNFFNDWRKEMTPQEQEIIKQLDKCDFRE 60
Query: 66 MHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGR 125
+H YFV K+E RKA+SKEEK+K+K+E + I +EYG C +DGH+EKIGNF+ EPPGLFRGR
Sbjct: 61 IHKYFVDKNEARKALSKEEKQKLKEEADKIQEEYGYCILDGHREKIGNFKTEPPGLFRGR 120
Query: 126 GEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQV 185
G+HPKMG LK+R+ ED+IINCSKDSK+P PP GHKWKEVR DN VTWLASWTEN+Q +
Sbjct: 121 GDHPKMGMLKKRIMPEDVIINCSKDSKIPEPPVGHKWKEVRFDNTVTWLASWTENIQNSL 180
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDK 245
KYIMLNPSSKLKGEKDWQK+E AR+L ++KIR YQADWKSKEM+ RQRAVALYFIDK
Sbjct: 181 KYIMLNPSSKLKGEKDWQKFEVARRLKDVVHKIRAQYQADWKSKEMKKRQRAVALYFIDK 240
Query: 246 LALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
LALRAGNEK+E + ADTVGCCSLRVEHI+LH E DG+ +VV FDFLGKDSIRYYN+V VE
Sbjct: 241 LALRAGNEKEEGETADTVGCCSLRVEHIKLHSELDGQEHVVEFDFLGKDSIRYYNKVSVE 300
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
K VFKNLQLF++NK DDLFDRL+T +LNKHL ELM GLTAKVFRTYNASITLQ+QL
Sbjct: 301 KPVFKNLQLFMKNKDPGDDLFDRLSTVILNKHLQELMNGLTAKVFRTYNASITLQEQLKA 360
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L +P+ S A K+L+YNRANRAVA+LCNHQRS PK+ +KSM NL+ KI K++Q++ A +
Sbjct: 361 LTNPEDSVAGKLLSYNRANRAVAILCNHQRSTPKTFEKSMQNLQTKIDAKKEQLEKARQE 420
Query: 425 LKDA------KKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
L++A KK +++A KKK L RLKEQL+KL VQ TDKEENK IALGTSKLNYL
Sbjct: 421 LEEAEDELKDKKDAKAEANVQKKKKLLERLKEQLVKLNVQATDKEENKQIALGTSKLNYL 480
Query: 479 DPRISVTW 486
DPRIS+ W
Sbjct: 481 DPRISIAW 488
Score = 185 bits (469), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 87/111 (78%), Positives = 98/111 (88%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+Q +KYIMLNPSSKLKGEKDWQK+E AR+L ++KIR YQADWKSK
Sbjct: 165 TVTWLASWTENIQNSLKYIMLNPSSKLKGEKDWQKFEVARRLKDVVHKIRAQYQADWKSK 224
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+LH E D
Sbjct: 225 EMKKRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLHSELD 275
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KI+NKTQR KF WAIDM DF F
Sbjct: 498 KIFNKTQREKFAWAIDMTDEDFEF 521
>gi|380794735|gb|AFE69243.1| DNA topoisomerase I, mitochondrial, partial [Macaca mulatta]
Length = 576
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/489 (65%), Positives = 388/489 (79%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK M+LS AEE+ATFY RM++HEYTTKE F NF DWRK MT +ER VI L KCDF
Sbjct: 55 GKPMRLSVKAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMTVEEREVIKSLDKCDFT 114
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +++EEK+K+K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 115 EIHRYFVDKAAARKVLTREEKQKLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRG 174
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV ED++INCS+DSK+P PP GH+WKEVR DN V WLA+WTE++Q
Sbjct: 175 RGDHPKMGMLKRRVMPEDVVINCSRDSKIPKPPAGHQWKEVRSDNTVMWLAAWTESIQNS 234
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+MLNP SKLKGEK WQK+ETAR+L +++IR YQADWKS+EM+ RQRAVALYFID
Sbjct: 235 IKYVMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYQADWKSQEMKTRQRAVALYFID 294
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK D + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKDSIRYYN VPV
Sbjct: 295 KLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDSIRYYNRVPV 354
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNLQLF++NK DDLFDRL T+ LNKHL ELM+GLTAKVFRTYNAS+TLQ+QL
Sbjct: 355 EKPVYKNLQLFMKNKDPQDDLFDRLTTTSLNKHLHELMDGLTAKVFRTYNASVTLQEQLR 414
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANRAVA+LCNHQR+ + +KSM NL+ KI K++QV +A
Sbjct: 415 ALTRAEDSIAAKILSYNRANRAVAILCNHQRATSSTFEKSMQNLQTKIQVKKEQVAEARA 474
Query: 424 ALKDAKKA------GESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A+ G+S+++ +KK+ L +L+EQL L VQ TDKEENK +AL TSKLNY
Sbjct: 475 ELRKARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAWLSVQATDKEENKQVALSTSKLNY 534
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 535 LDPRISIAW 543
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA+WTE++Q +KY+MLNP SKLKGEK WQK+ETAR+L +++IR YQADWKS+
Sbjct: 220 TVMWLAAWTESIQNSIKYVMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYQADWKSQ 279
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 280 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 330
>gi|47604922|ref|NP_001001300.1| DNA topoisomerase I, mitochondrial [Gallus gallus]
gi|40841765|gb|AAR92363.1| mitochondrial topoisomerase I [Gallus gallus]
Length = 593
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/489 (69%), Positives = 403/489 (82%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS EEIATFYA+M++HEYTTKE F NF DWRK MT +E+ +I L KCDFR
Sbjct: 72 GKPLKLSLATEEIATFYAKMLDHEYTTKEIFQNNFFNDWRKEMTPQEQEIIKQLDKCDFR 131
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+E RKA+SKEEK+K+K+E + I +EYG C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 132 EIHKYFVDKNEARKALSKEEKQKLKEEADKIQEEYGYCILDGHREKIGNFKTEPPGLFRG 191
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LK+R+ ED+IINCSKDSK+P PP GHKWKEVR DN VTWLASWTEN+Q
Sbjct: 192 RGDHPKMGMLKKRIMPEDVIINCSKDSKIPEPPVGHKWKEVRFDNTVTWLASWTENIQNS 251
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSSKLKGEKDWQK+E ARKL ++KIR YQADWKSKEM+ RQRAVALYFID
Sbjct: 252 LKYIMLNPSSKLKGEKDWQKFEVARKLKDVVHKIRAQYQADWKSKEMKKRQRAVALYFID 311
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+LH + DG+ +VV FDFLGKDSIRYYN+V V
Sbjct: 312 KLALRAGNEKEEGETADTVGCCSLRVEHIKLHSKLDGQEHVVEFDFLGKDSIRYYNKVSV 371
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK VFKNLQLF++NK DDLFDRL+T+VLNKHL +LM GLTAKVFRTYNASITLQ+QL
Sbjct: 372 EKPVFKNLQLFMKNKDPGDDLFDRLSTAVLNKHLQKLMNGLTAKVFRTYNASITLQEQLK 431
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L +P+ S A K+L+YNRANRAVA+LCNHQRS PK+ +KSM NL+ KI K++Q++ A++
Sbjct: 432 ALTNPEDSVAGKLLSYNRANRAVAILCNHQRSTPKTFEKSMQNLQTKIDAKKEQLEKAQQ 491
Query: 424 ALKDA------KKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L++A KK +++A KKK L RLKEQL KL VQ TDKEENK IALGTSKLNY
Sbjct: 492 ELEEAEDEFKDKKDAKAEANVQKKKKLLERLKEQLAKLNVQATDKEENKQIALGTSKLNY 551
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 552 LDPRISIAW 560
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/111 (78%), Positives = 98/111 (88%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+Q +KYIMLNPSSKLKGEKDWQK+E ARKL ++KIR YQADWKSK
Sbjct: 237 TVTWLASWTENIQNSLKYIMLNPSSKLKGEKDWQKFEVARKLKDVVHKIRAQYQADWKSK 296
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+LH + D
Sbjct: 297 EMKKRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLHSKLD 347
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KI+NKTQR KF WAIDM DF F
Sbjct: 570 KIFNKTQREKFAWAIDMTDEDFEF 593
>gi|355765874|gb|EHH62465.1| DNA topoisomerase I, mitochondrial, partial [Macaca fascicularis]
Length = 570
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/489 (64%), Positives = 388/489 (79%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK M+LS AEE+ATFY RM++HEYTTKE F NF DWRK MT +ER VI L KCDF
Sbjct: 49 GKPMRLSVKAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMTVEEREVIKSLDKCDFT 108
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +++EEK+K+K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 109 EIHRYFVDKAAARKVLTREEKQKLKEEAENLQQEFGYCILDGHREKIGNFKTEPPGLFRG 168
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV ED++INCS+DSK+P PP GH+WKEVR DN V WLA+WTE++Q
Sbjct: 169 RGDHPKMGMLKRRVMPEDVVINCSRDSKIPKPPAGHQWKEVRSDNTVMWLAAWTESIQNS 228
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+MLNP SKLKGEK WQK+ETAR+L +++IR YQADWKS+EM+ RQRAVALYFID
Sbjct: 229 IKYVMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYQADWKSQEMKTRQRAVALYFID 288
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK D + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKDSIRYYN VPV
Sbjct: 289 KLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDSIRYYNRVPV 348
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNLQLF++NK DD+FDRL T+ LNKHL ELM+GLTAKVFRTYNAS+TLQ+QL
Sbjct: 349 EKPVYKNLQLFMKNKDPQDDIFDRLTTTSLNKHLHELMDGLTAKVFRTYNASVTLQEQLR 408
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANRAVA+LCNHQR+ + +KSM NL+ KI K++QV +A
Sbjct: 409 ALTRAEDSIAAKILSYNRANRAVAILCNHQRATSSTFEKSMQNLQTKIQVKKEQVAEARA 468
Query: 424 ALKDAKKA------GESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A+ G+S+++ +KK+ L +L+EQL L VQ TDKEENK +AL TSKLNY
Sbjct: 469 ELRKARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAWLSVQATDKEENKQVALSTSKLNY 528
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 529 LDPRISIAW 537
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA+WTE++Q +KY+MLNP SKLKGEK WQK+ETAR+L +++IR YQADWKS+
Sbjct: 214 TVMWLAAWTESIQNSIKYVMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYQADWKSQ 273
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 274 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 324
>gi|16418461|ref|NP_443195.1| DNA topoisomerase I, mitochondrial isoform 1 precursor [Homo
sapiens]
gi|20140694|sp|Q969P6.1|TOP1M_HUMAN RecName: Full=DNA topoisomerase I, mitochondrial; Short=TOP1mt;
Flags: Precursor
gi|15705401|gb|AAL05624.1|AF349017_1 topoisomerase I [Homo sapiens]
gi|15919359|gb|AAL10791.1| topoisomerase I [Homo sapiens]
gi|311346982|gb|ADP90416.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346984|gb|ADP90417.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346986|gb|ADP90418.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346990|gb|ADP90420.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347000|gb|ADP90425.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347002|gb|ADP90426.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347004|gb|ADP90427.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347006|gb|ADP90428.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347008|gb|ADP90429.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347010|gb|ADP90430.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347016|gb|ADP90433.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347018|gb|ADP90434.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347020|gb|ADP90435.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347022|gb|ADP90436.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347024|gb|ADP90437.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347028|gb|ADP90439.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347030|gb|ADP90440.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347034|gb|ADP90442.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347036|gb|ADP90443.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347038|gb|ADP90444.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347040|gb|ADP90445.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347042|gb|ADP90446.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347046|gb|ADP90448.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347052|gb|ADP90451.1| mitochondrial DNA topoisomerase I [Homo sapiens]
Length = 601
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/489 (65%), Positives = 389/489 (79%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ ++LS AEE+ATFY RM++HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 80 GRPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFT 139
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +S+EEK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRG
Sbjct: 140 EIHRYFVDKAAARKVLSREEKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRG 199
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ
Sbjct: 200 RGDHPKMGMLKRRITPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNS 259
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 260 IKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 319
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK D + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPV
Sbjct: 320 KLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPV 379
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNLQLF+ENK DDLFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL
Sbjct: 380 EKPVYKNLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLR 439
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A
Sbjct: 440 ALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARA 499
Query: 424 ALKD------AKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A+ G+S+++ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNY
Sbjct: 500 ELRRARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNY 559
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 560 LDPRISIAW 568
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 245 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 304
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 305 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 355
>gi|324500963|gb|ADY40435.1| DNA topoisomerase 1 [Ascaris suum]
Length = 723
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/483 (69%), Positives = 392/483 (81%), Gaps = 5/483 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G +KLS +AEE+ATFYA+M++HEYTTK+AFN NF KDWRK+MT ER IT+L KCDFR
Sbjct: 212 GNVIKLSPEAEEVATFYAKMLDHEYTTKDAFNNNFFKDWRKTMTAAERETITELEKCDFR 271
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M A+F + SEERKAMSKEEK+K+K+ EA K YG IDGH++KIGNFRIEPPGLFRG
Sbjct: 272 PMAAHFQKLSEERKAMSKEEKQKLKEAKEAEMKIYGYAVIDGHRQKIGNFRIEPPGLFRG 331
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG+LK+RV+ ED+IINCSKDS++P PP GHKWKEVRHDN VTWL SWTENV GQ
Sbjct: 332 RGGHPKMGRLKKRVRPEDVIINCSKDSEIPVPPEGHKWKEVRHDNTVTWLCSWTENVLGQ 391
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYIMLNPSSK+KGEKD++K+ETAR+L ++ IR Y AD+KSKEMRIRQRAVALYFID
Sbjct: 392 NKYIMLNPSSKIKGEKDYEKFETARRLKSRVDDIRAVYTADFKSKEMRIRQRAVALYFID 451
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEKD D+ ADTVGCCSLR EHI+LHE+ D K YVV FDF GKDSIRYYN+VPV
Sbjct: 452 KLALRAGNEKDVDEVADTVGCCSLRCEHIKLHEKLDDKDYVVEFDFPGKDSIRYYNKVPV 511
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVF NL+LF+ENK DDLFDRL+T+ LN+HL LM GLT KVFRTYNASITLQQQL
Sbjct: 512 EKRVFNNLKLFMENKDPGDDLFDRLDTTTLNQHLQSLMPGLTVKVFRTYNASITLQQQLE 571
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L S E +L+YNRANR VA+LCNHQR+VPKSH+KSM NL KI K+ ++K+A+
Sbjct: 572 KLTKEGGSVQENLLSYNRANRQVAILCNHQRAVPKSHEKSMENLSAKIKAKKAELKEAKE 631
Query: 424 ALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRIS 483
L+ A+ A K K + R+KEQL +L++Q TDK+ENK IAL TSKLNYLDPRIS
Sbjct: 632 ELEKAR----GDAAKQKAKKKVERIKEQLKRLKIQRTDKDENKQIALSTSKLNYLDPRIS 687
Query: 484 VTW 486
V W
Sbjct: 688 VAW 690
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/113 (76%), Positives = 99/113 (87%), Gaps = 1/113 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWTENV GQ KYIMLNPSSK+KGEKD++K+ETAR+L ++ IR Y AD+KSK
Sbjct: 377 TVTWLCSWTENVLGQNKYIMLNPSSKIKGEKDYEKFETARRLKSRVDDIRAVYTADFKSK 436
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKD D+ ADTVGCCSLR EHI+LHE+ D+K
Sbjct: 437 EMRIRQRAVALYFIDKLALRAGNEKDVDEVADTVGCCSLRCEHIKLHEKLDDK 489
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KI+N+TQR KFRWAIDM DFVF
Sbjct: 700 KIFNRTQREKFRWAIDMTDEDFVF 723
>gi|324501452|gb|ADY40648.1| DNA topoisomerase 1 [Ascaris suum]
Length = 723
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/483 (69%), Positives = 392/483 (81%), Gaps = 5/483 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G +KLS +AEE+ATFYA+M++HEYTTK+AFN NF KDWRK+MT ER IT+L KCDFR
Sbjct: 212 GNVIKLSPEAEEVATFYAKMLDHEYTTKDAFNNNFFKDWRKTMTAAERETITELEKCDFR 271
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M A+F + SEERKAMSKEEK+K+K+ EA K YG IDGH++KIGNFRIEPPGLFRG
Sbjct: 272 PMAAHFQKLSEERKAMSKEEKQKLKEAKEAEMKIYGYAVIDGHRQKIGNFRIEPPGLFRG 331
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG+LK+RV+ ED+IINCSKDS++P PP GHKWKEVRHDN VTWL SWTENV GQ
Sbjct: 332 RGGHPKMGRLKKRVRPEDVIINCSKDSEIPVPPEGHKWKEVRHDNTVTWLCSWTENVLGQ 391
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYIMLNPSSK+KGEKD++K+ETAR+L ++ IR Y AD+KSKEMRIRQRAVALYFID
Sbjct: 392 NKYIMLNPSSKIKGEKDYEKFETARRLKSRVDDIRAVYTADFKSKEMRIRQRAVALYFID 451
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEKD D+ ADTVGCCSLR EHI+LHE+ D K YVV FDF GKDSIRYYN+VPV
Sbjct: 452 KLALRAGNEKDVDEVADTVGCCSLRCEHIKLHEKLDDKDYVVEFDFPGKDSIRYYNKVPV 511
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVF NL+LF+ENK DDLFDRL+T+ LN+HL LM GLT KVFRTYNASITLQQQL
Sbjct: 512 EKRVFNNLKLFMENKDPGDDLFDRLDTTTLNQHLQSLMPGLTVKVFRTYNASITLQQQLE 571
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L S E +L+YNRANR VA+LCNHQR+VPKSH+KSM NL KI K+ ++K+A+
Sbjct: 572 KLTKEGGSVQENLLSYNRANRQVAILCNHQRAVPKSHEKSMENLSAKIKAKKAELKEAKE 631
Query: 424 ALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRIS 483
L+ A+ A K K + R+KEQL +L++Q TDK+ENK IAL TSKLNYLDPRIS
Sbjct: 632 ELEKAR----GDAAKQKAKKKVERIKEQLKRLKIQRTDKDENKQIALSTSKLNYLDPRIS 687
Query: 484 VTW 486
V W
Sbjct: 688 VAW 690
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 86/113 (76%), Positives = 99/113 (87%), Gaps = 1/113 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWTENV GQ KYIMLNPSSK+KGEKD++K+ETAR+L ++ IR Y AD+KSK
Sbjct: 377 TVTWLCSWTENVLGQNKYIMLNPSSKIKGEKDYEKFETARRLKSRVDDIRAVYTADFKSK 436
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKD D+ ADTVGCCSLR EHI+LHE+ D+K
Sbjct: 437 EMRIRQRAVALYFIDKLALRAGNEKDVDEVADTVGCCSLRCEHIKLHEKLDDK 489
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KI+N+TQR KFRWAIDM DFVF
Sbjct: 700 KIFNRTQREKFRWAIDMTDEDFVF 723
>gi|27881700|gb|AAH44646.1| TOP1MT protein [Homo sapiens]
Length = 602
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/489 (65%), Positives = 389/489 (79%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ ++LS AEE+ATFY RM++HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 81 GRPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFT 140
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +S+EEK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRG
Sbjct: 141 EIHRYFVDKAAARKVLSREEKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRG 200
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE++Q
Sbjct: 201 RGDHPKMGMLKRRITPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESIQNS 260
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 261 IKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 320
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK D + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPV
Sbjct: 321 KLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPV 380
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNLQLF+ENK DDLFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL
Sbjct: 381 EKPVYKNLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLR 440
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A
Sbjct: 441 ALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARA 500
Query: 424 ALKD------AKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A+ G+S+++ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNY
Sbjct: 501 ELRRARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNY 560
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 561 LDPRISIAW 569
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE++Q +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 246 TVTWLAAWTESIQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 305
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 306 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 356
>gi|30411085|gb|AAH52285.1| Topoisomerase (DNA) I, mitochondrial [Homo sapiens]
gi|48734759|gb|AAH71914.1| Topoisomerase (DNA) I, mitochondrial [Homo sapiens]
gi|311346978|gb|ADP90414.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346992|gb|ADP90421.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346994|gb|ADP90422.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346996|gb|ADP90423.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347032|gb|ADP90441.1| mitochondrial DNA topoisomerase I [Homo sapiens]
Length = 601
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/489 (65%), Positives = 389/489 (79%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ ++LS AEE+ATFY RM++HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 80 GRPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFT 139
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +S+EEK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRG
Sbjct: 140 EIHRYFVDKAAARKVLSREEKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRG 199
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE++Q
Sbjct: 200 RGDHPKMGMLKRRITPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESIQNS 259
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 260 IKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 319
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK D + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPV
Sbjct: 320 KLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPV 379
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNLQLF+ENK DDLFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL
Sbjct: 380 EKPVYKNLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLR 439
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A
Sbjct: 440 ALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARA 499
Query: 424 ALKD------AKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A+ G+S+++ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNY
Sbjct: 500 ELRRARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNY 559
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 560 LDPRISIAW 568
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE++Q +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 245 TVTWLAAWTESIQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 304
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 305 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 355
>gi|119596403|gb|EAW75997.1| topoisomerase (DNA) I, isoform CRA_c [Homo sapiens]
Length = 715
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/487 (68%), Positives = 379/487 (77%), Gaps = 45/487 (9%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 244 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 303
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 304 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 363
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 364 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 423
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 424 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 483
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 484 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 543
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 544 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 603
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+
Sbjct: 604 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQ--------------- 648
Query: 424 ALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRIS 483
KLEVQ TD+EENK IALGTSKLNYLDPRI+
Sbjct: 649 -----------------------------TKLEVQATDREENKQIALGTSKLNYLDPRIT 679
Query: 484 VTWLASW 490
V W W
Sbjct: 680 VAWCKKW 686
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 410 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 469
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 470 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 519
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 692 KIYNKTQREKFAWAIDMADEDYEF 715
>gi|311346980|gb|ADP90415.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346988|gb|ADP90419.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311346998|gb|ADP90424.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347012|gb|ADP90431.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347014|gb|ADP90432.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347026|gb|ADP90438.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347044|gb|ADP90447.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347048|gb|ADP90449.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347050|gb|ADP90450.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347054|gb|ADP90452.1| mitochondrial DNA topoisomerase I [Homo sapiens]
gi|311347056|gb|ADP90453.1| mitochondrial DNA topoisomerase I [Homo sapiens]
Length = 601
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/489 (65%), Positives = 389/489 (79%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ ++LS AEE+ATFY RM++HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 80 GRPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFT 139
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +S+EEK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRG
Sbjct: 140 EIHRYFVDKAAARKVLSREEKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRG 199
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ
Sbjct: 200 RGDHPKMGMLKRRITPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNS 259
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 260 IKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 319
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK D + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPV
Sbjct: 320 KLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPV 379
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNLQLF+ENK DDLFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL
Sbjct: 380 EKPVYKNLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLR 439
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A
Sbjct: 440 ALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARA 499
Query: 424 ALKD------AKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A+ G+S+++ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNY
Sbjct: 500 ELRRARAEHKAQGDGKSRSVLEKKRWLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNY 559
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 560 LDPRISIAW 568
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 245 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 304
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 305 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 355
>gi|444729226|gb|ELW69653.1| DNA topoisomerase 1 [Tupaia chinensis]
Length = 730
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/493 (67%), Positives = 388/493 (78%), Gaps = 30/493 (6%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 232 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 291
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 292 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 351
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 352 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 411
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 412 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 471
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 472 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 531
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKR T +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 532 EKR-----------------------TGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 568
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 569 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARR 628
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 629 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 688
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 689 LDPRITVAWCKKW 701
Score = 189 bits (479), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 398 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 457
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 458 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 507
Score = 42.0 bits (97), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 707 KIYNKTQREKFAWAIDMADEDYEF 730
>gi|332263523|ref|XP_003280801.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 1 [Nomascus
leucogenys]
Length = 601
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/493 (64%), Positives = 386/493 (78%), Gaps = 15/493 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS AEE+ATFY RM++HEYTTKE F NF DWRK MT +ER VI L KCDF
Sbjct: 80 GKPVRLSVAAEEVATFYGRMLDHEYTTKEVFQKNFFNDWRKEMTVEEREVIKSLDKCDFT 139
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +++EEK+K+K E E + +E+G C +DGH+EKIGNF+IEPPGLFRG
Sbjct: 140 EIHRYFVDKAAARKVLTREEKQKLKGEAEKLQQEFGYCILDGHREKIGNFKIEPPGLFRG 199
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HP+MG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ
Sbjct: 200 RGDHPRMGMLKRRITPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNS 259
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNP SKLKGEK WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 260 IKYIMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 319
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK D + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPV
Sbjct: 320 KLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPV 379
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNLQLF+ENK DDLFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL
Sbjct: 380 EKPVYKNLQLFMENKDPQDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLR 439
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV----- 418
L + S A KIL+YNRANR VA+LCNHQR P + +KSM NL+ KI K++QV
Sbjct: 440 ALTRAEDSIAAKILSYNRANRVVAILCNHQRVTPSTFEKSMQNLQTKIQAKKEQVAEARA 499
Query: 419 -----KDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTS 473
+ +A DAK S+++ +KK+ L +L+EQL L VQ TDKEENK +ALGTS
Sbjct: 500 ELRRARAEHKAQGDAK----SRSVLEKKRRLLEKLQEQLAGLSVQATDKEENKQVALGTS 555
Query: 474 KLNYLDPRISVTW 486
KLNYLDPRIS+ W
Sbjct: 556 KLNYLDPRISIAW 568
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 96/111 (86%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGEK WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 245 TVTWLAAWTESVQNSIKYIMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYRADWKSR 304
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 305 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 355
>gi|449281112|gb|EMC88275.1| DNA topoisomerase I, mitochondrial [Columba livia]
Length = 593
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/489 (68%), Positives = 405/489 (82%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS EEIATFYA+M++HEYTTKE F NF DWRK MT E+ +ITDL KCDF
Sbjct: 72 GKPLKLSLATEEIATFYAKMLDHEYTTKEIFQNNFFNDWRKEMTLMEQKIITDLDKCDFS 131
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV KSE RKA+SKEEK+K+K+E + I +EYG C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 132 EIHKYFVDKSEARKALSKEEKQKLKEEADKIQEEYGYCILDGHREKIGNFKTEPPGLFRG 191
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LK+R+ ED+IINCSK+SK+P PP GHKWKEVR DN VTWLASWTEN+Q
Sbjct: 192 RGDHPKMGMLKKRIMPEDVIINCSKNSKIPKPPEGHKWKEVRFDNTVTWLASWTENIQNT 251
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSSKLKGEKDW KYE AR+L + KIR Y+ADWKSKEM+ RQRAVALYFID
Sbjct: 252 LKYIMLNPSSKLKGEKDWHKYEVARRLKDVVQKIRAQYRADWKSKEMKNRQRAVALYFID 311
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+LH E DG+ +VV FDFLGKDSIRYYN+V V
Sbjct: 312 KLALRAGNEKEEGETADTVGCCSLRVEHIKLHRELDGQEHVVEFDFLGKDSIRYYNKVSV 371
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK VFKNL++F++NK +DDLFD+L+T +LNKHL +LM+GLTAKVFRTYNASITLQ+QL
Sbjct: 372 EKPVFKNLKMFMKNKDPADDLFDQLSTCILNKHLQKLMDGLTAKVFRTYNASITLQEQLK 431
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L +PD + A K+L+YNRANRAVA+LCNHQRS+PK+ +KSM NL+ KI K++QV++A++
Sbjct: 432 ALTNPDDNVAGKLLSYNRANRAVAILCNHQRSIPKTFEKSMQNLQAKIDAKKQQVEEAKQ 491
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK+A+ K ++KA +KKK L RL+EQL KL VQ TDKEENK IALGTSKLNY
Sbjct: 492 ELKNAEDEFKDTKDDKAKANVEKKKKLLKRLEEQLAKLNVQATDKEENKQIALGTSKLNY 551
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 552 LDPRISIAW 560
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/111 (77%), Positives = 96/111 (86%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+Q +KYIMLNPSSKLKGEKDW KYE AR+L + KIR Y+ADWKSK
Sbjct: 237 TVTWLASWTENIQNTLKYIMLNPSSKLKGEKDWHKYEVARRLKDVVQKIRAQYRADWKSK 296
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+LH E D
Sbjct: 297 EMKNRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLHRELD 347
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA DF F
Sbjct: 570 KIYNKTQREKFAWAIDMADEDFEF 593
>gi|395512779|ref|XP_003760611.1| PREDICTED: DNA topoisomerase I, mitochondrial [Sarcophilus
harrisii]
Length = 834
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/489 (67%), Positives = 400/489 (81%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS EEIATFY +M++HEYTTKE F NF DWRK MT +E+ +I L+KCDF
Sbjct: 313 GKAMKLSLATEEIATFYGKMLDHEYTTKEVFQNNFFNDWRKEMTVEEKKIIKHLNKCDFT 372
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+E RKA+ KEEK+K+K+E E + + +G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 373 EIHKYFVDKNEARKALPKEEKQKLKEEAERLQEAFGYCILDGHREKIGNFKTEPPGLFRG 432
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LK+R+ ED+IINCS+DSK+P PPPGHKWKEVR DN VTWLASWTEN+Q
Sbjct: 433 RGDHPKMGMLKKRIMPEDVIINCSRDSKIPEPPPGHKWKEVRFDNTVTWLASWTENIQNS 492
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSSKLKGEKDWQKYE AR+L + ++KIR Y+ DWKS+EM+ RQRAVALYFID
Sbjct: 493 IKYIMLNPSSKLKGEKDWQKYEVARRLKEVVDKIRFQYRFDWKSREMKKRQRAVALYFID 552
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHIQLH E DG+ ++V FDFLGKDSIRYYN+VPV
Sbjct: 553 KLALRAGNEKEEGETADTVGCCSLRVEHIQLHRELDGQEHIVEFDFLGKDSIRYYNKVPV 612
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK VFKNLQLF+ENK D+LFDRL TS LNKHL +LM+GLTAKVFRTYNASITLQ+QL
Sbjct: 613 EKPVFKNLQLFMENKDPGDELFDRLTTSTLNKHLQDLMDGLTAKVFRTYNASITLQEQLK 672
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + + + A KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ A++
Sbjct: 673 VLTNAEDNVAAKILSYNRANRAVAILCNHQRATPKTFEKSMQNLQTKIDAKKEQLAVAKQ 732
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K+ +SK+ DKKK L +L+EQL++L Q TDKEENK +ALGTSKLNY
Sbjct: 733 ELKRAKADAKVRKSVKSKSNVDKKKKLLAKLEEQLMRLCTQATDKEENKQVALGTSKLNY 792
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 793 LDPRISIAW 801
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/111 (77%), Positives = 98/111 (88%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+Q +KYIMLNPSSKLKGEKDWQKYE AR+L + ++KIR Y+ DWKS+
Sbjct: 478 TVTWLASWTENIQNSIKYIMLNPSSKLKGEKDWQKYEVARRLKEVVDKIRFQYRFDWKSR 537
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHIQLH E D
Sbjct: 538 EMKKRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIQLHRELD 588
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA +F F
Sbjct: 811 KIYNKTQREKFAWAIDMADEEFEF 834
>gi|426360896|ref|XP_004047664.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 1 [Gorilla
gorilla gorilla]
Length = 601
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/489 (65%), Positives = 386/489 (78%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS AEE+ATFY RM++HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 80 GKPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFT 139
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +S+EEK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRG
Sbjct: 140 EIHRYFVDKAAARKVLSREEKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRG 199
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ
Sbjct: 200 RGNHPKMGMLKRRIMPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNS 259
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 260 IKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 319
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK D + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPV
Sbjct: 320 KLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPV 379
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNLQLF+ENK DDLFDRL T LNKHL ELM+GLTAKVFRTYNASITLQ+QL
Sbjct: 380 EKPVYKNLQLFMENKDPRDDLFDRLTTISLNKHLQELMDGLTAKVFRTYNASITLQEQLR 439
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANR VA+LCNHQR+ P +KSM NL+ KI K++QV +A
Sbjct: 440 ALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSMFEKSMQNLQTKIQAKKEQVAEARA 499
Query: 424 ALKD------AKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A+ G+S+++ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNY
Sbjct: 500 ELRRARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNY 559
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 560 LDPRISIAW 568
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 245 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 304
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 305 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 355
>gi|163838768|ref|NP_001106268.1| DNA topoisomerase I, mitochondrial [Pan troglodytes]
gi|259533973|sp|A9Q1D5.1|TOP1M_PANTR RecName: Full=DNA topoisomerase I, mitochondrial; Short=TOP1mt;
Flags: Precursor
gi|145309115|gb|ABP57788.1| mitochondrial topoisomerase I [Pan troglodytes]
gi|410218816|gb|JAA06627.1| topoisomerase (DNA) I, mitochondrial [Pan troglodytes]
gi|410252832|gb|JAA14383.1| topoisomerase (DNA) I, mitochondrial [Pan troglodytes]
Length = 601
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/489 (65%), Positives = 388/489 (79%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS AEE+ATFY RM+ HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 80 GKPVRLSVAAEEVATFYGRMLGHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFT 139
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +S+EEK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRG
Sbjct: 140 EIHRYFVDKAAARKVLSREEKQKLKEEAEKLQREFGYCILDGHQEKIGNFKIEPPGLFRG 199
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ
Sbjct: 200 RGDHPKMGMLKRRIMPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNS 259
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 260 IKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 319
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK D + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPV
Sbjct: 320 KLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPV 379
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNLQLF+E+K D+LFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL
Sbjct: 380 EKPVYKNLQLFMESKGPRDNLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLR 439
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A
Sbjct: 440 ALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARA 499
Query: 424 ALKD------AKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A+ G+S+++ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNY
Sbjct: 500 ELRRARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNY 559
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 560 LDPRISIAW 568
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 245 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 304
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 305 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 355
>gi|345313087|ref|XP_001519186.2| PREDICTED: DNA topoisomerase I, mitochondrial-like, partial
[Ornithorhynchus anatinus]
Length = 1043
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/491 (67%), Positives = 397/491 (80%), Gaps = 11/491 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS EEIATFY +M++HEYTTK+ F NF DWRK MT +E+ I L +CDF
Sbjct: 522 GKPMKLSLVTEEIATFYGKMLDHEYTTKDIFQNNFFSDWRKEMTPEEQKTIKCLEECDFT 581
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+E RKA+ KEEK+K+K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 582 EIHKYFVDKNEARKALPKEEKQKLKEEAEKLQEEFGYCILDGHREKIGNFKTEPPGLFRG 641
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LK+R+ ED+IINCSKDSK+P PP GHKWKEVR DN VTWLASWTEN+Q
Sbjct: 642 RGDHPKMGLLKKRIMPEDVIINCSKDSKIPEPPSGHKWKEVRFDNTVTWLASWTENIQNS 701
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSSKLKGEKDWQKYE AR+L ++KIR Y+ADWKSKEM+ RQRAVALYFID
Sbjct: 702 IKYIMLNPSSKLKGEKDWQKYELARRLKGVVDKIRAQYRADWKSKEMKKRQRAVALYFID 761
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHIQLH E DG+ +VV FDFLGKDSIRYYN+VPV
Sbjct: 762 KLALRAGNEKEEGETADTVGCCSLRVEHIQLHREMDGQEHVVEFDFLGKDSIRYYNKVPV 821
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK+V+KNL+LF++NK DDLFDRL+T+ LNKHL +LM+GLTAKVFRTYNASITLQ+QL
Sbjct: 822 EKQVYKNLRLFMQNKDPGDDLFDRLSTTSLNKHLQDLMDGLTAKVFRTYNASITLQEQLK 881
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L D + + A KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ +A
Sbjct: 882 ALTDAEDNVAAKILSYNRANRAVAILCNHQRATPKTFEKSMQNLQAKIDAKKEQLDEAVT 941
Query: 424 ALKDAKKAGESKAMTD--------KKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
LK AK + KA D KKK L +++EQL+KL VQ TDKEENK IALGTSKL
Sbjct: 942 ELKRAK--ADHKAKKDIKSKSNLEKKKKLLQKIEEQLMKLSVQATDKEENKQIALGTSKL 999
Query: 476 NYLDPRISVTW 486
NYLDPRISV W
Sbjct: 1000 NYLDPRISVAW 1010
Score = 188 bits (478), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 88/111 (79%), Positives = 98/111 (88%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+Q +KYIMLNPSSKLKGEKDWQKYE AR+L ++KIR Y+ADWKSK
Sbjct: 687 TVTWLASWTENIQNSIKYIMLNPSSKLKGEKDWQKYELARRLKGVVDKIRAQYRADWKSK 746
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHIQLH E D
Sbjct: 747 EMKKRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIQLHREMD 797
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA DF F
Sbjct: 1020 KIYNKTQREKFAWAIDMADEDFEF 1043
>gi|335286080|ref|XP_003355015.1| PREDICTED: DNA topoisomerase I, mitochondrial-like [Sus scrofa]
Length = 1114
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/489 (64%), Positives = 389/489 (79%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATFY +M+EHEYTTKE F NF +DWRK MT ER VI LSKCDF
Sbjct: 593 GKPMKLSLAAEEVATFYGKMLEHEYTTKEVFRHNFFRDWRKEMTAAERKVIKRLSKCDFT 652
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H +F ++ R+A+ +EEK+++K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 653 EIHRHFADRAAARRALPREEKQRLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRG 712
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV ED+ INC +DSKVP PP GH+WKEVR D VTWLA+WTENVQ
Sbjct: 713 RGDHPKMGMLKRRVLPEDVTINCGRDSKVPEPPAGHQWKEVRSDRTVTWLAAWTENVQNA 772
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+MLNPSSKLKGE+DW+KYE AR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 773 TKYVMLNPSSKLKGERDWEKYEVARRLKGVVDEIRSRYRADWKSREMKARQRAVALYFID 832
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEH+QLH E DG PYVV FDFLGKDSIRYYN+VPV
Sbjct: 833 KLALRAGNEKEEGESADTVGCCSLRVEHVQLHPEADGCPYVVEFDFLGKDSIRYYNKVPV 892
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V++NLQLF+ENK ++LFDRL T+ LNKHL +LM+GLTAKVFRTYNASITLQ QL
Sbjct: 893 EKPVYRNLQLFLENKDPGEELFDRLTTASLNKHLQDLMDGLTAKVFRTYNASITLQGQLR 952
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A K+L+YNRANRAVAVLCNHQR+ PK+ +KSM L+ KI K++QV +A+
Sbjct: 953 ALTRAEDSIAAKLLSYNRANRAVAVLCNHQRAPPKTFEKSMQALRSKIEAKKQQVAEAKA 1012
Query: 424 ALKDAKKA------GESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A+ G S+A +K++ L +L+EQL++L Q TDKEE K +ALGTSKLNY
Sbjct: 1013 ELEKARAGHASREDGRSEAFLEKRRRRLEKLEEQLVRLGTQATDKEEGKQVALGTSKLNY 1072
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 1073 LDPRISIAW 1081
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 97/111 (87%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTENVQ KY+MLNPSSKLKGE+DW+KYE AR+L +++IR Y+ADWKS+
Sbjct: 758 TVTWLAAWTENVQNATKYVMLNPSSKLKGERDWEKYEVARRLKGVVDEIRSRYRADWKSR 817
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEH+QLH E D
Sbjct: 818 EMKARQRAVALYFIDKLALRAGNEKEEGESADTVGCCSLRVEHVQLHPEAD 868
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WA+DMA DF F
Sbjct: 1091 KIYNKTQREKFAWALDMAGEDFEF 1114
>gi|350582870|ref|XP_003125998.3| PREDICTED: DNA topoisomerase I, mitochondrial [Sus scrofa]
Length = 542
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/489 (64%), Positives = 389/489 (79%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATFY +M+EHEYTTKE F NF +DWRK MT ER VI LSKCDF
Sbjct: 21 GKPMKLSLAAEEVATFYGKMLEHEYTTKEVFRHNFFRDWRKEMTAAERKVIKRLSKCDFT 80
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H +F ++ R+A+ +EEK+++K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 81 EIHRHFADRAAARRALPREEKQRLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRG 140
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV ED+ INC +DSKVP PP GH+WKEVR D VTWLA+WTENVQ
Sbjct: 141 RGDHPKMGMLKRRVLPEDVTINCGRDSKVPEPPAGHQWKEVRSDRTVTWLAAWTENVQNA 200
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+MLNPSSKLKGE+DW+KYE AR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 201 TKYVMLNPSSKLKGERDWEKYEVARRLKGVVDEIRSRYRADWKSREMKARQRAVALYFID 260
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEH+QLH E DG PYVV FDFLGKDSIRYYN+VPV
Sbjct: 261 KLALRAGNEKEEGESADTVGCCSLRVEHVQLHPEADGCPYVVEFDFLGKDSIRYYNKVPV 320
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V++NLQLF+ENK ++LFDRL T+ LNKHL +LM+GLTAKVFRTYNASITLQ QL
Sbjct: 321 EKPVYRNLQLFLENKDPGEELFDRLTTASLNKHLQDLMDGLTAKVFRTYNASITLQGQLR 380
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A K+L+YNRANRAVAVLCNHQR+ PK+ +KSM L+ KI K++QV +A+
Sbjct: 381 ALTRAEDSIAAKLLSYNRANRAVAVLCNHQRAPPKTFEKSMQALRSKIEAKKQQVAEAKA 440
Query: 424 ALKDAKKA------GESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A+ G S+A +K++ L +L+EQL++L Q TDKEE K +ALGTSKLNY
Sbjct: 441 ELEKARAGHASREDGRSEAFLEKRRRRLEKLEEQLVRLGTQATDKEEGKQVALGTSKLNY 500
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 501 LDPRISIAW 509
Score = 181 bits (460), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 97/111 (87%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTENVQ KY+MLNPSSKLKGE+DW+KYE AR+L +++IR Y+ADWKS+
Sbjct: 186 TVTWLAAWTENVQNATKYVMLNPSSKLKGERDWEKYEVARRLKGVVDEIRSRYRADWKSR 245
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEH+QLH E D
Sbjct: 246 EMKARQRAVALYFIDKLALRAGNEKEEGESADTVGCCSLRVEHVQLHPEAD 296
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WA+DMA DF F
Sbjct: 519 KIYNKTQREKFAWALDMAGEDFEF 542
>gi|355698261|gb|EHH28809.1| DNA topoisomerase I, mitochondrial [Macaca mulatta]
Length = 625
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/507 (62%), Positives = 389/507 (76%), Gaps = 25/507 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK M+LS AEE+ATFY RM++HEYTTKE F NF DWRK MT +ER VI L KCDF
Sbjct: 86 GKPMRLSVKAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMTVEEREVIKSLDKCDFT 145
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +++EEK+K+K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 146 EIHRYFVDKAAARKVLTREEKQKLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRG 205
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV ED++INCS+DSK+P PP GH+WKEVR DN V WLA+WTE++Q
Sbjct: 206 RGDHPKMGMLKRRVMPEDVVINCSRDSKIPRPPAGHQWKEVRSDNTVMWLAAWTESIQNS 265
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+MLNP SKLKGEK WQK+ETAR+L +++IR YQADWKS+EM+ RQRAVALYFID
Sbjct: 266 IKYVMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYQADWKSQEMKTRQRAVALYFID 325
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEKD+ + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKDSIRYYN VPV
Sbjct: 326 KLALRAGNEKDDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDSIRYYNRVPV 385
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLN------------------TSVLNKHLSELMEGLT 345
EK V+KNLQLF++NK DDLFDRL T+ LNKHL ELM+GLT
Sbjct: 386 EKPVYKNLQLFMKNKDPQDDLFDRLTVSRLVFPQQWAVAGPGERTTSLNKHLHELMDGLT 445
Query: 346 AKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMG 405
AKVFRTYNAS+TLQ+QL L + S A KIL+YNRANRAVA+LCNHQR+ + +KSM
Sbjct: 446 AKVFRTYNASVTLQEQLRALTRAEDSIAAKILSYNRANRAVAILCNHQRATSSTFEKSMQ 505
Query: 406 NLKEKISNKRKQVKDAERALKDAKKA------GESKAMTDKKKTALGRLKEQLLKLEVQE 459
NL+ KI K++QV +A L+ A+ G+S+++ +KK+ L +L+EQL L VQ
Sbjct: 506 NLQTKIQVKKEQVAEARAELRKARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAWLSVQA 565
Query: 460 TDKEENKTIALGTSKLNYLDPRISVTW 486
TDKEENK +AL TSKLNYLDPRIS+ W
Sbjct: 566 TDKEENKQVALSTSKLNYLDPRISIAW 592
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 96/111 (86%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA+WTE++Q +KY+MLNP SKLKGEK WQK+ETAR+L +++IR YQADWKS+
Sbjct: 251 TVMWLAAWTESIQNSIKYVMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYQADWKSQ 310
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEKD+ + ADTVGCCSLRVEH+QLH E D
Sbjct: 311 EMKTRQRAVALYFIDKLALRAGNEKDDGEAADTVGCCSLRVEHVQLHPEAD 361
>gi|327278452|ref|XP_003223976.1| PREDICTED: DNA topoisomerase I, mitochondrial-like, partial [Anolis
carolinensis]
Length = 560
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/489 (68%), Positives = 394/489 (80%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYT K F NF DW K MT ER ITDL KCDFR
Sbjct: 39 GKPMKLSPAAEEVATFFAKMLKHEYTKKAVFRRNFFNDWTKEMTPGERRKITDLQKCDFR 98
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV+KSE +KA++KEEKKK+K E E I +EYG C IDGH+EKIGNF+ EPPGLFRG
Sbjct: 99 EIHQYFVEKSEAQKALTKEEKKKLKAEAERIQEEYGYCIIDGHREKIGNFKTEPPGLFRG 158
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LK+R+Q ED+IINCS+DSK+P PP GHKWKEVR DN VTWLASW EN+QG
Sbjct: 159 RGDHPKMGMLKKRIQPEDVIINCSRDSKIPCPPRGHKWKEVRSDNTVTWLASWMENIQGA 218
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+MLNPSSKLKGEKDWQKYE AR L + KIR Y+ADWKSK+M+ RQ +VALYFID
Sbjct: 219 IKYVMLNPSSKLKGEKDWQKYEVARHLKGVVKKIRTRYRADWKSKDMKKRQISVALYFID 278
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
+LALRAGNEK++ + ADTVGCCSLRVEHI LH GK VV FDFLGKD IRYYN+VPV
Sbjct: 279 RLALRAGNEKEKGETADTVGCCSLRVEHITLHPRLGGKGNVVEFDFLGKDCIRYYNQVPV 338
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK+VFKNLQLF+ENK D LFDRL+T+ LNKHL +LM+GLTAKVFRTYNASITLQ+QL+
Sbjct: 339 EKQVFKNLQLFMENKDPRDCLFDRLSTTSLNKHLQDLMDGLTAKVFRTYNASITLQEQLD 398
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL S A K+L+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K Q++DAE+
Sbjct: 399 ELTKEKDSVAAKLLSYNRANRAVAILCNHQRATPKTFEKSMKNLQAKIDCKIDQLQDAEK 458
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK A+ K +SKA +KKK + +++EQL KL++Q TDKEENK IALGTSKLNY
Sbjct: 459 ELKRAQAECRAKKDAKSKAALEKKKQRIEKIEEQLAKLDMQATDKEENKQIALGTSKLNY 518
Query: 478 LDPRISVTW 486
LDPRISV W
Sbjct: 519 LDPRISVAW 527
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/107 (73%), Positives = 92/107 (85%), Gaps = 1/107 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW EN+QG +KY+MLNPSSKLKGEKDWQKYE AR L + KIR Y+ADWKSK
Sbjct: 204 TVTWLASWMENIQGAIKYVMLNPSSKLKGEKDWQKYEVARHLKGVVKKIRTRYRADWKSK 263
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLH 588
+M+ RQ +VALYFID+LALRAGNEK++ + ADTVGCCSLRVEHI LH
Sbjct: 264 DMKKRQISVALYFIDRLALRAGNEKEKGETADTVGCCSLRVEHITLH 310
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAI MA DF F
Sbjct: 537 KIYNKTQREKFAWAIAMADEDFEF 560
>gi|402879307|ref|XP_003903287.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 1 [Papio
anubis]
Length = 600
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/489 (64%), Positives = 385/489 (78%), Gaps = 8/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK M+LS AEE+ATFY RM++HEYTTKE F NF DWRK MT +ER VI L KCDF
Sbjct: 80 GKPMRLSVKAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMTVEEREVIKSLDKCDFT 139
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +++EEK+K+K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 140 EIHRYFVDKAAARKVLTREEKQKLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRG 199
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRRV ED++INCS+DS +P PP GH+WKEVR DN V WLA+WTE++Q
Sbjct: 200 RGNHPKMGMLKRRVMPEDVVINCSRDS-IPKPPAGHQWKEVRSDNTVMWLAAWTESIQNS 258
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+MLNP SKLKGEK WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 259 IKYVMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYRADWKSQEMKTRQRAVALYFID 318
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK D + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKDSIRY N VPV
Sbjct: 319 KLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDSIRYNNRVPV 378
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNL+LF++NK DDLFDRL T+ LNKHL ELM+GLTAKVFRTYNAS+TLQ+QL
Sbjct: 379 EKPVYKNLELFMKNKDPQDDLFDRLTTTSLNKHLHELMDGLTAKVFRTYNASVTLQEQLR 438
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANRAVA+LCNHQR+ + +KSM NL+ KI K++QV +A
Sbjct: 439 ALTRAEDSIAAKILSYNRANRAVAILCNHQRATSSTFEKSMQNLQTKIQVKKEQVAEARA 498
Query: 424 ALKDA----KKAGE--SKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A K G+ S+++ +KK+ L +L+EQL L VQ TDKEENK +AL TSKLNY
Sbjct: 499 ELRKARAEHKAQGDDKSRSVLEKKRRLLEKLQEQLAWLSVQATDKEENKQVALSTSKLNY 558
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 559 LDPRISIAW 567
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA+WTE++Q +KY+MLNP SKLKGEK WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 244 TVMWLAAWTESIQNSIKYVMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYRADWKSQ 303
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 304 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 354
>gi|326676003|ref|XP_002665372.2| PREDICTED: DNA topoisomerase 1 [Danio rerio]
Length = 735
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/491 (65%), Positives = 386/491 (78%), Gaps = 11/491 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ +KLS AEE+A ++A+M++HEYTTKE F NF KDWRK MT +ER +I DL KCDF
Sbjct: 214 GEPVKLSLPAEEVALYFAQMLDHEYTTKEVFRNNFFKDWRKEMTLEERQLIMDLKKCDFG 273
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++HA +K E RK +SKEEK K+ N+ I EYG C +D H+E+IGNF+IEPPGLFRG
Sbjct: 274 ELHAMHKEKVEARKNLSKEEKLVNKEANQKIVDEYGFCVLDHHRERIGNFKIEPPGLFRG 333
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPK G LK+R++ ED+IINCSK+S++P P GHKWKEVRHD VTWLASWTENVQG
Sbjct: 334 RGDHPKQGMLKKRIRPEDVIINCSKESRIPEAPAGHKWKEVRHDKTVTWLASWTENVQGS 393
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+MLN +SKLKGEKDW+KYE ARKL ++ IR YQ D KSK+M RQRAVALYFID
Sbjct: 394 CKYVMLNANSKLKGEKDWEKYEVARKLKTCVDAIRTQYQEDLKSKQMGTRQRAVALYFID 453
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH+ D + VV FDFLGKD IRYYN+VPV
Sbjct: 454 KLALRAGNEKEEGETADTVGCCSLRVEHITLHDALDDQKCVVEFDFLGKDCIRYYNKVPV 513
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
KRVFKNL+LF+ENK+G DDLFDRLNT+ LNKHLS LM GLTAKVFRTYNASITLQQQL
Sbjct: 514 TKRVFKNLKLFMENKQGGDDLFDRLNTASLNKHLSSLMPGLTAKVFRTYNASITLQQQLK 573
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL + + EK+L+YNRANRAVAVLCNHQR+ PKS D+SM NL+ KI ++++Q+ A++
Sbjct: 574 ELSNMKDNVPEKLLSYNRANRAVAVLCNHQRAPPKSFDQSMANLQAKIDSRKEQLDLAKK 633
Query: 424 ALKDAKKAGESKAMTDKKKTALG--------RLKEQLLKLEVQETDKEENKTIALGTSKL 475
LK AKK E+K +D K + R +EQLLK+EVQ TD+EENK IAL TSKL
Sbjct: 634 ELKQAKK--EAKGSSDNKLLVVVEKKKKAVQRCEEQLLKMEVQATDREENKQIALSTSKL 691
Query: 476 NYLDPRISVTW 486
NYLDPRISV W
Sbjct: 692 NYLDPRISVAW 702
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 83/114 (72%), Positives = 95/114 (83%), Gaps = 1/114 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTENVQG KY+MLN +SKLKGEKDW+KYE ARKL ++ IR YQ D KSK
Sbjct: 379 TVTWLASWTENVQGSCKYVMLNANSKLKGEKDWEKYEVARKLKTCVDAIRTQYQEDLKSK 438
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDEKK 595
+M RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH+ D++K
Sbjct: 439 QMGTRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHITLHDALDDQK 492
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKT R KF WA+DM DFVF
Sbjct: 712 KIYNKTLRDKFAWAVDMTELDFVF 735
>gi|402879309|ref|XP_003903288.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 2 [Papio
anubis]
Length = 614
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/489 (64%), Positives = 385/489 (78%), Gaps = 8/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK M+LS AEE+ATFY RM++HEYTTKE F NF DWRK MT +ER VI L KCDF
Sbjct: 94 GKPMRLSVKAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMTVEEREVIKSLDKCDFT 153
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +++EEK+K+K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 154 EIHRYFVDKAAARKVLTREEKQKLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRG 213
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRRV ED++INCS+DS +P PP GH+WKEVR DN V WLA+WTE++Q
Sbjct: 214 RGNHPKMGMLKRRVMPEDVVINCSRDS-IPKPPAGHQWKEVRSDNTVMWLAAWTESIQNS 272
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+MLNP SKLKGEK WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 273 IKYVMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYRADWKSQEMKTRQRAVALYFID 332
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK D + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKDSIRY N VPV
Sbjct: 333 KLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDSIRYNNRVPV 392
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNL+LF++NK DDLFDRL T+ LNKHL ELM+GLTAKVFRTYNAS+TLQ+QL
Sbjct: 393 EKPVYKNLELFMKNKDPQDDLFDRLTTTSLNKHLHELMDGLTAKVFRTYNASVTLQEQLR 452
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANRAVA+LCNHQR+ + +KSM NL+ KI K++QV +A
Sbjct: 453 ALTRAEDSIAAKILSYNRANRAVAILCNHQRATSSTFEKSMQNLQTKIQVKKEQVAEARA 512
Query: 424 ALKDA----KKAGE--SKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A K G+ S+++ +KK+ L +L+EQL L VQ TDKEENK +AL TSKLNY
Sbjct: 513 ELRKARAEHKAQGDDKSRSVLEKKRRLLEKLQEQLAWLSVQATDKEENKQVALSTSKLNY 572
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 573 LDPRISIAW 581
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/111 (71%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA+WTE++Q +KY+MLNP SKLKGEK WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 258 TVMWLAAWTESIQNSIKYVMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYRADWKSQ 317
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 318 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 368
>gi|147906312|ref|NP_001089537.1| topoisomerase (DNA) I, gene 2 [Xenopus laevis]
gi|66910831|gb|AAH97824.1| MGC115546 protein [Xenopus laevis]
Length = 503
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/478 (68%), Positives = 383/478 (80%), Gaps = 13/478 (2%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKE 83
M++HEYTTKE F NF DWRK MT +E+ VITDL KCDF +M Y+ K EE+K SKE
Sbjct: 1 MLDHEYTTKEIFRNNFFVDWRKEMTLEEKMVITDLDKCDFTEMFTYYKGKMEEKKNKSKE 60
Query: 84 EKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
+K KIK+ENE + +EYG C +D H+EKIGNF+IEPP LFRGRG+HPK G LK+R+ EDI
Sbjct: 61 DKLKIKEENEKLLEEYGYCAMDHHREKIGNFKIEPPALFRGRGDHPKQGMLKKRILPEDI 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ 203
IINCSKDSK+P PPPGHKWKEVRHDN VTWLASWTENVQG VKYIMLN +SKLKGEKDW+
Sbjct: 121 IINCSKDSKIPEPPPGHKWKEVRHDNTVTWLASWTENVQGSVKYIMLNANSKLKGEKDWE 180
Query: 204 KYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDE-DQADTV 262
KYE ARKL KIR+ Y+ ++KSKEM++RQRAVALYFIDKLALRAGNEK+E + ADTV
Sbjct: 181 KYEIARKLKHHAEKIRKTYRENFKSKEMKVRQRAVALYFIDKLALRAGNEKEEGESADTV 240
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSD 322
GCCSLRVEHI+L+ E DG+ +VV FDFLGKDSIRYYN+VPVEK+VFKNLQLF+ENK+ D
Sbjct: 241 GCCSLRVEHIKLYPELDGEKHVVEFDFLGKDSIRYYNKVPVEKQVFKNLQLFMENKEEGD 300
Query: 323 DLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRA 382
DLFDRLNT +LNKHL LMEGLTAKVFRTYNASITLQQQL EL DP+ S KIL+YNRA
Sbjct: 301 DLFDRLNTPLLNKHLQSLMEGLTAKVFRTYNASITLQQQLQELTDPEESIPAKILSYNRA 360
Query: 383 NRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV---------KDAERALKDAKKAGE 433
NRAVA+LCNHQR+ PK+ D+SM NLK KI K++Q+ E KD++K +
Sbjct: 361 NRAVAILCNHQRAPPKTFDQSMANLKSKIDAKKEQILLAKKELKEAKKEAKEKDSEKLNK 420
Query: 434 SKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWT 491
+ + KK A+ R +EQL+++EVQ TD+EENK IAL TSKLNYLDPRISV W WT
Sbjct: 421 ---VVESKKRAVQRTEEQLMRMEVQATDREENKQIALSTSKLNYLDPRISVAWCKKWT 475
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 85/114 (74%), Positives = 99/114 (86%), Gaps = 1/114 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTENVQG VKYIMLN +SKLKGEKDW+KYE ARKL KIR+ Y+ ++KSK
Sbjct: 147 TVTWLASWTENVQGSVKYIMLNANSKLKGEKDWEKYEIARKLKHHAEKIRKTYRENFKSK 206
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDEKK 595
EM++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E D +K
Sbjct: 207 EMKVRQRAVALYFIDKLALRAGNEKEEGESADTVGCCSLRVEHIKLYPELDGEK 260
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKT R KF WAIDM DF+F
Sbjct: 480 KIYNKTYRDKFAWAIDMTETDFIF 503
>gi|449495298|ref|XP_002187114.2| PREDICTED: DNA topoisomerase I, mitochondrial [Taeniopygia guttata]
Length = 548
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/489 (66%), Positives = 397/489 (81%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS EEIATFYA+M+ HEYTTKE F NF DWRK MT +E+ +I +L KCDF
Sbjct: 27 GKPLKLSLATEEIATFYAKMLNHEYTTKEIFQNNFFHDWRKEMTSEEQEIIKELDKCDFG 86
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV+K+E RK + KEEK+K+K+E + I +EYG C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 87 EIHRYFVEKNEARKGLPKEEKQKLKEEADKIQEEYGYCILDGHREKIGNFKTEPPGLFRG 146
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG LK+R+ ED+IINCSKDSK+P PP GHKWKEVR DN VTWLASWTEN+Q
Sbjct: 147 RGEHPKMGMLKKRIMPEDVIINCSKDSKIPEPPEGHKWKEVRFDNTVTWLASWTENIQNT 206
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSSKLKGEKDW+KYE AR+L ++ IR Y+ DWKSKE++ RQRAVALYFID
Sbjct: 207 LKYIMLNPSSKLKGEKDWEKYEVARRLKDVVHTIRAQYRKDWKSKEIKKRQRAVALYFID 266
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHIQLH + DG+ +VV FDFLGKDSIRYYN+V V
Sbjct: 267 KLALRAGNEKEEGETADTVGCCSLRVEHIQLHPQLDGQEHVVEFDFLGKDSIRYYNKVSV 326
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK VFKNLQLF++NK ++DLFD L+T+ LNKHL LM+GLTAKVFRTYNASITLQ+QL
Sbjct: 327 EKPVFKNLQLFMKNKDPTEDLFDHLSTTFLNKHLQRLMDGLTAKVFRTYNASITLQEQLK 386
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L +P+ + A K+L+YNRANRAVA+LCNHQRS+PK+ KSM L+EKI K+KQV++A+
Sbjct: 387 ALTNPEDNIAGKLLSYNRANRAVAILCNHQRSIPKTFAKSMQVLQEKIDAKKKQVEEAQE 446
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
+K A+ K +++ +KKK L RL+EQL K+ +Q TDKEENK IALGTSKLNY
Sbjct: 447 EVKKAEDEFKDTKDAKAELNVEKKKKLLKRLEEQLAKMNIQATDKEENKQIALGTSKLNY 506
Query: 478 LDPRISVTW 486
LDPRI+V W
Sbjct: 507 LDPRITVAW 515
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 96/111 (86%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+Q +KYIMLNPSSKLKGEKDW+KYE AR+L ++ IR Y+ DWKSK
Sbjct: 192 TVTWLASWTENIQNTLKYIMLNPSSKLKGEKDWEKYEVARRLKDVVHTIRAQYRKDWKSK 251
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
E++ RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHIQLH + D
Sbjct: 252 EIKKRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIQLHPQLD 302
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
+IYNKTQR KF WAIDMA DF F
Sbjct: 525 RIYNKTQREKFAWAIDMAGEDFEF 548
>gi|321463231|gb|EFX74248.1| hypothetical protein DAPPUDRAFT_109061 [Daphnia pulex]
Length = 543
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/488 (66%), Positives = 374/488 (76%), Gaps = 43/488 (8%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS AEE+ +FYA M++H+Y TK+ FN NF KDWRK MT E+ +ITDL KCDF
Sbjct: 60 GQEMKLSTAAEEVGSFYAAMLDHDYVTKDVFNKNFFKDWRKFMTHSEKEIITDLKKCDFT 119
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF KSEERK +KEEK ++K ENE + KEYG C IDGHK++IGNF+IEPPGLFRG
Sbjct: 120 YMLTYFKAKSEERKNRTKEEKLQLKTENEEMVKEYGWCIIDGHKQRIGNFKIEPPGLFRG 179
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG +KRRV ED+IINC+K + P PPPGHKWKEVR DN VTWLASWTENVQGQ
Sbjct: 180 RGDHPKMGMVKRRVMPEDVIINCTKGT-APKPPPGHKWKEVRSDNTVTWLASWTENVQGQ 238
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
Y+ DWKSKEM+IRQR+VALYFID
Sbjct: 239 T------------------------------------YKEDWKSKEMKIRQRSVALYFID 262
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVG CSLRVEHI LHE+K+GK VV FDFLGKDSIRYYNEVPVE
Sbjct: 263 KLALRAGNEKDEDQADTVGACSLRVEHISLHEQKEGKQCVVVFDFLGKDSIRYYNEVPVE 322
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNLQ+F+ENKK DDLFDRLNT+++NKHL++LMEGLTAKVFRT+NAS TLQ+QL+E
Sbjct: 323 KRVFKNLQIFMENKKPGDDLFDRLNTTIMNKHLNDLMEGLTAKVFRTFNASNTLQEQLDE 382
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP S EKILAYNRANRAVA+LCNHQR+VPK+ KSM NL+ KI+ KR+ ++DAE++
Sbjct: 383 LTDPKSSVTEKILAYNRANRAVAILCNHQRAVPKTFAKSMENLQVKITAKREAIEDAEKS 442
Query: 425 LKD----AKKAGESKAMTDKKKTA--LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
KD AKK G + A K + +LKEQL+KLEVQ TD+EENK IALGTSKLNYL
Sbjct: 443 FKDLKKEAKKTGSAAAKIAAGKKEKQVEKLKEQLMKLEVQATDREENKEIALGTSKLNYL 502
Query: 479 DPRISVTW 486
DPRISV W
Sbjct: 503 DPRISVAW 510
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 72/113 (63%), Gaps = 36/113 (31%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTENVQGQ Y+ DWKSK
Sbjct: 224 TVTWLASWTENVQGQT------------------------------------YKEDWKSK 247
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKK 595
EM+IRQR+VALYFIDKLALRAGNEKDEDQADTVG CSLRVEHI LHE+K+ K+
Sbjct: 248 EMKIRQRSVALYFIDKLALRAGNEKDEDQADTVGACSLRVEHISLHEQKEGKQ 300
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF+WAIDMA +FVF
Sbjct: 520 KIYNKTQREKFQWAIDMAGPEFVF 543
>gi|395860138|ref|XP_003802372.1| PREDICTED: DNA topoisomerase I, mitochondrial, partial [Otolemur
garnettii]
Length = 572
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/489 (62%), Positives = 383/489 (78%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS AEE+ATFY ++++HEYTTKE F NF DW+K MT +ER VIT L KCDF
Sbjct: 51 GKPLKLSLAAEEVATFYGKILDHEYTTKEVFQNNFFSDWQKEMTTEERKVITSLDKCDFT 110
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YF K+ RKA+ +EEK+K+K+ E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 111 EIHRYFADKAVARKALPREEKQKLKEAAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRG 170
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG +K+RV ED++INCS+DSK+P PP GH+WKEVR DN VTWLASWTENVQ
Sbjct: 171 RGDHPKMGMVKKRVLPEDVVINCSRDSKIPEPPTGHQWKEVRTDNTVTWLASWTENVQSS 230
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYI LNP+SKL+GEKDWQKYETAR+L + +IR YQADW+S MR RQRAVALY ID
Sbjct: 231 IKYITLNPNSKLRGEKDWQKYETARRLKGVVAEIRSQYQADWRSGGMRTRQRAVALYLID 290
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAG+ K+E + ADT GCCSLRV H++LH E DG YVV FDFLGKD+IRYYN VPV
Sbjct: 291 KLALRAGSRKEEGEVADTAGCCSLRVRHVRLHPEADGHKYVVEFDFLGKDAIRYYNRVPV 350
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
E V++NLQLF+++K+ D LFD L T+ LN+HL +LM+GLTAKVFRTYNASITLQ QL
Sbjct: 351 EGPVYENLQLFMDHKEPEDKLFDGLTTASLNRHLQDLMDGLTAKVFRTYNASITLQGQLR 410
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++QV +A
Sbjct: 411 ALTRAEDSVAAKILSYNRANRAVAILCNHQRAAPKTFEKSMQNLQTKIKVKKEQVAEAMV 470
Query: 424 ALKDAKK------AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ AK G+S+++ +KK+ +L +L+EQL +L Q T +EENK +ALGTSKLNY
Sbjct: 471 ELRRAKADSEIKGDGKSRSVLEKKRRSLEKLQEQLARLSAQATAREENKQVALGTSKLNY 530
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 531 LDPRISIAW 539
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/114 (69%), Positives = 92/114 (80%), Gaps = 1/114 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTENVQ +KYI LNP+SKL+GEKDWQKYETAR+L + +IR YQADW+S
Sbjct: 216 TVTWLASWTENVQSSIKYITLNPNSKLRGEKDWQKYETARRLKGVVAEIRSQYQADWRSG 275
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDEKK 595
MR RQRAVALY IDKLALRAG+ K+E + ADT GCCSLRV H++LH E D K
Sbjct: 276 GMRTRQRAVALYLIDKLALRAGSRKEEGEVADTAGCCSLRVRHVRLHPEADGHK 329
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WA +MA DF F
Sbjct: 549 KIYNKTQREKFAWAFNMAGEDFEF 572
>gi|386642871|ref|NP_001245375.1| DNA topoisomerase I, mitochondrial isoform 2 [Homo sapiens]
gi|386642873|ref|NP_001245376.1| DNA topoisomerase I, mitochondrial isoform 2 [Homo sapiens]
Length = 503
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/470 (65%), Positives = 374/470 (79%), Gaps = 7/470 (1%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKE 83
M++HEYTTKE F NF DWRK M +ER VI L KCDF ++H YFV K+ RK +S+E
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 84 EKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
EK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRGRG+HPKMG LKRR+ ED+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ 203
+INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ +KYIMLNP SKLKGE WQ
Sbjct: 121 VINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQ 180
Query: 204 KYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEK-DEDQADTV 262
K+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFIDKLALRAGNEK D + ADTV
Sbjct: 181 KFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTV 240
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSD 322
GCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPVEK V+KNLQLF+ENK D
Sbjct: 241 GCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRD 300
Query: 323 DLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRA 382
DLFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL L + S A KIL+YNRA
Sbjct: 301 DLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRA 360
Query: 383 NRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKD------AKKAGESKA 436
NR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A L+ A+ G+S++
Sbjct: 361 NRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRARAEHKAQGDGKSRS 420
Query: 437 MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNYLDPRIS+ W
Sbjct: 421 VLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAW 470
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 147 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 206
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 207 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 257
>gi|194379456|dbj|BAG63694.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/470 (65%), Positives = 374/470 (79%), Gaps = 7/470 (1%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKE 83
M++HEYTTKE F NF DWRK M +ER VI L KCDF ++H YFV K+ RK +S+E
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 84 EKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
EK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRGRG+HPKMG LKRR+ ED+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ 203
+INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE++Q +KYIMLNP SKLKGE WQ
Sbjct: 121 VINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESIQNSIKYIMLNPCSKLKGETAWQ 180
Query: 204 KYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEK-DEDQADTV 262
K+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFIDKLALRAGNEK D + ADTV
Sbjct: 181 KFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTV 240
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSD 322
GCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPVEK V+KNLQLF+ENK D
Sbjct: 241 GCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRD 300
Query: 323 DLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRA 382
DLFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL L + S A KIL+YNRA
Sbjct: 301 DLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRA 360
Query: 383 NRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKD------AKKAGESKA 436
NR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A L+ A+ G+S++
Sbjct: 361 NRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRARAEHKAQGDGKSRS 420
Query: 437 MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNYLDPRIS+ W
Sbjct: 421 VLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAW 470
Score = 176 bits (445), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE++Q +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 147 TVTWLAAWTESIQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 206
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 207 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 257
>gi|221046148|dbj|BAH14751.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/470 (65%), Positives = 374/470 (79%), Gaps = 7/470 (1%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKE 83
M++HEYTTKE F NF DWRK M +ER VI L KCDF ++H YFV K+ RK +S+E
Sbjct: 1 MLDHEYTTKEVFRKNFFSDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 84 EKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
EK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRGRG+HPKMG LKRR+ ED+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ 203
+INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ +KYIMLNP SKLKGE WQ
Sbjct: 121 VINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQ 180
Query: 204 KYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEK-DEDQADTV 262
K+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFIDKLALRAGNEK D + ADTV
Sbjct: 181 KFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTV 240
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSD 322
GCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPVEK V+KNLQLF+ENK D
Sbjct: 241 GCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRD 300
Query: 323 DLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRA 382
DLFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL L + S A KIL+YNRA
Sbjct: 301 DLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRA 360
Query: 383 NRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKD------AKKAGESKA 436
NR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A L+ A+ G+S++
Sbjct: 361 NRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRARAEHKAQGDGKSRS 420
Query: 437 MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNYLDPRIS+ W
Sbjct: 421 VLEKKRWLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAW 470
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 147 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 206
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 207 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 257
>gi|221045214|dbj|BAH14284.1| unnamed protein product [Homo sapiens]
Length = 503
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/470 (65%), Positives = 374/470 (79%), Gaps = 7/470 (1%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKE 83
M++HEYTTKE F NF DWRK M +ER VI L KCDF ++H YFV K+ RK +S+E
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 84 EKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
EK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRGRG+HPKMG LKRR+ ED+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ 203
+INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ +KYIMLNP SKLKGE WQ
Sbjct: 121 VINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQ 180
Query: 204 KYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEK-DEDQADTV 262
K+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFIDKLALRAGNEK D + ADTV
Sbjct: 181 KFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTV 240
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSD 322
GCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPVEK V+KNLQLF+ENK D
Sbjct: 241 GCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRD 300
Query: 323 DLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRA 382
DLFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL L + S A KIL+YNRA
Sbjct: 301 DLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRA 360
Query: 383 NRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKD------AKKAGESKA 436
NR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A L+ A+ G+S++
Sbjct: 361 NRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRARAEHKAQGDGKSRS 420
Query: 437 MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNYLDPRIS+ W
Sbjct: 421 VLEKKRWLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAW 470
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 147 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 206
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 207 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 257
>gi|332263525|ref|XP_003280802.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 2 [Nomascus
leucogenys]
Length = 503
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/474 (64%), Positives = 371/474 (78%), Gaps = 15/474 (3%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKE 83
M++HEYTTKE F NF DWRK MT +ER VI L KCDF ++H YFV K+ RK +++E
Sbjct: 1 MLDHEYTTKEVFQKNFFNDWRKEMTVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLTRE 60
Query: 84 EKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
EK+K+K E E + +E+G C +DGH+EKIGNF+IEPPGLFRGRG+HP+MG LKRR+ ED+
Sbjct: 61 EKQKLKGEAEKLQQEFGYCILDGHREKIGNFKIEPPGLFRGRGDHPRMGMLKRRITPEDV 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ 203
+INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ +KYIMLNP SKLKGEK WQ
Sbjct: 121 VINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNSIKYIMLNPCSKLKGEKAWQ 180
Query: 204 KYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEK-DEDQADTV 262
K+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFIDKLALRAGNEK D + ADTV
Sbjct: 181 KFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTV 240
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSD 322
GCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPVEK V+KNLQLF+ENK D
Sbjct: 241 GCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPQD 300
Query: 323 DLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRA 382
DLFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL L + S A KIL+YNRA
Sbjct: 301 DLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRA 360
Query: 383 NRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV----------KDAERALKDAKKAG 432
NR VA+LCNHQR P + +KSM NL+ KI K++QV + +A DAK
Sbjct: 361 NRVVAILCNHQRVTPSTFEKSMQNLQTKIQAKKEQVAEARAELRRARAEHKAQGDAK--- 417
Query: 433 ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
S+++ +KK+ L +L+EQL L VQ TDKEENK +ALGTSKLNYLDPRIS+ W
Sbjct: 418 -SRSVLEKKRRLLEKLQEQLAGLSVQATDKEENKQVALGTSKLNYLDPRISIAW 470
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 96/111 (86%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGEK WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 147 TVTWLAAWTESVQNSIKYIMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYRADWKSR 206
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 207 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 257
>gi|426360898|ref|XP_004047665.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 2 [Gorilla
gorilla gorilla]
Length = 503
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/470 (65%), Positives = 371/470 (78%), Gaps = 7/470 (1%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKE 83
M++HEYTTKE F NF DWRK M +ER VI L KCDF ++H YFV K+ RK +S+E
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 84 EKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
EK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRGRG HPKMG LKRR+ ED+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGNHPKMGMLKRRIMPEDV 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ 203
+INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ +KYIMLNP SKLKGE WQ
Sbjct: 121 VINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQ 180
Query: 204 KYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEK-DEDQADTV 262
K+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFIDKLALRAGNEK D + ADTV
Sbjct: 181 KFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTV 240
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSD 322
GCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPVEK V+KNLQLF+ENK D
Sbjct: 241 GCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRD 300
Query: 323 DLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRA 382
DLFDRL T LNKHL ELM+GLTAKVFRTYNASITLQ+QL L + S A KIL+YNRA
Sbjct: 301 DLFDRLTTISLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRA 360
Query: 383 NRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKD------AKKAGESKA 436
NR VA+LCNHQR+ P +KSM NL+ KI K++QV +A L+ A+ G+S++
Sbjct: 361 NRVVAILCNHQRATPSMFEKSMQNLQTKIQAKKEQVAEARAELRRARAEHKAQGDGKSRS 420
Query: 437 MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNYLDPRIS+ W
Sbjct: 421 VLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAW 470
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 147 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 206
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 207 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 257
>gi|47221872|emb|CAF98884.1| unnamed protein product [Tetraodon nigroviridis]
Length = 622
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/520 (63%), Positives = 397/520 (76%), Gaps = 38/520 (7%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK++KLS AEE+A F+A+M++HEYTTK+ F NF +DWRK MT++ER++I +L KCDF
Sbjct: 70 GKKVKLSLAAEEVALFFAQMLDHEYTTKKVFRENFFQDWRKEMTDEERSLIQELDKCDFG 129
Query: 65 KMHAYFVQKSEERKAMSKEEK--------KKIKDENEAITKEYGVCTIDGHKEKIGNFRI 116
++HA K E RK MSKEEK K +K+ N+ I EYG C +D H+E+IGNF+I
Sbjct: 130 EIHAMHKAKVEARKNMSKEEKLVCNIQFRKVLKEANQKILDEYGYCLLDHHRERIGNFKI 189
Query: 117 EPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLAS 176
EPPGLFRGRGEHPK GKLK+R+Q ED+IINCSK+S++P PP GH+WKEVRHDN VTWLAS
Sbjct: 190 EPPGLFRGRGEHPKQGKLKKRIQPEDVIINCSKESRIPVPPAGHRWKEVRHDNTVTWLAS 249
Query: 177 WTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQR 236
WTEN+QG +KYIMLN +SKLKGEKDW+KYE ARKL ++ IR Y D KS+EM RQR
Sbjct: 250 WTENIQGSIKYIMLNANSKLKGEKDWEKYEVARKLKSCVDNIRNQYLMDLKSREMCTRQR 309
Query: 237 AVALYFID---------KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVC 286
AVALYFID KLALRAGNEK+E + ADTVGCCSLRVEHI LH+ D VV
Sbjct: 310 AVALYFIDKVGVTVVILKLALRAGNEKEEGETADTVGCCSLRVEHITLHDTLDASECVVE 369
Query: 287 FDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTA 346
FDFLGKDSIRYYN+VPV K+VFKNL+LF+E+K+ D+LFDRLNTS+LNKHLS LM GLTA
Sbjct: 370 FDFLGKDSIRYYNKVPVIKKVFKNLKLFMEDKQPGDELFDRLNTSLLNKHLSSLMPGLTA 429
Query: 347 KVFRTYNASITLQQQLNELMD-----------PDF-SEAEKILAYNRANRAVAVLCNHQR 394
KVFRTYNASITLQQQL EL + P+ S AEK+L+YNRANRAVA+LCNHQR
Sbjct: 430 KVFRTYNASITLQQQLKELTNVIILFFFPCRLPESDSVAEKLLSYNRANRAVAILCNHQR 489
Query: 395 SVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKA--------GESKAMTDKKKTALG 446
+ PK+ D+SM NL+ KI +++Q+ A+ LK AKK + +A+ +KK A+
Sbjct: 490 APPKTFDQSMANLQSKIEARKEQLVLAKSELKQAKKEAKAKGSADAKLQALVVRKKMAVK 549
Query: 447 RLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
R +EQLLKLEVQ TD+EENK IALGTSKLNYLDPRISV W
Sbjct: 550 RCEEQLLKLEVQATDREENKQIALGTSKLNYLDPRISVAW 589
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 92/120 (76%), Gaps = 10/120 (8%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QG +KYIMLN +SKLKGEKDW+KYE ARKL ++ IR Y D KS+
Sbjct: 243 TVTWLASWTENIQGSIKYIMLNANSKLKGEKDWEKYEVARKLKSCVDNIRNQYLMDLKSR 302
Query: 543 EMRIRQRAVALYFID---------KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
EM RQRAVALYFID KLALRAGNEK+E + ADTVGCCSLRVEHI LH+ D
Sbjct: 303 EMCTRQRAVALYFIDKVGVTVVILKLALRAGNEKEEGETADTVGCCSLRVEHITLHDTLD 362
>gi|397497408|ref|XP_003819503.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 1 [Pan
paniscus]
gi|397497410|ref|XP_003819504.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 2 [Pan
paniscus]
gi|397497412|ref|XP_003819505.1| PREDICTED: DNA topoisomerase I, mitochondrial isoform 3 [Pan
paniscus]
Length = 503
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/470 (65%), Positives = 373/470 (79%), Gaps = 7/470 (1%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKE 83
M+ HEYTTKE F NF DWRK M +ER VI L KCDF ++H YFV K+ RK +S+E
Sbjct: 1 MLGHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 84 EKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
EK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRGRG+HPKMG LKRR+ ED+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRIMPEDV 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ 203
+INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ +KYIMLNP SKLKGE WQ
Sbjct: 121 VINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQ 180
Query: 204 KYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEK-DEDQADTV 262
K+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFIDKLALRAGNEK D + ADTV
Sbjct: 181 KFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTV 240
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSD 322
GCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPVEK V+KNLQLF+E+K D
Sbjct: 241 GCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMESKGPRD 300
Query: 323 DLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRA 382
+LFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL L + S A KIL+YNRA
Sbjct: 301 NLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRA 360
Query: 383 NRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKD------AKKAGESKA 436
NR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A L+ A+ G+S++
Sbjct: 361 NRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRARAEHKAQGDGKSRS 420
Query: 437 MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNYLDPRIS+ W
Sbjct: 421 VLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISIAW 470
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 147 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 206
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 207 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 257
>gi|340378353|ref|XP_003387692.1| PREDICTED: DNA topoisomerase 1-like [Amphimedon queenslandica]
Length = 712
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/493 (65%), Positives = 393/493 (79%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS+ AEE ATF+A+M++H+YT+K+ F NF DWRK MT +E A I D ++C+F+
Sbjct: 191 GKPMKLSEAAEEAATFFAKMLDHDYTSKDVFCNNFFADWRKEMTSEEAATIKDFTRCNFK 250
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YF++KSEE+K M+KEEKKKIK+ N+AIT+EYG +DGHKEKIGNF+ EPPGLFRG
Sbjct: 251 EIHEYFLRKSEEKKQMTKEEKKKIKEANDAITEEYGWAIMDGHKEKIGNFKTEPPGLFRG 310
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPK GK+KRRVQ ED+ IN K + VPP P GHKWK V+HDN+VTWLASWTEN+Q Q
Sbjct: 311 RGDHPKQGKIKRRVQPEDVTINIGKKAPVPPAPEGHKWKSVQHDNKVTWLASWTENIQSQ 370
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+MLNP+S+LKGEKD KYETAR+L I +IR NY++D KS+E +RQRAVALYFID
Sbjct: 371 IKYVMLNPTSRLKGEKDLAKYETARRLKGRIEEIRRNYESDLKSRETAVRQRAVALYFID 430
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEKD D+ ADTVGCCSLRVEHI+LHEE +GK +V FDFLGKDSIRYYNEV V
Sbjct: 431 KLALRAGNEKDADEAADTVGCCSLRVEHIKLHEELNGKSDMVVFDFLGKDSIRYYNEVQV 490
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
+VFKNL +F++ K+ DDLFDRL+T++LNKHLSELMEGLTAKVFRTYNASITLQ+QL
Sbjct: 491 THQVFKNLHIFMKGKETGDDLFDRLSTALLNKHLSELMEGLTAKVFRTYNASITLQEQLE 550
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA-- 421
EL D + EKIL+YNRANRAVAVLCNHQR+ PK+ D M NL+ KI+ K + + DA
Sbjct: 551 ELTKEDDTVNEKILSYNRANRAVAVLCNHQRTAPKTFDTQMSNLQAKITAKEEAILDAKK 610
Query: 422 ERALKDAKKAGESKAMTDKKKTA----LGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
E + G S + KK + L +L+EQL KLE+Q TDKEENK IALGTSKLNY
Sbjct: 611 EIKKMKKELKGTSDSKLQKKLESKVKQLPKLEEQLKKLEIQATDKEENKEIALGTSKLNY 670
Query: 478 LDPRISVTWLASW 490
LDPRISV+W W
Sbjct: 671 LDPRISVSWCKKW 683
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 95/108 (87%), Gaps = 1/108 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLASWTEN+Q Q+KY+MLNP+S+LKGEKD KYETAR+L I +IR NY++D KS+E
Sbjct: 357 VTWLASWTENIQSQIKYVMLNPTSRLKGEKDLAKYETARRLKGRIEEIRRNYESDLKSRE 416
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEE 590
+RQRAVALYFIDKLALRAGNEKD D+ ADTVGCCSLRVEHI+LHEE
Sbjct: 417 TAVRQRAVALYFIDKLALRAGNEKDADEAADTVGCCSLRVEHIKLHEE 464
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
K+YN+TQR KF WAI+MA FVF
Sbjct: 689 KVYNRTQREKFAWAIEMADETFVF 712
>gi|297300214|ref|XP_002805556.1| PREDICTED: DNA topoisomerase I, mitochondrial-like [Macaca mulatta]
Length = 574
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/486 (63%), Positives = 374/486 (76%), Gaps = 17/486 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK M+LS AEE+ATFY RM++HEYTTKE F NF DWRK MT +ER VI L KCDF
Sbjct: 69 GKPMRLSVKAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMTVEEREVIKSLDKCDFT 128
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +++EEK+K+K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 129 EIHRYFVDKAAARKVLTREEKQKLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRG 188
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV ED++INCS+DSK+P PP GH+WKEVR DN V WLA+WTE++Q
Sbjct: 189 RGDHPKMGMLKRRVMPEDVVINCSRDSKIPKPPAGHQWKEVRSDNTVMWLAAWTESIQNS 248
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+MLNP SKLKGEK WQK+ETAR+L +++IR YQADWKS+EM+ RQRAVALYFID
Sbjct: 249 IKYVMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYQADWKSQEMKTRQRAVALYFID 308
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEKD+ + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKDSIRYYN VPV
Sbjct: 309 KLALRAGNEKDDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDSIRYYNRVPV 368
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNLQLF++NK DDLFDRL T+ LNKHL ELM+GLTAKVFRTYNAS+TLQ+QL
Sbjct: 369 EKPVYKNLQLFMKNKDPQDDLFDRLTTTSLNKHLHELMDGLTAKVFRTYNASVTLQEQLR 428
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANRAVA+LCNHQR+ + +KSM NL+ KI K++QV +A
Sbjct: 429 ALTRAEDSIAAKILSYNRANRAVAILCNHQRATSSTFEKSMQNLQTKIQVKKEQVAEARA 488
Query: 424 ALKDAKKAGESKAMTDKKKTALGRL---KEQLLKLEVQETDKEENKTIALGTSKLNYLDP 480
L+ A+ E KA D K +G +E+ L EV AL TSKLNYLDP
Sbjct: 489 ELRKAR--AEHKAQGDGKSRRVGHTEPWEEETLAAEV-----------ALSTSKLNYLDP 535
Query: 481 RISVTW 486
RIS+ W
Sbjct: 536 RISIAW 541
Score = 178 bits (451), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 96/111 (86%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA+WTE++Q +KY+MLNP SKLKGEK WQK+ETAR+L +++IR YQADWKS+
Sbjct: 234 TVMWLAAWTESIQNSIKYVMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYQADWKSQ 293
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEKD+ + ADTVGCCSLRVEH+QLH E D
Sbjct: 294 EMKTRQRAVALYFIDKLALRAGNEKDDGEAADTVGCCSLRVEHVQLHPEAD 344
>gi|348555915|ref|XP_003463768.1| PREDICTED: DNA topoisomerase I, mitochondrial-like [Cavia
porcellus]
Length = 596
Score = 636 bits (1640), Expect = e-179, Method: Compositional matrix adjust.
Identities = 304/489 (62%), Positives = 378/489 (77%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS AEE+ATFY +M++HEYTTKE F NF DW+K MT +ER +I L KCDF
Sbjct: 75 GKPVKLSLAAEEVATFYGKMLDHEYTTKEVFQNNFFNDWQKEMTVEERCLIKHLDKCDFT 134
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H +F+ K+ +A+ +EEK+K+K+E E + +E+G C +DGH+EKIGNF++EPPGLF G
Sbjct: 135 EIHRHFIDKAAAWRALPREEKQKLKEEAEKLEQEFGYCILDGHREKIGNFKMEPPGLFCG 194
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR++ ED+IINCS+DSK+P PP GH+WKEVR DN VTWLA+WTENVQ
Sbjct: 195 RGDHPKMGMLKRRIRPEDVIINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTENVQNS 254
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSSKLKGEKDWQKYETAR+L +N+IR Y+ADWKS +M+ QR VALYFID
Sbjct: 255 IKYIMLNPSSKLKGEKDWQKYETARRLKGVVNEIRSQYRADWKSLDMKKSQRGVALYFID 314
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALR GNEK+E + ADTVGCCSLRVEH++LH +G +VV DFLGKDS+RY+N VPV
Sbjct: 315 KLALRTGNEKEESRTADTVGCCSLRVEHVRLHRHANGHQHVVELDFLGKDSVRYHNCVPV 374
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK VF NLQLF+ NK D LFD+L TS LNKHL + M+GLTAKVFRTYNAS Q+QL
Sbjct: 375 EKPVFWNLQLFMANKDPGDKLFDKLTTSSLNKHLQDSMDGLTAKVFRTYNASTIFQEQLQ 434
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KILAYNRANRAVA+ CNHQR+ PK+ +KS+ NL+ KI K+ Q+ +A+
Sbjct: 435 VLTRAEDSTAAKILAYNRANRAVAIYCNHQRAAPKTFEKSVRNLQTKIQAKKIQIAEAQE 494
Query: 424 ALKDA------KKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A K G+SK + +KK+ L +L+EQL L Q DKEENK +ALGTSKLNY
Sbjct: 495 ELRKAEVDHRIKGDGKSKRILEKKQRLLQKLEEQLGHLSTQAIDKEENKHVALGTSKLNY 554
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 555 LDPRISIAW 563
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/107 (74%), Positives = 93/107 (86%), Gaps = 1/107 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTENVQ +KYIMLNPSSKLKGEKDWQKYETAR+L +N+IR Y+ADWKS
Sbjct: 240 TVTWLAAWTENVQNSIKYIMLNPSSKLKGEKDWQKYETARRLKGVVNEIRSQYRADWKSL 299
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLH 588
+M+ QR VALYFIDKLALR GNEK+E + ADTVGCCSLRVEH++LH
Sbjct: 300 DMKKSQRGVALYFIDKLALRTGNEKEESRTADTVGCCSLRVEHVRLH 346
>gi|47227318|emb|CAF96867.1| unnamed protein product [Tetraodon nigroviridis]
Length = 806
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 331/566 (58%), Positives = 396/566 (69%), Gaps = 80/566 (14%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK M LS DAEE+ATF+A+M++HEYTTK+ F NF KDWRK MT +E+A ITDL KCDF
Sbjct: 212 GKPMVLSADAEEVATFFAKMLDHEYTTKDVFRKNFFKDWRKEMTPEEKAKITDLKKCDFS 271
Query: 65 KMHAYFVQKSEERKAMSKEEK-----------------------KKIKDENEAITKEYGV 101
+MH YF ++E RKAM+KEEK +KIK+ENE I +++G
Sbjct: 272 EMHQYFKAQTEARKAMTKEEKLVSPHPHSCRRRLRAAGFIPSAFQKIKEENERILQQFGF 331
Query: 102 CTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHK 161
C +D HKE+I NFRIEPPGLFRGRG+HPKMG LKRR++ EDIIINCSKDSK P PPPG +
Sbjct: 332 CIMDNHKERIANFRIEPPGLFRGRGDHPKMGMLKRRIRPEDIIINCSKDSKYPEPPPGTR 391
Query: 162 WKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIREN 221
WKEVRHDN+VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR
Sbjct: 392 WKEVRHDNKVTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRNQ 451
Query: 222 YQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDG 280
Y+ DWKSKEMRIRQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E DG
Sbjct: 452 YREDWKSKEMRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLYPEIDG 511
Query: 281 KPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSEL 340
+ YVV FDFLGKDSIRYYN+VPVEKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL EL
Sbjct: 512 QEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKEPDDDLFDRLNTSILNKHLQEL 571
Query: 341 MEGLTAKVFRTYNASITLQQQLNELMD--PDFSEAEKILAY-NRANRAVAVLCNHQRSVP 397
M+GLTAKVFRTYNASITLQ QL EL PD + ++ ANR + L + S P
Sbjct: 572 MDGLTAKVFRTYNASITLQAQLKELTSGAPDVARCWRVEGRPGVANRLRSSLQRRKTSPP 631
Query: 398 KSHDKS----------------------------MGNLKEKISNKRKQVK---------- 419
+S + + + + ++R+ V
Sbjct: 632 RSCPTTGPTGPWPSCATTRGLRPRPLRSPCRTCRLRSAPQASDSRRRSVPLILCPLHLLQ 691
Query: 420 -DA--------ERALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEE 464
DA +R LK AK K +SK + KK A+ R+++QL+KLEVQ TD+EE
Sbjct: 692 IDAKKEQLSAAKRELKGAKADAKVRKDEKSKKAVESKKKAVQRIEDQLMKLEVQATDREE 751
Query: 465 NKTIALGTSKLNYLDPRISVTWLASW 490
NK IALGTSKLNYLDPRISV W W
Sbjct: 752 NKQIALGTSKLNYLDPRISVAWCKKW 777
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 99/110 (90%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKE
Sbjct: 401 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRNQYREDWKSKE 460
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
MRIRQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E D
Sbjct: 461 MRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLYPEID 510
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 783 KIYNKTQREKFAWAIDMAEKDYEF 806
>gi|50657355|ref|NP_001002798.1| DNA topoisomerase I, mitochondrial [Rattus norvegicus]
gi|81872302|sp|Q6IM78.1|TOP1M_RAT RecName: Full=DNA topoisomerase I, mitochondrial; Short=TOP1mt;
Flags: Precursor
gi|47131152|tpg|DAA02296.1| TPA_exp: mitochondrial DNA topoisomerase I [Rattus norvegicus]
gi|149066185|gb|EDM16058.1| DNA topoisomerase I, mitochondrial [Rattus norvegicus]
Length = 593
Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust.
Identities = 301/488 (61%), Positives = 379/488 (77%), Gaps = 6/488 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS AEE+ATFY +M+ E TTKE F NF DW+K MT +ER +IT L KCDF
Sbjct: 73 GKPVRLSLAAEEVATFYGKMLHLECTTKEVFRRNFFSDWQKEMTAEERKLITHLDKCDFS 132
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H +F++++E R+ + +E+K+K+K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 133 EIHRHFMERAEARRTLPREQKQKLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRG 192
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV ED++INCS+DSK+P PP GH+WKEVR DN V WLA+W EN+Q
Sbjct: 193 RGDHPKMGMLKRRVMPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVMWLAAWVENIQNS 252
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYI+LNPSSK KGE DWQKYE AR+L ++KIR YQADWKS EM+ RQ AVALYFID
Sbjct: 253 FKYIILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSPEMKKRQLAVALYFID 312
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALR GNEK+E + ADTVGCCSLRVEH++LH DG+ +VV DFLGKDSIRY N V V
Sbjct: 313 KLALRTGNEKEEGETADTVGCCSLRVEHVRLHTPADGQEHVVELDFLGKDSIRYKNHVTV 372
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK VF+NLQ F+E+K DDLFD L TS LNKHL +LMEGLTAKVFRTYNASITLQ+QL
Sbjct: 373 EKLVFQNLQHFMEDKDPRDDLFDALTTSSLNKHLQDLMEGLTAKVFRTYNASITLQEQLR 432
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S K+LAYNRANRAVAVLCNHQR++PK+ ++SM L++KI K+ QV +A+
Sbjct: 433 VLTRAEDSLTCKVLAYNRANRAVAVLCNHQRAIPKTFEESMQTLQKKIETKKAQVAEAQV 492
Query: 424 ALK----DAKKAGESKAMTD-KKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
L+ D + G+SK+ + +K+ L +L+EQL +L + TDKEENK +ALGT+KLNYL
Sbjct: 493 ELQKAETDLRMRGDSKSKSFLQKQQRLLKLEEQLARLCTKATDKEENKQVALGTAKLNYL 552
Query: 479 DPRISVTW 486
DPRIS+ W
Sbjct: 553 DPRISIAW 560
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 89/111 (80%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA+W EN+Q KYI+LNPSSK KGE DWQKYE AR+L ++KIR YQADWKS
Sbjct: 238 TVMWLAAWVENIQNSFKYIILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSP 297
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EM+ RQ AVALYFIDKLALR GNEK+E + ADTVGCCSLRVEH++LH D
Sbjct: 298 EMKKRQLAVALYFIDKLALRTGNEKEEGETADTVGCCSLRVEHVRLHTPAD 348
>gi|324502181|gb|ADY40962.1| DNA topoisomerase 1 [Ascaris suum]
Length = 624
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 297/412 (72%), Positives = 343/412 (83%), Gaps = 1/412 (0%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G +KLS +AEE+ATFYA+M++HEYTTK+AFN NF KDWRK+MT ER IT+L KCDFR
Sbjct: 212 GNVIKLSPEAEEVATFYAKMLDHEYTTKDAFNNNFFKDWRKTMTAAERETITELEKCDFR 271
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M A+F + SEERKAMSKEEK+K+K+ EA K YG IDGH++KIGNFRIEPPGLFRG
Sbjct: 272 PMAAHFQKLSEERKAMSKEEKQKLKEAKEAEMKIYGYAVIDGHRQKIGNFRIEPPGLFRG 331
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG+LK+RV+ ED+IINCSKDS++P PP GHKWKEVRHDN VTWL SWTENV GQ
Sbjct: 332 RGGHPKMGRLKKRVRPEDVIINCSKDSEIPVPPEGHKWKEVRHDNTVTWLCSWTENVLGQ 391
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYIMLNPSSK+KGEKD++K+ETAR+L ++ IR Y AD+KSKEMRIRQRAVALYFID
Sbjct: 392 NKYIMLNPSSKIKGEKDYEKFETARRLKSRVDDIRAVYTADFKSKEMRIRQRAVALYFID 451
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEKD D+ ADTVGCCSLR EHI+LHE+ D K YVV FDF GKDSIRYYN+VPV
Sbjct: 452 KLALRAGNEKDVDEVADTVGCCSLRCEHIKLHEKLDDKDYVVEFDFPGKDSIRYYNKVPV 511
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVF NL+LF+ENK DDLFDRL+T+ LN+HL LM GLT KVFRTYNASITLQQQL
Sbjct: 512 EKRVFNNLKLFMENKDPGDDLFDRLDTTTLNQHLQSLMPGLTVKVFRTYNASITLQQQLE 571
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKR 415
+L S E +L+YNRANR VA+LCNHQR+VPKSH+KSM NL KI K+
Sbjct: 572 KLTKEGGSVQENLLSYNRANRQVAILCNHQRAVPKSHEKSMENLSAKIKAKK 623
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/113 (76%), Positives = 99/113 (87%), Gaps = 1/113 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWTENV GQ KYIMLNPSSK+KGEKD++K+ETAR+L ++ IR Y AD+KSK
Sbjct: 377 TVTWLCSWTENVLGQNKYIMLNPSSKIKGEKDYEKFETARRLKSRVDDIRAVYTADFKSK 436
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKD D+ ADTVGCCSLR EHI+LHE+ D+K
Sbjct: 437 EMRIRQRAVALYFIDKLALRAGNEKDVDEVADTVGCCSLRCEHIKLHEKLDDK 489
>gi|50657345|ref|NP_082680.1| DNA topoisomerase I, mitochondrial [Mus musculus]
gi|81871438|sp|Q8R4U6.1|TOP1M_MOUSE RecName: Full=DNA topoisomerase I, mitochondrial; Short=TOP1mt;
Flags: Precursor
gi|19880190|gb|AAM00270.1|AF362952_1 DNA topoisomerase I [Mus musculus]
gi|74151135|dbj|BAE27691.1| unnamed protein product [Mus musculus]
gi|148697536|gb|EDL29483.1| DNA topoisomerase 1, mitochondrial [Mus musculus]
gi|187951989|gb|AAI38583.1| DNA topoisomerase 1, mitochondrial [Mus musculus]
gi|187953975|gb|AAI38584.1| DNA topoisomerase 1, mitochondrial [Mus musculus]
Length = 593
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 301/488 (61%), Positives = 377/488 (77%), Gaps = 6/488 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS AEE+ATFY +M+ E T+KE F NF DWRK MT +ER +IT L KCDF
Sbjct: 73 GKPLKLSLAAEEVATFYGKMLHLECTSKEVFRRNFFSDWRKEMTPEERRLITHLDKCDFT 132
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H +F++++E R+ + +E+K+K+K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 133 EIHKHFLERAEARRTLPREQKQKLKEEAEKLQQEFGYCVLDGHREKIGNFKTEPPGLFRG 192
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV ED++INCS+DSK+P PP GH+WKEVR DN V WLA+W E++Q
Sbjct: 193 RGDHPKMGMLKRRVMPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVMWLAAWVEHIQNS 252
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY++LNPSSK KGE DWQKYE AR+L ++KIR YQADWKS EM+ RQ AVALYFID
Sbjct: 253 FKYVILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSPEMKKRQLAVALYFID 312
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALR GNEK+E + ADTVGCCSLRVEHI+LH G+ +VV DFLGKDSIRY N V V
Sbjct: 313 KLALRTGNEKEEGETADTVGCCSLRVEHIRLHAPAGGQEHVVELDFLGKDSIRYKNHVTV 372
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK VF+NLQ F+E+K DDLFD L TS LNKHL +LMEGLTAKVFRTYNAS+TLQ+QL
Sbjct: 373 EKLVFQNLQHFMEDKDPRDDLFDALTTSSLNKHLQDLMEGLTAKVFRTYNASVTLQEQLR 432
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S K+LAYNRANRAVAVLCNHQR+VPK+ +KSM L++KI K+ QV +A+
Sbjct: 433 VLTRAEDSVTCKVLAYNRANRAVAVLCNHQRAVPKTFEKSMQTLQKKIETKKAQVAEAQV 492
Query: 424 ALK----DAKKAGESKAMTD-KKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
L+ D + G+SK + +K+ L +L+EQL +L + TDKEENK +ALGT+KLNYL
Sbjct: 493 ELQKAETDLRMRGDSKPKSFLQKQRRLLKLEEQLARLCAKATDKEENKQVALGTAKLNYL 552
Query: 479 DPRISVTW 486
DPRIS+ W
Sbjct: 553 DPRISIAW 560
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/107 (70%), Positives = 88/107 (82%), Gaps = 1/107 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA+W E++Q KY++LNPSSK KGE DWQKYE AR+L ++KIR YQADWKS
Sbjct: 238 TVMWLAAWVEHIQNSFKYVILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSP 297
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLH 588
EM+ RQ AVALYFIDKLALR GNEK+E + ADTVGCCSLRVEHI+LH
Sbjct: 298 EMKKRQLAVALYFIDKLALRTGNEKEEGETADTVGCCSLRVEHIRLH 344
>gi|196011882|ref|XP_002115804.1| hypothetical protein TRIADDRAFT_30199 [Trichoplax adhaerens]
gi|190581580|gb|EDV21656.1| hypothetical protein TRIADDRAFT_30199, partial [Trichoplax
adhaerens]
Length = 560
Score = 623 bits (1606), Expect = e-175, Method: Compositional matrix adjust.
Identities = 313/489 (64%), Positives = 391/489 (79%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ LS EE A FYA+M++H+YT K+ FN NF D+RK MT E+ I SKCDF
Sbjct: 39 GQTFPLSDKTEEAAGFYAKMLDHDYTQKKIFNDNFWTDFRKEMTPAEKNHIKVFSKCDFS 98
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
K+ Y+ K+EER+ MSKEEK K+K ENE + +EYG C IDGH++++GNF+IEPPGLFRG
Sbjct: 99 KIAEYYKMKAEERRNMSKEEKNKLKKENEELMQEYGFCIIDGHRQRVGNFKIEPPGLFRG 158
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPK GK+KRR++A+DIIIN KD+K+P PPPG KWKEVR+DN+VTWLASWTEN+ G
Sbjct: 159 RGDHPKQGKIKRRIEAKDIIINIGKDAKLPAPPPGQKWKEVRYDNKVTWLASWTENINGS 218
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNP+SK+K EKD+QKYETARKL + I+KIR++Y+ADWKSKEMRIRQR+ ALYFID
Sbjct: 219 IKYIMLNPTSKIKAEKDYQKYETARKLKRYIDKIRQDYKADWKSKEMRIRQRSAALYFID 278
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
+LALRAG+EK+E + ADTVGCCSLR EHI+LH++ + K VV FDFLGKDSIRY N+VPV
Sbjct: 279 RLALRAGHEKEEGESADTVGCCSLRYEHIKLHDQLEDKMNVVEFDFLGKDSIRYVNQVPV 338
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK+V+KNL+LF +NKK DDLFDRL+T+ LNK+LSELMEGLTAKVFRTYNAS TLQ+QL+
Sbjct: 339 EKQVYKNLKLFCKNKKKGDDLFDRLSTTSLNKYLSELMEGLTAKVFRTYNASYTLQEQLH 398
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+++DP S +KIL YNR+NRAVA+LCNHQR+V K+ DK M NL+EKI K +Q+K+A++
Sbjct: 399 QVIDPKMSIEDKILIYNRSNRAVAILCNHQRTVSKTFDKQMSNLREKIEKKEQQLKEAKK 458
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
K AK K SK + +K+K L QL KL + ETDK ENK +AL TSKLNY
Sbjct: 459 EEKRAKSDLKERKDESSKKLYEKRKKKTEMLNRQLHKLNLTETDKVENKEVALSTSKLNY 518
Query: 478 LDPRISVTW 486
+DPRISV W
Sbjct: 519 MDPRISVAW 527
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 102/112 (91%), Gaps = 1/112 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLASWTEN+ G +KYIMLNP+SK+K EKD+QKYETARKL + I+KIR++Y+ADWKSKE
Sbjct: 205 VTWLASWTENINGSIKYIMLNPTSKIKAEKDYQKYETARKLKRYIDKIRQDYKADWKSKE 264
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDEK 594
MRIRQR+ ALYFID+LALRAG+EK+E + ADTVGCCSLR EHI+LH++ ++K
Sbjct: 265 MRIRQRSAALYFIDRLALRAGHEKEEGESADTVGCCSLRYEHIKLHDQLEDK 316
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 22/24 (91%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
K++NKTQR KF+WAI+MA+ D+VF
Sbjct: 537 KVFNKTQREKFKWAIEMASEDYVF 560
>gi|156368098|ref|XP_001627533.1| predicted protein [Nematostella vectensis]
gi|156214446|gb|EDO35433.1| predicted protein [Nematostella vectensis]
Length = 502
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 312/469 (66%), Positives = 382/469 (81%), Gaps = 6/469 (1%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKE 83
M+EH+YT+KE FN NF DWRK MTE+ER I DL CDF++MH YF K+EERK M+KE
Sbjct: 1 MLEHDYTSKEIFNKNFFSDWRKEMTEEERKHIKDLKNCDFKEMHKYFEMKNEERKNMTKE 60
Query: 84 EKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
EK +IK +NE I EYG C +D HK+++GNF+IEPPGLFRGRG+HPK GKLK+RV E++
Sbjct: 61 EKLEIKKKNEEILNEYGFCMMDHHKQRVGNFKIEPPGLFRGRGDHPKQGKLKKRVMPEEV 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ 203
IN KD+KVP PP GHKWK+V D+ VTWLA W EN+QG KY+MLNP+S+LKGEKDW+
Sbjct: 121 TINIGKDAKVPDPPAGHKWKKVICDDTVTWLACWIENIQGSYKYVMLNPTSRLKGEKDWR 180
Query: 204 KYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVG 263
KYETARKL + ++KIRE+Y+ DWKSKEMR+RQR VALYFIDKLALRAG+EKD+D ADTVG
Sbjct: 181 KYETARKLKECVDKIREDYRKDWKSKEMRLRQRGVALYFIDKLALRAGHEKDDDTADTVG 240
Query: 264 CCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDD 323
CCSLRVEHI+LHEE + K VV FDFLGKDS+RY N VP+EKR FKN++LF+E K+ DD
Sbjct: 241 CCSLRVEHIKLHEEWEDKECVVEFDFLGKDSVRYRNFVPIEKRAFKNMKLFMEGKQEGDD 300
Query: 324 LFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRAN 383
LFDRL T+ +NK+LSELMEGL+AKVFRT+NAS+TLQ QL +L +P+ + KIL+YNRAN
Sbjct: 301 LFDRLTTTSVNKYLSELMEGLSAKVFRTFNASLTLQDQLQKLTNPEDNVNAKILSYNRAN 360
Query: 384 RAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAK-KAGESKA-----M 437
RAVA+LCNHQR+ PK+ +KSM NL+ KIS+K+K VK+A++ LK + KA ESK+
Sbjct: 361 RAVAILCNHQRTAPKTFEKSMSNLQLKISDKKKTVKEAKKELKALRVKAKESKSESNNKA 420
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+KKK + RL+EQL KLEV TDKEENK IALGTSKLNYLDPRI+V W
Sbjct: 421 VEKKKAQVQRLEEQLFKLEVTATDKEENKEIALGTSKLNYLDPRITVAW 469
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/112 (75%), Positives = 102/112 (91%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W EN+QG KY+MLNP+S+LKGEKDW+KYETARKL + ++KIRE+Y+ DWKSK
Sbjct: 147 TVTWLACWIENIQGSYKYVMLNPTSRLKGEKDWRKYETARKLKECVDKIREDYRKDWKSK 206
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMR+RQR VALYFIDKLALRAG+EKD+D ADTVGCCSLRVEHI+LHEE ++K
Sbjct: 207 EMRLRQRGVALYFIDKLALRAGHEKDDDTADTVGCCSLRVEHIKLHEEWEDK 258
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/24 (79%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
K YNKTQR KF WAIDMA DFVF
Sbjct: 479 KAYNKTQREKFAWAIDMAGEDFVF 502
>gi|256076901|ref|XP_002574747.1| DNA topoisomerase type I [Schistosoma mansoni]
gi|360044089|emb|CCD81636.1| putative dna topoisomerase type I [Schistosoma mansoni]
Length = 587
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 299/407 (73%), Positives = 346/407 (85%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
K +KLS AEE+A FYARM++H+YTTKE FN NF +DW K+M E+ER I LSKCDFR
Sbjct: 165 SKPIKLSDHAEEVAGFYARMLDHDYTTKEVFNYNFFRDWVKTMNEEERRTIKSLSKCDFR 224
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF++ SEERK +KEEK+KIK+EN I EYG C +DGHK++IGNFRIEPPGLFRG
Sbjct: 225 EMHQYFLKLSEERKNRTKEEKQKIKEENLQIQNEYGYCILDGHKQRIGNFRIEPPGLFRG 284
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LK+R+ ED+IINCSKDSKVP PP GHKWKEVRHDN VTWLA WTEN+Q
Sbjct: 285 RGNHPKMGMLKKRIMPEDVIINCSKDSKVPAPPKGHKWKEVRHDNSVTWLACWTENIQNS 344
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYIMLNPSS+LKGEKDW+KYETAR L K I+KIR +Y+AD+K KEMRIRQRAVALYFID
Sbjct: 345 FKYIMLNPSSRLKGEKDWKKYETARCLHKVIDKIRADYRADFKHKEMRIRQRAVALYFID 404
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDED+ADTVGCCSLR EHI+LHEE +G+PYVV FDFLGKDSIRY N V V
Sbjct: 405 KLALRAGNEKDEDEADTVGCCSLRYEHIKLHEELNGQPYVVEFDFLGKDSIRYQNAVSVP 464
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKN++LF++NKK +DDLFDRLNT+VLN++L ELM+GLTAKVFRTYNAS TL++QL
Sbjct: 465 KRVFKNVKLFLKNKKENDDLFDRLNTTVLNQYLRELMDGLTAKVFRTYNASRTLEEQLER 524
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
L +PD K+LAYNRANRAVAVLCNHQRSVPKS KSM NL++K+
Sbjct: 525 LTNPDDPPHAKLLAYNRANRAVAVLCNHQRSVPKSFAKSMENLQKKV 571
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 89/108 (82%), Positives = 98/108 (90%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SVTWLA WTEN+Q KYIMLNPSS+LKGEKDW+KYETAR L K I+KIR +Y+AD+K K
Sbjct: 330 SVTWLACWTENIQNSFKYIMLNPSSRLKGEKDWKKYETARCLHKVIDKIRADYRADFKHK 389
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMRIRQRAVALYFIDKLALRAGNEKDED+ADTVGCCSLR EHI+LHEE
Sbjct: 390 EMRIRQRAVALYFIDKLALRAGNEKDEDEADTVGCCSLRYEHIKLHEE 437
>gi|256076897|ref|XP_002574745.1| DNA topoisomerase type I [Schistosoma mansoni]
gi|360044087|emb|CCD81634.1| putative dna topoisomerase type I [Schistosoma mansoni]
Length = 571
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 299/407 (73%), Positives = 346/407 (85%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
K +KLS AEE+A FYARM++H+YTTKE FN NF +DW K+M E+ER I LSKCDFR
Sbjct: 165 SKPIKLSDHAEEVAGFYARMLDHDYTTKEVFNYNFFRDWVKTMNEEERRTIKSLSKCDFR 224
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF++ SEERK +KEEK+KIK+EN I EYG C +DGHK++IGNFRIEPPGLFRG
Sbjct: 225 EMHQYFLKLSEERKNRTKEEKQKIKEENLQIQNEYGYCILDGHKQRIGNFRIEPPGLFRG 284
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LK+R+ ED+IINCSKDSKVP PP GHKWKEVRHDN VTWLA WTEN+Q
Sbjct: 285 RGNHPKMGMLKKRIMPEDVIINCSKDSKVPAPPKGHKWKEVRHDNSVTWLACWTENIQNS 344
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYIMLNPSS+LKGEKDW+KYETAR L K I+KIR +Y+AD+K KEMRIRQRAVALYFID
Sbjct: 345 FKYIMLNPSSRLKGEKDWKKYETARCLHKVIDKIRADYRADFKHKEMRIRQRAVALYFID 404
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDED+ADTVGCCSLR EHI+LHEE +G+PYVV FDFLGKDSIRY N V V
Sbjct: 405 KLALRAGNEKDEDEADTVGCCSLRYEHIKLHEELNGQPYVVEFDFLGKDSIRYQNAVSVP 464
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKN++LF++NKK +DDLFDRLNT+VLN++L ELM+GLTAKVFRTYNAS TL++QL
Sbjct: 465 KRVFKNVKLFLKNKKENDDLFDRLNTTVLNQYLRELMDGLTAKVFRTYNASRTLEEQLER 524
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
L +PD K+LAYNRANRAVAVLCNHQRSVPKS KSM NL++K+
Sbjct: 525 LTNPDDPPHAKLLAYNRANRAVAVLCNHQRSVPKSFAKSMENLQKKV 571
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 89/108 (82%), Positives = 98/108 (90%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SVTWLA WTEN+Q KYIMLNPSS+LKGEKDW+KYETAR L K I+KIR +Y+AD+K K
Sbjct: 330 SVTWLACWTENIQNSFKYIMLNPSSRLKGEKDWKKYETARCLHKVIDKIRADYRADFKHK 389
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMRIRQRAVALYFIDKLALRAGNEKDED+ADTVGCCSLR EHI+LHEE
Sbjct: 390 EMRIRQRAVALYFIDKLALRAGNEKDEDEADTVGCCSLRYEHIKLHEE 437
>gi|341902465|gb|EGT58400.1| CBN-TOP-1 protein [Caenorhabditis brenneri]
Length = 738
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 326/491 (66%), Positives = 388/491 (79%), Gaps = 13/491 (2%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
G+ MKLS +AEE ATFYA +++HEY+T +AFN NFMKDWRK MT KER ITDL KCDF
Sbjct: 217 AGERMKLSLEAEECATFYAGVLDHEYSTMKAFNENFMKDWRKVMTSKEREKITDLKKCDF 276
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
R + Y ++ E RKAM+KEEK KIK+E EA K YG+ IDGH++KI NFRIEPPG+FR
Sbjct: 277 RAIDLYQKEQREIRKAMTKEEKLKIKEEKEAEMKIYGIAVIDGHRQKIANFRIEPPGVFR 336
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPKMG +K+R+ ED+IINC KD+ +P PP GHKWKEVRHDN VTWL SWTE+V G
Sbjct: 337 GRGGHPKMGFIKKRIMPEDVIINCGKDTPIPKPPAGHKWKEVRHDNTVTWLCSWTESVLG 396
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
Q KYIMLNPSSK+KGEKD++KYETAR+L K I IR Y D+K +EMR+RQRA ALYFI
Sbjct: 397 QNKYIMLNPSSKIKGEKDYEKYETARRLKKKIAAIRAKYTEDFKDREMRVRQRATALYFI 456
Query: 244 DKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHE-------EKDGKPYVVCFDFLGKDSI 295
DKLALRAGNEKD D+ ADTVGCCSLRVEHI+L++ +K K YVV FDFLGKDSI
Sbjct: 457 DKLALRAGNEKDVDEAADTVGCCSLRVEHIKLYDSAKIEETDKKEKEYVVEFDFLGKDSI 516
Query: 296 RYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNAS 355
RY+N V VEKRV+KNL F+ENK DDLFDRL+TS LN+HL LM+GLT KVFRTYNAS
Sbjct: 517 RYFNRVAVEKRVYKNLGKFIENKNPGDDLFDRLDTSTLNEHLRSLMDGLTVKVFRTYNAS 576
Query: 356 ITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKR 415
ITLQ+QL +L +P S A KIL+YNRANR VA+LCNHQRSV K+HD++M L++KI +K+
Sbjct: 577 ITLQEQLQKLTNPKDSVAAKILSYNRANRQVAILCNHQRSVSKTHDQAMEKLEQKIKDKK 636
Query: 416 KQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
K+VK+AE ALK A+ A + KA + RLKEQL KL++ TDK+ENK IALGTSKL
Sbjct: 637 KEVKEAEEALKHARGAEKEKA-----QKKYDRLKEQLKKLKIARTDKDENKQIALGTSKL 691
Query: 476 NYLDPRISVTW 486
NYLDPRI+V W
Sbjct: 692 NYLDPRITVAW 702
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 80/108 (74%), Positives = 93/108 (86%), Gaps = 1/108 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWTE+V GQ KYIMLNPSSK+KGEKD++KYETAR+L K I IR Y D+K +
Sbjct: 383 TVTWLCSWTESVLGQNKYIMLNPSSKIKGEKDYEKYETARRLKKKIAAIRAKYTEDFKDR 442
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHE 589
EMR+RQRA ALYFIDKLALRAGNEKD D+ ADTVGCCSLRVEHI+L++
Sbjct: 443 EMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGCCSLRVEHIKLYD 490
>gi|219518625|gb|AAI45337.1| Top1mt protein [Mus musculus]
Length = 592
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 300/488 (61%), Positives = 376/488 (77%), Gaps = 7/488 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS AEE+ATFY +M+ E T+KE F NF DWRK MT +ER +IT L KCDF
Sbjct: 73 GKPLKLSLAAEEVATFYGKMLHLECTSKEVFRRNFFSDWRKEMTPEERRLITHLDKCDFT 132
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H +F++++E R+ + +E+K+ +K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 133 EIHKHFLERAEARRTLPREQKQ-LKEEAEKLQQEFGYCVLDGHREKIGNFKTEPPGLFRG 191
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV ED++INCS+DSK+P PP GH+WKEVR DN V WLA+W E++Q
Sbjct: 192 RGDHPKMGMLKRRVMPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVMWLAAWVEHIQNS 251
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY++LNPSSK KGE DWQKYE AR+L ++KIR YQADWKS EM+ RQ AVALYFID
Sbjct: 252 FKYVILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSPEMKKRQLAVALYFID 311
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALR GNEK+E + ADTVGCCSLRVEHI+LH G+ +VV DFLGKDSIRY N V V
Sbjct: 312 KLALRTGNEKEEGETADTVGCCSLRVEHIRLHAPAGGQEHVVELDFLGKDSIRYKNHVTV 371
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK VF+NLQ F+E+K DDLFD L TS LNKHL +LMEGLTAKVFRTYNAS+TLQ+QL
Sbjct: 372 EKLVFQNLQHFMEDKDPRDDLFDALTTSSLNKHLQDLMEGLTAKVFRTYNASVTLQEQLR 431
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S K+LAYNRANRAVAVLCNHQR+VPK+ +KSM L++KI K+ QV +A+
Sbjct: 432 VLTRAEDSVTCKVLAYNRANRAVAVLCNHQRAVPKTFEKSMQTLQKKIETKKAQVAEAQV 491
Query: 424 ALK----DAKKAGESKAMTD-KKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
L+ D + G+SK + +K+ L +L+EQL +L + TDKEENK +ALGT+KLNYL
Sbjct: 492 ELQKAETDLRMRGDSKPKSFLQKQRRLLKLEEQLARLCAKATDKEENKQVALGTAKLNYL 551
Query: 479 DPRISVTW 486
DPRIS+ W
Sbjct: 552 DPRISIAW 559
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/107 (70%), Positives = 88/107 (82%), Gaps = 1/107 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA+W E++Q KY++LNPSSK KGE DWQKYE AR+L ++KIR YQADWKS
Sbjct: 237 TVMWLAAWVEHIQNSFKYVILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSP 296
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLH 588
EM+ RQ AVALYFIDKLALR GNEK+E + ADTVGCCSLRVEHI+LH
Sbjct: 297 EMKKRQLAVALYFIDKLALRTGNEKEEGETADTVGCCSLRVEHIRLH 343
>gi|268561720|ref|XP_002646512.1| C. briggsae CBR-TOP-1 protein [Caenorhabditis briggsae]
Length = 730
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 322/490 (65%), Positives = 382/490 (77%), Gaps = 13/490 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G MKLS AEE ATFYA ++ HEY+++ FNTNFMKDWRK MT ER ITDL+KCDF
Sbjct: 210 GHRMKLSPAAEECATFYAGVVNHEYSSQVQFNTNFMKDWRKLMTSGEREKITDLAKCDFT 269
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+ Y ++ E RKAM+KEEK KIK+E +YG+ IDGHKEKI NFRIEPPG+FRG
Sbjct: 270 HIVEYQNEQREIRKAMTKEEKAKIKEEKAQEVVDYGIAIIDGHKEKIANFRIEPPGVFRG 329
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG +K+R+ ED+I+NC KDS +P PP GHKWKEVRHDN V+WL SWTE+V GQ
Sbjct: 330 RGGHPKMGFIKKRIVPEDVIVNCGKDSVIPKPPLGHKWKEVRHDNTVSWLCSWTESVLGQ 389
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYIMLN SSK+KG KD++KYETAR+L K I IRE Y ADWKSKEMRIRQRA ALYFID
Sbjct: 390 NKYIMLNASSKIKGSKDYEKYETARRLKKKIGGIRERYIADWKSKEMRIRQRATALYFID 449
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHE-------EKDGKPYVVCFDFLGKDSIR 296
KLALRAGNEKD D+ ADTVGCCSLR EHI+L E +K K +VV FDFLGKDSIR
Sbjct: 450 KLALRAGNEKDVDESADTVGCCSLRYEHIKLFESAKLQETDKKEKEFVVEFDFLGKDSIR 509
Query: 297 YYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASI 356
Y+N V VEKRVFKNL+LF+ENKK DDLFDRL+T+ LN+HL LM+GLT KVFRTYNASI
Sbjct: 510 YFNRVAVEKRVFKNLKLFMENKKAGDDLFDRLDTATLNEHLRSLMDGLTVKVFRTYNASI 569
Query: 357 TLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRK 416
TLQ+QL +L +PD + A KIL+YNRANR VA+LCNHQR+V K D+SM L++KI +K+
Sbjct: 570 TLQEQLIKLTNPDDNVAAKILSYNRANRQVAILCNHQRAVSKGFDESMAKLEQKIKDKKA 629
Query: 417 QVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLN 476
+VK+AE ALK A+ A + KA + + KEQL KL++Q TDK+ENK IALGTSKLN
Sbjct: 630 EVKEAEAALKSARGAEKEKA-----QKKYDQKKEQLKKLKIQRTDKDENKQIALGTSKLN 684
Query: 477 YLDPRISVTW 486
Y+DPRI+V W
Sbjct: 685 YIDPRITVAW 694
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 92/108 (85%), Gaps = 1/108 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V+WL SWTE+V GQ KYIMLN SSK+KG KD++KYETAR+L K I IRE Y ADWKSK
Sbjct: 375 TVSWLCSWTESVLGQNKYIMLNASSKIKGSKDYEKYETARRLKKKIGGIRERYIADWKSK 434
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHE 589
EMRIRQRA ALYFIDKLALRAGNEKD D+ ADTVGCCSLR EHI+L E
Sbjct: 435 EMRIRQRATALYFIDKLALRAGNEKDVDESADTVGCCSLRYEHIKLFE 482
>gi|17508321|ref|NP_493337.1| Protein TOP-1, isoform a [Caenorhabditis elegans]
gi|74957937|sp|O17966.1|TOP1_CAEEL RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; Short=topoI
gi|3878632|emb|CAB07640.1| Protein TOP-1, isoform a [Caenorhabditis elegans]
Length = 806
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 324/491 (65%), Positives = 392/491 (79%), Gaps = 13/491 (2%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GG++MKL+ + EEIA FYA +++HEY+TKEAFN NFMKDWRK MT +ER I DL KCDF
Sbjct: 285 GGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFNKNFMKDWRKVMTVEERERIHDLKKCDF 344
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
R + AY ++ E RKAM+KEEK KIK+E EA K YG+ IDGH++K+ NFRIEPPG+FR
Sbjct: 345 RAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVKIYGIAIIDGHRQKVANFRIEPPGVFR 404
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPKMG +K+R+ ED+IINC KD+++P PPPGHKWKEVRHDN VTWL SWTE+V G
Sbjct: 405 GRGGHPKMGLIKKRIMPEDVIINCGKDTEIPKPPPGHKWKEVRHDNTVTWLCSWTESVLG 464
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
Q KYIMLNPSSK+KGEKD++KYETAR+L K I IRE Y D+KSKEMR+RQRA ALYFI
Sbjct: 465 QNKYIMLNPSSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSKEMRVRQRATALYFI 524
Query: 244 DKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQL-------HEEKDGKPYVVCFDFLGKDSI 295
DKLALRAGNEKD D+ ADTVGCCSLRVEHI+L ++K K +VV FDFLGKDSI
Sbjct: 525 DKLALRAGNEKDVDEAADTVGCCSLRVEHIKLFDSAKLNEDDKKEKEFVVEFDFLGKDSI 584
Query: 296 RYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNAS 355
RY+N V VEKRV+KNL++F+E K SDDLFDRL+T+ LN HL LM+GLT KVFRTYNAS
Sbjct: 585 RYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDRLDTATLNDHLRSLMDGLTVKVFRTYNAS 644
Query: 356 ITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKR 415
ITLQ+QL +L +P + A KIL+YNRANR VA+LCNHQR+V K D+SM L++KI +K+
Sbjct: 645 ITLQEQLIKLTNPKDNVAAKILSYNRANRQVAILCNHQRAVSKGFDESMQKLEQKIKDKK 704
Query: 416 KQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
K+VK+AE ALK A+ A + KA + RLKEQL KL++ TDK+ENK IALGTSKL
Sbjct: 705 KEVKEAEAALKSARGAEKEKA-----QKKYDRLKEQLKKLKISRTDKDENKQIALGTSKL 759
Query: 476 NYLDPRISVTW 486
NY+DPRI+V W
Sbjct: 760 NYIDPRITVAW 770
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 94/108 (87%), Gaps = 1/108 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWTE+V GQ KYIMLNPSSK+KGEKD++KYETAR+L K I IRE Y D+KSK
Sbjct: 451 TVTWLCSWTESVLGQNKYIMLNPSSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSK 510
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHE 589
EMR+RQRA ALYFIDKLALRAGNEKD D+ ADTVGCCSLRVEHI+L +
Sbjct: 511 EMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGCCSLRVEHIKLFD 558
>gi|1934847|emb|CAA65537.1| DNA topoisomerase [Caenorhabditis elegans]
Length = 806
Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust.
Identities = 324/491 (65%), Positives = 392/491 (79%), Gaps = 13/491 (2%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GG++MKL+ + EEIA FYA +++HEY+TKEAFN NFMKDWRK MT +ER I DL KCDF
Sbjct: 285 GGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFNKNFMKDWRKVMTVEERERIHDLKKCDF 344
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
R + AY ++ E RKAM+KEEK KIK+E EA K YG+ IDGH++K+ NFRIEPPG+FR
Sbjct: 345 RAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVKIYGIAIIDGHRQKVANFRIEPPGVFR 404
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPKMG +K+R+ ED+IINC KD+++P PPPGHKWKEVRHDN VTWL SWTE+V G
Sbjct: 405 GRGGHPKMGLIKKRIMPEDVIINCGKDTEIPKPPPGHKWKEVRHDNTVTWLCSWTESVLG 464
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
Q KYIMLNPSSK+KGEKD++KYETAR+L K I IRE Y D+KSKEMR+RQRA ALYFI
Sbjct: 465 QNKYIMLNPSSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSKEMRVRQRATALYFI 524
Query: 244 DKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQL-------HEEKDGKPYVVCFDFLGKDSI 295
DKLALRAGNEKD D+ ADTVGCCSLRVEHI+L ++K K +VV FDFLGKDSI
Sbjct: 525 DKLALRAGNEKDVDEAADTVGCCSLRVEHIKLFDSAKLNEDDKKEKEFVVEFDFLGKDSI 584
Query: 296 RYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNAS 355
RY+N V VEKRV+KNL++F+E K SDDLFDRL+T+ LN HL LM+GLT KVFRTYNAS
Sbjct: 585 RYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDRLDTATLNDHLRSLMDGLTVKVFRTYNAS 644
Query: 356 ITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKR 415
ITLQ+QL +L +P + A KIL+YNRANR VA+LCNHQR+V K D+SM L++KI +K+
Sbjct: 645 ITLQEQLIKLTNPKDNVAAKILSYNRANRQVAILCNHQRAVSKGFDESMQKLEQKIKDKK 704
Query: 416 KQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
K+VK+AE ALK A+ A + KA + RLKEQL KL++ TDK+ENK IALGTSKL
Sbjct: 705 KEVKEAEAALKSARGAEKEKA-----QKKYDRLKEQLKKLKISRTDKDENKQIALGTSKL 759
Query: 476 NYLDPRISVTW 486
NY+DPRI+V W
Sbjct: 760 NYIDPRITVAW 770
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 94/108 (87%), Gaps = 1/108 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWTE+V GQ KYIMLNPSSK+KGEKD++KYETAR+L K I IRE Y D+KSK
Sbjct: 451 TVTWLCSWTESVLGQNKYIMLNPSSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSK 510
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHE 589
EMR+RQRA ALYFIDKLALRAGNEKD D+ ADTVGCCSLRVEHI+L +
Sbjct: 511 EMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGCCSLRVEHIKLFD 558
>gi|71989170|ref|NP_001021578.1| Protein TOP-1, isoform b [Caenorhabditis elegans]
gi|3878631|emb|CAB07639.1| Protein TOP-1, isoform b [Caenorhabditis elegans]
Length = 734
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 324/491 (65%), Positives = 392/491 (79%), Gaps = 13/491 (2%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GG++MKL+ + EEIA FYA +++HEY+TKEAFN NFMKDWRK MT +ER I DL KCDF
Sbjct: 213 GGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFNKNFMKDWRKVMTVEERERIHDLKKCDF 272
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
R + AY ++ E RKAM+KEEK KIK+E EA K YG+ IDGH++K+ NFRIEPPG+FR
Sbjct: 273 RAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVKIYGIAIIDGHRQKVANFRIEPPGVFR 332
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPKMG +K+R+ ED+IINC KD+++P PPPGHKWKEVRHDN VTWL SWTE+V G
Sbjct: 333 GRGGHPKMGLIKKRIMPEDVIINCGKDTEIPKPPPGHKWKEVRHDNTVTWLCSWTESVLG 392
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
Q KYIMLNPSSK+KGEKD++KYETAR+L K I IRE Y D+KSKEMR+RQRA ALYFI
Sbjct: 393 QNKYIMLNPSSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSKEMRVRQRATALYFI 452
Query: 244 DKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQL-------HEEKDGKPYVVCFDFLGKDSI 295
DKLALRAGNEKD D+ ADTVGCCSLRVEHI+L ++K K +VV FDFLGKDSI
Sbjct: 453 DKLALRAGNEKDVDEAADTVGCCSLRVEHIKLFDSAKLNEDDKKEKEFVVEFDFLGKDSI 512
Query: 296 RYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNAS 355
RY+N V VEKRV+KNL++F+E K SDDLFDRL+T+ LN HL LM+GLT KVFRTYNAS
Sbjct: 513 RYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDRLDTATLNDHLRSLMDGLTVKVFRTYNAS 572
Query: 356 ITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKR 415
ITLQ+QL +L +P + A KIL+YNRANR VA+LCNHQR+V K D+SM L++KI +K+
Sbjct: 573 ITLQEQLIKLTNPKDNVAAKILSYNRANRQVAILCNHQRAVSKGFDESMQKLEQKIKDKK 632
Query: 416 KQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
K+VK+AE ALK A+ A + KA + RLKEQL KL++ TDK+ENK IALGTSKL
Sbjct: 633 KEVKEAEAALKSARGAEKEKA-----QKKYDRLKEQLKKLKISRTDKDENKQIALGTSKL 687
Query: 476 NYLDPRISVTW 486
NY+DPRI+V W
Sbjct: 688 NYIDPRITVAW 698
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 94/108 (87%), Gaps = 1/108 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWTE+V GQ KYIMLNPSSK+KGEKD++KYETAR+L K I IRE Y D+KSK
Sbjct: 379 TVTWLCSWTESVLGQNKYIMLNPSSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSK 438
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHE 589
EMR+RQRA ALYFIDKLALRAGNEKD D+ ADTVGCCSLRVEHI+L +
Sbjct: 439 EMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGCCSLRVEHIKLFD 486
>gi|402587841|gb|EJW81775.1| DNA topoisomerase 1 [Wuchereria bancrofti]
Length = 691
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 300/441 (68%), Positives = 354/441 (80%), Gaps = 5/441 (1%)
Query: 47 MTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDG 106
MT ER ITDL+KCDFR+MH ++V+ EER+++SKEEK+K+K+ + K YGV IDG
Sbjct: 222 MTPAEREKITDLTKCDFREMHDHYVKLREERRSLSKEEKQKLKEIKQEEAKMYGVAYIDG 281
Query: 107 HKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVR 166
HK+KIGNFRIEPP LFRGRG HPKMG+LK+RV ED+IINCSKDS++P PP GH+WKEVR
Sbjct: 282 HKQKIGNFRIEPPDLFRGRGGHPKMGRLKKRVNPEDVIINCSKDSEIPKPPEGHRWKEVR 341
Query: 167 HDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW 226
HDN VTWL SWT+N+ G +KYIMLNPSSK+KGEKD++K+ETAR+L + IRENY D
Sbjct: 342 HDNTVTWLCSWTDNILGSIKYIMLNPSSKIKGEKDYEKFETARRLKDIVGSIRENYTKDL 401
Query: 227 KSKEMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVV 285
KSKEMR+RQRAVALYFIDKLALRAGNEKD D+ ADTVGCCSLR EHIQLHE+ D YVV
Sbjct: 402 KSKEMRVRQRAVALYFIDKLALRAGNEKDMDEAADTVGCCSLRCEHIQLHEKLDDNDYVV 461
Query: 286 CFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLT 345
FDFLGKDSIRYYN+VPVEKRVFKNL+LF+ENK GSDDLFDRL+T+ LNK+L LM GLT
Sbjct: 462 EFDFLGKDSIRYYNKVPVEKRVFKNLKLFMENKSGSDDLFDRLDTASLNKYLQSLMLGLT 521
Query: 346 AKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMG 405
AKVFRTYNASITLQQQL++L D + E +L YNRANR VA+LCNHQR+VPKSH+KSM
Sbjct: 522 AKVFRTYNASITLQQQLDKLTKDDSTVPELLLCYNRANRQVAILCNHQRAVPKSHEKSME 581
Query: 406 NLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEEN 465
NLK KI K K + K+ + + A + + R+KEQL KL++Q TDK+EN
Sbjct: 582 NLKAKIKAK----KTELKEAKEELEKAHADAAKQRASKRVDRVKEQLRKLKIQRTDKDEN 637
Query: 466 KTIALGTSKLNYLDPRISVTW 486
K IAL TSKLNYLDPRISV W
Sbjct: 638 KQIALSTSKLNYLDPRISVAW 658
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 97/112 (86%), Gaps = 1/112 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWT+N+ G +KYIMLNPSSK+KGEKD++K+ETAR+L + IRENY D KSK
Sbjct: 345 TVTWLCSWTDNILGSIKYIMLNPSSKIKGEKDYEKFETARRLKDIVGSIRENYTKDLKSK 404
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDE 593
EMR+RQRAVALYFIDKLALRAGNEKD D+ ADTVGCCSLR EHIQLHE+ D+
Sbjct: 405 EMRVRQRAVALYFIDKLALRAGNEKDMDEAADTVGCCSLRCEHIQLHEKLDD 456
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KI+NKTQR KFRWAIDMA ++VF
Sbjct: 668 KIFNKTQREKFRWAIDMADENYVF 691
>gi|198414178|ref|XP_002124723.1| PREDICTED: similar to DNA topoisomerase I, partial [Ciona
intestinalis]
Length = 482
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 306/453 (67%), Positives = 363/453 (80%), Gaps = 8/453 (1%)
Query: 47 MTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDG 106
M ++ER+ ITDL KC+FR + +YF QKSEERKA SKEEK++ K +NEA+ +E+G C DG
Sbjct: 2 MNKQERSTITDLGKCNFRDVCSYFQQKSEERKARSKEEKQEEKKKNEALIEEFGFCDWDG 61
Query: 107 HKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVR 166
H+EKIGNFR+EPPGLFRGRG HPKMGKLK+R+ E+I INCSK+SK+P PP GHKWKEVR
Sbjct: 62 HREKIGNFRLEPPGLFRGRGNHPKMGKLKKRIIPENITINCSKNSKIPKPPAGHKWKEVR 121
Query: 167 HDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW 226
HDN VTWL SWTENVQ Q KYIMLNPSS++KGEKDWQKYE AR L +++IRE+Y D
Sbjct: 122 HDNAVTWLVSWTENVQNQNKYIMLNPSSRVKGEKDWQKYEVARNLKSKVDRIREDYMRDL 181
Query: 227 KSKEMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVV 285
KS EM +RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLR EHI+LH+ DGK ++V
Sbjct: 182 KSDEMMVRQRAVALYFIDKLALRAGNEKEDGESADTVGCCSLRCEHIKLHKHLDGKDFIV 241
Query: 286 CFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLT 345
FDFLGKDSIRYYN+VPV K+VFKNL LF ENK+G DDLFDRLNTS LNK+L+ LM+GLT
Sbjct: 242 EFDFLGKDSIRYYNKVPVLKQVFKNLVLFTENKEGPDDLFDRLNTSTLNKYLNSLMDGLT 301
Query: 346 AKVFRTYNASITLQQQLNELMDPDFSE-AEKILAYNRANRAVAVLCNHQRSVPKSHDKSM 404
AKVFRTYNASITL QL EL DPD A KIL+YNRANRAVAVLCNHQR+ PK+ + M
Sbjct: 302 AKVFRTYNASITLLNQLLELTDPDDENVASKILSYNRANRAVAVLCNHQRAAPKNFSEQM 361
Query: 405 GNLKEKISNKRKQVKDAERALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQ 458
G + EKI K++ ++DA++ K AK K+ + + KK + RL+EQL+KLEVQ
Sbjct: 362 GRMNEKIEKKQRDIQDAKQETKSAKSDYKHNKSEAKRKAYEGKKKKVERLQEQLIKLEVQ 421
Query: 459 ETDKEENKTIALGTSKLNYLDPRISVTWLASWT 491
TDKEENK IALGTSKLNYLDPRI+V W ++
Sbjct: 422 ATDKEENKEIALGTSKLNYLDPRITVAWCKKYS 454
Score = 171 bits (434), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 82/113 (72%), Positives = 93/113 (82%), Gaps = 1/113 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWTENVQ Q KYIMLNPSS++KGEKDWQKYE AR L +++IRE+Y D KS
Sbjct: 125 AVTWLVSWTENVQNQNKYIMLNPSSRVKGEKDWQKYEVARNLKSKVDRIREDYMRDLKSD 184
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDEK 594
EM +RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLR EHI+LH+ D K
Sbjct: 185 EMMVRQRAVALYFIDKLALRAGNEKEDGESADTVGCCSLRCEHIKLHKHLDGK 237
>gi|449683056|ref|XP_002162187.2| PREDICTED: DNA topoisomerase 1-like, partial [Hydra magnipapillata]
Length = 476
Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust.
Identities = 293/466 (62%), Positives = 365/466 (78%), Gaps = 8/466 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK M+LS +AEE+ATFYA+M++H+Y K+ FN NF +DWRK MT +ER +I L KCDF+
Sbjct: 11 GKPMQLSLEAEEVATFYAKMLDHDYVKKDIFNENFFEDWRKEMTAEERNIIKSLDKCDFK 70
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF++ +EE++ M+KEEK+ IK+ N I ++YG C +DGHK+K+GNFRIEPPGLFRG
Sbjct: 71 EMHAYFMKCAEEKRNMTKEEKQAIKEANLKIAEKYGFCEMDGHKQKVGNFRIEPPGLFRG 130
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPK GKLK+RV A+++IIN K++KVP PP G KWK V+HDN V+WLA W EN+ G
Sbjct: 131 RGDHPKQGKLKKRVSAKEVIINIGKEAKVPQPPEGQKWKAVQHDNTVSWLACWVENIAGG 190
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+MLN +++LKGEKDWQKYETARKL + + IRENY DWKSKEM+IRQR VA+YFID
Sbjct: 191 YKYVMLNAATRLKGEKDWQKYETARKLKECVETIRENYINDWKSKEMKIRQRGVAMYFID 250
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAG+EK+E + ADTVGCCSLRVEHI LH EKDG+ VV FDFLGKDSIRY N VPV
Sbjct: 251 KLALRAGHEKEEGESADTVGCCSLRVEHITLHPEKDGQENVVEFDFLGKDSIRYTNSVPV 310
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF++ K+ DDLFDRL+T+ LNK L ELM GL+AKVFRTYNASITLQQQLN
Sbjct: 311 EKRVFKNLQLFMQGKQAGDDLFDRLSTTSLNKFLGELMPGLSAKVFRTYNASITLQQQLN 370
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNL-------KEKISNKRK 416
EL + S K L YNRANRAVA+LCNHQR+ PK+ DK M N+ K+++ +K
Sbjct: 371 ELTEEGASVTAKFLQYNRANRAVAILCNHQRAAPKTFDKQMENIVNKLKEKKKQMKAVKK 430
Query: 417 QVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDK 462
++K+ +R + K+ + K +KKK L RL+EQ KLEV TDK
Sbjct: 431 EIKELKREYHEKGKSEKLKTNIEKKKNQLQRLEEQYFKLEVNMTDK 476
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 94/111 (84%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V+WLA W EN+ G KY+MLN +++LKGEKDWQKYETARKL + + IRENY DWKSK
Sbjct: 176 TVSWLACWVENIAGGYKYVMLNAATRLKGEKDWQKYETARKLKECVETIRENYINDWKSK 235
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
EM+IRQR VA+YFIDKLALRAG+EK+E + ADTVGCCSLRVEHI LH EKD
Sbjct: 236 EMKIRQRGVAMYFIDKLALRAGHEKEEGESADTVGCCSLRVEHITLHPEKD 286
>gi|115898767|ref|XP_801858.2| PREDICTED: DNA topoisomerase 1-like isoform 3, partial
[Strongylocentrotus purpuratus]
Length = 440
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/409 (70%), Positives = 334/409 (81%), Gaps = 7/409 (1%)
Query: 89 KDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCS 148
K +NE I KEYG C+ DGHKEKIGNFR+EPP LFRGRGEHPK G+LK+R+ ED+IINCS
Sbjct: 3 KRKNEEIQKEYGFCSFDGHKEKIGNFRVEPPSLFRGRGEHPKQGQLKKRIGPEDVIINCS 62
Query: 149 KDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETA 208
KDSK P PP GHKWK+V H+N VTWLASWTEN+QG +KY+MLNPSS++KGEKDW KYETA
Sbjct: 63 KDSKWPIPPEGHKWKKVIHENSVTWLASWTENIQGAIKYVMLNPSSRIKGEKDWAKYETA 122
Query: 209 RKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSL 267
RKL +S+++IR Y+ DWKSKEMR+RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSL
Sbjct: 123 RKLKESVDRIRNEYREDWKSKEMRVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSL 182
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHIQL+EE+DG +VV FDFLGKDSIRY N VPVEKRVFKNL+LF ENKKG D+LFDR
Sbjct: 183 RVEHIQLYEEQDGMEFVVKFDFLGKDSIRYENSVPVEKRVFKNLKLFTENKKGEDNLFDR 242
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNTS+LNK+L ELMEGLTAKVFRTYNAS TLQ QL EL D D S K+L+YNRANRAVA
Sbjct: 243 LNTSILNKYLQELMEGLTAKVFRTYNASSTLQNQLVELTDADDSVTAKMLSYNRANRAVA 302
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGES------KAMTDKK 441
VLCNHQR+ PK+ DK M NL+EKI K +K+A++ LK K ++ K +KK
Sbjct: 303 VLCNHQRAAPKTFDKQMENLQEKIDKKHLDIKEAKKGLKAIKSEYKNSRNEKLKLAMEKK 362
Query: 442 KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
+ RL EQL KLE++ TDKEENK IALGTSKLNYLDPRISV W W
Sbjct: 363 AKQVERLVEQLAKLEMKATDKEENKEIALGTSKLNYLDPRISVAWTKKW 411
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 88/111 (79%), Positives = 103/111 (92%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SVTWLASWTEN+QG +KY+MLNPSS++KGEKDW KYETARKL +S+++IR Y+ DWKSK
Sbjct: 84 SVTWLASWTENIQGAIKYVMLNPSSRIKGEKDWAKYETARKLKESVDRIRNEYREDWKSK 143
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EMR+RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHIQL+EE+D
Sbjct: 144 EMRVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIQLYEEQD 194
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 22/24 (91%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
K+YNKTQR KFRWA+DMA ADFVF
Sbjct: 417 KVYNKTQRDKFRWAVDMAGADFVF 440
>gi|195433288|ref|XP_002064647.1| GK23720 [Drosophila willistoni]
gi|194160732|gb|EDW75633.1| GK23720 [Drosophila willistoni]
Length = 638
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 292/488 (59%), Positives = 360/488 (73%), Gaps = 6/488 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +LS++ EE ATFYA+M+ HE F NF +D+R +MT +ER +I D KC+F
Sbjct: 107 GKPFQLSKETEEAATFYAKMLNHECCRNRIFYRNFFRDFRLTMTARERKIIKDFHKCNFY 166
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ +F +S +R A +KEEK + +NEA +YG C +DGH+E+I NFR+EPPGLFRG
Sbjct: 167 EIFKFFQAESNKRLAATKEEKLAKRKKNEAFVNKYGFCLVDGHRERISNFRLEPPGLFRG 226
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG +KRRVQA DIIINC +DSK+P PP G WKEVRHDN VTWLASW +NVQGQ
Sbjct: 227 RGDHPKMGMIKRRVQACDIIINCGRDSKIPMPPRGQMWKEVRHDNTVTWLASWVDNVQGQ 286
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYI+LN SK++ E D KYETAR+L K I+KIR Y+ +WKSK++ +RQRAVALYFID
Sbjct: 287 SKYIILNSWSKIRCESDHNKYETARRLHKFIDKIRATYREEWKSKDIFVRQRAVALYFID 346
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALR GNEK++DQADTVGCCSLRVEH+QLH K YVV FDFLGKDSIRYY V VE
Sbjct: 347 KLALRVGNEKEKDQADTVGCCSLRVEHVQLHRRLMDKEYVVAFDFLGKDSIRYYKTVEVE 406
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
RVF NL+LFV++K S +FD LN LN HL LM GLT KVFRTYNAS+TLQ QL+E
Sbjct: 407 PRVFNNLKLFVKDKGKSYYVFDCLNAHELNDHLKNLMIGLTTKVFRTYNASLTLQNQLDE 466
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L D + + AEK+L YNRANRAVA+LCNHQRS+PK H + M NL++KI NK + D E
Sbjct: 467 LTDEEATVAEKLLVYNRANRAVAILCNHQRSIPKGHQQIMENLRKKIHNKSNAINDLEAE 526
Query: 425 LKDAKKAGESKAMTDKKKTA------LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
+ K++ KK A L RLK+QL KL+++ET++EENK +AL TSKLNY+
Sbjct: 527 FNELKRSATLSGTAKDKKIAECKGKQLERLKDQLKKLKLEETNREENKCVALTTSKLNYI 586
Query: 479 DPRISVTW 486
DPRISV W
Sbjct: 587 DPRISVAW 594
Score = 165 bits (417), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 76/106 (71%), Positives = 91/106 (85%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW +NVQGQ KYI+LN SK++ E D KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 272 TVTWLASWVDNVQGQSKYIILNSWSKIRCESDHNKYETARRLHKFIDKIRATYREEWKSK 331
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLH 588
++ +RQRAVALYFIDKLALR GNEK++DQADTVGCCSLRVEH+QLH
Sbjct: 332 DIFVRQRAVALYFIDKLALRVGNEKEKDQADTVGCCSLRVEHVQLH 377
>gi|90855613|gb|ABE01168.1| IP16129p [Drosophila melanogaster]
Length = 382
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 274/362 (75%), Positives = 307/362 (84%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKE 83
M+ H+Y TKE FN NF KD+RKSMT +ER +I D KC+F++M YF +SE+RKA SKE
Sbjct: 1 MLNHDYCTKEVFNNNFFKDFRKSMTPREREIIKDFRKCNFQEMFNYFQAESEKRKAASKE 60
Query: 84 EKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
EK K+ENEA+ KE+G C IDGHKEKIGNFR+EPPGLFRGRGEHPKMG +KRR+QA D+
Sbjct: 61 EKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRGRGEHPKMGMIKRRIQASDV 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ 203
INC KDSKVP PPPG +WKEVRHDN VTWLASW ENVQGQVKYIMLNPSSKLKGEKD
Sbjct: 121 SINCGKDSKVPSPPPGSRWKEVRHDNTVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHI 180
Query: 204 KYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVG 263
KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFIDKLALRAGNEKDEDQADTVG
Sbjct: 181 KYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFIDKLALRAGNEKDEDQADTVG 240
Query: 264 CCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDD 323
CCSLRVEH+QLH+E +GK VV FDF GKDSIRYYNEV VEKRVFKNL+LF+E+KK DD
Sbjct: 241 CCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVEKRVFKNLELFMEHKKEGDD 300
Query: 324 LFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRAN 383
LFDRLNT VLN+HL ELMEGLTAKVFRTYNAS TLQ QL+ L DP + EK+LAYNRAN
Sbjct: 301 LFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDLLTDPSATVPEKLLAYNRAN 360
Query: 384 RA 385
R
Sbjct: 361 RV 362
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/112 (83%), Positives = 102/112 (91%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW ENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 147 TVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSK 206
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E + K
Sbjct: 207 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGK 258
>gi|320168823|gb|EFW45722.1| DNA topoisomerase I [Capsaspora owczarzaki ATCC 30864]
Length = 821
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 290/483 (60%), Positives = 354/483 (73%), Gaps = 15/483 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+++ LS EE+ FYA M++ +Y TK+ FN NFM + RK MT++E+A+ITDL+KCDF
Sbjct: 321 GQKVALSLPTEELIGFYAAMLKSDYVTKDKFNENFMVELRKVMTKEEKALITDLAKCDFT 380
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+ YF Q+ E RK +KEEK IK +NE + K+YG C +DG KE+I NFR+EPPGLFRG
Sbjct: 381 VIQDYFEQQREIRKNRTKEEKAAIKAQNEELVKQYGFCLMDGRKERIANFRVEPPGLFRG 440
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV EDI INCSKDS P PP GHKWKEV + VTWLASW + + G
Sbjct: 441 RGDHPKMGMLKRRVVPEDITINCSKDSTPPAPPAGHKWKEVICNKTVTWLASWVDGISGH 500
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+MLN +SKLKG D +KYE AR L K I IR +Y D SKEM IRQRA AL+FID
Sbjct: 501 AKYVMLNSASKLKGLNDMKKYEKARDLKKHIKHIRRSYTEDMSSKEMAIRQRATALHFID 560
Query: 245 KLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
+LALR GNEKD E+QADTVGCCSLR EHI+L E P V FDFLGKDSIRY N V V
Sbjct: 561 RLALRCGNEKDPEEQADTVGCCSLRFEHIKLEE-----PSTVHFDFLGKDSIRYQNSVDV 615
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
E+RV+KNL +F +NK+ D LFDRL T+ LNK+L++ M GLTAKVFRTYNASITLQ+QL
Sbjct: 616 EERVYKNLIIFQKNKEEGDLLFDRLTTTALNKYLTDFMPGLTAKVFRTYNASITLQEQL- 674
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+L D S EK+LAYNRANRAVAVLCNHQRSVPK + M + EKI +K++ +A +
Sbjct: 675 KLTPTDGSIHEKVLAYNRANRAVAVLCNHQRSVPKKFGEQMDKMDEKIEAVKKELNEARK 734
Query: 424 ALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRIS 483
K+ K +KKK A+ RLK ++ L +Q+TDK+ENKTIAL T+KLNYLDPRI+
Sbjct: 735 VYKETKD--------EKKKAAVERLKARVDSLVIQKTDKDENKTIALSTAKLNYLDPRIT 786
Query: 484 VTW 486
V W
Sbjct: 787 VAW 789
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/108 (65%), Positives = 82/108 (75%), Gaps = 1/108 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW + + G KY+MLN +SKLKG D +KYE AR L K I IR +Y D SK
Sbjct: 486 TVTWLASWVDGISGHAKYVMLNSASKLKGLNDMKKYEKARDLKKHIKHIRRSYTEDMSSK 545
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHE 589
EM IRQRA AL+FID+LALR GNEKD E+QADTVGCCSLR EHI+L E
Sbjct: 546 EMAIRQRATALHFIDRLALRCGNEKDPEEQADTVGCCSLRFEHIKLEE 593
>gi|308504900|ref|XP_003114633.1| CRE-TOP-1 protein [Caenorhabditis remanei]
gi|308258815|gb|EFP02768.1| CRE-TOP-1 protein [Caenorhabditis remanei]
Length = 720
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 284/414 (68%), Positives = 333/414 (80%), Gaps = 8/414 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ MKLS +AEE ATFYA +++HEY+T +AFN NFMKDWRK MT ER I DL KCDFR
Sbjct: 288 GERMKLSLEAEECATFYAGVLDHEYSTMDAFNKNFMKDWRKVMTTGERERIVDLKKCDFR 347
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+ Y ++ E RKAM+KEEK KIK+E E K YG+ IDGH++KI NFRIEPPG+FRG
Sbjct: 348 AIDVYQKEQREIRKAMTKEEKLKIKEEKEGEVKIYGIAVIDGHRQKIANFRIEPPGVFRG 407
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR++ ED+IINC KD+++P PPPGHKWKEVRHDN VTWL SWTE+V GQ
Sbjct: 408 RGGHPKMGMLKRRIRPEDVIINCGKDTEIPKPPPGHKWKEVRHDNTVTWLCSWTESVLGQ 467
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYIMLNPSSK+KGEKD++KYETAR+L K I IRE Y D+KSKEMRIRQRA ALYFID
Sbjct: 468 NKYIMLNPSSKIKGEKDYEKYETARRLKKKIGGIRERYTEDFKSKEMRIRQRATALYFID 527
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHE-------EKDGKPYVVCFDFLGKDSIR 296
KLALRAGNEKD D+ ADTVGCCSLR EHI+L + +K K +VV FDFLGKDSIR
Sbjct: 528 KLALRAGNEKDVDESADTVGCCSLRYEHIKLFDSAKLNETDKKEKEFVVEFDFLGKDSIR 587
Query: 297 YYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASI 356
YYN V VEKRVFKNL+LF+ENKK DDLFDRL+T+ LN+HL LM+GLT KVFRTYNASI
Sbjct: 588 YYNRVAVEKRVFKNLKLFMENKKPGDDLFDRLDTATLNEHLRSLMDGLTVKVFRTYNASI 647
Query: 357 TLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TLQ QL +L +P + A KIL+YNRANR VA+LCNHQR+V K+ D+SM L++K
Sbjct: 648 TLQDQLLKLTNPKDNVAAKILSYNRANRQVAILCNHQRAVSKTFDQSMEKLEQK 701
Score = 171 bits (434), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 93/108 (86%), Gaps = 1/108 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWTE+V GQ KYIMLNPSSK+KGEKD++KYETAR+L K I IRE Y D+KSK
Sbjct: 453 TVTWLCSWTESVLGQNKYIMLNPSSKIKGEKDYEKYETARRLKKKIGGIRERYTEDFKSK 512
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHE 589
EMRIRQRA ALYFIDKLALRAGNEKD D+ ADTVGCCSLR EHI+L +
Sbjct: 513 EMRIRQRATALYFIDKLALRAGNEKDVDESADTVGCCSLRYEHIKLFD 560
>gi|149057192|gb|EDM08515.1| rCG63558 [Rattus norvegicus]
Length = 378
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 265/371 (71%), Positives = 303/371 (81%), Gaps = 11/371 (2%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT E+ IT+LSKCDF +M
Sbjct: 1 MKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNTITNLSKCDFTQMS 60
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEA--------ITKEYGVCTIDGHKEKIGNFRIEPP 119
YF +SE RK MS+ +++ E + + KEYG C +D HKE+I NF+IEPP
Sbjct: 61 QYFKAQSEARKQMSRCWHRQMSKEEKLKIKEENEKLLKEYGFCVMDNHKERIANFKIEPP 120
Query: 120 GLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTE 179
GLFRGRG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTE
Sbjct: 121 GLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTE 180
Query: 180 NVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVA 239
N+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVA
Sbjct: 181 NIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVA 240
Query: 240 LYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
LYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG +VV FDF GKDSIRYY
Sbjct: 241 LYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDG--HVVEFDFPGKDSIRYY 298
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
N+VPVEKRVFKNLQ F+ENK+ DDLFDRLNT +LNKHL LMEGLTAKVFRTYNASITL
Sbjct: 299 NKVPVEKRVFKNLQPFMENKQPEDDLFDRLNTGILNKHLQGLMEGLTAKVFRTYNASITL 358
Query: 359 QQQLNELMDPD 369
QQQL EL PD
Sbjct: 359 QQQLKELTAPD 369
Score = 188 bits (477), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 172 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 231
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 232 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 281
>gi|297683812|ref|XP_002819562.1| PREDICTED: DNA topoisomerase I, mitochondrial, partial [Pongo
abelii]
Length = 629
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 253/364 (69%), Positives = 300/364 (82%), Gaps = 1/364 (0%)
Query: 3 AGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCD 62
GK ++LS AEE+ATFY RM++HEYTTKE F NF DWRK MT +ER VI L KCD
Sbjct: 79 PAGKPVRLSVVAEEVATFYGRMLDHEYTTKEVFQKNFFNDWRKEMTVEEREVIKSLDKCD 138
Query: 63 FRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLF 122
F ++H YFV K+ RK +++EEK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLF
Sbjct: 139 FTEIHRYFVDKAAARKVLTREEKQKLKEEAEKLQQEFGYCILDGHREKIGNFKIEPPGLF 198
Query: 123 RGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQ 182
RGRG+HPKMG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ
Sbjct: 199 RGRGDHPKMGMLKRRIMPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQ 258
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+KYIMLNP SKLKGEK WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYF
Sbjct: 259 NSIKYIMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYF 318
Query: 243 IDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEV 301
IDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN V
Sbjct: 319 IDKLALRAGNEKEDGEVADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRV 378
Query: 302 PVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
PVEK V+KNLQLF+ENK DDLFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+Q
Sbjct: 379 PVEKPVYKNLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQ 438
Query: 362 LNEL 365
L L
Sbjct: 439 LRAL 442
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/111 (73%), Positives = 96/111 (86%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGEK WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 246 TVTWLAAWTESVQNSIKYIMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYRADWKSR 305
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 306 EMKTRQRAVALYFIDKLALRAGNEKEDGEVADTVGCCSLRVEHVQLHPEAD 356
>gi|334326486|ref|XP_003340766.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase I,
mitochondrial-like [Monodelphis domestica]
Length = 683
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 286/489 (58%), Positives = 348/489 (71%), Gaps = 67/489 (13%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS EEIATFY +M++HEYTTKE F NF DWRK MT +E+ +I L KCDF
Sbjct: 222 GKAMKLSLATEEIATFYGKMLDHEYTTKEVFQNNFFNDWRKEMTVEEKKIIKHLDKCDFT 281
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+E RKA+ KEEK+K+K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 282 EIHKYFVNKNEARKALPKEEKQKLKEEAERLQEEFGYCILDGHREKIGNFKTEPPGLFRG 341
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LK+R+ ED+IINCSKDSK+P PPPGHKWKEVR DN VTWLASWTEN+Q
Sbjct: 342 RGDHPKMGMLKKRIMPEDVIINCSKDSKIPEPPPGHKWKEVRFDNTVTWLASWTENIQNS 401
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSSKLKGEKDWQKYE AR+L ++KIR Y+ DWKS+EM+ RQRAVALYFID
Sbjct: 402 IKYIMLNPSSKLKGEKDWQKYEVARRLKGVVDKIRFQYRFDWKSREMKXRQRAVALYFID 461
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHIQL+ E DG+ +VV FDFLGKDSIRYYN+VPV
Sbjct: 462 KLALRAGNEKEEGETADTVGCCSLRVEHIQLYHELDGQEHVVEFDFLGKDSIRYYNKVPV 521
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V ++ + AK+ +YN
Sbjct: 522 EKPVTED--------------------------------NIAAKIL-SYN---------- 538
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
RANRAVA+LCNHQR+ PK+ +KSM NL+ KI+ K++Q+ A++
Sbjct: 539 -----------------RANRAVAILCNHQRATPKTFEKSMQNLQTKINAKKEQLAMAKQ 581
Query: 424 ALKDA------KKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK A KK +S++ DKKK L +L+EQL++L Q TDKEENK +ALGTSKLNY
Sbjct: 582 ELKRAKADAKVKKDVKSESNVDKKKKLLAKLEEQLMRLHTQATDKEENKQVALGTSKLNY 641
Query: 478 LDPRISVTW 486
LDPRISV W
Sbjct: 642 LDPRISVAW 650
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/111 (76%), Positives = 97/111 (87%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+Q +KYIMLNPSSKLKGEKDWQKYE AR+L ++KIR Y+ DWKS+
Sbjct: 387 TVTWLASWTENIQNSIKYIMLNPSSKLKGEKDWQKYEVARRLKGVVDKIRFQYRFDWKSR 446
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHIQL+ E D
Sbjct: 447 EMKXRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIQLYHELD 497
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA +F F
Sbjct: 660 KIYNKTQREKFAWAIDMADEEFEF 683
>gi|167527420|ref|XP_001748042.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773460|gb|EDQ87099.1| predicted protein [Monosiga brevicollis MX1]
Length = 2575
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 281/492 (57%), Positives = 349/492 (70%), Gaps = 16/492 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK L +AEEIA FYA M+ +Y K+ FN NFM DWR +MT +ER +TD+ KCDF
Sbjct: 1896 GKPYLLKPEAEEIAGFYAMMLTRDYVHKDIFNENFMHDWRANMTPQERKDLTDIKKCDFS 1955
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+H+++ Q++E RKA SKEEK+K K+ + +EYG +DG K IGNFRIEPPGLF+G
Sbjct: 1956 LIHSHYQQRAEARKAASKEEKEKRKEAEAKLKEEYGFALMDGRKVTIGNFRIEPPGLFQG 2015
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK RV ED+IIN KVP PP GHKWKEV+HDN VTWLA W EN+Q Q
Sbjct: 2016 RGEHPKMGKLKLRVMPEDVIINVGPKDKVPEPPAGHKWKEVKHDNTVTWLAGWKENIQDQ 2075
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYIML+ + +KG DW+KYETARKL + ++KIR +Y D KSK M RQRA ALYFID
Sbjct: 2076 NKYIMLSADTHIKGRNDWKKYETARKLKEHVDKIRRDYTRDLKSKLMFERQRATALYFID 2135
Query: 245 KLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAG EKD E+QADTVGCCSLRVEH++L + + FDFLGKDSIRY N+V V
Sbjct: 2136 KLALRAGGEKDAEEQADTVGCCSLRVEHLELLPGDE-----LVFDFLGKDSIRYQNQVKV 2190
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
+ +V+KN+ F ++K+ D+LFDRL T LN++L LM+GLTAKVFRTYNASITLQ QL
Sbjct: 2191 DHQVWKNVGHFKKSKEPGDELFDRLRTQQLNEYLQSLMDGLTAKVFRTYNASITLQDQLK 2250
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQ----VK 419
E EK+LAY RANRAVA+LCNHQR+ PK+HD+ M L E + +K+ +K
Sbjct: 2251 STPAGGTVE-EKLLAYQRANRAVAILCNHQRAAPKTHDEQMERLDEALVKIQKELDSTIK 2309
Query: 420 DAERALKDAKKAGESKAMTDKK-----KTALGRLKEQLLKLEVQETDKEENKTIALGTSK 474
+ ++ KD + G + TD K + RL+E+L K ++ + DKEENK IAL TSK
Sbjct: 2310 ERKKLKKDLRAQGSDVSKTDLNRLDVLKRKVDRLEERLHKKQIAKVDKEENKCIALSTSK 2369
Query: 475 LNYLDPRISVTW 486
LNYLDPRISV W
Sbjct: 2370 LNYLDPRISVAW 2381
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/106 (67%), Positives = 85/106 (80%), Gaps = 1/106 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W EN+Q Q KYIML+ + +KG DW+KYETARKL + ++KIR +Y D KSK
Sbjct: 2061 TVTWLAGWKENIQDQNKYIMLSADTHIKGRNDWKKYETARKLKEHVDKIRRDYTRDLKSK 2120
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQL 587
M RQRA ALYFIDKLALRAG EKD E+QADTVGCCSLRVEH++L
Sbjct: 2121 LMFERQRATALYFIDKLALRAGGEKDAEEQADTVGCCSLRVEHLEL 2166
>gi|326432616|gb|EGD78186.1| DNA binding/DNA topoisomerase type I [Salpingoeca sp. ATCC 50818]
Length = 791
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 281/493 (56%), Positives = 347/493 (70%), Gaps = 21/493 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK AEE+ATFYA M+E +Y K FN NF DW+ +MT +E+ I DL KCDF
Sbjct: 276 GKPYHFEPAAEEVATFYAAMLERDYVKKPVFNKNFFADWKTTMTAQEKKDIKDLKKCDFS 335
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+H + Q++EERK SKEEK+K K+EN+ I +EYG IDG + +GNF+IEPPGLF+G
Sbjct: 336 LIHRFLKQRAEERKGASKEEKQKRKEENDKIKQEYGFAIIDGRRAPVGNFKIEPPGLFQG 395
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLKRRV E +IIN K++KVP PP GH+WKEVRHDN+V+WLA+W EN+Q
Sbjct: 396 RGEHPKMGKLKRRVLPEQVIINIGKEAKVPEPPAGHRWKEVRHDNKVSWLAAWVENIQKS 455
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+ML P S +KG DW+KYE AR L K + KIR++Y KSK M RQR+ ALYFID
Sbjct: 456 NKYVMLAPDSHIKGRTDWKKYELARSLHKCVQKIRDDYTKGLKSKLMFERQRSTALYFID 515
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAG EKD D+ ADTVGCCSLRVEH+ + + + FDFLGKDSIRYYN+V V
Sbjct: 516 KLALRAGGEKDADESADTVGCCSLRVEHVTPLPDDE-----LEFDFLGKDSIRYYNKVKV 570
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
+ RV+KN+ F + K DDLFDRL+TS+LN++L ELM GL+AKVFRTYNASITLQ QL
Sbjct: 571 DHRVWKNIGHFKKGKSEGDDLFDRLSTSLLNEYLKELMPGLSAKVFRTYNASITLQDQLK 630
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
D S EK+LAY RANR VA+LCNHQR+ PK+HDK M + E I +++KD
Sbjct: 631 S-TPVDGSIEEKMLAYQRANRQVAILCNHQRAAPKTHDKQMERMDEAI----QKIKDDIA 685
Query: 424 ALKDAKKAGESKAMTDKK----------KTALGRLKEQLLKLEVQETDKEENKTIALGTS 473
K +KA +++ T + K L RL+ +L K E+ + DKEENKTIAL TS
Sbjct: 686 KTKKERKALKAEVRTHTQSHTGCCIEGMKRKLERLELRLKKKEIAKIDKEENKTIALSTS 745
Query: 474 KLNYLDPRISVTW 486
KLNYLDPRISV W
Sbjct: 746 KLNYLDPRISVAW 758
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 78/103 (75%), Gaps = 1/103 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
V+WLA+W EN+Q KY+ML P S +KG DW+KYE AR L K + KIR++Y KSK
Sbjct: 442 VSWLAAWVENIQKSNKYVMLAPDSHIKGRTDWKKYELARSLHKCVQKIRDDYTKGLKSKL 501
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHI 585
M RQR+ ALYFIDKLALRAG EKD D+ ADTVGCCSLRVEH+
Sbjct: 502 MFERQRSTALYFIDKLALRAGGEKDADESADTVGCCSLRVEHV 544
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
K+YN TQR KFRWAI+M DFVF
Sbjct: 768 KVYNPTQRRKFRWAIEMVDKDFVF 791
>gi|119602670|gb|EAW82264.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_e [Homo sapiens]
Length = 540
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 262/489 (53%), Positives = 331/489 (67%), Gaps = 68/489 (13%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ ++LS AEE+ATFY RM++HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 80 GRPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFT 139
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +S+EEK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRG
Sbjct: 140 EIHRYFVDKAAARKVLSREEKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRG 199
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ
Sbjct: 200 RGDHPKMGMLKRRITPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNS 259
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 260 IKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 319
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLH-EEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
K+ + ++QL E KD P FD L S+
Sbjct: 320 KVVYK---------------------NLQLFMENKD--PRDDLFDRLTTTSL-------- 348
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
NKHL ELM+GLTAKVFRTYNASITLQ+QL
Sbjct: 349 ------------------------------NKHLQELMDGLTAKVFRTYNASITLQEQLR 378
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A
Sbjct: 379 ALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARA 438
Query: 424 ALKD------AKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A+ G+S+++ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNY
Sbjct: 439 ELRRARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNY 498
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 499 LDPRISIAW 507
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 67/80 (83%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 245 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 304
Query: 543 EMRIRQRAVALYFIDKLALR 562
EM+ RQRAVALYFIDK+ +
Sbjct: 305 EMKTRQRAVALYFIDKVVYK 324
>gi|194381908|dbj|BAG64323.1| unnamed protein product [Homo sapiens]
Length = 477
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/363 (66%), Positives = 290/363 (79%), Gaps = 7/363 (1%)
Query: 131 MGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIML 190
MG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE++Q +KYIML
Sbjct: 1 MGMLKRRITPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESIQNSIKYIML 60
Query: 191 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 250
NP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFIDKLALRA
Sbjct: 61 NPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRA 120
Query: 251 GNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFK 309
GNEK D + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPVEK V+K
Sbjct: 121 GNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYK 180
Query: 310 NLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPD 369
NLQLF+ENK DDLFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL L +
Sbjct: 181 NLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAE 240
Query: 370 FSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKD-- 427
S A KIL+YNRANR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A L+
Sbjct: 241 DSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRAR 300
Query: 428 ----AKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRIS 483
A+ G+S+++ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNYLDPRIS
Sbjct: 301 AEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRIS 360
Query: 484 VTW 486
+ W
Sbjct: 361 IAW 363
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE++Q +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 40 TVTWLAAWTESIQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 99
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 100 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 150
>gi|402696586|gb|AFQ91785.1| DNA topoisomerase 1, partial [Leptanilla sp. ZA01]
Length = 293
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 225/279 (80%), Positives = 256/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN+NF DWR+ MT+ ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNSNFFHDWREVMTDSERAKIVDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF+QKSEERKAM+KE+K+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHVYFLQKSEERKAMTKEDKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKW+E+RHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWREIRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KDGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIILHEQKDGKEY 293
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/151 (72%), Positives = 123/151 (81%), Gaps = 1/151 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKYIML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWREIRHDSNVTWLASWTENIQGQVKYIML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
GNEKDEDQADTVGCCSLRVEHI LHE+KD K
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIILHEQKDGK 291
>gi|336371393|gb|EGN99732.1| hypothetical protein SERLA73DRAFT_106466 [Serpula lacrymans var.
lacrymans S7.3]
Length = 883
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 255/548 (46%), Positives = 345/548 (62%), Gaps = 67/548 (12%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE---KERAVITD 57
M+ GK + L AEE+A FYA M+E E+ FN NF +DW+K + + + + IT+
Sbjct: 291 MKYNGKPVDLDPIAEEVAGFYAAMLETEHAQDNTFNKNFFEDWKKVLKDAPPRNKIKITN 350
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
CDFR M+ YF + ++KAM+ EKK++K + +A ++Y C +DG KEK+GNFR+E
Sbjct: 351 FEHCDFRPMYEYFEGEKAKKKAMTTAEKKELKKQKDAYEEKYVTCVLDGRKEKVGNFRVE 410
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRG+HPK G LK RV+ EDI IN +S +P P WK++ HD VTWLA+W
Sbjct: 411 PPGLFRGRGDHPKKGALKFRVRPEDITINIGAESHIPIPNMPGTWKQIIHDKTVTWLANW 470
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
EN+ G KY+ L S LKG+ D K+E AR+L K +++IR++Y AD +SK M RQRA
Sbjct: 471 VENINGNHKYVFLAAGSSLKGQSDMSKFEKARELKKHVDRIRQDYNADLRSKIMADRQRA 530
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
A+YFID+LALRAGNEK ED+ADTVGCCSLR EH+ L P + FDFLGKDSIRY
Sbjct: 531 TAMYFIDRLALRAGNEKGEDEADTVGCCSLRCEHVTLE-----APNFIIFDFLGKDSIRY 585
Query: 298 YNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
YN V VE +VFKN++ F ENK+ +D+LFDR+NT++LNKHL M+GLTAKVFRTYNASIT
Sbjct: 586 YNRVAVEFQVFKNIRYFKENKEDNDNLFDRVNTTLLNKHLQSYMKGLTAKVFRTYNASIT 645
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLK--------- 408
Q+QL+E + + EK+ AYN ANR VA+LCNHQRS PK+H++SM ++
Sbjct: 646 FQEQLDESTPENATVQEKLNAYNHANRMVAILCNHQRSAPKTHEQSMEKMRDRKKKPYAN 705
Query: 409 --------------EKISNK------RKQVKDAERALKDAKKAGESKAMTD--------- 439
E + NK +K KD E+ +++ K + A+ D
Sbjct: 706 DESDLDDDWIEQHEESLKNKDIEKAQKKFAKDNEKLVEEGKAPLDESALQDKIDSIEADY 765
Query: 440 --------------KKKTALGRLKEQLLKLE-------VQETDKEENKTIALGTSKLNYL 478
K++ + +L+E + KL+ +Q D+E K +ALGTSK+NYL
Sbjct: 766 EKLVSERGTERATLKRERPIEKLEENIQKLDEKMKTFKLQMDDREAGKEVALGTSKINYL 825
Query: 479 DPRISVTW 486
DPRI+ W
Sbjct: 826 DPRITAAW 833
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 81/105 (77%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+W EN+ G KY+ L S LKG+ D K+E AR+L K +++IR++Y AD +SK
Sbjct: 463 TVTWLANWVENINGNHKYVFLAAGSSLKGQSDMSKFEKARELKKHVDRIRQDYNADLRSK 522
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M RQRA A+YFID+LALRAGNEK ED+ADTVGCCSLR EH+ L
Sbjct: 523 IMADRQRATAMYFIDRLALRAGNEKGEDEADTVGCCSLRCEHVTL 567
>gi|402696600|gb|AFQ91792.1| DNA topoisomerase 1, partial [Leptanilla sp. GR03]
gi|402696602|gb|AFQ91793.1| DNA topoisomerase 1, partial [Leptanilla sp. GR03]
gi|402696604|gb|AFQ91794.1| DNA topoisomerase 1, partial [Leptanilla sp. GR03]
Length = 293
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 224/279 (80%), Positives = 255/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS+D EE+ATFYARM++H+YTTK AFN NF DWR+ MT+ ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEDTEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTDSERAKIVDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF+QKSEERKAM+KE+K+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHVYFLQKSEERKAMTKEDKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKW+E+RHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWREIRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEH+ LHE+KDG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHLILHEQKDGREY 293
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 107/149 (71%), Positives = 122/149 (81%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKYIML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWREIRHDSNVTWLASWTENIQGQVKYIML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEH+ LHE+KD
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHLILHEQKD 289
>gi|402696594|gb|AFQ91789.1| DNA topoisomerase 1, partial [Leptanilla sp. GR02]
gi|402696596|gb|AFQ91790.1| DNA topoisomerase 1, partial [Leptanilla sp. GR02]
gi|402696598|gb|AFQ91791.1| DNA topoisomerase 1, partial [Leptanilla sp. GR02]
Length = 293
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 224/279 (80%), Positives = 253/279 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS+D EE+ATFYARM++H+YTTK AFN NF DWR+ MT+ ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEDTEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTDSERAKIVDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF+QKSEERKA++KE+K+KIK++NE I KEYG C IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHVYFLQKSEERKALTKEDKQKIKEKNEEIQKEYGFCKIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLKRRV ED++INCSKDS +P PP GHKW+E+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKRRVLPEDVLINCSKDSNIPKPPTGHKWREIRHDTNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEH+ LHE+KDGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHLILHEQKDGKEY 293
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/151 (71%), Positives = 122/151 (80%), Gaps = 1/151 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK ++L +V K+ N K + +VTWLASWTEN+QGQVKYIML
Sbjct: 141 MGKLKRRVLPEDVLINCSKDSNIPKPPTGHKWREIRHDTNVTWLASWTENIQGQVKYIML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
GNEKDEDQADTVGCCSLRVEH+ LHE+KD K
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHLILHEQKDGK 291
>gi|402696590|gb|AFQ91787.1| DNA topoisomerase 1, partial [Leptanilla sp. GR01]
gi|402696592|gb|AFQ91788.1| DNA topoisomerase 1, partial [Leptanilla sp. GR01]
Length = 293
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 224/279 (80%), Positives = 254/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS+D EE+ATFYARM++H+YTTK AFN NF DWR+ MT+ ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEDTEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTDSERAKIVDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF+QKSEERKAM+KE+K+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHVYFLQKSEERKAMTKEDKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKW+E+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWREIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEH+ LHE+KDG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHLILHEQKDGREY 293
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/149 (71%), Positives = 122/149 (81%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKYIML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWREIRHDPNVTWLASWTENIQGQVKYIML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEH+ LHE+KD
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHLILHEQKD 289
>gi|402696584|gb|AFQ91784.1| DNA topoisomerase 1, partial [Protanilla sp. JP01]
Length = 293
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 224/279 (80%), Positives = 255/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN+NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKSAFNSNFFHDWREVMTESERARIHDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF+QKSEERKAM+K+EK KIK++NE I KEYG C IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHEYFLQKSEERKAMTKDEKHKIKEKNEEIQKEYGFCVIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVIPEDVLINCSKDSNIPKPPTGHKWKEIRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYKEDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEH++LHE+KDG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHLKLHEQKDGREY 293
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/110 (90%), Positives = 107/110 (97%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKYIMLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYKEDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH++LHE+KD
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHLKLHEQKD 289
>gi|380699363|gb|AFD94974.1| topoisomerase I, partial [Stenamma sardoum]
Length = 293
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 225/279 (80%), Positives = 254/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFNTNF +DWR++MTE ERA ITDL KC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKPAFNTNFFQDWRENMTESERAKITDLPKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+ KSEERKAM++EEK+KIK++NE I KEYG C+IDGH EKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLLKSEERKAMTREEKQKIKEKNEEIQKEYGFCSIDGHTEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S VP PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKGSNVPKPPAGHKWKEVRHDTNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGKEY 293
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 107/151 (70%), Positives = 121/151 (80%), Gaps = 1/151 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKGSNVPKPPAGHKWKEVRHDTNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
GNEKDEDQADTVGCCSLRVEHI LHE +D K
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHITLHEHRDGK 291
>gi|402696588|gb|AFQ91786.1| DNA topoisomerase 1, partial [Leptanilla sp. TH01]
Length = 293
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 225/279 (80%), Positives = 253/279 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS+D EE+ATFYARM++H+YTTK AFN NF DWR+ MT+ ERA ITDLSKC+F
Sbjct: 15 GKEMKLSEDTEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTDSERAKITDLSKCNFN 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF+QKSEERKAM+KE+K+KIK++NE I KEYG C IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHVYFLQKSEERKAMTKEDKQKIKEKNEEIQKEYGFCIIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV D++INCSKDS +P PPGHKW+EVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPADVLINCSKDSNMPKAPPGHKWREVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEH+ LHE+KDGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHLILHEQKDGKEY 293
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 109/151 (72%), Positives = 124/151 (82%), Gaps = 1/151 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N A K + +VTWLASWTEN+QGQVKYIML
Sbjct: 141 MGKLKKRVLPADVLINCSKDSNMPKAPPGHKWREVRHDSNVTWLASWTENIQGQVKYIML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
GNEKDEDQADTVGCCSLRVEH+ LHE+KD K
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHLILHEQKDGK 291
>gi|380699325|gb|AFD94955.1| topoisomerase I, partial [Stenamma sp. mgb05]
Length = 293
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 223/279 (79%), Positives = 254/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFN NF DWR +MTE ERA ITDLSKC+F+
Sbjct: 15 GEEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRNNMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+ EEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVSKSEERKAMTTEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASW EN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPVGHKWKEVRHDSNVTWLASWRENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEM IRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMCIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGN+KD+DQADTVGCCSLRVEHI+LHE++DGK Y
Sbjct: 255 KLALRAGNKKDKDQADTVGCCSLRVEHIKLHEQRDGKQY 293
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/152 (67%), Positives = 123/152 (80%), Gaps = 1/152 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASW EN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPVGHKWKEVRHDSNVTWLASWRENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEM IRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMCIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKDEKK 595
GN+KD+DQADTVGCCSLRVEHI+LHE++D K+
Sbjct: 261 GNKKDKDQADTVGCCSLRVEHIKLHEQRDGKQ 292
>gi|380699273|gb|AFD94929.1| topoisomerase I, partial [Messor andrei]
Length = 293
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/279 (83%), Positives = 258/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLSQ+ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSQNTEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PPPGHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKDSNIPKPPPGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGKEY 293
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/116 (87%), Positives = 110/116 (94%), Gaps = 2/116 (1%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ D
Sbjct: 178 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRED 235
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++D K
Sbjct: 236 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGK 291
>gi|380699267|gb|AFD94926.1| topoisomerase I, partial [Aphaenogaster albisetosa]
Length = 293
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/279 (83%), Positives = 258/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLSQ+ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GKEMKLSQNTEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG C IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCIIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PPPGHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKDSNIPKPPPGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGKEY 293
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/116 (87%), Positives = 110/116 (94%), Gaps = 2/116 (1%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ D
Sbjct: 178 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRED 235
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++D K
Sbjct: 236 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGK 291
>gi|380699279|gb|AFD94932.1| topoisomerase I, partial [Pogonomyrmex subdentatus]
Length = 293
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/279 (83%), Positives = 257/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLSQD EE+ATFYARM++H+YTTK FN NF DWR+ MTE ERA ITDL+KC+F+
Sbjct: 15 GKEMKLSQDTEEVATFYARMLDHDYTTKATFNNNFFHDWREVMTESERAKITDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PPPGHKWKEVRHD VTWLASWTENVQGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPPGHKWKEVRHDPNVTWLASWTENVQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQKDGKEY 293
Score = 215 bits (547), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 109/151 (72%), Positives = 124/151 (82%), Gaps = 1/151 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTENVQGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPPGHKWKEVRHDPNVTWLASWTENVQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
GNEKDEDQADTVGCCSLRVEHI+LHE+KD K
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQKDGK 291
>gi|380699271|gb|AFD94928.1| topoisomerase I, partial [Aphaenogaster swammerdami]
Length = 293
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/279 (82%), Positives = 259/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS+D EEIATFYARM++H+YTTK AFN+NF DWR+ MTE ERA ITDLSKC+F+
Sbjct: 15 GKEMKLSEDTEEIATFYARMLDHDYTTKPAFNSNFFHDWREMMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG C IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCIIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK+S +P PPPGHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVMPEDVLINCSKNSNIPKPPPGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGREY 293
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 98/110 (89%), Positives = 107/110 (97%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++D
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRD 289
>gi|380699333|gb|AFD94959.1| topoisomerase I, partial [Stenamma sp. mgb11]
Length = 293
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 230/279 (82%), Positives = 259/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS+D EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GKEMKLSEDTEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDSK+P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSKIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGRQY 293
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 98/110 (89%), Positives = 107/110 (97%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++D
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRD 289
>gi|380699275|gb|AFD94930.1| topoisomerase I, partial [Messor denticornis]
Length = 293
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/279 (82%), Positives = 257/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS+D EEIATFYARM++H+YTTK AFN NF DWR+ MTE ERA ITDLSKC+F+
Sbjct: 15 GKEMKLSEDTEEIATFYARMLDHDYTTKAAFNNNFFTDWREMMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+ KSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLMKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE+++GK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRNGKEY 293
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 106/151 (70%), Positives = 124/151 (82%), Gaps = 1/151 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
GNEKDEDQADTVGCCSLRVEHI+LHE+++ K
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRNGK 291
>gi|380699357|gb|AFD94971.1| topoisomerase I, partial [Stenamma sp. mgb78]
Length = 293
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/279 (81%), Positives = 258/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE +DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEHRDGREY 293
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/149 (70%), Positives = 122/149 (81%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK++++ +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVVPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE +D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEHRD 289
>gi|380699337|gb|AFD94961.1| topoisomerase I, partial [Stenamma sp. mgb16]
Length = 293
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/279 (81%), Positives = 258/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++HEYTTK AFN NF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHEYTTKAAFNNNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE +DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEHRDGRDY 293
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/149 (70%), Positives = 122/149 (81%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK++++ +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVVPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE +D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEHRD 289
>gi|380699269|gb|AFD94927.1| topoisomerase I, partial [Aphaenogaster occidentalis]
Length = 293
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 229/279 (82%), Positives = 257/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS+D EEIATFYARM++H+YTTK AFN NF DWR+ MTE ERA ITDLSKC+F+
Sbjct: 15 GKEMKLSEDTEEIATFYARMLDHDYTTKAAFNNNFFTDWREMMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+ KSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE+++GK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRNGKEY 293
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 106/151 (70%), Positives = 124/151 (82%), Gaps = 1/151 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
GNEKDEDQADTVGCCSLRVEHI+LHE+++ K
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRNGK 291
>gi|380699283|gb|AFD94934.1| topoisomerase I, partial [Stenamma alas]
gi|380699303|gb|AFD94944.1| topoisomerase I, partial [Stenamma expolitum]
Length = 293
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/279 (81%), Positives = 258/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGRQY 293
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/149 (71%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE++D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRD 289
>gi|380699375|gb|AFD94980.1| topoisomerase I, partial [Stenamma striatulum]
Length = 293
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 228/279 (81%), Positives = 257/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMK+S++ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GREMKVSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGKEY 293
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/151 (70%), Positives = 122/151 (80%), Gaps = 1/151 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
GNEKDEDQADTVGCCSLRVEHI LHE +D K
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHITLHEHRDGK 291
>gi|380699365|gb|AFD94975.1| topoisomerase I, partial [Stenamma schmidti]
Length = 293
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/279 (81%), Positives = 256/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EEIATFYARM++H+YTTK AFN NF DWR+SMTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEIATFYARMLDHDYTTKTAFNMNFFHDWRESMTESERAKIIDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKLKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS VP PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNVPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRSEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGRQY 293
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/149 (71%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNVPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRSEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE++D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRD 289
>gi|380699307|gb|AFD94946.1| topoisomerase I, partial [Stenamma foveolocephalum]
Length = 293
Score = 476 bits (1226), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/279 (81%), Positives = 257/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFN NF +DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE + KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S VP PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVMPEDVLINCSKGSNVPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGKEY 293
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/112 (88%), Positives = 106/112 (94%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE +D K
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGK 291
>gi|380699355|gb|AFD94970.1| topoisomerase I, partial [Stenamma sp. mgb66]
Length = 293
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/279 (81%), Positives = 257/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
KEMKLS+D EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 SKEMKLSEDTEEIATFYARMLDHDYTTKSAFNNNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGRQY 293
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/149 (71%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE++D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRD 289
>gi|380699277|gb|AFD94931.1| topoisomerase I, partial [Myrmica striolagaster]
Length = 293
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/279 (81%), Positives = 256/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKL+QD EE+ATFYARM++H+YTTK AFN+NF DWR+ MTE ERA I+DLSKC+F+
Sbjct: 15 GKEMKLTQDTEEVATFYARMLDHDYTTKPAFNSNFFHDWREVMTESERAKISDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHVYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S VP PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKVSNVPKPPAGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQKDGREY 293
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/114 (88%), Positives = 109/114 (95%), Gaps = 2/114 (1%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ D
Sbjct: 178 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRED 235
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD
Sbjct: 236 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQKD 289
>gi|380699289|gb|AFD94937.1| topoisomerase I, partial [Stenamma chiricahua]
gi|380699315|gb|AFD94950.1| topoisomerase I, partial [Stenamma impar]
gi|380699361|gb|AFD94973.1| topoisomerase I, partial [Stenamma punctatoventre]
gi|380699371|gb|AFD94978.1| topoisomerase I, partial [Stenamma smithi]
Length = 293
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/279 (81%), Positives = 257/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFN NF +DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE + KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S VP PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKGSNVPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGKEY 293
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 99/112 (88%), Positives = 106/112 (94%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE +D K
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGK 291
>gi|380699285|gb|AFD94935.1| topoisomerase I, partial [Stenamma brevicorne]
Length = 293
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 228/279 (81%), Positives = 257/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKL+++ EEIATFYARM++H+YTTK AFN NF +DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GKEMKLNEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S VP PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKGSNVPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGKEY 293
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 99/112 (88%), Positives = 106/112 (94%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE +D K
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGK 291
>gi|380699287|gb|AFD94936.1| topoisomerase I, partial [Stenamma californicum]
Length = 293
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/279 (81%), Positives = 257/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFN NF +DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE + KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKGSNIPKPPSGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGKEY 293
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 99/112 (88%), Positives = 106/112 (94%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE +D K
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGK 291
>gi|380699331|gb|AFD94958.1| topoisomerase I, partial [Stenamma sp. mgb102]
Length = 293
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/279 (81%), Positives = 257/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFNTNF +DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFQDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE + KEYG C+IDGH EKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHTEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV E+++INCSK S +P PP GHKWKEVRHD+ VTWLASWTENVQGQ
Sbjct: 135 RGEHPKMGKLKKRVMPEEVLINCSKGSNIPKPPAGHKWKEVRHDSNVTWLASWTENVQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRDDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGKEY 293
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/151 (71%), Positives = 121/151 (80%), Gaps = 1/151 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK++++ EV K N K + +VTWLASWTENVQGQVKY+ML
Sbjct: 141 MGKLKKRVMPEEVLINCSKGSNIPKPPAGHKWKEVRHDSNVTWLASWTENVQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRDDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
GNEKDEDQADTVGCCSLRVEHI LHE +D K
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHITLHEHRDGK 291
>gi|380699323|gb|AFD94954.1| topoisomerase I, partial [Stenamma sp. mgb02]
Length = 293
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/279 (81%), Positives = 258/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE+++G+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQREGRQY 293
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 105/149 (70%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE+++
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRE 289
>gi|380699347|gb|AFD94966.1| topoisomerase I, partial [Stenamma sp. mgb38]
Length = 293
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/279 (81%), Positives = 257/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
KEMKLS++ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 SKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGRQY 293
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/149 (71%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE++D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRD 289
>gi|380699373|gb|AFD94979.1| topoisomerase I, partial [Stenamma snellingi]
Length = 293
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/279 (81%), Positives = 255/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFNTNF +DWR++MTE ERA ITDL KC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFQDWRENMTESERAKITDLPKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG C+IDGH EKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S VP PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKGSNVPKPPAGHKWKEVRHDTNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGKEY 293
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/112 (88%), Positives = 106/112 (94%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE +D K
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGK 291
>gi|380699343|gb|AFD94964.1| topoisomerase I, partial [Stenamma sp. mgb28]
Length = 293
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/279 (81%), Positives = 257/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDL KC+F+
Sbjct: 15 GKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLFKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGRQY 293
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/149 (71%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE++D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRD 289
>gi|380699295|gb|AFD94940.1| topoisomerase I, partial [Stenamma diecki]
Length = 293
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 226/279 (81%), Positives = 257/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFN NF +DWR+SMTE ERA ITDLSKC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRESMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++HAYF+QKSEERKAM+KEEK+KIK++NE + KEYG C+IDGH EKIGNF+IEPPGLFRG
Sbjct: 75 EIHAYFLQKSEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHTEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S VP PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKGSNVPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEHRDGKEY 293
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 99/112 (88%), Positives = 107/112 (95%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+LHE +D K
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIKLHEHRDGK 291
>gi|380699313|gb|AFD94949.1| topoisomerase I, partial [Stenamma huachucanum]
Length = 293
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/279 (81%), Positives = 257/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
KEMKLS++ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 SKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGRQY 293
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/149 (71%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE++D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRD 289
>gi|380699351|gb|AFD94968.1| topoisomerase I, partial [Stenamma sp. mgb45]
Length = 293
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/279 (81%), Positives = 256/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
KEMKLS++ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 SKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE++DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEQRDGRQY 293
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/149 (71%), Positives = 122/149 (81%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI LHE++D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHITLHEQRD 289
>gi|380699349|gb|AFD94967.1| topoisomerase I, partial [Stenamma sp. mgb39]
Length = 293
Score = 473 bits (1218), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/279 (80%), Positives = 258/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
+EMKLS++ EEIATFYARM++H+YTTK AFNTNF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 SREMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+ KSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DG+ Y
Sbjct: 255 RLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGRQY 293
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/149 (70%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNMPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID+LALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDRLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE++D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRD 289
>gi|380699367|gb|AFD94976.1| topoisomerase I, partial [Stenamma schmittii]
Length = 293
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/279 (81%), Positives = 255/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFN+NF +DWR++MTE ERA ITDL KC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKAAFNSNFFQDWRENMTESERAKITDLPKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG C+IDGH EKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S VP PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKGSNVPKPPAGHKWKEVRHDTNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGKEY 293
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/112 (88%), Positives = 106/112 (94%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE +D K
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGK 291
>gi|380699353|gb|AFD94969.1| topoisomerase I, partial [Stenamma sp. mgb47]
Length = 293
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/279 (80%), Positives = 256/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDL KC+F+
Sbjct: 15 GKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLFKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK+KIK++NE I KEYG C+IDGH EKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKW+EVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWREVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGRQY 293
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/149 (71%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWREVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE++D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRD 289
>gi|380699339|gb|AFD94962.1| topoisomerase I, partial [Stenamma sp. mgb24]
Length = 293
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/279 (81%), Positives = 256/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDL KC+F+
Sbjct: 15 GKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLFKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INC KDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCPKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGRQY 293
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/149 (71%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCPKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE++D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRD 289
>gi|380699293|gb|AFD94939.1| topoisomerase I, partial [Stenamma diecki]
gi|380699299|gb|AFD94942.1| topoisomerase I, partial [Stenamma dyscheres]
gi|380699301|gb|AFD94943.1| topoisomerase I, partial [Stenamma exasperatum]
gi|380699311|gb|AFD94948.1| topoisomerase I, partial [Stenamma heathi]
Length = 293
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/279 (80%), Positives = 256/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFN NF +DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++HAYF+QKSEERKAM+KEEK+KIK++NE + KEYG C+IDGH EKIGNF+IEPPGLFRG
Sbjct: 75 EIHAYFLQKSEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHTEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S VP PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKGSNVPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGKEY 293
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 99/112 (88%), Positives = 106/112 (94%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE +D K
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGK 291
>gi|380699321|gb|AFD94953.1| topoisomerase I, partial [Stenamma sp. mgb01]
Length = 293
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/279 (81%), Positives = 256/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS + EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GKEMKLSGETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKGSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DG+ Y
Sbjct: 255 RLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGRQY 293
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 105/149 (70%), Positives = 122/149 (81%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKGSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID+LALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDRLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE++D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRD 289
>gi|4165154|gb|AAD08711.1| topoisomerase I [Nicotiana tabacum]
gi|14626487|gb|AAK69776.1| topoisomerase I [Nicotiana tabacum]
Length = 852
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 252/494 (51%), Positives = 326/494 (65%), Gaps = 20/494 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ + EE+AT YA M++ +Y +K F NFM DWRK + + VI +L CDF
Sbjct: 360 GKPVDLTPEQEEVATMYAVMLDTDYMSKLQFKENFMNDWRKILGKNH--VIQNLDDCDFT 417
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + E++K MS + K+ +++E ++Y +DG KEK+GNFR+EPPGLFRG
Sbjct: 418 PIYERPSSEKEKKKQMSTKRKRPLREEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRG 477
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMGKLKRR++ DI IN K + +P P PG +WKEVRHDN VTWLA W + +
Sbjct: 478 RGEHPKMGKLKRRIRPNDITINIGKGAPIPECPIPGERWKEVRHDNTVTWLAFWNDPINP 537
Query: 184 -QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L SS LKG+ D +KYE AR+L I IR Y D+ SK+ RQ AVA Y
Sbjct: 538 REFKYVFLAASSSLKGQSDKEKYEKARRLKDYIEGIRSAYTKDFTSKDPVKRQIAVATYL 597
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+VE+++ P ++ FDFLGKDSIRY NEV
Sbjct: 598 IDKLALRAGNEKDDDEADTVGCCTLKVENVE-----PVPPNILKFDFLGKDSIRYQNEVA 652
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
V K VFK +QLF KKG DDLFD+L+TS LN HL ELM GLTAKVFRTYNAS+TL+QQL
Sbjct: 653 VYKPVFKAIQLFRSGKKGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASVTLEQQL 712
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
+L AEK+ YN AN+ VA++CNHQRSV KSH + L EKI + +++ +
Sbjct: 713 TKLTQ-GGELAEKVAVYNLANKEVAIICNHQRSVSKSHSVQISKLNEKIDELKALLEEFK 771
Query: 423 RALKDAK------KAGESKAMTDKKKTALGRLKEQ----LLKLEVQETDKEENKTIALGT 472
L AK K + KA + AL + +Q + +E Q KEE KT+ALGT
Sbjct: 772 VDLARAKKGKPPLKGADGKAKRNLAPEALQKKIDQTNVKIENIEKQIETKEELKTVALGT 831
Query: 473 SKLNYLDPRISVTW 486
SK+NYLDPRI+V W
Sbjct: 832 SKINYLDPRITVAW 845
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L SS LKG+ D +KYE AR+L I IR Y D+ S
Sbjct: 524 TVTWLAFWNDPINPREFKYVFLAASSSLKGQSDKEKYEKARRLKDYIEGIRSAYTKDFTS 583
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K+ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 584 KDPVKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 628
>gi|380699377|gb|AFD94981.1| topoisomerase I, partial [Stenamma wheelerorum]
Length = 293
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/279 (81%), Positives = 254/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFNTNF +DWR++MTE ERA ITDL KC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFQDWRENMTESERAKITDLLKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+ KSEERKAM+KEEK+KIK++NE I KEYG C+IDGH EKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S VP PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVMPEDVLINCSKGSNVPKPPAGHKWKEVRHDTNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGKEY 293
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/112 (88%), Positives = 106/112 (94%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE +D K
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGK 291
>gi|440804820|gb|ELR25686.1| eukaryotic dna topoisomerase, putative [Acanthamoeba castellanii
str. Neff]
Length = 782
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 258/511 (50%), Positives = 342/511 (66%), Gaps = 35/511 (6%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV---ITDLSKC 61
G+ ++L+ + EE AT+YA+ +E ++ K+ FN NF KD+R ++ + AV +T C
Sbjct: 260 GEPVELTSEQEEAATYYAQYLETDHVKKKTFNENFFKDFR-ALLKSTPAVYKRVTKFDLC 318
Query: 62 DFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGL 121
DF K++A+ Q+ EE+K +KE+K+K K+E E IT++YG +DGHK KIGN+R+EPPGL
Sbjct: 319 DFTKINAFLQQRKEEKKTRTKEDKQKEKEEKEKITEKYGFALVDGHKVKIGNYRVEPPGL 378
Query: 122 FRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTEN 180
F GRG HPK G LK+R+ ED+ IN KD+KVP P PGHKW V H+N VTWLA W E
Sbjct: 379 FLGRGAHPKTGHLKKRIMPEDVTINIGKDAKVPKCPIPGHKWGTVTHNNTVTWLAMWKET 438
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ G KY+ L+ SS +KG+ D +K+ET+RKL I+KIR+NY D KSKE RQRA AL
Sbjct: 439 INGGFKYVWLSASSHIKGQSDMKKFETSRKLKNHIDKIRKNYMKDLKSKEKLERQRATAL 498
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
+ ID LALR GNEK +D+ADTVGCCSLRVEH++ E P + FDFLGKDS+RY N
Sbjct: 499 WVIDHLALRVGNEKGDDEADTVGCCSLRVEHVECIE-----PATIKFDFLGKDSMRYENS 553
Query: 301 VPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
V + +FKN LF + KK +DDLFDRL T+ LN +L LM GLTAKVFRTYNAS TLQQ
Sbjct: 554 TEVPRVIFKNFCLFRKGKKPADDLFDRLTTTNLNSYLKSLMPGLTAKVFRTYNASFTLQQ 613
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSM---GNLKEKISNKRKQ 417
+LN+ M D + AEK+L YNRANR VA+LCNHQRSVPKSH M NL E++ ++K+
Sbjct: 614 ELNKPMPRDLNVAEKVLHYNRANRQVAILCNHQRSVPKSHSAQMEKLKNLVEELEAEKKK 673
Query: 418 VKDAERALK--------------------DAKKAGESKAMTDKK--KTALGRLKEQLLKL 455
++ +K KK ++ TD+ K A+ +L E++
Sbjct: 674 LQHRYELVKAGKPLPESESESEEENNEDGTPKKKKKASLPTDRTRIKKAIQKLDERIKNR 733
Query: 456 EVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+V+ K+E KTIALGTSK+NY+DPRI+ W
Sbjct: 734 KVEIEQKDELKTIALGTSKINYMDPRITAAW 764
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 80/107 (74%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W E + G KY+ L+ SS +KG+ D +K+ET+RKL I+KIR+NY D KSK
Sbjct: 428 TVTWLAMWKETINGGFKYVWLSASSHIKGQSDMKKFETSRKLKNHIDKIRKNYMKDLKSK 487
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHE 589
E RQRA AL+ ID LALR GNEK +D+ADTVGCCSLRVEH++ E
Sbjct: 488 EKLERQRATALWVIDHLALRVGNEKGDDEADTVGCCSLRVEHVECIE 534
>gi|380699291|gb|AFD94938.1| topoisomerase I, partial [Stenamma debile]
Length = 293
Score = 471 bits (1213), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/279 (81%), Positives = 254/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFNTNF +DWR++MTE ERA ITDL KC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFQDWRENMTESERAKITDLPKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+ KSEERKAM+KEEK+KIK++NE I KEYG C+IDGH EKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S VP PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKGSNVPKPPAGHKWKEVRHDTNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGKEY 293
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/112 (88%), Positives = 106/112 (94%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE +D K
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGK 291
>gi|380699281|gb|AFD94933.1| topoisomerase I, partial [Solenopsis xyloni]
Length = 293
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/279 (82%), Positives = 255/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA ITDL KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAKITDLFKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M AYFVQKSEERKAM+KEEKKKIK++NE I KEYG C IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMQAYFVQKSEERKAMTKEEKKKIKEKNEEIQKEYGFCIIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCS+DS +P PPPGHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSRDSNIPKPPPGHKWKEVRHDSTVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+L E+KDGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLCEQKDGKEY 293
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/112 (89%), Positives = 107/112 (95%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKYIMLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 TVTWLASWTENIQGQVKYIMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+L E+KD K
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIKLCEQKDGK 291
>gi|380699319|gb|AFD94952.1| topoisomerase I, partial [Stenamma manni]
Length = 293
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/279 (81%), Positives = 256/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDL KC+F+
Sbjct: 15 GKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLFKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVR D+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRRDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGRQY 293
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/149 (71%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRRDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE++D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRD 289
>gi|380699327|gb|AFD94956.1| topoisomerase I, partial [Stenamma sp. mgb10]
Length = 293
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/279 (80%), Positives = 257/279 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDLS+C+F+
Sbjct: 15 GKEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLSRCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP G KWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGRKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE+++G+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQREGRQY 293
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 105/149 (70%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPAGRKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE+++
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRE 289
>gi|380699309|gb|AFD94947.1| topoisomerase I, partial [Stenamma gurkhale]
Length = 293
Score = 471 bits (1212), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/279 (81%), Positives = 254/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EEIATFYARM++H+YTTK AFNTNF +DWR++MTE ERA ITDL KC+F+
Sbjct: 15 GKEMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFQDWRENMTESERAKITDLPKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+ KSEERKAM+KEEK+KIK++NE I KEYG C+IDGH EKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S VP PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKGSNVPKPPAGHKWKEVRHDTNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LH+ +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHDHRDGKEY 293
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/112 (87%), Positives = 106/112 (94%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LH+ +D K
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHDHRDGK 291
>gi|380699317|gb|AFD94951.1| topoisomerase I, partial [Stenamma kashmirense]
Length = 293
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/279 (80%), Positives = 254/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EEIATFYARM++H+YTTK AFNTNF +DWR++MTE ERA ITDL KC+F+
Sbjct: 15 GKEMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFQDWRENMTESERAKITDLPKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+ KSEERKAM+KEEK+KIK++NE I KEYG C+IDGH EKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHP+MGKLK+RV ED++INCSK S VP PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPQMGKLKKRVMPEDVLINCSKGSNVPKPPAGHKWKEVRHDTNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LH+ +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHDHRDGKEY 293
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/112 (87%), Positives = 106/112 (94%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LH+ +D K
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHDHRDGK 291
>gi|380699329|gb|AFD94957.1| topoisomerase I, partial [Stenamma sp. mgb101]
Length = 293
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 225/279 (80%), Positives = 254/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFN+NF +DWR++MTE ERA ITDL KC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKAAFNSNFFQDWRENMTESERAKITDLPKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+ KSEERKAM+KEEK+KIK++NE I KEYG C+IDGH EKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S VP PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKGSNVPKPPAGHKWKEVRHDTNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGKEY 293
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/112 (88%), Positives = 106/112 (94%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE +D K
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGK 291
>gi|380699359|gb|AFD94972.1| topoisomerase I, partial [Stenamma nipponense]
Length = 293
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/279 (80%), Positives = 253/279 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFNTNF +DWR++MTE ERA ITDL KC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKAAFNTNFFQDWRENMTESERAKITDLPKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+ KSEERKAM+KEEK+KIK++NE I KEYG C+IDGH EKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHTEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S VP PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVMPEDVLINCSKGSNVPKPPAGHKWKEVRHDTNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALY ID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYLID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGKEY 293
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/112 (87%), Positives = 105/112 (93%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALY IDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE +D K
Sbjct: 240 EMRIRQRAVALYLIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGK 291
>gi|380699369|gb|AFD94977.1| topoisomerase I, partial [Stenamma sequoiarum]
Length = 293
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/279 (80%), Positives = 255/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFN NF +DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QK+EERKAM+KEEK+KIK++NE + KEYG C+IDGH EKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKTEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHTEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S V PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKGSNVSKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI LHE +DGK Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGKEY 293
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 99/112 (88%), Positives = 106/112 (94%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE +D K
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEHRDGK 291
>gi|380699345|gb|AFD94965.1| topoisomerase I, partial [Stenamma sp. mgb31]
Length = 293
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/279 (79%), Positives = 256/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ E+IATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GREMKLSEETEKIATFYARMLDHDYTTKPAFNNNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KS+ERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSDERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEIRHDPTVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+S++KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSVDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE+ DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQGDGRQY 293
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/149 (70%), Positives = 122/149 (81%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEIRHDPTVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+S++KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSVDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE+ D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQGD 289
>gi|336384149|gb|EGO25297.1| DNA topoisomerase I [Serpula lacrymans var. lacrymans S7.9]
Length = 888
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/414 (53%), Positives = 295/414 (71%), Gaps = 8/414 (1%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE---KERAVITD 57
M+ GK + L AEE+A FYA M+E E+ FN NF +DW+K + + + + IT+
Sbjct: 291 MKYNGKPVDLDPIAEEVAGFYAAMLETEHAQDNTFNKNFFEDWKKVLKDAPPRNKIKITN 350
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
CDFR M+ YF + ++KAM+ EKK++K + +A ++Y C +DG KEK+GNFR+E
Sbjct: 351 FEHCDFRPMYEYFEGEKAKKKAMTTAEKKELKKQKDAYEEKYVTCVLDGRKEKVGNFRVE 410
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRG+HPK G LK RV+ EDI IN +S +P P WK++ HD VTWLA+W
Sbjct: 411 PPGLFRGRGDHPKKGALKFRVRPEDITINIGAESHIPIPNMPGTWKQIIHDKTVTWLANW 470
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
EN+ G KY+ L S LKG+ D K+E AR+L K +++IR++Y AD +SK M RQRA
Sbjct: 471 VENINGNHKYVFLAAGSSLKGQSDMSKFEKARELKKHVDRIRQDYNADLRSKIMADRQRA 530
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
A+YFID+LALRAGNEK ED+ADTVGCCSLR EH+ L P + FDFLGKDSIRY
Sbjct: 531 TAMYFIDRLALRAGNEKGEDEADTVGCCSLRCEHVTLE-----APNFIIFDFLGKDSIRY 585
Query: 298 YNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
YN V VE +VFKN++ F ENK+ +D+LFDR+NT++LNKHL M+GLTAKVFRTYNASIT
Sbjct: 586 YNRVAVEFQVFKNIRYFKENKEDNDNLFDRVNTTLLNKHLQSYMKGLTAKVFRTYNASIT 645
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
Q+QL+E + + EK+ AYN ANR VA+LCNHQRS PK+H++SM +++++
Sbjct: 646 FQEQLDESTPENATVQEKLNAYNHANRMVAILCNHQRSAPKTHEQSMEKMRDRL 699
>gi|380699297|gb|AFD94941.1| topoisomerase I, partial [Stenamma diversum]
Length = 293
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 223/278 (80%), Positives = 256/278 (92%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRK 65
+EMKLS++ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDL KC+F++
Sbjct: 16 REMKLSEETEEIATFYARMLDHDYTTKSAFNNNFFHDWRENMTESERAKITDLFKCNFKE 75
Query: 66 MHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGR 125
MHAYF+ KSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRGR
Sbjct: 76 MHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRGR 135
Query: 126 GEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQV 185
GEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQV
Sbjct: 136 GEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQV 195
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDK 245
KY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDK
Sbjct: 196 KYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDK 255
Query: 246 LALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+++G+ Y
Sbjct: 256 LALRAGNEKDEDQADTVGCCSLRVEHIKLHEQREGRQY 293
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 105/149 (70%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE+++
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRE 289
>gi|392594020|gb|EIW83345.1| hypothetical protein CONPUDRAFT_52328 [Coniophora puteana
RWD-64-598 SS2]
Length = 795
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/414 (54%), Positives = 292/414 (70%), Gaps = 8/414 (1%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE---KERAVITD 57
M+ GKE+ L+ +AEE+A FY M+E ++ FN NF D+ K + + + IT
Sbjct: 198 MKYKGKEVVLTPEAEEVAGFYGAMLETDHAQDATFNKNFFTDFLKVLADYPPRNGIKITK 257
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
CDFR M YF + ++K++S EKK+IK + +A+ ++Y C +DG KEK+GNFR+E
Sbjct: 258 FEDCDFRPMFEYFESEKAKKKSLSTAEKKEIKKQKDALEEKYTSCVLDGRKEKVGNFRVE 317
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRG+HPK G LK RV+ EDI IN P P +WK+V HD VTWLA+W
Sbjct: 318 PPGLFRGRGDHPKKGALKFRVRPEDITINIGAGVPTPVPNMPGQWKQVVHDKTVTWLANW 377
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
ENV G KY+ L S LKG+ D K+E AR+L K +++IR +Y AD KSK M RQRA
Sbjct: 378 VENVNGNYKYVFLAAGSSLKGQSDMAKFEKARELKKHVDRIRSDYTADLKSKVMADRQRA 437
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
A+YFID+LALRAGNEK ED+ADTVGCCSLR EH+ L P + FDFLGKDSIRY
Sbjct: 438 TAMYFIDRLALRAGNEKGEDEADTVGCCSLRCEHVTLEA-----PNFIIFDFLGKDSIRY 492
Query: 298 YNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
YN V V+++VFKN++LF +NK SD+LFDR+NTS+LNKHL+ M+GLTAKVFRTYNASIT
Sbjct: 493 YNRVTVDQQVFKNIRLFKDNKDDSDNLFDRVNTSLLNKHLASYMKGLTAKVFRTYNASIT 552
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
QQQL+E + + EK+ AYN ANR VA+LCNHQRS PK+H++SM ++E++
Sbjct: 553 FQQQLDEGTPEEATVQEKLNAYNHANRMVAILCNHQRSAPKTHEQSMEKMRERL 606
>gi|358415316|ref|XP_003583073.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase I, mitochondrial
[Bos taurus]
gi|359072172|ref|XP_003586922.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase I, mitochondrial
[Bos taurus]
Length = 725
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 258/488 (52%), Positives = 336/488 (68%), Gaps = 12/488 (2%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
+ +S AEE+ATFY + ++ EYT KE F NF DWRK MT +E VI L +CDF ++H
Sbjct: 209 LNVSLAAEEVATFYGKKLDREYT-KEVFQNNFFSDWRKEMTAEEGRVIKHLDRCDFTEIH 267
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGE 127
+ V K+ +KA+S+EEK+K+K+E E + +E+G +DGH+EKIG+F+ E P RGRG+
Sbjct: 268 RHSVDKTASQKALSREEKQKLKEEEEKLQQEFGCSILDGHREKIGSFKTEXPWSVRGRGD 327
Query: 128 HPKMGKLKRRVQAEDIIINCSK--DSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQV 185
HPKM +LKRRV ED++INCS+ DS VP PP G +WKEV D V WLA+WTENVQ +
Sbjct: 328 HPKMERLKRRVLPEDVVINCSRCPDSTVPEPPAGPQWKEVGCDCTVMWLAAWTENVQNFI 387
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDK 245
KY+ LNP KLKGE+DW KYE A +L ++ KI Y+ S EMR RQRAVALYFI+K
Sbjct: 388 KYVTLNPGCKLKGERDWGKYEAAWRLKGAVGKICSQYRTAGTSPEMRTRQRAVALYFINK 447
Query: 246 LALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEK 305
LAL+ E+ GCCSLRVEH+QL+ E G P VV FDFLGKDSIR YN V VEK
Sbjct: 448 LALQ--TGNGEEGGGLGGCCSLRVEHLQLYPEASGSPDVVEFDFLGKDSIRSYNRVLVEK 505
Query: 306 RVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNEL 365
V++NLQLF++NK D LFDRL T+ LN+HL + +GLTA+VFRTYN S+ LQ QL L
Sbjct: 506 PVYRNLQLFMDNKXPRDXLFDRLTTASLNRHLQDPTDGLTARVFRTYNTSVMLQGQLQAL 565
Query: 366 MDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK-ISNKRKQVKDAERA 424
+ S A K+L+YN ANRAV LCNHQ + PK+ +KS L+ I K +QV +A+
Sbjct: 566 PRAEDSVAAKLLSYNXANRAVDFLCNHQCTTPKTFEKSAQMLQSPSIEAKEQQVAEAKTE 625
Query: 425 LKDA------KKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
L++A + G S++ +K+ L +L+EQLL++ Q TDKE +K +ALGTS+L L
Sbjct: 626 LQEAGADHTSRGDGRSQSSLEKRGRLLEKLEEQLLRVSTQATDKEGSKQVALGTSELICL 685
Query: 479 DPRISVTW 486
DPRI VTW
Sbjct: 686 DPRIGVTW 693
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 75/109 (68%), Gaps = 2/109 (1%)
Query: 482 ISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+V WLA+WTENVQ +KY+ LNP KLKGE+DW KYE A +L ++ KI Y+ S
Sbjct: 371 CTVMWLAAWTENVQNFIKYVTLNPGCKLKGERDWGKYEAAWRLKGAVGKICSQYRTAGTS 430
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMR RQRAVALYFI+KLAL+ E+ GCCSLRVEH+QL+ E
Sbjct: 431 PEMRTRQRAVALYFINKLALQ--TGNGEEGGGLGGCCSLRVEHLQLYPE 477
>gi|409080633|gb|EKM80993.1| hypothetical protein AGABI1DRAFT_119530 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 845
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/422 (54%), Positives = 293/422 (69%), Gaps = 12/422 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSM---TEKERAVITD 57
++ GK + L +AEE+A FY M+E + FN NF DW+K M ++ IT
Sbjct: 248 LKYNGKPVDLPPEAEEVAGFYGAMLETPHAQDAVFNKNFFDDWKKVMKNHPARDGTKITS 307
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
CDFR + YF + ++KAM+ EEKK K + + +Y C +DG KEK+GNFR+E
Sbjct: 308 FELCDFRPLFEYFESEKAKKKAMTSEEKKAAKKAKDDMEAKYTFCLLDGRKEKVGNFRVE 367
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRGEHP+ G LK RV+ EDI +N KD+ +P P WK ++HDN VTWLA+W
Sbjct: 368 PPGLFRGRGEHPRKGALKSRVRPEDITLNIGKDAPIPIPNVPGNWKALQHDNTVTWLANW 427
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
TEN+ G KY+ L S LKG+ D QK+E AR+L +++IR+NYQ+D KSK M RQRA
Sbjct: 428 TENINGNHKYVFLAAGSTLKGQSDMQKFEKARELKNHVDRIRQNYQSDLKSKVMADRQRA 487
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
A+YFIDKLALRAGNEK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIRY
Sbjct: 488 TAMYFIDKLALRAGNEKGEDEADTVGCCSLRCEHVTLE-----APNSVIFDFLGKDSIRY 542
Query: 298 YNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
YN+VPVE +VFKN+++F ENK D LFDR+NTS LNKHL+ M+GLTAKVFRT+NAS T
Sbjct: 543 YNKVPVEPQVFKNIRIFKENKNDDDSLFDRVNTSSLNKHLNNEMKGLTAKVFRTFNASST 602
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQ 417
Q+ L+E D + EK+ AYN+ANR VA+LCNHQR+ PK+HD+SM E++ NK +
Sbjct: 603 FQRLLDEHKFTDATLQEKLNAYNKANREVAILCNHQRTAPKTHDQSM----ERMRNKYRA 658
Query: 418 VK 419
+K
Sbjct: 659 LK 660
>gi|426197547|gb|EKV47474.1| hypothetical protein AGABI2DRAFT_185414 [Agaricus bisporus var.
bisporus H97]
Length = 845
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/418 (54%), Positives = 291/418 (69%), Gaps = 12/418 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSM---TEKERAVITDLSKC 61
GK + L +AEE+A FY M+E + FN NF DW+K M ++ IT C
Sbjct: 252 GKPVDLPPEAEEVAGFYGAMLETPHAQDAVFNKNFFDDWKKVMKNHPARDGTKITSFELC 311
Query: 62 DFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGL 121
DFR + YF + ++KAM+ EEKK K + + +Y C +DG KEK+GNFR+EPPGL
Sbjct: 312 DFRPLFEYFESEKAKKKAMTSEEKKAAKKAKDDMEAKYTFCLLDGRKEKVGNFRVEPPGL 371
Query: 122 FRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENV 181
FRGRGEHP+ G LK RV+ EDI +N KD+ +P P WK ++HDN VTWLA+WTEN+
Sbjct: 372 FRGRGEHPRKGALKSRVRPEDITLNIGKDAPIPIPNVPGNWKALQHDNTVTWLANWTENI 431
Query: 182 QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALY 241
G KY+ L S LKG+ D QK+E AR+L +++IR+NYQ+D KSK M RQRA A+Y
Sbjct: 432 NGNHKYVFLAAGSTLKGQSDMQKFEKARELKNHVDRIRQNYQSDLKSKVMADRQRATAMY 491
Query: 242 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEV 301
FIDKLALRAGNEK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIRYYN+V
Sbjct: 492 FIDKLALRAGNEKGEDEADTVGCCSLRCEHVTLE-----APNSVIFDFLGKDSIRYYNKV 546
Query: 302 PVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
PVE +VFKN+++F ENK D LFDR+NTS LNKHL+ M+GLTAKVFRT+NAS T Q+
Sbjct: 547 PVEPQVFKNIRIFKENKNDDDSLFDRVNTSSLNKHLNNEMKGLTAKVFRTFNASSTFQRL 606
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVK 419
L+E D + EK+ AYN+ANR VA+LCNHQR+ PK+HD+SM E++ NK + +K
Sbjct: 607 LDEHKFTDATLQEKLNAYNKANREVAILCNHQRTAPKTHDQSM----ERMRNKYRALK 660
>gi|302680196|ref|XP_003029780.1| hypothetical protein SCHCODRAFT_58495 [Schizophyllum commune H4-8]
gi|300103470|gb|EFI94877.1| hypothetical protein SCHCODRAFT_58495 [Schizophyllum commune H4-8]
Length = 810
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/417 (54%), Positives = 294/417 (70%), Gaps = 9/417 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEK---ERAVITD 57
M+ GK + LS +AEE+A FYA ++E ++ FN NF DW++ + + + IT
Sbjct: 209 MKYNGKPVNLSVEAEEVAGFYAALLESDHAQDATFNKNFFHDWKEVLKKHPPLDGTQITS 268
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
L CDFR M YF + ++KAM++ EKK++K + E +Y C +DG KE++GNFR+E
Sbjct: 269 LEACDFRPMFEYFEAEKAKKKAMTQAEKKELKAQREEAEAKYKFCLLDGRKEQVGNFRVE 328
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRG+HP+ G LK RV+ EDII+N KD+ VP P +WK ++HD VTWLA+W
Sbjct: 329 PPGLFRGRGDHPRKGALKHRVRPEDIILNIGKDAPVPVPNMPGQWKGIQHDQTVTWLATW 388
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
TENV KY+ L S LKG+ D QK+E AR+L +++IR NY+ D KSK M RQRA
Sbjct: 389 TENVNQNHKYVFLAAGSSLKGQSDMQKFEKARELKNHVDRIRSNYENDLKSKVMAERQRA 448
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
A+YFIDKLALRAGNEK ED+ADTVGCCSLR EH+ L E D Y + FDFLGKDSIRY
Sbjct: 449 TAMYFIDKLALRAGNEKGEDEADTVGCCSLRCEHVTL--ENDKGEYYITFDFLGKDSIRY 506
Query: 298 YNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
YN V V++++FKN+++F ENK D LFDR+NTS LNKHL+ M+GLTAKVFRTYNASIT
Sbjct: 507 YNRVQVDQQIFKNVRIFKENKNDDDSLFDRVNTSSLNKHLTTEMKGLTAKVFRTYNASIT 566
Query: 358 LQQQLNELMDPDFSEA---EKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
Q+ L+E P A EK+ AYN ANR VAVLCNHQRSVPK+ ++SM ++ K+
Sbjct: 567 FQRLLDE-SGPSLKNATLQEKLNAYNDANRMVAVLCNHQRSVPKTFEQSMEKMRRKV 622
>gi|380699305|gb|AFD94945.1| topoisomerase I, partial [Stenamma felixi]
Length = 293
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 221/279 (79%), Positives = 255/279 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
+EMKLS++ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 SEEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH +FV+KSEERKAM+KEEK+KIK++NE I KE G C++DGHKEKI NF+IEPPGLFRG
Sbjct: 75 EMHEHFVRKSEERKAMTKEEKQKIKEKNEEIQKECGFCSLDGHKEKIDNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDEDQADTVGCCSLRVEHI+LHE++DG+ Y
Sbjct: 255 KLALRAGNEKDEDQADTVGCCSLRVEHIKLHEQRDGRQY 293
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/149 (71%), Positives = 123/149 (82%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEKDEDQADTVGCCSLRVEHI+LHE++D
Sbjct: 261 GNEKDEDQADTVGCCSLRVEHIKLHEQRD 289
>gi|302794059|ref|XP_002978794.1| hypothetical protein SELMODRAFT_152781 [Selaginella moellendorffii]
gi|300153603|gb|EFJ20241.1| hypothetical protein SELMODRAFT_152781 [Selaginella moellendorffii]
Length = 533
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 248/498 (49%), Positives = 329/498 (66%), Gaps = 21/498 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M G+ + L+ EE+AT YA M + +Y T+ FN+NF +DW+K + VI L
Sbjct: 13 MLYNGEPVDLTPAQEEVATMYAVMKDTDYATQAKFNSNFWQDWKKILGSNH--VIKKLEL 70
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF ++ ++ + E++K +S EKK+++DE ++Y +DG KEK+GNFR+EPPG
Sbjct: 71 CDFTPIYDWYQSEKEKKKQLSSAEKKQLRDEKAKAEEKYTWALVDGVKEKVGNFRVEPPG 130
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTE 179
LFRGRG+HPKMGKLKRR+ E+I+IN K + VP P PGH WKE+RHDN VTWLA W +
Sbjct: 131 LFRGRGQHPKMGKLKRRIFPENIVINIGKGAPVPECPMPGHNWKEIRHDNTVTWLAFWND 190
Query: 180 NV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + + KY+ L+PSS LK + D +KYE AR+L I+KIR+ Y D+ S + RQ AV
Sbjct: 191 PINEKEFKYVFLHPSSSLKAQSDMKKYEKARQLKDYIDKIRKTYTKDFGSTDPTKRQIAV 250
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y ID+LALRAGNEKD+D+ADTVGCCSL+VEH++L + K + FDFLGKDSIRY
Sbjct: 251 ATYLIDRLALRAGNEKDDDEADTVGCCSLKVEHVKLLDSKK-----IEFDFLGKDSIRYL 305
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
NEV VE++VFK + F + KK DDLFDRL+T+ LN HL E M LTAKVFRTYNASITL
Sbjct: 306 NEVAVEEKVFKAIGDFQKGKKSGDDLFDRLDTNKLNAHLKEFMPELTAKVFRTYNASITL 365
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN----K 414
QL E D EKI Y RAN+ VAVLCNHQR+V KSH M L+ K++ +
Sbjct: 366 DNQL-EHTDGSIV-PEKIGDYQRANKEVAVLCNHQRTVSKSHGAQMEKLEGKMAELKALR 423
Query: 415 RKQVKDAERALKDAKKAGESKAMTDKKKTA------LGRLKEQLLKLEVQETDKEENKTI 468
+ V D ERA K + T + ++ L + ++ K+E+ K++ KT+
Sbjct: 424 EEIVIDLERARKGKPPRKDEDGKTKRNQSPEQLEKKLEQTDNKIQKMELDMKVKDDLKTV 483
Query: 469 ALGTSKLNYLDPRISVTW 486
ALGTSK+NYLDPRI+V W
Sbjct: 484 ALGTSKINYLDPRITVAW 501
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 95/138 (68%), Gaps = 5/138 (3%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + + KY+ L+PSS LK + D +KYE AR+L I+KIR+ Y D+ S
Sbjct: 181 TVTWLAFWNDPINEKEFKYVFLHPSSSLKAQSDMKKYEKARQLKDYIDKIRKTYTKDFGS 240
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKI-YNKT 600
+ RQ AVA Y ID+LALRAGNEKD+D+ADTVGCCSL+VEH++L D KKI ++
Sbjct: 241 TDPTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCSLKVEHVKLL---DSKKIEFDFL 297
Query: 601 QRAKFRWAIDMATADFVF 618
+ R+ ++A + VF
Sbjct: 298 GKDSIRYLNEVAVEEKVF 315
>gi|390602536|gb|EIN11929.1| hypothetical protein PUNSTDRAFT_62929 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 780
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/413 (53%), Positives = 290/413 (70%), Gaps = 8/413 (1%)
Query: 2 EAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEK---ERAVITDL 58
E G + L ++EE+A FYA +IE ++ FN NF +DW+ + E + ITD+
Sbjct: 184 EPPGNVVNLPPESEEVAQFYAALIESDHAQDAVFNKNFFRDWKAVLKEHPPLDGTNITDM 243
Query: 59 SKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEP 118
CDFR ++ Y ++ ++KA++ +KK++K E + + + Y C ++G KEKIGNFRIEP
Sbjct: 244 KLCDFRPIYEYLEEERAKKKALTSAQKKELKAEKDKLEEPYAYCKLNGRKEKIGNFRIEP 303
Query: 119 PGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWT 178
PGLFRGRGEHPK G LK RV+ EDI IN + +P P KWK V HD VTWLA+W
Sbjct: 304 PGLFRGRGEHPKKGSLKHRVRPEDITINIGEGVPIPVPNMPGKWKNVIHDQTVTWLANWQ 363
Query: 179 ENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
EN+ Q KY+ L +S LKG+ D K+E AR+L K + +IR++Y AD K+K M RQRA
Sbjct: 364 ENINNQNKYVFLAANSSLKGQSDMAKFEKARELKKHVERIRQDYTADLKTKVMADRQRAT 423
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A+YFID+LALRAGNEK ED+ADTVGCCSLR EH+ L P + FDFLGKDSIRYY
Sbjct: 424 AMYFIDRLALRAGNEKGEDEADTVGCCSLRCEHVTLE-----APNFIIFDFLGKDSIRYY 478
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
N V V+++VFKN+++F ++K+ D+LFDR+ T+ LNKHL M+GLTAKVFRTYNASIT
Sbjct: 479 NRVAVDEQVFKNIRIFKKDKEDDDNLFDRVATTTLNKHLQSYMKGLTAKVFRTYNASITF 538
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
QQQL+E + EK+ AYN ANR VA+LCNHQR+VPK+HD+SM +++KI
Sbjct: 539 QQQLDEGTPETATTQEKLNAYNHANRMVAILCNHQRAVPKTHDQSMAKMRDKI 591
>gi|449546699|gb|EMD37668.1| hypothetical protein CERSUDRAFT_114313 [Ceriporiopsis subvermispora
B]
Length = 895
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/414 (53%), Positives = 295/414 (71%), Gaps = 8/414 (1%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSM---TEKERAVITD 57
M+ GK + L ++EE+A FYA ++E ++ + FN NF DW+K + ++ IT+
Sbjct: 298 MKYNGKFVNLPPESEEVAGFYAALLETDHARDKTFNKNFFDDWQKVLKKNPPRDGTKITN 357
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
CDFR M+ YF + ++KA++ EKK++K + +A+ Y C +DG KEK+GNFR+E
Sbjct: 358 FELCDFRPMYDYFETEKAKKKALTTAEKKELKAKKDALEAPYTHCFLDGRKEKVGNFRVE 417
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRG+HPK G LK RV+ EDIIIN P P KWK+V HDN VTWLA+W
Sbjct: 418 PPGLFRGRGDHPKKGALKYRVRPEDIIINIGDGVPTPKPNMPGKWKDVIHDNTVTWLANW 477
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
TENV G KY+ L S +KG+ D QK+E AR+L +++IR +Y D K+K M+ RQRA
Sbjct: 478 TENVNGNHKYVFLAAGSSIKGQSDMQKFEKARELKNHVDRIRADYSRDLKAKVMQDRQRA 537
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
A+YFID+LALRAGNEK ED+ADTVGCCSLR EHI L P + FDFLGKDSIRY
Sbjct: 538 TAMYFIDRLALRAGNEKGEDEADTVGCCSLRCEHITLQ-----PPDKLIFDFLGKDSIRY 592
Query: 298 YNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
YN+V V+++VFKN+++F +NK+ DDLFDR+ T+ LNKHL M+GLTAKVFRTYNASIT
Sbjct: 593 YNQVDVDEQVFKNIRIFKDNKEDEDDLFDRVGTASLNKHLQSYMKGLTAKVFRTYNASIT 652
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
QQQL++ + EK+ AYN ANR VA+LCNHQR+VPK+H++SMG ++EK+
Sbjct: 653 FQQQLDQGTPEKGTVQEKLNAYNHANRMVAILCNHQRAVPKTHEQSMGKMREKL 706
>gi|330842997|ref|XP_003293452.1| hypothetical protein DICPUDRAFT_50979 [Dictyostelium purpureum]
gi|325076220|gb|EGC30025.1| hypothetical protein DICPUDRAFT_50979 [Dictyostelium purpureum]
Length = 757
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 245/533 (45%), Positives = 328/533 (61%), Gaps = 52/533 (9%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KL+ + EE+ATFYA +E ++ KEAF NF ++R +T +++ I +L+KCDF
Sbjct: 203 GKVVKLTPEQEEVATFYANYLETDHVKKEAFRDNFFAEFRGLLTTEQKKTIKNLAKCDFS 262
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+H + ++ E RK+ SK EK E + + ++YG IDG KEKIGNF IEPPGLF G
Sbjct: 263 HIHTFLQERKETRKSRSKNEKDAEAAEKKKLQEKYGFAMIDGFKEKIGNFTIEPPGLFLG 322
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQG 183
RG HPK G LK+R+ D+ IN K VPP P PGH+WK+V HDN VTWLA W E++ G
Sbjct: 323 RGAHPKTGMLKQRIYPSDVTINIGKGENVPPSPIPGHEWKDVVHDNTVTWLAFWKESING 382
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
KYI L PSSK+KG+ D +K+E ARKL I IR+ Y + + RQ VALY I
Sbjct: 383 GTKYIWLAPSSKIKGQADRKKFEVARKLKDCIESIRKGYIKSFTNDSEEKRQLGVALYLI 442
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D LALR GNEK EDQADTVGCCSLRVEHI+L GK + DFLGKDS+RY+N V +
Sbjct: 443 DFLALRVGNEKGEDQADTVGCCSLRVEHIKL-----GKDNTITLDFLGKDSMRYFNTVKI 497
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
+K LQ V+ KK S+ LFD L+ + LN HL + M+GL+AKVFRTYNASITLQ++LN
Sbjct: 498 RPDAYKVLQECVKGKKPSELLFDDLSVAQLNTHLKKQMDGLSAKVFRTYNASITLQKELN 557
Query: 364 ELMDPDFSEAE-KILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
++ + ++S E KIL YNR NR VA+LCNHQ++ PK+ +++G + +KI +
Sbjct: 558 KMDESEYSTIEEKILYYNRCNREVAILCNHQKAPPKNLSETLGKIDDKILEYNDLIDLCR 617
Query: 423 RALKDAKKAGESKAMTDKKKTALGRLKE-------------------------------- 450
LK K + + +++K L +L E
Sbjct: 618 IKLKLKPKTSDKDDIEEREKERLKKLIEANIAKKEENKTDKEVSFDTKATFERSRNIPDG 677
Query: 451 -------------QLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
Q+ KLE+Q+T K+E KT+ALGTSK+NYLDPRI+V++ W
Sbjct: 678 EQKINDKIDKYEKQIKKLEIQKTTKDELKTVALGTSKINYLDPRITVSFCKKW 730
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 74/105 (70%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W E++ G KYI L PSSK+KG+ D +K+E ARKL I IR+ Y + +
Sbjct: 369 TVTWLAFWKESINGGTKYIWLAPSSKIKGQADRKKFEVARKLKDCIESIRKGYIKSFTND 428
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ VALY ID LALR GNEK EDQADTVGCCSLRVEHI+L
Sbjct: 429 SEEKRQLGVALYLIDFLALRVGNEKGEDQADTVGCCSLRVEHIKL 473
>gi|256355115|ref|NP_001157806.1| topoisomerase I [Zea mays]
gi|240065169|gb|ACS44671.1| DNA topoisomerase I [Zea mays]
Length = 904
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/498 (48%), Positives = 327/498 (65%), Gaps = 20/498 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M GK + L+ + EE+AT +A M + +Y K F NF DWRK + + +I +
Sbjct: 383 MLYNGKPVDLTPEQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNH--IIKNFEL 440
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF ++ + +++ E +K M+ EEKK ++++N ++Y +DG KEK+GNFR+EPPG
Sbjct: 441 CDFTPIYEWHLREKERKKQMTTEEKKTLREDNLKQEEKYMWAVVDGVKEKVGNFRVEPPG 500
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTE 179
LFRGRGEHPKMGKLKRR+ DI IN K + VP P PG WKEV+HDN VTWLA W +
Sbjct: 501 LFRGRGEHPKMGKLKRRILPSDITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWND 560
Query: 180 NVQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + KY+ L SS LKG+ D +KYE +RKL I +IRENY D+K+K++ RQ AV
Sbjct: 561 PINPKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAV 620
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y IDKLALRAGNEKD+D+ADTVGCC+L+V+++ P + FDFLGKDSIRY+
Sbjct: 621 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNVTCMP-----PNQIQFDFLGKDSIRYF 675
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
N V VE+ V+K ++ F KK DLFD+++TS LN HL +LM GLTAKVFRTYNASITL
Sbjct: 676 NTVEVEELVYKAIEGFRAGKKPGQDLFDKIDTSRLNAHLKDLMPGLTAKVFRTYNASITL 735
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
L+E + D + EKI Y RAN+ VA++CN QRSV KSH+ M + EKI + Q+
Sbjct: 736 DGILHEETE-DGTVLEKIAVYQRANKEVAIICNQQRSVSKSHESQMTRMNEKIDELKSQM 794
Query: 419 KDAERALKDAKKA------GESKAMTDKKKTAL----GRLKEQLLKLEVQETDKEENKTI 468
++ + L AKK E K + A+ L+ ++ K+E+ + KE+ KT+
Sbjct: 795 EELKADLNKAKKGKPLGYDSEGKPKRNLAPEAIQKKVATLEGKIEKMEMDKRIKEDLKTV 854
Query: 469 ALGTSKLNYLDPRISVTW 486
ALGTSK+NYLDPRI+V W
Sbjct: 855 ALGTSKINYLDPRITVAW 872
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 483 SVTWLASWTENVQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L SS LKG+ D +KYE +RKL I +IRENY D+K+
Sbjct: 551 TVTWLAFWNDPINPKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKN 610
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
K++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V+++
Sbjct: 611 KDVTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNV 654
>gi|242078207|ref|XP_002443872.1| hypothetical protein SORBIDRAFT_07g003610 [Sorghum bicolor]
gi|241940222|gb|EES13367.1| hypothetical protein SORBIDRAFT_07g003610 [Sorghum bicolor]
Length = 921
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 241/494 (48%), Positives = 328/494 (66%), Gaps = 20/494 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ + L+ + EE+AT +A M + +Y K F NF DWRK + + +I CDF
Sbjct: 404 GQPVDLTPEQEEVATMFAVMKDTDYAGKPTFIDNFFTDWRKILGKNH--IIKKFELCDFT 461
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + +++ E++K M+ EEKK +++E ++Y +DG KEK+GNFR+EPPGLFRG
Sbjct: 462 PIYEWHLREKEKKKQMTTEEKKALREEKLKQEEKYMWAVVDGVKEKVGNFRVEPPGLFRG 521
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENV-Q 182
RGEHPKMGKLKRR+Q DI IN K + VP P PG WKE++HDN VTWLA W + + Q
Sbjct: 522 RGEHPKMGKLKRRIQPSDITINIGKGAPVPECPIPGESWKEIKHDNTVTWLAFWNDPISQ 581
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
KY+ L SS LKG+ D +KYE +RKL I +IRENY D+K+K++ RQ AVA Y
Sbjct: 582 KDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYL 641
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+V+++ P + FDFLGKDSIRY+N V
Sbjct: 642 IDKLALRAGNEKDDDEADTVGCCTLKVDNVTCMP-----PNKIQFDFLGKDSIRYFNTVE 696
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE+ V+K ++ F KK + LFD+++T+ LN HL +LM GLTAKVFRTYNASITL L
Sbjct: 697 VEELVYKAIEGFRAGKKPGEGLFDKIDTTRLNAHLKDLMPGLTAKVFRTYNASITLDGIL 756
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
+E + D + EKI Y RAN+ VA++CNHQRSV KSH+ M L EKI + Q+++ +
Sbjct: 757 HEETE-DGTLLEKIAVYQRANKEVAIICNHQRSVSKSHESQMIKLNEKIDELKSQMEELK 815
Query: 423 RALKDAKKA---GESKAMTDKKKTA-------LGRLKEQLLKLEVQETDKEENKTIALGT 472
L AKK G K K+ A + ++ ++ K+E+ + KE+ KT+ALGT
Sbjct: 816 ADLSKAKKGKPLGYDKEGKQKRNLAPEAIEKKIAMVEGKIDKMEMDKKIKEDLKTVALGT 875
Query: 473 SKLNYLDPRISVTW 486
SK+NYLDPRI+V W
Sbjct: 876 SKINYLDPRITVAW 889
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + Q KY+ L SS LKG+ D +KYE +RKL I +IRENY D+K+
Sbjct: 568 TVTWLAFWNDPISQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKN 627
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
K++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V+++
Sbjct: 628 KDVTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNV 671
>gi|403411987|emb|CCL98687.1| predicted protein [Fibroporia radiculosa]
Length = 893
Score = 457 bits (1175), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/414 (52%), Positives = 288/414 (69%), Gaps = 8/414 (1%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSM---TEKERAVITD 57
M GK + L +EE+A FYA ++E ++ + FN NF DW+ + ++ I +
Sbjct: 296 MRYDGKPVNLPPASEEVAGFYAALLESDHAKDKTFNKNFFDDWKNILQKHPPRDGTKIVE 355
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
+CDFR M YF + ++KAM+ EKK+ K +A+ Y C +DG KEK+GNFR+E
Sbjct: 356 FLRCDFRPMFEYFEAEKAKKKAMTSAEKKEAKVAKDALEAPYTHCVLDGRKEKVGNFRVE 415
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRG+HPK G LK RV+ EDI IN + P P KWK+V HDN VTWLA+W
Sbjct: 416 PPGLFRGRGDHPKKGALKLRVRPEDITINIGEGIPTPKPNVPGKWKDVMHDNTVTWLATW 475
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
TENV G KY+ L S +KG+ D QK+E AR+L +++IR++Y AD KSK M RQRA
Sbjct: 476 TENVNGNHKYVFLAAGSSIKGQSDMQKFEKARELKNHVDRIRKDYTADLKSKLMADRQRA 535
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
A+YFID+LALRAGNEK ED+ADTVGCCSLR EH+ L P + FDFLGKDSIRY
Sbjct: 536 TAMYFIDRLALRAGNEKGEDEADTVGCCSLRCEHVTLQ-----PPNQLVFDFLGKDSIRY 590
Query: 298 YNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
YN+V V+ +V+KN+++ + K D+LFDR++TS LNKHL+ M+GLTAKVFRTYNASIT
Sbjct: 591 YNQVTVDDQVYKNIRICKDGKNDDDNLFDRVSTSSLNKHLASYMKGLTAKVFRTYNASIT 650
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
Q+QL++ + EK+ AYN ANR VA+LCNHQR+VPK+H++SMG ++EK+
Sbjct: 651 FQEQLDQGTPEKGTVQEKLNAYNHANRMVAILCNHQRAVPKTHEQSMGKMREKL 704
>gi|413921287|gb|AFW61219.1| DNA topoisomerase I [Zea mays]
Length = 602
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 242/498 (48%), Positives = 327/498 (65%), Gaps = 20/498 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M GK + L+ + EE+AT +A M + +Y K F NF DWRK + + +I +
Sbjct: 81 MLYNGKPIDLTPEQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNH--IIKNFEL 138
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF ++ + +++ E +K M+ EEKK ++++ ++Y +DG KEK+GNFR+EPPG
Sbjct: 139 CDFTPIYEWHLREKERKKQMTTEEKKTLREDKLKQEEKYMWAVVDGVKEKVGNFRVEPPG 198
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTE 179
LFRGRGEHPKMGKLKRR+ DI IN K + VP P PG WKEV+HDN VTWLA W +
Sbjct: 199 LFRGRGEHPKMGKLKRRILPSDITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWND 258
Query: 180 NVQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + KY+ L SS LKG+ D +KYE +RKL I +IRENY D+K+K++ RQ AV
Sbjct: 259 PINPKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAV 318
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y IDKLALRAGNEKD+D+ADTVGCC+L+V+++ P + FDFLGKDSIRY+
Sbjct: 319 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNVTCMP-----PNQIQFDFLGKDSIRYF 373
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
N V VE+ V+K ++ F KK DLFD+++TS LN HL +LM GLTAKVFRTYNASITL
Sbjct: 374 NTVEVEELVYKAIEGFRAGKKPGQDLFDKIDTSRLNAHLKDLMPGLTAKVFRTYNASITL 433
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
L+E + D + EKI Y RAN+ VA++CNHQRSV KSH+ M + EKI + Q+
Sbjct: 434 DGILHEETE-DGTVLEKIAVYQRANKEVAIICNHQRSVSKSHESQMTRMNEKIDELKSQM 492
Query: 419 KDAERALKDAKKA---GESKAMTDKKKTA-------LGRLKEQLLKLEVQETDKEENKTI 468
++ + L AKK G K+ A + L+ ++ K+E+ + KE+ KT+
Sbjct: 493 EELKADLNKAKKGKPLGYDSEGKPKRNLAPEAIQKKVATLEGKIEKMEMDKRIKEDLKTV 552
Query: 469 ALGTSKLNYLDPRISVTW 486
ALGTSK+NYLDPRI+V W
Sbjct: 553 ALGTSKINYLDPRITVAW 570
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 483 SVTWLASWTENVQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L SS LKG+ D +KYE +RKL I +IRENY D+K+
Sbjct: 249 TVTWLAFWNDPINPKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKN 308
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
K++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V+++
Sbjct: 309 KDVTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNV 352
>gi|302794067|ref|XP_002978798.1| hypothetical protein SELMODRAFT_109207 [Selaginella moellendorffii]
gi|300153607|gb|EFJ20245.1| hypothetical protein SELMODRAFT_109207 [Selaginella moellendorffii]
Length = 597
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 248/499 (49%), Positives = 329/499 (65%), Gaps = 22/499 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M G+ + L+ EE+AT YA M + +Y T+ FN+NF +DW+K + VI L
Sbjct: 82 MLYNGEPVDLTPAQEEVATMYAVMKDTDYATQAKFNSNFWQDWKKILGSNH--VIKKLEL 139
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF ++ ++ + E++K +S EKK+++DE ++Y +DG KEK+GNFR+EPPG
Sbjct: 140 CDFTPIYDWYQSEKEKKKQLSSAEKKQLRDEKAKAEEKYTWALVDGVKEKVGNFRVEPPG 199
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTE 179
LFRGRG+HPKMGKLKRR+ E+I+IN K + VP P PGH WKE+RHDN VTWLA W +
Sbjct: 200 LFRGRGQHPKMGKLKRRIFPENIVINIGKGAPVPECPMPGHNWKEIRHDNTVTWLAFWND 259
Query: 180 NV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + + KY+ L+PSS LK + D +KYE AR+L I+KIR+ Y D+ S + RQ AV
Sbjct: 260 PINEKEFKYVFLHPSSSLKAQSDMKKYEKARQLKDYIDKIRKTYTKDFGSTDPTKRQIAV 319
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y ID+LALRAGNEKD+D+ADTVGCCSL+VEH++L + K + FDFLGKDSIRY
Sbjct: 320 ATYLIDRLALRAGNEKDDDEADTVGCCSLKVEHVKLLDSKK-----IEFDFLGKDSIRYL 374
Query: 299 NEVPVEKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
NEV VE++VFK + F + KK DDLFDRL+T+ LN HL E M LTAKVFRTYNASIT
Sbjct: 375 NEVAVEEKVFKAIGDFQKGRKKSGDDLFDRLDTNKLNAHLKEFMPELTAKVFRTYNASIT 434
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN---- 413
L QL E D EKI Y RAN+ VAVLCNHQR+V KSH M L+ K++
Sbjct: 435 LDNQL-EHTDGSIV-PEKIGDYQRANKEVAVLCNHQRTVSKSHGAQMEKLEGKMAELKAL 492
Query: 414 KRKQVKDAERALKDAKKAGESKAMTDKKKTA------LGRLKEQLLKLEVQETDKEENKT 467
+ + V D ERA K + T + ++ L + ++ K+E+ K++ KT
Sbjct: 493 REEIVIDLERARKGKPPRKDEDGKTKRNQSPEQLEKKLEQTDNKIQKMELDMKVKDDLKT 552
Query: 468 IALGTSKLNYLDPRISVTW 486
+ALGTSK+NYLDPRI+V W
Sbjct: 553 VALGTSKINYLDPRITVAW 571
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 95/138 (68%), Gaps = 5/138 (3%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + + KY+ L+PSS LK + D +KYE AR+L I+KIR+ Y D+ S
Sbjct: 250 TVTWLAFWNDPINEKEFKYVFLHPSSSLKAQSDMKKYEKARQLKDYIDKIRKTYTKDFGS 309
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKI-YNKT 600
+ RQ AVA Y ID+LALRAGNEKD+D+ADTVGCCSL+VEH++L D KKI ++
Sbjct: 310 TDPTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCSLKVEHVKLL---DSKKIEFDFL 366
Query: 601 QRAKFRWAIDMATADFVF 618
+ R+ ++A + VF
Sbjct: 367 GKDSIRYLNEVAVEEKVF 384
>gi|302805913|ref|XP_002984707.1| hypothetical protein SELMODRAFT_156783 [Selaginella moellendorffii]
gi|300147689|gb|EFJ14352.1| hypothetical protein SELMODRAFT_156783 [Selaginella moellendorffii]
Length = 579
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 248/499 (49%), Positives = 329/499 (65%), Gaps = 22/499 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M G+ + L+ EE+AT YA M + +Y T+ FN+NF +DW+K + VI L
Sbjct: 58 MLYNGEPVDLTPAQEEVATMYAVMKDTDYATQAKFNSNFWQDWKKILGSNH--VIKKLEL 115
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF ++ ++ + E++K +S EKK+++DE ++Y +DG KEK+GNFR+EPPG
Sbjct: 116 CDFTPIYDWYQSEKEKKKQLSSAEKKQLRDEKAKAEEKYTWALVDGVKEKVGNFRVEPPG 175
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTE 179
LFRGRG+HPKMGKLKRR+ E+I+IN K + VP P PGH WKE+RHDN VTWLA W +
Sbjct: 176 LFRGRGQHPKMGKLKRRIFPENIVINIGKGAPVPECPMPGHNWKEIRHDNTVTWLAFWND 235
Query: 180 NV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + + KY+ L+PSS LK + D +KYE AR+L I+KIR+ Y D+ S + RQ AV
Sbjct: 236 PINEKEFKYVFLHPSSSLKAQSDMKKYEKARQLKDYIDKIRKTYTKDFGSTDPTKRQIAV 295
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y ID+LALRAGNEKD+D+ADTVGCCSL+VEH++L + K + FDFLGKDSIRY
Sbjct: 296 ATYLIDRLALRAGNEKDDDEADTVGCCSLKVEHVKLLDSKK-----IEFDFLGKDSIRYL 350
Query: 299 NEVPVEKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
NEV VE++VFK + F + KK DDLFDRL+T+ LN HL E M LTAKVFRTYNASIT
Sbjct: 351 NEVAVEEKVFKAIGDFQKGRKKSGDDLFDRLDTNKLNAHLKEFMPELTAKVFRTYNASIT 410
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN---- 413
L QL E D EKI Y RAN+ VAVLCNHQR+V KSH M L+ K++
Sbjct: 411 LDNQL-EHTDGSIV-PEKIGDYQRANKEVAVLCNHQRTVSKSHGAQMEKLEGKMAELKAL 468
Query: 414 KRKQVKDAERALKDAKKAGESKAMTDKKKTA------LGRLKEQLLKLEVQETDKEENKT 467
+ + V D ERA K + T + ++ L + ++ K+E+ K++ KT
Sbjct: 469 REEIVIDLERARKGKPPRKDEDGKTKRNQSPEQLEKKLEQTDNKIQKMELDMKVKDDLKT 528
Query: 468 IALGTSKLNYLDPRISVTW 486
+ALGTSK+NYLDPRI+V W
Sbjct: 529 VALGTSKINYLDPRITVAW 547
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 95/138 (68%), Gaps = 5/138 (3%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + + KY+ L+PSS LK + D +KYE AR+L I+KIR+ Y D+ S
Sbjct: 226 TVTWLAFWNDPINEKEFKYVFLHPSSSLKAQSDMKKYEKARQLKDYIDKIRKTYTKDFGS 285
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKI-YNKT 600
+ RQ AVA Y ID+LALRAGNEKD+D+ADTVGCCSL+VEH++L D KKI ++
Sbjct: 286 TDPTKRQIAVATYLIDRLALRAGNEKDDDEADTVGCCSLKVEHVKLL---DSKKIEFDFL 342
Query: 601 QRAKFRWAIDMATADFVF 618
+ R+ ++A + VF
Sbjct: 343 GKDSIRYLNEVAVEEKVF 360
>gi|66811030|ref|XP_639222.1| DNA topoisomerase I [Dictyostelium discoideum AX4]
gi|74854702|sp|Q54RC3.1|TOP1_DICDI RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|60467826|gb|EAL65841.1| DNA topoisomerase I [Dictyostelium discoideum AX4]
Length = 893
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 245/531 (46%), Positives = 329/531 (61%), Gaps = 54/531 (10%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KL+ EE+ATFYA +E ++ K+AF NF K+++ +T +++ ++ + KCDF
Sbjct: 337 GKVVKLTPKQEEVATFYANYLETDHVKKQAFKDNFFKEFKGLLTSEQKEIVKKMDKCDFS 396
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+H + K E+RKA SKEEK E + I +++G TIDG KEK+GN+ IEPPGLF G
Sbjct: 397 HIHTHLKTKKEQRKARSKEEKDAETAEKKKIQEKHGFATIDGFKEKVGNYMIEPPGLFLG 456
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQG 183
RG+HPK G LK+R+ D+ +N + +PP P PG KWKE+ H+N VTWLA W E+V G
Sbjct: 457 RGQHPKTGMLKQRIMPSDVTLNIGEGEVIPPSPIPGEKWKEIVHNNTVTWLAFWRESVNG 516
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
KY+ L PSSK+KG+ D +K+E AR L I IR+ YQ + + RQ AVALY I
Sbjct: 517 GFKYVWLAPSSKIKGQADRKKFEVARGLKNCIGDIRKGYQKSFNDESTEKRQLAVALYLI 576
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D LALR GNEK EDQADTVGCCSLRVEHI+L + DFLGKDS+RY N V +
Sbjct: 577 DFLALRVGNEKGEDQADTVGCCSLRVEHIKLESNN-----TITLDFLGKDSMRYLNTVQI 631
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
+ +K L+ FV+ KK +D LFD L + LN HL + M GL+AKVFRTYNASITLQ++L+
Sbjct: 632 REDAYKVLKTFVKGKKPTDLLFDSLTVTQLNNHLKKQMTGLSAKVFRTYNASITLQKELD 691
Query: 364 ELMDPDF-SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRK------ 416
++ +F S EKIL YNR NR VA+LCNHQ++ PK+ ++M + EKI R
Sbjct: 692 KMDTKEFQSIDEKILFYNRCNREVAILCNHQKAPPKNLAETMSKIDEKIQELRDLQDLCR 751
Query: 417 --------------QVKDAERALK-----------------------DAKKAGE-SKAMT 438
+ ++AER K D K A E S+ +
Sbjct: 752 IKIGKTPKSQQEDIESREAERLPKLIQLAITNKKDKDKEKTDKEISFDVKAAFEKSRTLP 811
Query: 439 DKK---KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
D K K + + +EQ+ K E+ +T K+E KT+ALGTSK+NYLDPRI+V W
Sbjct: 812 DAKGKIKEKIAKYEEQIKKQEILKTGKDELKTVALGTSKINYLDPRITVAW 862
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 75/105 (71%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W E+V G KY+ L PSSK+KG+ D +K+E AR L I IR+ YQ + +
Sbjct: 503 TVTWLAFWRESVNGGFKYVWLAPSSKIKGQADRKKFEVARGLKNCIGDIRKGYQKSFNDE 562
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ AVALY ID LALR GNEK EDQADTVGCCSLRVEHI+L
Sbjct: 563 STEKRQLAVALYLIDFLALRVGNEKGEDQADTVGCCSLRVEHIKL 607
>gi|219884043|gb|ACL52396.1| unknown [Zea mays]
Length = 574
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 242/498 (48%), Positives = 327/498 (65%), Gaps = 20/498 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M GK + L+ + EE+AT +A M + +Y K F NF DWRK + + +I +
Sbjct: 53 MLYNGKPIDLTPEQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNH--IIKNFEL 110
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF ++ + +++ E +K M+ EEKK ++++ ++Y +DG KEK+GNFR+EPPG
Sbjct: 111 CDFTPIYEWHLREKERKKQMTTEEKKTLREDKLKQEEKYMWAVVDGVKEKVGNFRVEPPG 170
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTE 179
LFRGRGEHPKMGKLKRR+ DI IN K + VP P PG WKEV+HDN VTWLA W +
Sbjct: 171 LFRGRGEHPKMGKLKRRILPSDITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWND 230
Query: 180 NVQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + KY+ L SS LKG+ D +KYE +RKL I +IRENY D+K+K++ RQ AV
Sbjct: 231 PINPKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAV 290
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y IDKLALRAGNEKD+D+ADTVGCC+L+V+++ P + FDFLGKDSIRY+
Sbjct: 291 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNVTCMP-----PNQIQFDFLGKDSIRYF 345
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
N V VE+ V+K ++ F KK DLFD+++TS LN HL +LM GLTAKVFRTYNASITL
Sbjct: 346 NTVEVEELVYKAIEGFRAGKKPGQDLFDKIDTSRLNAHLKDLMPGLTAKVFRTYNASITL 405
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
L+E + D + EKI Y RAN+ VA++CNHQRSV KSH+ M + EKI + Q+
Sbjct: 406 DGILHEETE-DGTVLEKIAVYQRANKEVAIICNHQRSVSKSHESQMTRMNEKIDELKSQM 464
Query: 419 KDAERALKDAKKA---GESKAMTDKKKTA-------LGRLKEQLLKLEVQETDKEENKTI 468
++ + L AKK G K+ A + L+ ++ K+E+ + KE+ KT+
Sbjct: 465 EELKADLNKAKKGKPLGYDSEGKPKRNLAPEAIQKKVATLEGKIEKMEMDKRIKEDLKTV 524
Query: 469 ALGTSKLNYLDPRISVTW 486
ALGTSK+NYLDPRI+V W
Sbjct: 525 ALGTSKINYLDPRITVAW 542
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 483 SVTWLASWTENVQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L SS LKG+ D +KYE +RKL I +IRENY D+K+
Sbjct: 221 TVTWLAFWNDPINPKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKN 280
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
K++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V+++
Sbjct: 281 KDVTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNV 324
>gi|392569488|gb|EIW62661.1| hypothetical protein TRAVEDRAFT_114324 [Trametes versicolor
FP-101664 SS1]
Length = 799
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 222/414 (53%), Positives = 287/414 (69%), Gaps = 8/414 (1%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSM---TEKERAVITD 57
M+ G+ + L ++EE+A FY +IE + FN NF D+ K + + IT
Sbjct: 202 MKYNGEPVDLPVESEEVAGFYGALIESPHAQDVTFNKNFFDDFLKVLKKYPPRNGIKITK 261
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
CDFR M+ YF + E++K+M+ EKK K + + Y CT+DG KEK+GNFRIE
Sbjct: 262 FELCDFRPMYEYFESEKEKKKSMTTAEKKAAKAAKDELEAPYTHCTLDGRKEKVGNFRIE 321
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRG+HPK G LK R++ EDI IN KDS VP P KWK+V HDN VTWLA+W
Sbjct: 322 PPGLFRGRGDHPKKGALKHRLRPEDITINIGKDSPVPTPNVPGKWKDVVHDNTVTWLANW 381
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
ENV G KY+ L S LKG+ D QK+E AR+L K ++KIR +YQAD K+K+M RQRA
Sbjct: 382 VENVNGNYKYVFLAAGSSLKGQSDMQKFEKARELKKHVDKIRADYQADLKTKQMMERQRA 441
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
A+YFIDKLALRAGNEK +++ADTVGCCSLR EH+ L P + FDFLGKDSIRY
Sbjct: 442 TAMYFIDKLALRAGNEKGDEEADTVGCCSLRCEHVTLL-----PPNKLVFDFLGKDSIRY 496
Query: 298 YNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
YNEV V+ +V+KN+++F NK D+LFDR+NT LNKHL+ M+GLTAKVFRT+NAS+T
Sbjct: 497 YNEVQVDDQVYKNIRIFKGNKNDEDELFDRVNTGALNKHLASYMKGLTAKVFRTFNASLT 556
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
Q+ L+ + EK+ AYN ANR VA+LCNHQR+VPK+H++SM ++EK+
Sbjct: 557 FQELLDRGTPEKGTTQEKLNAYNHANRMVAILCNHQRAVPKTHEQSMTKMREKL 610
>gi|326490327|dbj|BAJ84827.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 946
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 241/498 (48%), Positives = 326/498 (65%), Gaps = 20/498 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M G+ ++L+ D EE+AT +A M + EY TK+ F NF DW+K + + +I
Sbjct: 425 MLYNGQPVELTPDEEEVATMFAVMKDTEYATKKTFIDNFFGDWKKILGKNH--IIKKFEL 482
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF + + +++ E++K M+ EEKK +++E ++Y +DG +EK+GNFR+EPPG
Sbjct: 483 CDFTPIFEWHLREKEKKKQMTSEEKKALREEKLKQEEKYMWAVVDGVREKVGNFRVEPPG 542
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTE 179
LFRGRGEHPKMGKLKRR++ DI IN KD+ VP P G WKEV+HDN VTWLA W +
Sbjct: 543 LFRGRGEHPKMGKLKRRIRPSDITINIGKDTPVPECPIEGESWKEVKHDNTVTWLAFWND 602
Query: 180 NV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ Q KY+ L SS LKG+ D +KYE +RKL I+ IR NY D+KSK++ +Q AV
Sbjct: 603 PISQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKDHIHNIRVNYTKDFKSKDVSKKQIAV 662
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y IDKLALRAGNEKD+D+ADTVGCC+L+V+++ P + FDFLGKDSIRY+
Sbjct: 663 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNVTCVP-----PNKLQFDFLGKDSIRYF 717
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
N V VE V+ ++ F KK D +FD+L+T+ LN HL +LM GLTAKVFRTYNASITL
Sbjct: 718 NTVEVELPVYNAIEEFRTGKKDGDAVFDKLDTTKLNHHLKDLMPGLTAKVFRTYNASITL 777
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
L+E + D + EKI Y RAN+ VA++CNHQR+V KSHD M L EKI + QV
Sbjct: 778 DAILHEETE-DGTLLEKIAVYQRANKEVAIICNHQRAVSKSHDTQMTKLNEKIDELKAQV 836
Query: 419 KDAERAL---KDAKKAGESKAMTDKKKTA-------LGRLKEQLLKLEVQETDKEENKTI 468
+ + L K K G K+ A + +++ ++ K+E+ + KE+ KT+
Sbjct: 837 DELNKDLGKMKRGKPLGNGADGKPKRTLAPEAIEKKISQIETKIEKMEMDKKTKEDLKTV 896
Query: 469 ALGTSKLNYLDPRISVTW 486
ALGTSK+NYLDPRI+V W
Sbjct: 897 ALGTSKINYLDPRITVAW 914
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 78/104 (75%), Gaps = 1/104 (0%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + Q KY+ L SS LKG+ D +KYE +RKL I+ IR NY D+KS
Sbjct: 593 TVTWLAFWNDPISQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKDHIHNIRVNYTKDFKS 652
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
K++ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V+++
Sbjct: 653 KDVSKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNV 696
>gi|328769879|gb|EGF79922.1| hypothetical protein BATDEDRAFT_16830 [Batrachochytrium
dendrobatidis JAM81]
Length = 824
Score = 453 bits (1165), Expect = e-124, Method: Compositional matrix adjust.
Identities = 248/542 (45%), Positives = 325/542 (59%), Gaps = 69/542 (12%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV-ITDLSKCDFRKM 66
+ LS +EE+A+F+A +I ++ + F NF +D+ + E + + + KCDF +
Sbjct: 257 ISLSPASEEVASFFAALIGTDWASNITFQKNFFRDFLGVLKETDPSCPVKTFEKCDFSPI 316
Query: 67 HAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRG 126
Y + E++K MSKEEK K I +YG IDG KEK+GNFR+EPPGLFRGRG
Sbjct: 317 AEYLADQREKKKTMSKEEKAVEKQAKAEIDNQYGWLKIDGRKEKVGNFRVEPPGLFRGRG 376
Query: 127 EHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVK 186
EHP+ G LK RVQ E + IN DS +P PP GHKW + +DN VTWLA W ENV K
Sbjct: 377 EHPRTGSLKLRVQPEQVTINIGADSTIPEPPRGHKWGSIINDNTVTWLAMWKENVNNSFK 436
Query: 187 YIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKL 246
YI L +S LKG+ D++K+E AR L ++ IR Y + K K M RQRA ALYFID+L
Sbjct: 437 YIFLAANSSLKGQSDFKKFEKARVLKSHVDNIRRVYTDELKDKLMANRQRATALYFIDRL 496
Query: 247 ALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKR 306
ALRAGNEK +D+ADTVGCCSLR EHI L P V FDFLGKDSIRYYNE+ V+ +
Sbjct: 497 ALRAGNEKGDDEADTVGCCSLRYEHITLKP-----PNKVVFDFLGKDSIRYYNEMTVDDQ 551
Query: 307 VFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNEL 365
VFKN+ +F + K+ D LFDRLNT++LNK+L++ MEGLTAKVFRTYNAS T Q++L +
Sbjct: 552 VFKNINIFKRDPKREGDPLFDRLNTAILNKYLNKFMEGLTAKVFRTYNASHTFQEELRK- 610
Query: 366 MDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE---------------- 409
+ + +EK+LAYNRANR VA+LCNHQRSVPK H + L++
Sbjct: 611 TPVNGTVSEKLLAYNRANRQVAILCNHQRSVPKGHSSQIAKLQDKILAIKYDLMKVKQQM 670
Query: 410 -----KISNKRKQVKDAERALKDAKKAGESKAMTD----------------KKKTALGRL 448
K+ R ++++ E L D ++ + + +K+ L L
Sbjct: 671 LELDPKLKKTRPELQEPESDLDDEFIENHTRFLEECESERLQQRLDKENEKRKEDGLPLL 730
Query: 449 KE----------QLLKLE-----------VQET---DKEENKTIALGTSKLNYLDPRISV 484
KE + KLE Q+T DK+ENKT ALGTSK+NY+DPRIS
Sbjct: 731 KELPEKRTSSITSIEKLEKKYATLCDRIAAQKTSIIDKDENKTTALGTSKINYIDPRISA 790
Query: 485 TW 486
W
Sbjct: 791 AW 792
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 100/176 (56%), Gaps = 16/176 (9%)
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRI----------SVTWLASWTENVQGQVKYIM 502
LKL VQ E TI +G PR +VTWLA W ENV KYI
Sbjct: 384 LKLRVQP----EQVTINIGADSTIPEPPRGHKWGSIINDNTVTWLAMWKENVNNSFKYIF 439
Query: 503 LNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALR 562
L +S LKG+ D++K+E AR L ++ IR Y + K K M RQRA ALYFID+LALR
Sbjct: 440 LAANSSLKGQSDFKKFEKARVLKSHVDNIRRVYTDELKDKLMANRQRATALYFIDRLALR 499
Query: 563 AGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKIYNKTQRAKFRWAIDMATADFVF 618
AGNEK +D+ADTVGCCSLR EHI L + K +++ + R+ +M D VF
Sbjct: 500 AGNEKGDDEADTVGCCSLRYEHITL--KPPNKVVFDFLGKDSIRYYNEMTVDDQVF 553
>gi|357145005|ref|XP_003573489.1| PREDICTED: DNA topoisomerase 1-like [Brachypodium distachyon]
Length = 900
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 238/498 (47%), Positives = 325/498 (65%), Gaps = 19/498 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M G+ ++L+ EE+AT +A M + EY TK+ F NF DWRK + + VI
Sbjct: 378 MLYNGQPVELTPAQEEVATMFAVMKDTEYATKKTFIDNFFGDWRKILGKNH--VIKKFEL 435
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF ++ + +++ E++K M+ EEKK +++E +++ +DG +EK+GNFR+EPPG
Sbjct: 436 CDFTPIYEWHLREKEKKKQMTSEEKKALREEKLKQEEKFMWAVVDGTREKVGNFRVEPPG 495
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTE 179
LFRGRGEHPKMGKLKRR+ DI IN + VP P G WKEV+HDN VTWLA W +
Sbjct: 496 LFRGRGEHPKMGKLKRRILPSDITINIGSGTPVPECPMEGQSWKEVKHDNTVTWLAFWND 555
Query: 180 NV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ Q KY+ L SS LKG+ D +KYE +RKL INKIR NY D+K K+ +Q AV
Sbjct: 556 PISQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKDHINKIRVNYTKDFKCKDTAKKQIAV 615
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y IDKLALRAGNEKD+D+ADTVGCC+L+V+++ P + FDFLGKDSIRY+
Sbjct: 616 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNVTCEP-----PNKLQFDFLGKDSIRYF 670
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
N V VE V+K ++ F KK D +FD+L+T+ LN HL +LM GLTAKVFRTYNASITL
Sbjct: 671 NTVEVELPVYKAIEEFRAGKKSGDSVFDKLDTTKLNAHLKDLMPGLTAKVFRTYNASITL 730
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN---KR 415
L++ + + EKI Y RAN+ VA++CNHQR+V KSHD M L EKI +R
Sbjct: 731 DAILHQETEEGKTLLEKIAVYQRANKEVAIICNHQRAVSKSHDSQMTKLNEKIDELVAQR 790
Query: 416 KQVKDAERALKDAKKAGESKAMTDKKKTA-------LGRLKEQLLKLEVQETDKEENKTI 468
++K+ +K K G+ K+ A + +++ ++ K+E+++ KE+ KT+
Sbjct: 791 DELKEDLVKVKRGKPLGKGADGKPKRNLAPEAIEKKISQIETKIEKMEMEKKTKEDLKTV 850
Query: 469 ALGTSKLNYLDPRISVTW 486
ALGTSK+NYLDPRI+V W
Sbjct: 851 ALGTSKINYLDPRITVAW 868
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + Q KY+ L SS LKG+ D +KYE +RKL INKIR NY D+K
Sbjct: 546 TVTWLAFWNDPISQKDFKYVFLAASSSLKGQSDKEKYEKSRKLKDHINKIRVNYTKDFKC 605
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
K+ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V+++
Sbjct: 606 KDTAKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNV 649
>gi|308810078|ref|XP_003082348.1| putative DNA topoisomerase I (ISS) [Ostreococcus tauri]
gi|116060816|emb|CAL57294.1| putative DNA topoisomerase I (ISS) [Ostreococcus tauri]
Length = 783
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/483 (48%), Positives = 312/483 (64%), Gaps = 18/483 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+++KL EEIA F+A M + +Y K F NFM +++++ A ITD KCDF
Sbjct: 262 GQDVKLLPHEEEIAGFFAVMKDTDYAQKAVFVKNFMDGFKEALANGPHAFITDFRKCDFT 321
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
KM+ +F + EE+K M+ EEKK+IK E + + Y TIDG +EK+GNFRIEPPGLFRG
Sbjct: 322 KMYNHFAKIREEKKQMTSEEKKRIKAEKDKAEEMYTWATIDGRREKVGNFRIEPPGLFRG 381
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGK+KRRV EDI IN KD++VPPPPPGH WK V H++ TWLA W + + +
Sbjct: 382 RGEHPKMGKIKRRVMPEDITINIGKDARVPPPPPGHSWKAVIHNDTATWLAGWNDVINVK 441
Query: 185 V-KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
KY+ +S +K E D +KYE AR L K I KIR +Y+ + +S+ + Q AV Y +
Sbjct: 442 DWKYVQFGATSTVKAESDQKKYEKARSLHKFIEKIRADYKRNMQSESREMAQLAVTTYLV 501
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALRAG EKDED ADTVG C+LR HI+ E+ V+ FDFLGKDSI+Y + +
Sbjct: 502 DKLALRAGGEKDEDLADTVGVCTLRAGHIKFMEDN-----VIEFDFLGKDSIQYLQQHKI 556
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
++ +K LQ FV++K D+FD ++ S +N HL LM GLT KVFRTYNASITL L
Sbjct: 557 DEVAYKCLQRFVKDKGPDVDIFDLIDPSKVNAHLQTLMPGLTIKVFRTYNASITLDSLLA 616
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+ D + + +K Y+ AN+ VA+LCNHQ+ V K+HD+ MG L +K + KQ+ D
Sbjct: 617 D-TDTNLTTLQKKAKYDAANKEVAILCNHQKGVSKAHDEQMGKLNDKKKDLAKQITDM-- 673
Query: 424 ALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRIS 483
+ +K L LKE+ KL +Q KEE KT++LGTSK+NYLDPRI+
Sbjct: 674 ---------KKNKDDKNQKKKLTALKERAAKLAIQMEMKEELKTVSLGTSKINYLDPRIT 724
Query: 484 VTW 486
++W
Sbjct: 725 LSW 727
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 70/109 (64%), Gaps = 1/109 (0%)
Query: 483 SVTWLASWTENVQGQV-KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+ TWLA W + + + KY+ +S +K E D +KYE AR L K I KIR +Y+ + +S
Sbjct: 427 TATWLAGWNDVINVKDWKYVQFGATSTVKAESDQKKYEKARSLHKFIEKIRADYKRNMQS 486
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
+ + Q AV Y +DKLALRAG EKDED ADTVG C+LR HI+ E+
Sbjct: 487 ESREMAQLAVTTYLVDKLALRAGGEKDEDLADTVGVCTLRAGHIKFMED 535
>gi|357162496|ref|XP_003579431.1| PREDICTED: DNA topoisomerase 1-like [Brachypodium distachyon]
Length = 807
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 241/498 (48%), Positives = 322/498 (64%), Gaps = 20/498 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M G+ + L+ + EE+AT +A M + EY +KE F NF DWRK + + +I
Sbjct: 286 MLYNGQPVDLTPEQEEVATMFAVMRDTEYASKETFINNFFTDWRKILGKTH--IIKKFEL 343
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF ++ + +++ E +K M+ EEKK ++DE ++Y +DG KEK+GNFR+EPPG
Sbjct: 344 CDFTTIYEWHLREKENKKQMTTEEKKALRDEKGKREEKYLWAIVDGVKEKVGNFRVEPPG 403
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTE 179
LFRGRGEHPKMG+LKRR++ DI IN K + VP P PG WKEV+HDN VTWLA W +
Sbjct: 404 LFRGRGEHPKMGRLKRRIRPNDITINIGKGTPVPVCPIPGESWKEVKHDNTVTWLAFWND 463
Query: 180 NV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ Q KY+ L SS LKG+ D +KYE ARKL I+ IR NY D++SK+ +Q AV
Sbjct: 464 PINQKDFKYVFLAASSSLKGQSDKEKYEKARKLKDHIDNIRVNYTKDFRSKDQVKKQIAV 523
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y +DKLALRAGNEKDED+ADTVGCC+L+VE++ P + FDFLGKDSIRY
Sbjct: 524 ATYLVDKLALRAGNEKDEDEADTVGCCTLKVENVTCLP-----PNKLQFDFLGKDSIRYL 578
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
N V VE V++ ++ F K D++F ++T LN HL ELM GLTAKVFRTYNAS+TL
Sbjct: 579 NTVEVELPVYEAVKEFCAGKNKGDNVFAEIDTIKLNAHLKELMPGLTAKVFRTYNASVTL 638
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
LN+ + D + +KI Y RAN+ VA++CNHQR+V KSHD M L EKI + Q
Sbjct: 639 DAMLNKETE-DGTLLQKISIYKRANKEVAIICNHQRAVSKSHDSQMAKLNEKIDELKVQR 697
Query: 419 KDAERALKDAKKA---GESKAMTDKKKTALGRLKEQLLKLE-------VQETDKEENKTI 468
+ L+ AKK G+ K + KKK L+ ++ +E + + + EE+KT+
Sbjct: 698 DGLKAELEKAKKGKRPGDDKDGSRKKKLTPEMLENKISGIEAKIEGMVITKNNTEESKTV 757
Query: 469 ALGTSKLNYLDPRISVTW 486
ALGTSK+NYLDPRI+V W
Sbjct: 758 ALGTSKINYLDPRITVAW 775
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + Q KY+ L SS LKG+ D +KYE ARKL I+ IR NY D++S
Sbjct: 454 TVTWLAFWNDPINQKDFKYVFLAASSSLKGQSDKEKYEKARKLKDHIDNIRVNYTKDFRS 513
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
K+ +Q AVA Y +DKLALRAGNEKDED+ADTVGCC+L+VE++
Sbjct: 514 KDQVKKQIAVATYLVDKLALRAGNEKDEDEADTVGCCTLKVENV 557
>gi|187369229|dbj|BAG31375.1| topoisomerase I [Ophiorrhiza japonica]
Length = 927
Score = 450 bits (1157), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/492 (48%), Positives = 322/492 (65%), Gaps = 21/492 (4%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
+ L+ + EE+AT +A M++ +Y K F NF DW+K + + I +L CDF ++
Sbjct: 412 ITLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNH--TIQNLEDCDFGPIY 469
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGE 127
+ Q+ E++K M+ EEKK +K++ ++Y +DG KEK+GNFR+EPPGLFRGRGE
Sbjct: 470 EWHQQEKEKKKQMTTEEKKALKEDKLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 529
Query: 128 HPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENV-QGQV 185
HPKMGKLK+R++ DI IN KD+ +P P PG +WKEVR+DN VTWLA W + + Q +
Sbjct: 530 HPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAFWIDPINQKEF 589
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-KSKEMRIRQRAVALYFID 244
KY+ L SS LKG+ D +KYE AR L I+ IR Y D+ +K+ +Q AVA Y ID
Sbjct: 590 KYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLID 649
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD+D+ADTVGCC+L+VE+++ P ++ FDFLGKDSIRY NEV VE
Sbjct: 650 KLALRAGNEKDDDEADTVGCCTLKVENVE-----PVPPNILKFDFLGKDSIRYQNEVQVE 704
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
VFK +Q F K+GS+DLFDRL+TS LN HL ELM GLTAKVFRTYNASITL L++
Sbjct: 705 PAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSK 764
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
AEK++ Y AN+ VA++CNHQR+V KSH M L EKI + +++ +
Sbjct: 765 ETK-GGEVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTAMEELKTD 823
Query: 425 LKDAKKA-GESKAMTDKKKTAL---------GRLKEQLLKLEVQETDKEENKTIALGTSK 474
L KK SK K K L ++ ++ K+E + KE+ KT+ALGTSK
Sbjct: 824 LSRVKKGKPPSKGADGKPKRNLNPEALERKMAQINAKIEKMERDKETKEDLKTVALGTSK 883
Query: 475 LNYLDPRISVTW 486
+NYLDPRI+V W
Sbjct: 884 INYLDPRITVAW 895
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-K 540
+VTWLA W + + Q + KY+ L SS LKG+ D +KYE AR L I+ IR Y D+
Sbjct: 573 TVTWLAFWIDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTN 632
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
+K+ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 633 NKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 678
>gi|50291575|ref|XP_448220.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527531|emb|CAG61171.1| unnamed protein product [Candida glabrata]
Length = 744
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/412 (54%), Positives = 287/412 (69%), Gaps = 11/412 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE----KERAVITDLSK 60
GK + L AEE+A F+A ++ ++ F NF +D+ + + E + + IT K
Sbjct: 147 GKPVDLPPAAEEVAGFFANLLHTDHAKNPVFQKNFFEDFLQVLKESGGTRNKINITVFKK 206
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KM+ YF K EE++ MS+EEKK+IK E + +++ C +DG KE++GNFR+EPP
Sbjct: 207 CDFSKMNQYFELKKEEKRNMSREEKKQIKLEKDKFEEKFKFCELDGRKEQVGNFRVEPPD 266
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV EDII+N SKD+ +PP P GH W E+RHDN V WLA W EN
Sbjct: 267 LFRGRGAHPKTGKLKRRVYPEDIILNLSKDAPIPPAPQGHHWGEIRHDNTVQWLAMWKEN 326
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ G KY+ L +S L G+ D +K+E AR+L K I IR++Y+ +KSK M RQ+AVA
Sbjct: 327 IFGSFKYVRLAANSSLNGQSDLKKFEKARELKKYIGDIRKDYRESFKSKIMLERQKAVAT 386
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
YFID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIRY+ E
Sbjct: 387 YFIDVFALRAGGEKSEDEADTVGCCSLRFEHVTLK-----PPNTVIFDFLGKDSIRYHQE 441
Query: 301 VPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V VEK+VFKNL++F KK DDLFDRL+ S+LNK+L M GLTAKVFRTYNAS T+Q
Sbjct: 442 VEVEKQVFKNLKIFKRPPKKDGDDLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQ 501
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
QL+ L+ + + AEK+L YN ANRAVA+LCNHQRSV K H +S+ + +KI
Sbjct: 502 DQLD-LIPNEGTVAEKLLKYNAANRAVAILCNHQRSVTKGHAQSVEKMNQKI 552
>gi|187369231|dbj|BAG31376.1| topoisomerase I [Camptotheca acuminata]
Length = 894
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 241/494 (48%), Positives = 319/494 (64%), Gaps = 20/494 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ + EE+AT +A M++ +Y TK F NFM DWRK + + VI +L CDF
Sbjct: 377 GKPVDLTPEQEEVATMFAVMLDTDYMTKSKFKENFMDDWRKILGKNH--VIQNLEDCDFT 434
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + ++ E++K M+ EEKK +K+E ++Y ++G KEK+GNFR+EPP LFRG
Sbjct: 435 PIYEWHQREKEKKKKMTAEEKKVLKEERLKQEEKYMWAIVNGVKEKVGNFRVEPPSLFRG 494
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMGKLK+ ++ DI IN KD+ +P P PG WKE+RHDN VTWLA W + ++
Sbjct: 495 RGEHPKMGKLKKCIRPSDITINIGKDAPIPECPIPGESWKEIRHDNTVTWLAFWNDPIKP 554
Query: 184 -QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L SS LKG+ D +KYE AR L I IR Y D+ SK++ RQ AVA Y
Sbjct: 555 REFKYVFLAASSSLKGQSDKEKYEKARLLKDFIQGIRAAYTKDFASKDITKRQIAVATYL 614
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+VE+++ P ++ FDFLGKDSIRY NEV
Sbjct: 615 IDKLALRAGNEKDDDEADTVGCCTLKVENVEPKP-----PSILKFDFLGKDSIRYQNEVE 669
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+K +Q F K+G DDLFD+L+TS LN HL LM GLTAKVFRTYNASITL + L
Sbjct: 670 VELPVYKAIQQFRTGKRGGDDLFDKLDTSKLNAHLKGLMPGLTAKVFRTYNASITLDEML 729
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
+ + AEKI+ Y AN+ VA++CNHQR+V KSH M L KI + + +
Sbjct: 730 SRETK-GGNVAEKIVVYQHANKEVAIICNHQRTVSKSHPAQMTRLNGKIDELKGILDGLQ 788
Query: 423 RALKDAKKAGESKAMTDKK----------KTALGRLKEQLLKLEVQETDKEENKTIALGT 472
L AKK D K + +G+ ++ K+E + KE KTIALGT
Sbjct: 789 TDLARAKKGKPPLEDADGKPKRNLTPEALERKIGQTNAKIEKMERDKETKEGLKTIALGT 848
Query: 473 SKLNYLDPRISVTW 486
SK++YLDPRI+V W
Sbjct: 849 SKISYLDPRITVAW 862
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + ++ + KY+ L SS LKG+ D +KYE AR L I IR Y D+ S
Sbjct: 541 TVTWLAFWNDPIKPREFKYVFLAASSSLKGQSDKEKYEKARLLKDFIQGIRAAYTKDFAS 600
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 601 KDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 645
>gi|393217865|gb|EJD03354.1| hypothetical protein FOMMEDRAFT_20466 [Fomitiporia mediterranea
MF3/22]
Length = 824
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 222/422 (52%), Positives = 292/422 (69%), Gaps = 12/422 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE---KERAVITD 57
M+ GK + L D+EE+A FY +M+E ++ FN NF KD+ K + E ++ +I +
Sbjct: 227 MKYDGKPVNLPPDSEEVAGFYGQMLETDHAQDAVFNKNFFKDFLKVLEEHPPRDGTMIKE 286
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
+CDFR M Y+ + ++KAM+ EKK K E + + + C +DG KEK+GNFRIE
Sbjct: 287 FDRCDFRPMFDYYEAQKAKKKAMTTAEKKAAKAEKDKVEAPFTTCVLDGRKEKVGNFRIE 346
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRGEHP+ G LK RV+ ED+ IN + + +P P KWK V HD VTWLA+W
Sbjct: 347 PPGLFRGRGEHPRKGSLKLRVRPEDVTINIGESATIPKPNMPGKWKAVIHDQTVTWLANW 406
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
TENV G KY+ L S LKG+ D K+E AR+L + +++IR++Y + +SK M RQRA
Sbjct: 407 TENVNGNHKYVFLAAGSSLKGQSDMMKFEKARELKEHVDRIRKDYNVELRSKLMADRQRA 466
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
A+YFID+LALRAGNEK ED+ADTVGCCSLR EH+ L P + FDFLGKDSIR+
Sbjct: 467 TAMYFIDRLALRAGNEKGEDEADTVGCCSLRCEHVTLE-----PPNFLIFDFLGKDSIRF 521
Query: 298 YNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
Y V VE ++FKN+++F ENK+ SD LFDR+ T++LNKHL M+GLTAKVFRTYNASIT
Sbjct: 522 YKRVEVEPQIFKNIRIFKENKEDSDALFDRVTTTLLNKHLQSYMKGLTAKVFRTYNASIT 581
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQ 417
LQQQL D S EK+ A+N+ANR VA+LCNHQRSVPK+H SM EK+++K +
Sbjct: 582 LQQQLEVYTPSDGSVQEKLNAFNKANRMVAILCNHQRSVPKTHSASM----EKMTDKLRA 637
Query: 418 VK 419
+K
Sbjct: 638 IK 639
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 81/105 (77%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTENV G KY+ L S LKG+ D K+E AR+L + +++IR++Y + +SK
Sbjct: 399 TVTWLANWTENVNGNHKYVFLAAGSSLKGQSDMMKFEKARELKEHVDRIRKDYNVELRSK 458
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M RQRA A+YFID+LALRAGNEK ED+ADTVGCCSLR EH+ L
Sbjct: 459 LMADRQRATAMYFIDRLALRAGNEKGEDEADTVGCCSLRCEHVTL 503
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 402 KSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETD 461
K L+E+I + + K E+ K + + +K + A+ +L E++ ++Q D
Sbjct: 708 KPESELQERIKDIEDEFKRLEKERGTGKASLKRARPVEKIEEAIEKLTERIKTHKLQMVD 767
Query: 462 KEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIMLNPSS-KLKGEKDWQ 516
+EE K +ALGTSK+NYLDPRI+ W ++ ++ +L ++ +KDW+
Sbjct: 768 REEGKEVALGTSKINYLDPRITQAWCKEYSVPIEKIFSKTLLAKFPWAMEVDKDWR 823
>gi|395145932|gb|AFN53406.1| DNA topoisomerase 1, partial [Temnothorax rugatulus]
Length = 267
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 207/253 (81%), Positives = 233/253 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++HEYTTK AFN NF DWR+ MTE ERA ITDL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHEYTTKTAFNNNFFHDWREVMTESERAKITDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+K+EK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKDEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLAKSI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAKSIDKIRAEYRDDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/127 (69%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLAKSI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAKSIDKIRAEYRDDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|224061073|ref|XP_002300344.1| predicted protein [Populus trichocarpa]
gi|222847602|gb|EEE85149.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 248/494 (50%), Positives = 324/494 (65%), Gaps = 20/494 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ + EE+AT +A M + +Y K F NF DWRK + + VI L CDF
Sbjct: 360 GKPIDLTPEQEEVATMFAVMKDTDYVQKPQFRQNFWNDWRKLLGKNH--VIQKLDDCDFN 417
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + Q+ E++K MS EEKK +K+E ++Y ++G KEK+GNFR+EPPGLFRG
Sbjct: 418 PIYEWHQQEKEKKKQMSTEEKKVLKEEKLKQEEKYMWAIVNGVKEKVGNFRVEPPGLFRG 477
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMGKLK R++ DI IN KD+ +P P PG +WKEV+HDN VTWLA W + +
Sbjct: 478 RGEHPKMGKLKSRIRPSDITINIGKDAPIPECPIPGERWKEVKHDNTVTWLAFWNDPINP 537
Query: 184 -QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L SS LKG+ D +KYE ARKL I+ IR Y D+ SK++ RQ AVA Y
Sbjct: 538 KEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRAAYTKDFASKDITKRQIAVATYL 597
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+V +++ P + FDFLGKDSIRY N V
Sbjct: 598 IDKLALRAGNEKDDDEADTVGCCTLKVANVECIP-----PNKLKFDFLGKDSIRYENTVE 652
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+K + F KK +DDLFD L+TS LN HL ELM GLTAKVFRTYNASITL ++L
Sbjct: 653 VELPVYKAIGHFQVAKKQTDDLFDSLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEKL 712
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
E + D AEKI+ YN+AN+ VA++CNHQR++ KSHD M L EKI + +K+ +
Sbjct: 713 YEETE-DGDVAEKIVIYNQANKQVAIICNHQRTISKSHDAQMSRLTEKIEELKSTLKELK 771
Query: 423 RALKDAKKAGES-KAMTDKKKTAL---------GRLKEQLLKLEVQETDKEENKTIALGT 472
L AKK K K+K +L +++ K+E+ KE+ KT+ALGT
Sbjct: 772 TDLDRAKKGKPPLKGADGKQKRSLTPEAIEKKIATTNQKIEKMEMAMKTKEDLKTVALGT 831
Query: 473 SKLNYLDPRISVTW 486
SK+NYLDPRI+V W
Sbjct: 832 SKINYLDPRITVAW 845
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L SS LKG+ D +KYE ARKL I+ IR Y D+ S
Sbjct: 524 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRAAYTKDFAS 583
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 584 KDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVANVE 628
>gi|224116648|ref|XP_002317355.1| predicted protein [Populus trichocarpa]
gi|222860420|gb|EEE97967.1| predicted protein [Populus trichocarpa]
Length = 860
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 243/494 (49%), Positives = 322/494 (65%), Gaps = 20/494 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ + EE+AT +A M + EY K F NF DWR + + VI L CDF
Sbjct: 343 GKPVDLTPEQEEVATMFAVMKDTEYVQKPQFLQNFWNDWRTLLGKNH--VIQKLEACDFN 400
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + ++ E++K MS EEKK +++E + Y ++G KEK+GNFR+EPPGLFRG
Sbjct: 401 PIYEWHQKEKEKKKQMSTEEKKAVREEKLKQEEMYMWAIVNGVKEKVGNFRVEPPGLFRG 460
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMGKLK R++ DI IN KD+ +P P PG +WKEV+HDN VTWLA W + +
Sbjct: 461 RGEHPKMGKLKSRIRPSDITINIGKDAPIPKCPIPGERWKEVKHDNTVTWLAFWNDPINP 520
Query: 184 -QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L SS LKG+ D +KYE ARKL I+ IR Y D+ SK++ RQ AVA Y
Sbjct: 521 KEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRTAYTKDFASKDITKRQIAVATYL 580
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+V +++ P + FDFLGKDSIRY N V
Sbjct: 581 IDKLALRAGNEKDDDEADTVGCCTLKVANVECIP-----PNKLKFDFLGKDSIRYENTVE 635
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+K ++ F KK +DDLFD L+TS LN HL ELM GLTAKVFRTYNASITL ++L
Sbjct: 636 VELPVYKAIRQFQVAKKPTDDLFDSLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEKL 695
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVK--- 419
E + D AEK + YN+AN+ VA++CNHQR++ KSHD M L EK+ + +K
Sbjct: 696 YEETE-DGDVAEKFVIYNQANKQVAIICNHQRTISKSHDAQMSRLTEKLEELKGTLKEFK 754
Query: 420 -DAERA------LKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGT 472
D +RA LKDA + + + + +++ K+E+ KE+ KT+ALGT
Sbjct: 755 TDLDRAKKGKPPLKDADGKQKRNLTPEAIEKKIATTNQKIEKMELSMKTKEDLKTVALGT 814
Query: 473 SKLNYLDPRISVTW 486
SK+NYLDPRI+V W
Sbjct: 815 SKINYLDPRITVAW 828
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L SS LKG+ D +KYE ARKL I+ IR Y D+ S
Sbjct: 507 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRTAYTKDFAS 566
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 567 KDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVANVE 611
>gi|225465097|ref|XP_002266885.1| PREDICTED: DNA topoisomerase 1 [Vitis vinifera]
gi|296082698|emb|CBI21703.3| unnamed protein product [Vitis vinifera]
Length = 857
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 249/496 (50%), Positives = 323/496 (65%), Gaps = 25/496 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ + EE+AT +A M++ +Y KE F NFM DWRK + + VI L CDF
Sbjct: 341 GKPVDLTPEQEEVATMFAVMLDTDYMQKEKFKENFMADWRKILGKNH--VIQRLDDCDFT 398
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + ++ E++K MS EEKK +K+E + ++Y +DG KEK+GNFR+EPPGLFRG
Sbjct: 399 PIYEWHQEEKEKKKQMSTEEKKTLKEEKLKLEEKYMWAIVDGVKEKVGNFRVEPPGLFRG 458
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMGKLKRR+ DI IN K+S++P P PG WKEV+HDN VTWLA W + +
Sbjct: 459 RGEHPKMGKLKRRIHPSDITINIGKNSQIPECPIPGESWKEVKHDNTVTWLAFWNDPINP 518
Query: 184 -QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L SS LKG+ D +KYE ARKL I IR Y D+ SK++ RQ AVA Y
Sbjct: 519 KEFKYVFLAASSSLKGQSDKEKYEKARKLKNYIKDIRATYTKDFVSKDITKRQIAVATYL 578
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+VE++ + E P + FDFLGKDSIRY V
Sbjct: 579 IDKLALRAGNEKDDDEADTVGCCTLKVENV-IPEP----PNSLQFDFLGKDSIRYEKTVE 633
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+K ++ F K GSDDLFD+L+TS LN HL ELM GLTAKVFRTYNASITL + L
Sbjct: 634 VELPVYKAIEQFRVGKSGSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEML 693
Query: 363 NELMDPDFSE---AEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVK 419
N+ D E A+K++ Y AN+ VA++CNHQR++ KSH M L EKI + +
Sbjct: 694 NK----DTKEGDVAQKVVVYQHANKEVAIICNHQRTISKSHTAQMTRLTEKIDEMKGVLN 749
Query: 420 DAERALKDAKKAGESKAMTDKKKTAL---------GRLKEQLLKLEVQETDKEENKTIAL 470
+ L AKK D K+ L + ++ K+E + KE+ KT+AL
Sbjct: 750 GLKTDLARAKKGKPPLKDADGKRRNLTPEALERKIAQTNAKIEKMERDKDTKEDLKTVAL 809
Query: 471 GTSKLNYLDPRISVTW 486
GTSK+NYLDPRISV W
Sbjct: 810 GTSKINYLDPRISVAW 825
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L SS LKG+ D +KYE ARKL I IR Y D+ S
Sbjct: 505 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKNYIKDIRATYTKDFVS 564
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
K++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE++
Sbjct: 565 KDITKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV 608
>gi|296421046|ref|XP_002840077.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636289|emb|CAZ84268.1| unnamed protein product [Tuber melanosporum]
Length = 938
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/418 (51%), Positives = 289/418 (69%), Gaps = 10/418 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M+ GG E+ L +AEE+A F+ M++ ++ + F NF KD++ + + I K
Sbjct: 344 MKYGGVEVTLPLEAEEVAGFFGAMLDTQHASNPTFAENFFKDFQAIL---KHVNILSFQK 400
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF+ M+ YF +K E+KA+ +K +K E + ++Y C +DG KEK+GNFR+EPPG
Sbjct: 401 CDFKPMYDYFEEKKAEKKALGLAGRKALKAEKDKAEEKYLYCYLDGRKEKVGNFRVEPPG 460
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRGEHPK G +K RVQ E + IN K++ VP PPPGH W +V HDN VTWLA+W EN
Sbjct: 461 LFRGRGEHPKTGMVKARVQPEQVTINIGKEATVPAPPPGHSWADVIHDNTVTWLATWKEN 520
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ G +KY+ML +S LKG D++K+E AR+L I++IRE+Y D KS+ M RQRA A+
Sbjct: 521 INGNIKYVMLAATSSLKGMSDFKKFEKARELKNHIDRIREDYTRDLKSELMADRQRATAM 580
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y IDKLALRAGNEK +D+ADTVGCCSLR EHI L P VV FDFLGKDSIR+Y +
Sbjct: 581 YLIDKLALRAGNEKSDDEADTVGCCSLRYEHITLEP-----PNVVVFDFLGKDSIRFYQK 635
Query: 301 VPVEKRVFKNLQLFVENKKGSDDL-FDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
PV +VFKNL++F + K D+ FDRL+T+ LNKHL M+GL+AKVFRTYNAS T+Q
Sbjct: 636 TPVIHQVFKNLKIFKKAPKTKGDMIFDRLDTTQLNKHLQNYMQGLSAKVFRTYNASWTMQ 695
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQ 417
+QL+E+ + + + EK AYN AN+ VA+LCNHQR+V +H+ M +EKI R Q
Sbjct: 696 EQLDEIPN-EGAVHEKYAAYNLANKKVAILCNHQRTVSTTHETMMQKQEEKIKGLRYQ 752
>gi|452824469|gb|EME31472.1| DNA topoisomerase I [Galdieria sulphuraria]
Length = 780
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 234/523 (44%), Positives = 327/523 (62%), Gaps = 46/523 (8%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKE+ LS AEE+ATF+A+ + EY K F NF +D+++ ++ E+ + L + +F
Sbjct: 231 GKEIYLSPKAEEVATFFAQKLATEYVKKPQFRKNFWEDFQQHLSNDEKKKLKSLDEINFT 290
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + + +KA++ EKK I++E + K+Y V +DG +EK+GNFR+EPPGLF G
Sbjct: 291 PIYEHLEAQKNAKKALTSAEKKAIREEEQEKVKKYTVAIVDGKEEKVGNFRVEPPGLFLG 350
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHP MGK+K+R+ EDI IN +D+ VP P GH+W ++ H+N+VTWLA W +++ G
Sbjct: 351 RGEHPLMGKVKKRIMPEDITINIGEDAPVPECPIAGHRWGQIIHNNKVTWLAGWKDSITG 410
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
KY+ L+ S+ KG+ D QKYE ARKL I++IR++Y +S + RQR+ ALYFI
Sbjct: 411 GYKYVWLSAGSRFKGQSDQQKYEKARKLKNYIDEIRKDYTKGLQSDSLEERQRSTALYFI 470
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D+LALR GNEKDED+ADTVGCCSLRVEHI LH+ P V FDFLGKDSIRY N V V
Sbjct: 471 DRLALRVGNEKDEDEADTVGCCSLRVEHITLHD-----PNAVEFDFLGKDSIRYINTVTV 525
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
+ VF NL+ FV KK D++FD+L LN HL LM GL+AKVFRTYNASITL + L+
Sbjct: 526 DGPVFYNLKEFVRGKKPEDEIFDKLTVQGLNDHLKTLMPGLSAKVFRTYNASITLARLLS 585
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
E K+ YN+AN+ VA+LCNHQR++P SH++ M L+ K+ + + + E+
Sbjct: 586 ERKFESEDLNNKLTFYNQANKEVAILCNHQRTLPVSHEQQMNRLQSKLDEALEWLHELEQ 645
Query: 424 ALKDAKK-------------------------------------AGESKAM---TDKKKT 443
ALK AK+ ESK T +
Sbjct: 646 ALKKAKRDKKDSVEVVQYVRPKPNFRNDMTQIEREAERKRVAELPRESKVRQMKTSNLPS 705
Query: 444 ALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ + ++++ K+ + + KEE K +ALGTSK+NYLDPRI+V W
Sbjct: 706 QIEKAEQRVEKIRLDMSMKEELKNVALGTSKINYLDPRITVAW 748
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 80/106 (75%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W +++ G KY+ L+ S+ KG+ D QKYE ARKL I++IR++Y +S
Sbjct: 398 VTWLAGWKDSITGGYKYVWLSAGSRFKGQSDQQKYEKARKLKNYIDEIRKDYTKGLQSDS 457
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHE 589
+ RQR+ ALYFID+LALR GNEKDED+ADTVGCCSLRVEHI LH+
Sbjct: 458 LEERQRSTALYFIDRLALRVGNEKDEDEADTVGCCSLRVEHITLHD 503
>gi|380699335|gb|AFD94960.1| topoisomerase I, partial [Stenamma sp. mgb12]
Length = 293
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/279 (76%), Positives = 248/279 (88%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFN NF DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GEEMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFHDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YFV KSEERKAM+KEEK+KIK++ E I KEYG C IDGHK+KIGNF+IEPPGLFRG
Sbjct: 75 EMHTYFVLKSEERKAMTKEEKQKIKEKTEEIQKEYGFCRIDGHKQKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHP MGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN++GQ
Sbjct: 135 RGEHPLMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIRGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+ L+PSSKLKGEKDWQKYETARKL + I+KIR Y+ DWKSKEMRIRQ AVALYFID
Sbjct: 195 VKYVNLSPSSKLKGEKDWQKYETARKLGQLIDKIRAEYREDWKSKEMRIRQWAVALYFID 254
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEK E+QADTVGCCSLRVEHI+L E++DG+ Y
Sbjct: 255 KLALRAGNEKYENQADTVGCCSLRVEHIKLQEQRDGRQY 293
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/149 (65%), Positives = 117/149 (78%), Gaps = 1/149 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN++GQVKY+ L
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIRGQVKYVNL 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
+PSSKLKGEKDWQKYETARKL + I+KIR Y+ DWKSKEMRIRQ AVALYFIDKLALRA
Sbjct: 201 SPSSKLKGEKDWQKYETARKLGQLIDKIRAEYREDWKSKEMRIRQWAVALYFIDKLALRA 260
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
GNEK E+QADTVGCCSLRVEHI+L E++D
Sbjct: 261 GNEKYENQADTVGCCSLRVEHIKLQEQRD 289
>gi|354543170|emb|CCE39888.1| hypothetical protein CPAR2_603070 [Candida parapsilosis]
Length = 821
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/417 (53%), Positives = 298/417 (71%), Gaps = 13/417 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE--KERAVITDLSKCD 62
GK + L +AEE+A F+ M+E ++ F +NF +D+++ + E I+D +K D
Sbjct: 227 GKPVNLPIEAEEVAGFFGAMVETDHAKNPVFQSNFFQDFQQVLKECGGCGVEISDFNKLD 286
Query: 63 FRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLF 122
F KMHAYF +K EE+KAMSK+EK+++K+E E I + Y C ++G KE +GNFRIEPPGLF
Sbjct: 287 FSKMHAYFEKKREEKKAMSKDEKRRLKEEKEKIEEPYKTCLLNGRKELVGNFRIEPPGLF 346
Query: 123 RGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQ 182
RGRG HPK GKLKRRV E + +N S +KVP PPPGH+W EVRHDN+VTWLA W EN+
Sbjct: 347 RGRGAHPKTGKLKRRVYPEQVTLNLSAHAKVPDPPPGHQWAEVRHDNEVTWLAMWKENIA 406
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
KY+ +S +KG+ D++K+ETAR+L K ++ IR++Y KS++M+ RQ A A+Y
Sbjct: 407 DSFKYVRFAANSSVKGQSDFKKFETARELRKYVDAIRKDYTKMLKSEKMQDRQMATAMYL 466
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
ID ALRAG EK ED+ADTVGCCSLR EHI L P V FDFLGKDSIR+Y EV
Sbjct: 467 IDVYALRAGGEKGEDEADTVGCCSLRFEHITLKP-----PNTVIFDFLGKDSIRFYQEVE 521
Query: 303 VEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
V K+VFKNL++F E K+ D+LFDR+N S++NK L M+GLTAKVFRTYNAS T+Q Q
Sbjct: 522 VSKQVFKNLRIFKKEPKQPGDNLFDRINPSMVNKQLQNYMKGLTAKVFRTYNASKTMQDQ 581
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
L+ L+ + + AEK++ +N ANR VA+LCNHQR+V K+H GN +KIS+K K++
Sbjct: 582 LD-LIPNEGTAAEKVVKFNAANRTVAILCNHQRTVSKNH----GNSVQKISDKLKEL 633
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 75/104 (72%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ KY+ +S +KG+ D++K+ETAR+L K ++ IR++Y KS++
Sbjct: 395 VTWLAMWKENIADSFKYVRFAANSSVKGQSDFKKFETARELRKYVDAIRKDYTKMLKSEK 454
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A+Y ID ALRAG EK ED+ADTVGCCSLR EHI L
Sbjct: 455 MQDRQMATAMYLIDVYALRAGGEKGEDEADTVGCCSLRFEHITL 498
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 406 NLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEEN 465
++KEK+ + K ++ LK K +K +K + + +++ +Q DKE+N
Sbjct: 708 DIKEKLDKIHELEKQYKKELKTGKPELPAKMTVEKCYQQIETFENRIVATSLQLKDKEDN 767
Query: 466 KTIALGTSKLNYLDPRISVTW 486
++LGTSK+NY+DPR++V +
Sbjct: 768 SEVSLGTSKMNYIDPRLTVMF 788
>gi|380699341|gb|AFD94963.1| topoisomerase I, partial [Stenamma sp. mgb27]
Length = 290
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/279 (77%), Positives = 250/279 (89%), Gaps = 3/279 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EEIATFYARM++H+YT K AFN NF DWR++MTE ER ITDLSKC+F+
Sbjct: 15 GKEMKLSEETEEIATFYARMLDHDYTIKAAFNNNFFYDWRENMTESERDKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSE AM+KEEK+KIK++NE I +EYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSE---AMTKEEKQKIKEKNEEIQREYGFCSIDGHKEKIGNFKIEPPGLFRG 131
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 132 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDSNVTWLASWTENIQGQ 191
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+MLNPSSKLKGEKD QKYETARKLA+SI+KIR Y+ DWKSKEM IRQ+AVALYFID
Sbjct: 192 MKYVMLNPSSKLKGEKDRQKYETARKLAQSIDKIRAKYREDWKSKEMHIRQQAVALYFID 251
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
KLALRAGNEKDED+ADTVGCCSLRVEHI+LHE++D + Y
Sbjct: 252 KLALRAGNEKDEDRADTVGCCSLRVEHIKLHEQRDDRQY 290
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 101/152 (66%), Positives = 124/152 (81%), Gaps = 1/152 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQ+KY+ML
Sbjct: 138 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDSNVTWLASWTENIQGQMKYVML 197
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKD QKYETARKLA+SI+KIR Y+ DWKSKEM IRQ+AVALYFIDKLALRA
Sbjct: 198 NPSSKLKGEKDRQKYETARKLAQSIDKIRAKYREDWKSKEMHIRQQAVALYFIDKLALRA 257
Query: 564 GNEKDEDQADTVGCCSLRVEHIQLHEEKDEKK 595
GNEKDED+ADTVGCCSLRVEHI+LHE++D+++
Sbjct: 258 GNEKDEDRADTVGCCSLRVEHIKLHEQRDDRQ 289
>gi|111306235|gb|AAI21626.1| Unknown (protein for IMAGE:7859693), partial [Xenopus (Silurana)
tropicalis]
Length = 495
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 210/307 (68%), Positives = 251/307 (81%), Gaps = 1/307 (0%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + LS AEE+A+F+A+M++HEYTTKE F N+ DWRK MT +ER VITDL+KCDF
Sbjct: 160 GKPLPLSLQAEEVASFFAKMLDHEYTTKEIFRNNYFMDWRKEMTLEERMVITDLAKCDFT 219
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M Y+ K EE+K SKE+K KIK+ENE + +EYG C++D H+E+IGNF+IEPP LFRG
Sbjct: 220 EMFTYYKGKMEEKKNKSKEDKLKIKEENEKLLQEYGYCSMDHHRERIGNFKIEPPALFRG 279
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPK G LK+R+ EDIIINCSKDSK+P PPPGHKWKEVRHDN VTWLASWTENVQG
Sbjct: 280 RGDHPKQGMLKKRILPEDIIINCSKDSKIPEPPPGHKWKEVRHDNTVTWLASWTENVQGS 339
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLN +SKLKGEKDW+KYE ARKL + IR+ Y+ ++KSKEM++RQRAVALYFID
Sbjct: 340 VKYIMLNANSKLKGEKDWEKYEVARKLKHHVVTIRKTYRENFKSKEMKVRQRAVALYFID 399
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E DG YVV FDFLGKDSIRYYN+
Sbjct: 400 KLALRAGNEKEEGETADTVGCCSLRVEHIKLYPELDGDKYVVEFDFLGKDSIRYYNKFLW 459
Query: 304 EKRVFKN 310
+ R K
Sbjct: 460 KSRSLKT 466
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 83/111 (74%), Positives = 97/111 (87%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTENVQG VKYIMLN +SKLKGEKDW+KYE ARKL + IR+ Y+ ++KSK
Sbjct: 325 TVTWLASWTENVQGSVKYIMLNANSKLKGEKDWEKYEVARKLKHHVVTIRKTYRENFKSK 384
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EM++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E D
Sbjct: 385 EMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLYPELD 435
>gi|430814640|emb|CCJ28154.1| unnamed protein product [Pneumocystis jirovecii]
Length = 870
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 262/576 (45%), Positives = 341/576 (59%), Gaps = 88/576 (15%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWRKSMTEKERAVIT--- 56
M+ GK + L +AEE+A F+ M+ E K F NF D+++ + +K AV
Sbjct: 279 MKYDGKPIDLPPEAEEVAGFFGAMLSSEQHVKNPTFQKNFFNDFQQ-ICKKTNAVNNIHI 337
Query: 57 ---------------DLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGV 101
KCDF M YF +K EE+K MSKEEKKK+K+E +A+ ++Y
Sbjct: 338 HIYIISNVIQPFIPETFEKCDFTPMFEYFEKKKEEKKNMSKEEKKKLKEEKDALEEKYKY 397
Query: 102 CTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHK 161
C +DG KEK+GNFRIEPPGLFRGRG+HPK GKLK RV E +IIN KD+ VP PPPGH
Sbjct: 398 CYLDGRKEKVGNFRIEPPGLFRGRGDHPKTGKLKMRVLPEQVIINIGKDATVPSPPPGHT 457
Query: 162 WKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIREN 221
WKE+RHDN VTWLA+W ENV VKY+ L+ S LKG+ D++KYE ARKL I+ IR+
Sbjct: 458 WKEIRHDNTVTWLATWNENVNNNVKYVFLSAGSSLKGQSDFKKYEKARKLKMYIDDIRKQ 517
Query: 222 YQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGK 281
Y+ + K + IRQRA A+Y ID ALRAGNEK ED+ADTVGCCSLR EH+ L
Sbjct: 518 YRKELKDELTEIRQRATAMYLIDVFALRAGNEKGEDEADTVGCCSLRYEHVSL-----SP 572
Query: 282 PYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDD-LFDRLNTSVLNKHLSEL 340
P V FDFLGKDSIRYYNEV V+ +VFKNL++F K D LFDRLNTS LN HL+ L
Sbjct: 573 PNTVVFDFLGKDSIRYYNEVQVDPQVFKNLKIFKRPPKTEGDMLFDRLNTSKLNNHLTSL 632
Query: 341 MEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSH 400
M GL+AKVFRT+NAS T+ +QL D S +K+LAYNRANR VA+LCNHQR+V K+H
Sbjct: 633 MPGLSAKVFRTHNASYTMSEQLKNTPS-DASIPDKVLAYNRANRMVAILCNHQRTVSKAH 691
Query: 401 DKSMGNLKEKISNK--------------------------RKQVKDAERALKDAKKAGES 434
D M +++K+ K +K KD E+ L +K
Sbjct: 692 DAQMERIEDKVILKLFIIIIEEWIKEHQITLLEKERDKIIKKFEKDNEKLLNQNEKPMPQ 751
Query: 435 KAM------------TDKKKTALGRLKEQLLKLEVQETDKE------------------- 463
+ + K + G+++ + L +++ D++
Sbjct: 752 SHLEKLLEKVDEMEKSFKIENETGKVEPKTRGLTIKKLDRQIEKINERIRNMKAMMIDKD 811
Query: 464 ENKTIALGTSKLNYL----DPRISVTWLASWTENVQ 495
ENKT ALGTSK+NY+ DPR++ W A + N++
Sbjct: 812 ENKTTALGTSKINYMFLYSDPRLTYAWCAKYGVNIE 847
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+W ENV VKY+ L+ S LKG+ D++KYE ARKL I+ IR+ Y+ + K +
Sbjct: 466 TVTWLATWNENVNNNVKYVFLSAGSSLKGQSDFKKYEKARKLKMYIDDIRKQYRKELKDE 525
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE---------KDE 593
IRQRA A+Y ID ALRAGNEK ED+ADTVGCCSLR EH+ L KD
Sbjct: 526 LTEIRQRATAMYLIDVFALRAGNEKGEDEADTVGCCSLRYEHVSLSPPNTVVFDFLGKDS 585
Query: 594 KKIYNKTQ 601
+ YN+ Q
Sbjct: 586 IRYYNEVQ 593
>gi|389740120|gb|EIM81312.1| hypothetical protein STEHIDRAFT_67037 [Stereum hirsutum FP-91666
SS1]
Length = 794
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/414 (52%), Positives = 285/414 (68%), Gaps = 9/414 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSM---TEKERAVITD 57
M+ GK + L +EE+A FY MIE ++ FN NF +DW K + ++ ITD
Sbjct: 198 MKYNGKPVDLPPASEEVAGFYGAMIETDHAKDATFNKNFFQDWLKVLKKNPPRDGTKITD 257
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
+CDFR M +F + ++KA++ EKK++K + + +Y C +DG KEK+GNFR+E
Sbjct: 258 FERCDFRPMFEFFEAEKAKKKALTSAEKKELKKQKDEAEGKYTTCLLDGRKEKVGNFRVE 317
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRG+HP+ G LK RV EDI +N ++ +P P KWK V HDN VTWLA+W
Sbjct: 318 PPGLFRGRGDHPRKGALKLRVGPEDITLNIGANATIPTPNVPGKWKTVIHDNTVTWLATW 377
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
ENV G KY+ L S LKG+ D K+E AR+L I++IR++Y D K+K M +RQRA
Sbjct: 378 VENVNGNHKYVFLAAGSSLKGQSDMMKFEKARELKNHIDRIRQDYNEDMKNKVMALRQRA 437
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
A+YFID LALRAGNEK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIRY
Sbjct: 438 TAVYFIDILALRAGNEKGEDEADTVGCCSLRCEHVTLEP-----PNYVAFDFLGKDSIRY 492
Query: 298 YNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
YN V VE++VFKN+++F + KK DDLFDR+N +LNKHL M+GL+AKVFRTYNASIT
Sbjct: 493 YNRVTVEQQVFKNIRIFKDGKKDDDDLFDRVNVRLLNKHLQSYMKGLSAKVFRTYNASIT 552
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
Q+QL++ + EK+ YN ANR VA+LCNHQR+ PK+H++SMG +K+K+
Sbjct: 553 FQKQLDD-TPAKGTLQEKLNHYNHANRMVAILCNHQRAAPKTHEQSMGKMKDKL 605
>gi|358057102|dbj|GAA97009.1| hypothetical protein E5Q_03683 [Mixia osmundae IAM 14324]
Length = 863
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/419 (51%), Positives = 290/419 (69%), Gaps = 14/419 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV---ITDLSKC 61
G+ + L +AEE+A F+ +IE ++ F NF D+++ + + I + +C
Sbjct: 262 GQPVDLPPEAEEVAGFFGALIESDHAENRTFVDNFFADFQEVLKDHPPTNGIDIQEFDRC 321
Query: 62 DFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGL 121
DFR M +F ++ E RK+M+K++K K+K + EA+ + Y C ++G KEK+GNFR+EPPGL
Sbjct: 322 DFRPMFEHFEREKEARKSMTKDQKAKVKADKEALEEPYKFCLLNGRKEKVGNFRVEPPGL 381
Query: 122 FRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENV 181
FRGRG+HPK GKLK+R+QAE I +N KD+KVP PP GH W +V HDN VTWLA+W EN+
Sbjct: 382 FRGRGQHPKTGKLKKRLQAEQITLNIGKDAKVPEPPAGHSWAKVEHDNTVTWLATWRENI 441
Query: 182 QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALY 241
KY+ L S LKG+ D +K+E AR+L I++IR +Y+A+ K+KEM IRQRA +Y
Sbjct: 442 NDAFKYVFLAAGSSLKGQSDHKKFEKARELKNHIDRIRTDYRAELKAKEMVIRQRATCMY 501
Query: 242 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEV 301
ID ALRAGNEK +D+ADTVGCCSLR EHI L P +V FDFLGKDSIR+ E
Sbjct: 502 LIDIFALRAGNEKGDDEADTVGCCSLRYEHITLQ-----PPNIVIFDFLGKDSIRFVQEA 556
Query: 302 PVEKRVFKNLQLFVENKKGSDD-LFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
V+++VFKNL +F ++ K D LFDR++T LNKHL M GL+AKVFRTYNAS T ++
Sbjct: 557 RVDEQVFKNLVIFKKDPKTDGDLLFDRMSTLTLNKHLRTYMNGLSAKVFRTYNASSTFER 616
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVK 419
+L E D S +K+LAYNRANR VA+LCNHQRSV K+H +M EK+++K + VK
Sbjct: 617 EL-EKTPADVSVPDKLLAYNRANRQVAILCNHQRSVSKTHSAAM----EKLADKLRAVK 670
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 78/106 (73%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+W EN+ KY+ L S LKG+ D +K+E AR+L I++IR +Y+A+ K+K
Sbjct: 430 TVTWLATWRENINDAFKYVFLAAGSSLKGQSDHKKFEKARELKNHIDRIRTDYRAELKAK 489
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLH 588
EM IRQRA +Y ID ALRAGNEK +D+ADTVGCCSLR EHI L
Sbjct: 490 EMVIRQRATCMYLIDIFALRAGNEKGDDEADTVGCCSLRYEHITLQ 535
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%)
Query: 434 SKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
S+ +K ++ +L E++ +Q D+EE K ++L TSK+NY+DPR+SV W
Sbjct: 779 SRLTEEKLLASIAKLTERIEAQRMQALDREEGKEVSLTTSKINYIDPRLSVVW 831
>gi|334683309|dbj|BAK32956.1| topoisomerase I [Ophiorrhiza fucosa]
Length = 926
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/492 (48%), Positives = 320/492 (65%), Gaps = 21/492 (4%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
+ L+ + EE+AT +A M++ +Y K F NF DW+K + + I +L CDF ++
Sbjct: 411 LTLTPEQEEVATMFAAMLDTDYMNKPRFKENFFSDWKKILGKNH--TIQNLEDCDFGPIY 468
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGE 127
+ Q+ E++K M+ EEKK +KDE + ++Y +DG KEK+GNFR+EPPGLFRGRGE
Sbjct: 469 EWHQQEREKKKQMTTEEKKALKDERLQLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 528
Query: 128 HPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQ-GQV 185
HPK+GKLK+R+ DI IN KD+ +P P PG +WKEVR+DN VTWLA W + V +
Sbjct: 529 HPKVGKLKKRIHPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWNDPVNLKEC 588
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-KSKEMRIRQRAVALYFID 244
KY+ L PSS LKG+ D +KYE AR L I+ IR Y D+ +K+ +Q AVA Y ID
Sbjct: 589 KYVFLAPSSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLID 648
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD+D+ADTVGCC+L+VE+++ P ++ DF+GKDSIRY NEV VE
Sbjct: 649 KLALRAGNEKDDDEADTVGCCTLKVENVE-----PVPPNILKIDFIGKDSIRYQNEVQVE 703
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
VFK +Q F K+GS+DLFDRL+TS LN HL ELM GLTAKVFRTYNASITL L++
Sbjct: 704 PAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSK 763
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
AEK+ Y AN+ VA++CNHQR+V KSH M L EKI + +++ +
Sbjct: 764 ETK-GGKVAEKVGVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKTD 822
Query: 425 LKDAKKA--------GESKAMTDKK--KTALGRLKEQLLKLEVQETDKEENKTIALGTSK 474
L AKK GE K + + + + + ++ K+E + KE+ K +AL TSK
Sbjct: 823 LSRAKKGKPPSKGDDGEPKRNLNPEALERKIAQTNAKIEKMERDKKTKEDLKAVALSTSK 882
Query: 475 LNYLDPRISVTW 486
++YLDPRI+V W
Sbjct: 883 ISYLDPRITVAW 894
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 483 SVTWLASWTENVQ-GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-K 540
+VTWLA W + V + KY+ L PSS LKG+ D +KYE AR L I+ IR Y D+
Sbjct: 572 TVTWLAYWNDPVNLKECKYVFLAPSSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTN 631
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
+K+ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 632 NKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 677
>gi|334683311|dbj|BAK32957.1| topoisomerase I [Ophiorrhiza harrisiana]
Length = 920
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 237/492 (48%), Positives = 320/492 (65%), Gaps = 21/492 (4%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
+ L+ + EE+AT +A M++ +Y TK F NF DW+K + + + +L CDF ++
Sbjct: 411 LTLTPEQEEVATMFAVMLDTDYMTKPRFKENFFSDWKKMLGKNH--TVQNLEDCDFGPIY 468
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGE 127
+ Q+ E+RK M+ EEKK +K+E ++Y +DG KEK+GNFR+EPPGLFRGRGE
Sbjct: 469 EWHQQEKEKRKQMTTEEKKALKEERLQQEEKYMRAIVDGVKEKVGNFRVEPPGLFRGRGE 528
Query: 128 HPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQ-GQV 185
HPK+GKLK+R+ DI IN KD+ +P P PG +WKEVR+DN VTWLA W + V +
Sbjct: 529 HPKVGKLKKRIHPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWNDPVNLKEC 588
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-KSKEMRIRQRAVALYFID 244
KY+ L PSS LKG+ D +KYE AR L I+ IR Y D+ +K+ +Q AVA Y ID
Sbjct: 589 KYVFLAPSSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLID 648
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD+D+ADTVGCC+L+VE+++ P ++ DF+GKDSIRY NEV VE
Sbjct: 649 KLALRAGNEKDDDEADTVGCCTLKVENVE-----PVPPNILKIDFIGKDSIRYQNEVQVE 703
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
VFK +Q F K+GS+DLFDRL+TS LN HL ELM GLTAKVFRTYNASITL L++
Sbjct: 704 PAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSK 763
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
AEK+ Y AN+ VA++CNHQR+V KSH M L EKI + +++ +
Sbjct: 764 ETK-GGKVAEKVGVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKTD 822
Query: 425 LKDAKKA--------GESKAMTDKK--KTALGRLKEQLLKLEVQETDKEENKTIALGTSK 474
L AKK GE K + + + + + ++ K+E + KE+ K +AL TSK
Sbjct: 823 LSRAKKGKPPSKGDDGEPKRNLNPEALERKIAQTNAKIEKMERDKKTKEDLKAVALSTSK 882
Query: 475 LNYLDPRISVTW 486
++YLDPRI+V W
Sbjct: 883 ISYLDPRITVAW 894
Score = 115 bits (288), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 483 SVTWLASWTENVQ-GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-K 540
+VTWLA W + V + KY+ L PSS LKG+ D +KYE AR L I+ IR Y D+
Sbjct: 572 TVTWLAYWNDPVNLKECKYVFLAPSSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTN 631
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
+K+ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 632 NKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 677
>gi|334683323|dbj|BAK32963.1| topoisomerase I [Ophiorrhiza sp. 35]
Length = 920
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/492 (48%), Positives = 319/492 (64%), Gaps = 21/492 (4%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
+ L+ + EE+AT +A M++ +Y K F NF DW+K + + I +L CDF ++
Sbjct: 411 LTLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNH--TIQNLEDCDFGPIY 468
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGE 127
+ Q+ E++K M+ EEKK +KDE ++Y +DG KEK+GNFR+EPPGLFRGRGE
Sbjct: 469 EWHQQEREKKKQMTTEEKKALKDERLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 528
Query: 128 HPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQ-GQV 185
HPK+GKLK+R+ DI IN KD+ +P P PG +WKEVR+DN VTWLA W + V +
Sbjct: 529 HPKVGKLKKRIHPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWNDPVNLKEC 588
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-KSKEMRIRQRAVALYFID 244
KY+ L PSS LKG+ D +KYE AR L I+ IR Y D+ +K+ +Q AVA Y ID
Sbjct: 589 KYVFLAPSSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLID 648
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD+D+ADTVGCC+LRVE+++ P ++ DF+GKDSIRY NEV VE
Sbjct: 649 KLALRAGNEKDDDEADTVGCCTLRVENVE-----PVPPNILKIDFIGKDSIRYQNEVQVE 703
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
VFK +Q F K+GS+DLFDRL+TS LN HL ELM GLTAKVFRTYNASITL L++
Sbjct: 704 PAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSK 763
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
AEK+ Y AN+ VA++CNHQR+V KSH M L EKI + +++ +
Sbjct: 764 ETK-GGKVAEKVGVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKTD 822
Query: 425 LKDAKKA--------GESKAMTDKK--KTALGRLKEQLLKLEVQETDKEENKTIALGTSK 474
L AKK GE K + + + + + ++ K+E + KE+ K +AL TSK
Sbjct: 823 LSRAKKGKPPSKGDDGEPKRNLNPEALERKIAQTNAKIEKMERDKKTKEDLKAVALSTSK 882
Query: 475 LNYLDPRISVTW 486
++YLDPRI+V W
Sbjct: 883 ISYLDPRITVAW 894
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 483 SVTWLASWTENVQ-GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-K 540
+VTWLA W + V + KY+ L PSS LKG+ D +KYE AR L I+ IR Y D+
Sbjct: 572 TVTWLAYWNDPVNLKECKYVFLAPSSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTN 631
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
+K+ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+LRVE+++
Sbjct: 632 NKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLRVENVE 677
>gi|395325235|gb|EJF57661.1| hypothetical protein DICSQDRAFT_68959 [Dichomitus squalens LYAD-421
SS1]
Length = 803
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/414 (53%), Positives = 284/414 (68%), Gaps = 8/414 (1%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSM---TEKERAVITD 57
M+ G+ + L +AEE+A FY M+E E+ FN NF D+ K + K IT
Sbjct: 206 MKYNGQPVDLPPEAEEVAGFYGAMLETEHAKDATFNKNFFDDFLKILKKYPPKNGLKITK 265
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
CDFR M +F + E++K+M+ EKK K +A+ Y C +DG KEK+GNFR+E
Sbjct: 266 FELCDFRPMFEHFEAEKEKKKSMTAAEKKAAKAAKDALEAPYTHCFLDGRKEKVGNFRVE 325
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRG+HPK G LK RV+ EDI IN KD+ VP P +WKEV HDN VTWLA+W
Sbjct: 326 PPGLFRGRGDHPKKGALKLRVRPEDITINIGKDAPVPKPNVPGEWKEVVHDNTVTWLANW 385
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
ENV G KY+ L S +KG+ DW K+E AR+L K ++KIR +Y KSK M RQRA
Sbjct: 386 VENVNGNYKYVFLAAGSSIKGQSDWTKFEKARELKKYVDKIRLDYNDALKSKNMAERQRA 445
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
A+YFIDKLALRAGNEK E++ADTVGCCSLR EH+ L P + FDFLGKDSIRY
Sbjct: 446 TAMYFIDKLALRAGNEKGEEEADTVGCCSLRCEHVTLE-----PPNKLVFDFLGKDSIRY 500
Query: 298 YNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
YNEV V+ +V+KN+++F +K D+LFDR+NT LN+HL+ M+GLTAKVFRT+NAS+T
Sbjct: 501 YNEVAVDDQVYKNIRIFKNDKNDDDELFDRVNTGALNRHLASYMKGLTAKVFRTFNASLT 560
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
Q+ L+ + EK+ AYN ANR VA+LCNHQR+VPK+H++SMG ++EK+
Sbjct: 561 FQELLDRGTPEKGTVQEKLNAYNHANRMVAILCNHQRAVPKTHEQSMGKMREKL 614
>gi|344299987|gb|EGW30327.1| hypothetical protein SPAPADRAFT_142998 [Spathaspora passalidarum
NRRL Y-27907]
Length = 781
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/416 (54%), Positives = 288/416 (69%), Gaps = 13/416 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV--ITDLSKCD 62
GK + L AEE+A FYA M+E ++ F NF D+ + + E I D +K D
Sbjct: 187 GKPVNLPLQAEEVAGFYAAMLETDHAKNPVFQKNFFDDFCQVLKECGGCGVDINDFTKMD 246
Query: 63 FRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLF 122
F KM+A+F + EE+K MS+EEKK+IK E E + + Y C ++G KE +GNFRIEPPGLF
Sbjct: 247 FSKMYAHFEKLREEKKLMSREEKKQIKLEKERLEEPYKTCYLNGRKELVGNFRIEPPGLF 306
Query: 123 RGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQ 182
RGRG HPK GKLKRRV+ ED+ +N +D KVP PP GHKW E+RHDN VTWLA W EN+
Sbjct: 307 RGRGAHPKTGKLKRRVKPEDVTLNLGRDVKVPEPPAGHKWGEIRHDNTVTWLAMWKENIA 366
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
KY+ SS +KG+ D++K+ETAR L I+ IR++Y +S++M+ RQ A A Y
Sbjct: 367 DSFKYVRFAASSSVKGQSDFKKFETARNLRNHIDAIRKDYTEMLRSEKMQDRQMATATYL 426
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
ID ALRAG EK ED+ADTVGCCSLR EHI L P V FDFLGKDSIR+Y EV
Sbjct: 427 IDVFALRAGGEKGEDEADTVGCCSLRFEHITLK-----PPNKVIFDFLGKDSIRFYQEVE 481
Query: 303 VEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
V+K+VFKNL++F E K+ DDLFDR+N S+LNKH M+GLTAKVFRTYNAS T+Q Q
Sbjct: 482 VDKQVFKNLRIFKKEPKQPGDDLFDRINPSILNKHFQNYMKGLTAKVFRTYNASKTMQDQ 541
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQ 417
L+ L+ + + AEK++ +N ANR VA+LCNHQRSV K+H S+ +KIS+K K+
Sbjct: 542 LD-LIPNEGTIAEKVVKFNAANRTVAILCNHQRSVSKNHGTSV----QKISDKLKE 592
>gi|395145934|gb|AFN53407.1| DNA topoisomerase 1, partial [Recurvidris sp. TH01]
Length = 267
Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/253 (80%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA ITDLS+C+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKVAFNNNFFHDWREVMTESERAKITDLSRCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK++IK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQQIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCS DS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSFDSNMPKPPAGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
+LALRAGNEKDED
Sbjct: 255 RLALRAGNEKDED 267
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/92 (86%), Positives = 87/92 (94%), Gaps = 2/92 (2%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ D
Sbjct: 178 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRED 235
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 570
WKSKEMRIRQRAVALYFID+LALRAGNEKDED
Sbjct: 236 WKSKEMRIRQRAVALYFIDRLALRAGNEKDED 267
>gi|449463731|ref|XP_004149585.1| PREDICTED: DNA topoisomerase 1-like [Cucumis sativus]
gi|449503189|ref|XP_004161878.1| PREDICTED: DNA topoisomerase 1-like [Cucumis sativus]
Length = 889
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 246/494 (49%), Positives = 317/494 (64%), Gaps = 20/494 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ EE+AT +A M + +Y K F NF DWRK + + VI +L CDF
Sbjct: 372 GKPVDLTPPQEEVATMFAVMKDTDYMLKPKFKENFWNDWRKLLGKNH--VIQNLDDCDFT 429
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ ++ + E++K M+ EEKK +K+E ++Y +DG KEK+GNFR+EPPGLFRG
Sbjct: 430 PIYDWYQMEKEKKKQMTTEEKKAVKEEKLKQEEKYMWAILDGVKEKVGNFRVEPPGLFRG 489
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENV-Q 182
RGEHPKMGKLKRR+ DI IN K + +P P PG +WKEVRHDN VTWLA W + + Q
Sbjct: 490 RGEHPKMGKLKRRICPSDITINIGKGAPIPECPIPGERWKEVRHDNTVTWLAFWNDPINQ 549
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L SS LKG+ D +KYE AR L I IR Y D+ SK+ RQ AVA Y
Sbjct: 550 KEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRNAYTKDFTSKDPTRRQIAVATYL 609
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+VE++ K P ++ F+FLGKDSIRY N V
Sbjct: 610 IDKLALRAGNEKDDDEADTVGCCTLKVENV-----KAVPPNLLEFNFLGKDSIRYENTVE 664
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE VFK + F K G+DDLFD+L+TS LN HL +LM GLTAKVFRTYNASITL L
Sbjct: 665 VELPVFKAITQFQSGKSGTDDLFDKLDTSKLNAHLKDLMPGLTAKVFRTYNASITLDDML 724
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
N + +EKI+ Y AN+ VA++CNHQR+V KSH M L EKIS R +K+ +
Sbjct: 725 NRGTK-NGEVSEKIVTYQHANKEVAIICNHQRTVSKSHGAQMTRLNEKISELRDILKELK 783
Query: 423 RALKDAKKAGESKAMTDKKK----------TALGRLKEQLLKLEVQETDKEENKTIALGT 472
L AKK +D K+ + + ++ K+E KE+ KT+ALGT
Sbjct: 784 IDLDRAKKGKPPLKGSDGKQKRNLTPEALEKKISQTNAKIEKIERDMKTKEDLKTVALGT 843
Query: 473 SKLNYLDPRISVTW 486
SK+NYLDPRI+V W
Sbjct: 844 SKINYLDPRITVAW 857
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + Q + KY+ L SS LKG+ D +KYE AR L I IR Y D+ S
Sbjct: 536 TVTWLAFWNDPINQKEFKYVFLAASSSLKGQSDKEKYEKARMLKDYIKNIRNAYTKDFTS 595
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K+ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 596 KDPTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVK 640
>gi|115474837|ref|NP_001061015.1| Os08g0154600 [Oryza sativa Japonica Group]
gi|27817923|dbj|BAC55688.1| putative DNA topoisomerase I [Oryza sativa Japonica Group]
gi|113622984|dbj|BAF22929.1| Os08g0154600 [Oryza sativa Japonica Group]
gi|222639933|gb|EEE68065.1| hypothetical protein OsJ_26075 [Oryza sativa Japonica Group]
Length = 916
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 240/498 (48%), Positives = 328/498 (65%), Gaps = 20/498 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M G+ + L+ + EE+AT +A M + +Y +K+ F NF DWRK + + VI
Sbjct: 395 MLYNGQPVDLTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKILGKNH--VIKKFEL 452
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF ++ + +++ E++K M+ EEKK +K+E ++Y +DG KEK+GNFR+EPPG
Sbjct: 453 CDFTPIYEWHLREKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPG 512
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTE 179
LFRGRGEHPKMGKLKRR++ DI IN K + +P P PG WKEV+HDN VTWLA W +
Sbjct: 513 LFRGRGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKHDNTVTWLAFWND 572
Query: 180 NV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ Q KY+ L SS LKG+ D +KYE +RKL ++KIR+ Y D++SK+ +Q AV
Sbjct: 573 PISQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAV 632
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y IDKLALRAGNEKDED+A+TVGCC+L+V+++ P + FDFLGKDSIRY+
Sbjct: 633 ATYLIDKLALRAGNEKDEDEAETVGCCTLKVDNVTCVP-----PNKLQFDFLGKDSIRYF 687
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
N V VE V+K ++ F KK DLFD+L+T+ LN HL +LM GLTAKVFRTYNASITL
Sbjct: 688 NTVEVELLVYKAIEEFRAGKKPGQDLFDKLDTTRLNAHLKDLMPGLTAKVFRTYNASITL 747
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN---KR 415
L++ + D + EKI Y RAN+ VA++CNHQRSV KSHD M L EKI +R
Sbjct: 748 DDILHKETE-DGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLNEKIDELKAQR 806
Query: 416 KQVKDAERALKDAKKAGESKAMTDKKKTA-------LGRLKEQLLKLEVQETDKEENKTI 468
++K ++ K G K K+ A + +++ ++ K+E+ + KE+ KT+
Sbjct: 807 DELKADLSKVRKGKNLGNDKDGKPKRNLAPEAFEKKISQIETKIEKMEMDKKIKEDLKTV 866
Query: 469 ALGTSKLNYLDPRISVTW 486
ALGTSK+NYLDPRI+V W
Sbjct: 867 ALGTSKINYLDPRITVAW 884
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 78/104 (75%), Gaps = 1/104 (0%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + Q KY+ L SS LKG+ D +KYE +RKL ++KIR+ Y D++S
Sbjct: 563 TVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRS 622
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
K+ +Q AVA Y IDKLALRAGNEKDED+A+TVGCC+L+V+++
Sbjct: 623 KDKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCTLKVDNV 666
>gi|125560180|gb|EAZ05628.1| hypothetical protein OsI_27847 [Oryza sativa Indica Group]
Length = 916
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 239/494 (48%), Positives = 327/494 (66%), Gaps = 20/494 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ + L+ + EE+AT +A M + +Y +K+ F NF DWRK + + VI CDF
Sbjct: 399 GQPVDLTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKILGKNH--VIKKFELCDFT 456
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + +++ E++K M+ EEKK +K+E ++Y +DG KEK+GNFR+EPPGLFRG
Sbjct: 457 PIYEWHLREKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRG 516
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENV-Q 182
RGEHPKMGKLKRR++ DI IN K + +P P PG WKEV+HDN VTWLA W + + Q
Sbjct: 517 RGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPISQ 576
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
KY+ L SS LKG+ D +KYE +RKL ++KIR+ Y D++SK+ +Q AVA Y
Sbjct: 577 KDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYL 636
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKDED+A+TVGCC+L+V+++ P + FDFLGKDSIRY+N V
Sbjct: 637 IDKLALRAGNEKDEDEAETVGCCTLKVDNVTCVP-----PNKLQFDFLGKDSIRYFNTVE 691
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+K ++ F KK DLFD+L+T+ LN HL +LM GLTAKVFRTYNASITL L
Sbjct: 692 VELLVYKAIEEFRAGKKPGQDLFDKLDTTRLNAHLKDLMPGLTAKVFRTYNASITLDDIL 751
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN---KRKQVK 419
++ + D + EKI Y RAN+ VA++CNHQRSV KSHD M L EKI +R ++K
Sbjct: 752 HKETE-DGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLNEKIDELKAQRDELK 810
Query: 420 DAERALKDAKKAGESKAMTDKKKTA-------LGRLKEQLLKLEVQETDKEENKTIALGT 472
++ K G K K+ A + +++ ++ K+E+ + KE+ KT+ALGT
Sbjct: 811 ADLSKVRKGKNLGNDKDGKPKRNLAPEAFEKKISQIETKIEKMEMDKKIKEDLKTVALGT 870
Query: 473 SKLNYLDPRISVTW 486
SK+NYLDPRI+V W
Sbjct: 871 SKINYLDPRITVAW 884
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 78/104 (75%), Gaps = 1/104 (0%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + Q KY+ L SS LKG+ D +KYE +RKL ++KIR+ Y D++S
Sbjct: 563 TVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRS 622
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
K+ +Q AVA Y IDKLALRAGNEKDED+A+TVGCC+L+V+++
Sbjct: 623 KDKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCTLKVDNV 666
>gi|334683321|dbj|BAK32962.1| topoisomerase I [Ophiorrhiza trichocarpon var. glabra]
Length = 920
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 245/492 (49%), Positives = 323/492 (65%), Gaps = 21/492 (4%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
+ L+ + EE+AT +A M++ +Y K F NF DW+K + + I +L CDF ++
Sbjct: 411 ITLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNH--TIQNLEDCDFGPIY 468
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGE 127
+ Q+ E++K M+ EEKK +K+E ++Y +DG KEK+GNFR+EPPGLFRGRGE
Sbjct: 469 EWHQQEKEKKKQMTTEEKKALKEEKLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 528
Query: 128 HPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENV-QGQV 185
HPKMGKLK+R++ DI IN KD+ +P P PG +WKEVR+DN VTWLA W + + Q +
Sbjct: 529 HPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWNDPINQKEF 588
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-KSKEMRIRQRAVALYFID 244
KY+ L SS LKG+ D +KYE AR L I+ IR Y D+ +K+ +Q AVA Y ID
Sbjct: 589 KYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLID 648
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD+D+ADTVGCC+L+VE+++ P ++ FDFLGKDSIRY NEV VE
Sbjct: 649 KLALRAGNEKDDDEADTVGCCTLKVENVE-----PVPPNILKFDFLGKDSIRYQNEVQVE 703
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
VFK +Q F K+GS+DLFDRL+TS LN HL ELM GLTAKVFRTYNASITL L++
Sbjct: 704 PAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSK 763
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
+ AEK++ Y AN+ VA++CNHQR+V KSH M L EKI + +++ +
Sbjct: 764 KTN-GGEVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKTD 822
Query: 425 LKDAKKAGE-SKAMTDKKKTALG------RLKEQLLKLEVQETDKEEN---KTIALGTSK 474
L AKK SK K K L ++ + K+E E DKE KT+ALGTSK
Sbjct: 823 LSRAKKGKPLSKGADGKPKRNLNPEALERKIAQTNAKIEKMERDKETKEDLKTVALGTSK 882
Query: 475 LNYLDPRISVTW 486
+NYLDPRI+V W
Sbjct: 883 INYLDPRITVAW 894
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-K 540
+VTWLA W + + Q + KY+ L SS LKG+ D +KYE AR L I+ IR Y D+
Sbjct: 572 TVTWLAYWNDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTN 631
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
+K+ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 632 NKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 677
>gi|187369225|dbj|BAG31373.1| topoisomerase I [Ophiorrhiza pumila]
Length = 926
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 236/492 (47%), Positives = 321/492 (65%), Gaps = 21/492 (4%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
+ L+ + EE+AT +A M++ +Y K F NF DW+K + + I +L CDF ++
Sbjct: 411 LTLTPEQEEVATMFAAMLDTDYMNKPRFKENFFSDWKKILGKNH--TIQNLEDCDFGPIY 468
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGE 127
+ Q+ E++K M+ EEKK +K+E + ++Y +DG KEK+GNFR+EPPGLFRGRGE
Sbjct: 469 EWHQQEKEKKKQMTTEEKKALKEERLQLEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 528
Query: 128 HPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQ-GQV 185
HPK+GKLK+R++ DI IN KD+ +P P PG +WKEVR+DN VTWLA W + V +
Sbjct: 529 HPKVGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWNDPVNLKEC 588
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-KSKEMRIRQRAVALYFID 244
KY+ L SS LKG+ D +KYE AR L I+ IR Y D+ +K+ +Q AVA Y ID
Sbjct: 589 KYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQVAVATYLID 648
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD+D+ADTVGCC+L+VE+++ P ++ DF+GKDSIRY NEV VE
Sbjct: 649 KLALRAGNEKDDDEADTVGCCTLKVENVE-----PVPPNILKIDFIGKDSIRYQNEVQVE 703
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
VFK +Q F K+GS+DLFDRL+TS LN HL ELM GLTAKVFRTYNASITL L++
Sbjct: 704 PAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSK 763
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
AEK+ Y RAN+ VA++CNHQR+V KSH M L EKI + +++ +
Sbjct: 764 ETK-GGKVAEKVGVYQRANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKTD 822
Query: 425 LKDAKKA--------GESKAMTDKK--KTALGRLKEQLLKLEVQETDKEENKTIALGTSK 474
L AKK GE K + + + + + ++ K+E + KE+ K +AL TSK
Sbjct: 823 LSRAKKGKPPSKGDDGEPKRNLNPEALERKIAQTNAKIEKMERDKKTKEDLKAVALSTSK 882
Query: 475 LNYLDPRISVTW 486
++YLDPRI+V W
Sbjct: 883 ISYLDPRITVAW 894
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Query: 483 SVTWLASWTENVQ-GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-K 540
+VTWLA W + V + KY+ L SS LKG+ D +KYE AR L I+ IR Y D+
Sbjct: 572 TVTWLAYWNDPVNLKECKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTN 631
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
+K+ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 632 NKDPMKKQVAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 677
>gi|15240493|ref|NP_200342.1| DNA topoisomerase 1 beta [Arabidopsis thaliana]
gi|9758163|dbj|BAB08548.1| DNA topoisomerase I [Arabidopsis thaliana]
gi|110741973|dbj|BAE98926.1| DNA topoisomerase I like protein [Arabidopsis thaliana]
gi|332009232|gb|AED96615.1| DNA topoisomerase 1 beta [Arabidopsis thaliana]
Length = 917
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 241/495 (48%), Positives = 323/495 (65%), Gaps = 22/495 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ + EE+AT +A M E EY K F NF DWRK + + +I L CDF
Sbjct: 394 GKPVDLTPEQEEVATMFAVMRETEYYKKPKFRENFWNDWRKLLGKNH--MIKSLDDCDFT 451
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ +++Q+ E +K M+ EEK+ +K+E ++Y +DG +E+IGNFR+EPPGLFRG
Sbjct: 452 PIYEWYMQEKETKKQMTAEEKRIVKEEKLKQEEKYMWAVLDGVRERIGNFRVEPPGLFRG 511
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMGKLK+R++ DI IN K++ +P P PG +WKEV+HDN VTWLA W++ +
Sbjct: 512 RGEHPKMGKLKKRIRPCDITINIGKEAPIPECPIPGERWKEVKHDNTVTWLAFWSDPINP 571
Query: 184 -QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L SS LKG+ D +KYE ARKL I IR Y D+ +K++ RQ AVA Y
Sbjct: 572 KEFKYVFLAASSSLKGQSDKEKYEKARKLHNHIGSIRAAYTKDFNNKDVTKRQIAVATYL 631
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+V +++ P + FDFLGKDSI+Y N V
Sbjct: 632 IDKLALRAGNEKDDDEADTVGCCTLKVGNVECIP-----PNKLKFDFLGKDSIQYVNTVE 686
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+K + F K +DDLFD L+TS LN HL ELM GLTAKVFRTYNASITL L
Sbjct: 687 VEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNTHLKELMAGLTAKVFRTYNASITLDLML 746
Query: 363 N-ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
+ E D D EK++ Y +AN+ VA++CNHQR+V KSH + L KI R+Q+K+
Sbjct: 747 SKETRDGDV--PEKVVVYQQANKEVAIICNHQRTVSKSHGAQVEKLAVKIEELREQIKEL 804
Query: 422 ERALKDAKKAGESKAMTD---KKKTALGRLKEQLL----KLEVQETD---KEENKTIALG 471
L AKK +D K+ L+++++ K+E E D KE+ KT+ALG
Sbjct: 805 NIDLDRAKKGRTPLMGSDGKRKRNLTPEALEKKIMQTQGKIEKMERDMQTKEDMKTVALG 864
Query: 472 TSKLNYLDPRISVTW 486
TSK+NY+DPRI+V W
Sbjct: 865 TSKINYMDPRITVAW 879
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W++ + + KY+ L SS LKG+ D +KYE ARKL I IR Y D+ +
Sbjct: 558 TVTWLAFWSDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLHNHIGSIRAAYTKDFNN 617
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 618 KDVTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 662
>gi|302788430|ref|XP_002975984.1| hypothetical protein SELMODRAFT_151078 [Selaginella moellendorffii]
gi|300156260|gb|EFJ22889.1| hypothetical protein SELMODRAFT_151078 [Selaginella moellendorffii]
Length = 525
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 243/495 (49%), Positives = 320/495 (64%), Gaps = 22/495 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M G+ + L+ + EEIAT +A M + +Y TK F NF +DW+K + K VI
Sbjct: 1 MLYNGRPVDLTPEEEEIATMFAVMKDTDYATKPVFVKNFWEDWKKVLGPKH--VIQKFEL 58
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF + + + E++K MS EEKK++K+E + Y IDG +GNFR+EPPG
Sbjct: 59 CDFTPIFDWHAAEKEKKKQMSAEEKKQLKEEKAKAEERYAWVLIDG----VGNFRVEPPG 114
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTE 179
LFRGRGEHPKMGKLKRR+ EDI++N K++ VP P PGHKWKEVRHDN VTWLA W +
Sbjct: 115 LFRGRGEHPKMGKLKRRIFPEDIVLNIGKEAPVPECPLPGHKWKEVRHDNTVTWLAFWND 174
Query: 180 NVQ-GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + KY+ L+ SS LKG+ D +KY+ ARKL I+ IRE+Y D+K+K++ RQ AV
Sbjct: 175 PINVKEFKYVFLHQSSSLKGKSDEEKYDKARKLTSKIDSIRESYTKDFKAKDVEARQIAV 234
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y ID+LALRAGNEKD+D+ADTVGCCSL+VEH+ L P + FDFLGKDSIRY
Sbjct: 235 ATYLIDRLALRAGNEKDDDEADTVGCCSLKVEHVSL-----SPPSSLEFDFLGKDSIRYQ 289
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
N V V + V+ + F + KK DLFDRL+TS LN HL + M+GLTAKVFRTYNAS TL
Sbjct: 290 NSVVVNEEVYDAIHDFKKGKKEGVDLFDRLDTSKLNAHLKKYMQGLTAKVFRTYNASYTL 349
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
+ QL E + + EK Y+RAN+ VA+LCNHQR+V K H M L+ KIS +
Sbjct: 350 ETQLKETLGATLN--EKTAEYSRANKEVAILCNHQRTVSKGHSAQMERLEAKISELKTLR 407
Query: 419 KDAERALKDAKKAGESKAMTDKKKTALGRLKEQL-------LKLEVQETDKEENKTIALG 471
++ L KK T K+ +L+++L K+ + + KE+ KT+ALG
Sbjct: 408 EELATDLGKVKKGKPPVHSTAKRPPTAEQLEKKLAQTDARIAKMTLDLSVKEDLKTVALG 467
Query: 472 TSKLNYLDPRISVTW 486
TSK+NY+DPRI+V W
Sbjct: 468 TSKINYMDPRITVAW 482
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 81/106 (76%), Gaps = 1/106 (0%)
Query: 483 SVTWLASWTENVQ-GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L+ SS LKG+ D +KY+ ARKL I+ IRE+Y D+K+
Sbjct: 165 TVTWLAFWNDPINVKEFKYVFLHQSSSLKGKSDEEKYDKARKLTSKIDSIRESYTKDFKA 224
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
K++ RQ AVA Y ID+LALRAGNEKD+D+ADTVGCCSL+VEH+ L
Sbjct: 225 KDVEARQIAVATYLIDRLALRAGNEKDDDEADTVGCCSLKVEHVSL 270
>gi|187369227|dbj|BAG31374.1| topoisomerase I [Ophiorrhiza liukiuensis]
Length = 926
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 236/492 (47%), Positives = 318/492 (64%), Gaps = 21/492 (4%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
+ L+ + EE+AT +A M++ +Y TK F NF DW+K + + + +L CDF ++
Sbjct: 411 LTLTPEQEEVATMFAVMLDTDYMTKPRFKENFFSDWKKMLGKNH--TVQNLEDCDFGPIY 468
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGE 127
+ Q+ E+RK M+ EEKK +K+E ++Y +DG KEK+GNFR+EPPGLFRGRGE
Sbjct: 469 EWHQQEKEKRKQMTTEEKKALKEERLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 528
Query: 128 HPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENV-QGQV 185
HPKMGKLK+R++ DI IN KD+ +P P PG +WKEVR+DN VTWLA W + + Q +
Sbjct: 529 HPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAFWNDPINQKEC 588
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-KSKEMRIRQRAVALYFID 244
KY+ L SS LKG+ D +KYE AR L I+ IR Y D+ +K+ +Q AVA Y ID
Sbjct: 589 KYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLID 648
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD+D+ADTVGCC+L+VE+++ P ++ DF+GKDSIRY NEV VE
Sbjct: 649 KLALRAGNEKDDDEADTVGCCTLKVENVE-----PVPPNILKIDFIGKDSIRYQNEVQVE 703
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
VFK +Q F K+G DLFDRL+TS LN HL ELM GLTAKVFRTYNASITL L++
Sbjct: 704 PAVFKAIQQFRSGKEGCADLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSK 763
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
AEK+ Y AN+ VA++CNHQR+V KSH M L EKI + +++ +
Sbjct: 764 ETK-GGKVAEKVGVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKTD 822
Query: 425 LKDAKKA--------GESKAMTDKKKT--ALGRLKEQLLKLEVQETDKEENKTIALGTSK 474
L AKK GE K + + + + ++ K+E + KE+ K +AL TSK
Sbjct: 823 LSRAKKGKPPAKGADGEPKRNLNPESLERKIAQTNAKIEKMERDKKTKEDLKAVALSTSK 882
Query: 475 LNYLDPRISVTW 486
++YLDPRI+V W
Sbjct: 883 ISYLDPRITVAW 894
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-K 540
+VTWLA W + + Q + KY+ L SS LKG+ D +KYE AR L I+ IR Y D+
Sbjct: 572 TVTWLAFWNDPINQKECKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTN 631
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
+K+ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 632 NKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 677
>gi|334683313|dbj|BAK32958.1| topoisomerase I [Ophiorrhiza pedunculata]
Length = 920
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 244/492 (49%), Positives = 322/492 (65%), Gaps = 21/492 (4%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
+ L+ + EE+AT +A M++ +Y K F NF DW+K + + I +L CDF ++
Sbjct: 411 ITLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNH--TIQNLEDCDFGPIY 468
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGE 127
+ Q+ E++K M+ EEKK +K+E ++Y +DG KEK+GNFR+EPPGLFRGRGE
Sbjct: 469 EWHQQEKEKKKQMTTEEKKALKEEKLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 528
Query: 128 HPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENV-QGQV 185
HPKMGKLK+R++ DI IN KD+ +P P PG +WKEVR+DN VTWLA W + + Q +
Sbjct: 529 HPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWNDPINQKEF 588
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-KSKEMRIRQRAVALYFID 244
KY+ L SS LKG+ D +KYE AR L I+ IR Y D+ +K+ +Q AVA Y ID
Sbjct: 589 KYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLID 648
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD+D+ADTVGCC+L+VE+++ P ++ FDFLGKDSIRY NEV VE
Sbjct: 649 KLALRAGNEKDDDEADTVGCCTLKVENVE-----PVPPNILKFDFLGKDSIRYQNEVQVE 703
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
VFK + F K+GS+DLFDRL+TS LN HL ELM GLTAKVFRTYNASITL L++
Sbjct: 704 PAVFKAIHQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSK 763
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
+ AEK++ Y AN+ VA++CNHQR+V KSH M L EKI + +++ +
Sbjct: 764 KTN-GGEVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKTD 822
Query: 425 LKDAKKAGE-SKAMTDKKKTALG------RLKEQLLKLEVQETDKEEN---KTIALGTSK 474
L AKK SK K K L ++ + K+E E DKE KT+ALGTSK
Sbjct: 823 LSRAKKGKPLSKGADGKPKRNLNPEALERKIAQTNAKIEKMERDKETKEDLKTVALGTSK 882
Query: 475 LNYLDPRISVTW 486
+NYLDPRI+V W
Sbjct: 883 INYLDPRITVAW 894
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-K 540
+VTWLA W + + Q + KY+ L SS LKG+ D +KYE AR L I+ IR Y D+
Sbjct: 572 TVTWLAYWNDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTN 631
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
+K+ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 632 NKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 677
>gi|50551651|ref|XP_503300.1| YALI0D26103p [Yarrowia lipolytica]
gi|49649168|emb|CAG81506.1| YALI0D26103p [Yarrowia lipolytica CLIB122]
Length = 760
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/421 (52%), Positives = 285/421 (67%), Gaps = 15/421 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERA------- 53
M+ G + L AEE+A F+ M+E ++ F NF D++ + E A
Sbjct: 158 MKYDGTPVVLPHAAEEVAGFFGAMLETDHAKNPTFQKNFFNDFKAVLKESGGAKDKDGNN 217
Query: 54 -VITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIG 112
I SKCDF M+A+F + EE+KAMS EKK IK E + I + + VC ++G KE++G
Sbjct: 218 VQIKAFSKCDFSDMYAHFEKMREEKKAMSAAEKKAIKAERDKIEEPFKVCLLNGRKEQVG 277
Query: 113 NFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVT 172
NFRIEPPGLFRGRG HPK GKLKRRV E I IN K VP PP GHKW EVRHDN V
Sbjct: 278 NFRIEPPGLFRGRGAHPKTGKLKRRVMPEQITINIGKGVPVPEPPAGHKWGEVRHDNSVA 337
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA W EN+ +KY++ +S LKG D++K+E AR+L K + IR++Y+ + KS+ M
Sbjct: 338 WLAMWHENINNSIKYVLFAANSSLKGMSDYKKFEKARELKKHVATIRKDYEKELKSEAMF 397
Query: 233 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGK 292
RQRA A+Y ID LALRAG EK +D+ADTVGCCSLR EHI L P +V FDFLGK
Sbjct: 398 ERQRATAMYLIDVLALRAGGEKGDDEADTVGCCSLRYEHITL-----SPPNIVEFDFLGK 452
Query: 293 DSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRT 351
DSIRY+ EV V +VFKNL++F + KK DD+FDRL+ SVLNKHL M GLTAKVFRT
Sbjct: 453 DSIRYHQEVEVSPQVFKNLRIFKKAPKKVGDDIFDRLDPSVLNKHLQNYMPGLTAKVFRT 512
Query: 352 YNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
YNAS T+ QL L+ + + AEK++ +N ANRAVA+LCNHQ++V K+H +S+G ++++I
Sbjct: 513 YNASKTMDDQL-ALIPNEGTVAEKLVKFNAANRAVAILCNHQKTVSKTHGESVGKIEDRI 571
Query: 412 S 412
+
Sbjct: 572 N 572
>gi|187369233|dbj|BAG31377.1| topoisomerase I [Catharanthus roseus]
Length = 910
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 249/497 (50%), Positives = 320/497 (64%), Gaps = 24/497 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ + EE+AT +A M++ +Y K F NF DW+K + + VI +L CDF
Sbjct: 391 GKPVDLTPEQEEVATMFAVMLDTDYMNKPRFKENFFGDWKKILGKNH--VIQNLENCDFS 448
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + + E++K M+ EEKK +K+E ++Y +DG KEK+GNFR+EPPGLFRG
Sbjct: 449 PIYEWHQSEKEKKKQMTTEEKKALKEEKLKQEEKYMWAWVDGKKEKVGNFRVEPPGLFRG 508
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMGKLK+R++ DI IN KD+ +P P PG +WKEVRHDN VTWLA W + +
Sbjct: 509 RGEHPKMGKLKKRIRPCDITINIGKDAPIPECPVPGERWKEVRHDNTVTWLAFWNDPINP 568
Query: 184 -QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L SS LKG D +KYE AR L I IR Y D+ SK+ +Q AVA Y
Sbjct: 569 KEFKYVFLAASSTLKGLSDKEKYEKARLLKDYIQGIRAAYTKDFASKDPTKKQIAVATYL 628
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+VE+++ P ++ FDFLGKDSIRY NEV
Sbjct: 629 IDKLALRAGNEKDDDEADTVGCCTLKVENVE-----PVPPNILKFDFLGKDSIRYQNEVE 683
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE VFK +Q F K+GS DLFD L+TS LN HL ELM GLTAKVFRTYNASITL L
Sbjct: 684 VEAAVFKAIQQFRSGKEGSSDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDML 743
Query: 363 N-ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
+ E D AEK++ Y AN+ VA++CNHQR+V KSH M L EKI + V++
Sbjct: 744 SRETKGGDV--AEKVVVYQHANKEVAIICNHQRTVSKSHSAQMLRLNEKIEELKAVVEEL 801
Query: 422 ERALKDAKKAG---ESKAMTDKKKTALG------RLKEQLLKLEVQETDKEEN---KTIA 469
+ L KK +SK K K L ++ + K+E E DKE KT+A
Sbjct: 802 KSDLSRVKKGKPPLKSKNADGKPKRNLNPESLEKKIAQTNAKIEKMERDKETKEDLKTVA 861
Query: 470 LGTSKLNYLDPRISVTW 486
LGTSK+NYLDPRI+V W
Sbjct: 862 LGTSKINYLDPRITVAW 878
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L SS LKG D +KYE AR L I IR Y D+ S
Sbjct: 555 TVTWLAFWNDPINPKEFKYVFLAASSTLKGLSDKEKYEKARLLKDYIQGIRAAYTKDFAS 614
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K+ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 615 KDPTKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 659
>gi|302770158|ref|XP_002968498.1| hypothetical protein SELMODRAFT_145504 [Selaginella moellendorffii]
gi|300164142|gb|EFJ30752.1| hypothetical protein SELMODRAFT_145504 [Selaginella moellendorffii]
Length = 525
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 243/495 (49%), Positives = 320/495 (64%), Gaps = 22/495 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M G+ + L+ + EEIAT +A M + +Y TK F NF +DW+K + K VI L
Sbjct: 1 MLYNGRPIDLTPEEEEIATMFAVMKDTDYATKPVFVKNFWEDWKKVLGPKH--VIQKLEL 58
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF + + + E++K MS EEKK++K+E + Y IDG +GNFR+EPPG
Sbjct: 59 CDFTPIFDWHAAEKEKKKQMSAEEKKQLKEEKAKAEERYAWVLIDG----VGNFRVEPPG 114
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTE 179
LFRGRGEHPKMGKLKRR+ EDI++N K++ VP P PGHKWKEVRHDN VTWLA W +
Sbjct: 115 LFRGRGEHPKMGKLKRRIFPEDIVLNIGKEAPVPECPLPGHKWKEVRHDNTVTWLAFWND 174
Query: 180 NVQ-GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + KY+ L+ SS LKG+ D +KY+ ARKL I+ IRE+Y D+K K++ RQ AV
Sbjct: 175 PINVKEFKYVFLHQSSSLKGKSDEEKYDKARKLTSKIDSIRESYTKDFKEKDVEARQIAV 234
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y ID+LALRAGNEKD+D+ADTVGCCSL+VEH+ L P + FDFLGKDSIRY
Sbjct: 235 ATYLIDRLALRAGNEKDDDEADTVGCCSLKVEHVSL-----SPPNSLEFDFLGKDSIRYQ 289
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
N V V + V+ + F + KK DLFDRL+TS LN HL + M+GLTAKVFRTYNAS TL
Sbjct: 290 NSVVVNEEVYDAIHDFKKGKKEGVDLFDRLDTSKLNAHLKKYMQGLTAKVFRTYNASYTL 349
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
+ QL E + + EK Y+RAN+ VA+LCNHQR+V K H M L+ KI+ +
Sbjct: 350 ETQLKETLGATLN--EKTAEYSRANKEVAILCNHQRTVSKGHSAQMERLEAKIAELKTLR 407
Query: 419 KDAERALKDAKKAGESKAMTDKKKTALGRLKEQL-------LKLEVQETDKEENKTIALG 471
++ L KK T K+ +L+++L K+ + + KE+ KT+ALG
Sbjct: 408 EELATDLGKVKKGKPPVHSTAKRPPTAEQLEKKLAQTDARIAKMTLDLSVKEDLKTVALG 467
Query: 472 TSKLNYLDPRISVTW 486
TSK+NY+DPRI+V W
Sbjct: 468 TSKINYMDPRITVAW 482
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
Query: 483 SVTWLASWTENVQ-GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L+ SS LKG+ D +KY+ ARKL I+ IRE+Y D+K
Sbjct: 165 TVTWLAFWNDPINVKEFKYVFLHQSSSLKGKSDEEKYDKARKLTSKIDSIRESYTKDFKE 224
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
K++ RQ AVA Y ID+LALRAGNEKD+D+ADTVGCCSL+VEH+ L
Sbjct: 225 KDVEARQIAVATYLIDRLALRAGNEKDDDEADTVGCCSLKVEHVSL 270
>gi|19113001|ref|NP_596209.1| DNA topoisomerase I [Schizosaccharomyces pombe 972h-]
gi|13432252|sp|P07799.2|TOP1_SCHPO RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|6723928|emb|CAB66458.1| DNA topoisomerase I [Schizosaccharomyces pombe]
Length = 814
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/409 (54%), Positives = 279/409 (68%), Gaps = 8/409 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE-KERAVITDLSKCDF 63
G + L +AEE+A FYA M+E ++ F NF +D+ K E I + SKCDF
Sbjct: 222 GNPVNLPPEAEEVAGFYAAMLETDHAKNPVFQDNFFRDFLKVCDECNFNHNIKEFSKCDF 281
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
+M +F QK EE+K+M KE+KK IK + + ++Y C +DG KEK+GNFRIEPPGLFR
Sbjct: 282 TQMFHHFEQKREEKKSMPKEQKKAIKQKKDEEEEKYKWCILDGRKEKVGNFRIEPPGLFR 341
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPK G LKRRV E I IN + VP P PGH+W EV+HDN VTWLA+W EN+
Sbjct: 342 GRGSHPKTGSLKRRVYPEQITINIGEGVPVPEPLPGHQWAEVKHDNTVTWLATWHENINN 401
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
VKY+ L S LKG+ D +KYE +RKL I+ IR+ Y+ D KS+ RQR A+Y I
Sbjct: 402 NVKYVFLAAGSSLKGQSDLKKYEKSRKLKDYIDDIRKGYRKDLKSELTVERQRGTAMYLI 461
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D ALRAGNEK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIRYYNEV V
Sbjct: 462 DVFALRAGNEKGEDEADTVGCCSLRYEHVTLKP-----PRTVVFDFLGKDSIRYYNEVEV 516
Query: 304 EKRVFKNLQLFVENKKGSDDL-FDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
+ +VFKNL++F K DL FDRL+T+ LNK+L+ LM+GL+AKVFRTYNAS T+ ++L
Sbjct: 517 DPQVFKNLKIFKRPPKKEGDLIFDRLSTNSLNKYLTSLMDGLSAKVFRTYNASYTMAEEL 576
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+ M + + A+KIL YNRANR VA+LCNHQRSV K+HD M E+I
Sbjct: 577 KK-MPKNLTLADKILFYNRANRTVAILCNHQRSVTKNHDVQMERFAERI 624
>gi|444320461|ref|XP_004180887.1| hypothetical protein TBLA_0E03140 [Tetrapisispora blattae CBS 6284]
gi|387513930|emb|CCH61368.1| hypothetical protein TBLA_0E03140 [Tetrapisispora blattae CBS 6284]
Length = 879
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/412 (53%), Positives = 279/412 (67%), Gaps = 11/412 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE----KERAVITDLSK 60
GK + L +EE+A FYA ++E ++ F NF D+ + + E + I
Sbjct: 282 GKPVDLPPSSEEVAGFYAALLETDHGKNPVFQKNFFNDFLQVLKEAGGTRNNIKIKKFEL 341
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KM+ YF K +E+KA+S +EKK+IK + E + Y C +DG KE++GNF+IEPP
Sbjct: 342 CDFTKMYDYFELKKQEKKALSSQEKKQIKLDKEKFEEPYKFCMLDGRKEQVGNFKIEPPD 401
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV ED+++N KDSK P PP GH+W E+RHDN V WLA W EN
Sbjct: 402 LFRGRGAHPKTGKLKRRVFPEDVVLNLDKDSKTPEPPEGHQWGEIRHDNTVQWLAMWREN 461
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ L +S LKG+ D +K+E AR+L I+ IR++Y+ + KSK M RQ+AVA+
Sbjct: 462 ISNSFKYVRLAANSSLKGQNDLKKFEKARQLKSHIDNIRKDYRKNLKSKVMLDRQKAVAI 521
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK +D+ADTVGCCSLR EHI L P V FDFLGKDSIRYY E
Sbjct: 522 YLIDVFALRAGGEKSDDEADTVGCCSLRYEHITLKP-----PQTVVFDFLGKDSIRYYQE 576
Query: 301 VPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+K+VFK+L +F K+ D LFDRL+ S+LNKHL M GLTAKVFRTYNAS T+Q
Sbjct: 577 VEVDKQVFKDLTIFKRPPKQPGDQLFDRLDPSILNKHLQNYMPGLTAKVFRTYNASKTMQ 636
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
QL +L+ + + AEKIL YN ANR VA+LCNHQRSV K+H S+ EKI
Sbjct: 637 DQL-DLIPNEGTIAEKILKYNAANRTVAILCNHQRSVGKNHAVSVQKSGEKI 687
>gi|255576254|ref|XP_002529020.1| DNA topoisomerase type I, putative [Ricinus communis]
gi|223531500|gb|EEF33331.1| DNA topoisomerase type I, putative [Ricinus communis]
Length = 891
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 240/494 (48%), Positives = 322/494 (65%), Gaps = 19/494 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ + L+ + EE+AT +A M + +Y K F NF DWRK + VI L CDF
Sbjct: 373 GRPVDLAPEQEEVATMFAVMKDTDYMQKPKFLENFWNDWRKLLGRNH--VIQKLEDCDFT 430
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + ++ E++K MS EEKK K+E ++Y +DG KEK+GNFR+EPP LFRG
Sbjct: 431 PIYEWHEREKEKKKQMSTEEKKAQKEEKLRQEEKYMWAIVDGVKEKVGNFRVEPPALFRG 490
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMGKLK+R+Q DI IN KD+ +P P PG WKEV+HDN VTWLA W + +
Sbjct: 491 RGEHPKMGKLKKRIQPSDITINIGKDAPIPECPIPGESWKEVKHDNTVTWLAFWNDPINP 550
Query: 184 -QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L SS LKG+ D +KYE ARKL I+ IR YQ D +SK++ +Q AVA Y
Sbjct: 551 KEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRAAYQKDLRSKDITKKQIAVATYL 610
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+V +++ + + FDFLGKDSIRY N V
Sbjct: 611 IDKLALRAGNEKDDDEADTVGCCTLKVANVECIPGS----FNLKFDFLGKDSIRYENTVE 666
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
V+ V++ + F + KK +DDLFD+L+T+ LN HL ELM GLTAKVFRTYNASITL ++L
Sbjct: 667 VKPEVYEAIGTFQKGKKQTDDLFDKLDTTKLNAHLKELMPGLTAKVFRTYNASITLDEKL 726
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVK--- 419
E + D AEK++ Y RAN+ VA++CNHQR++ KSH M L EKI + +K
Sbjct: 727 YEETE-DGDVAEKVVIYQRANKEVAIICNHQRTISKSHGAQMSKLIEKIEELKATLKELK 785
Query: 420 -DAERA------LKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGT 472
D +RA LKDA + + + + +++ K+E+ KE+ KT+ALGT
Sbjct: 786 TDLDRAKKGKPPLKDADGKQKRNLSPENIEKKIASTNQRIEKMELNMKTKEDLKTVALGT 845
Query: 473 SKLNYLDPRISVTW 486
SK+NYLDPRI+V W
Sbjct: 846 SKINYLDPRITVAW 859
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 77/105 (73%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L SS LKG+ D +KYE ARKL I+ IR YQ D +S
Sbjct: 537 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIHNIRAAYQKDLRS 596
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K++ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 597 KDITKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVANVE 641
>gi|410081714|ref|XP_003958436.1| hypothetical protein KAFR_0G02700 [Kazachstania africana CBS 2517]
gi|372465024|emb|CCF59301.1| hypothetical protein KAFR_0G02700 [Kazachstania africana CBS 2517]
Length = 754
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/412 (52%), Positives = 282/412 (68%), Gaps = 11/412 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLSK 60
GK + L DAEE+A FYA ++E ++ F NF D+ + + E + I D K
Sbjct: 157 GKPVDLPLDAEEVAGFYAALLETDHGKNPVFQKNFFNDFLQVLKETGGTLNNVEIKDFEK 216
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF K+HA+F + +++K +S +E+K+++ E E + + C +DG KE++GNFR+EPP
Sbjct: 217 CDFSKIHAFFQLQKDQKKQLSAQERKQLRLEKEKFEEPFKFCELDGRKEQVGNFRVEPPD 276
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV AEDI++N SK++ +PPPP GH+W E+RHDN V WLA W EN
Sbjct: 277 LFRGRGAHPKTGKLKRRVHAEDIVLNLSKNAPIPPPPEGHRWGEIRHDNTVQWLAMWREN 336
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ L +S LKG+ D++K+E AR+L I+ IR++Y+ + KSK M RQ+AVA+
Sbjct: 337 IFNSFKYVRLAANSSLKGQSDYKKFEKARQLKSHIDAIRKDYRKNLKSKVMLERQKAVAI 396
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y E
Sbjct: 397 YLIDVFALRAGGEKSEDEADTVGCCSLRYEHVTLK-----PPNTVIFDFLGKDSIRFYQE 451
Query: 301 VPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+K+VFKNL +F K+ LFDRL+ S+LNK+L M GLTAKVFRTYNAS T+Q
Sbjct: 452 VEVDKQVFKNLAIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQ 511
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
QL +L+ S AEK+L YN ANR VA+LCNHQR+V K H S+ KI
Sbjct: 512 DQL-DLIPNKGSVAEKLLKYNAANRTVAILCNHQRTVTKGHALSVERANMKI 562
>gi|334683317|dbj|BAK32960.1| topoisomerase I [Ophiorrhiza pseudofasciculata]
Length = 925
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 243/492 (49%), Positives = 322/492 (65%), Gaps = 21/492 (4%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
+ L+ + EE+AT +A M++ +Y K F NF DW+K + + +I +L CDF ++
Sbjct: 410 ITLTPEQEEVATMFAVMLDTDYMNKPCFKENFFSDWKKILGKNH--MIQNLEDCDFGPIY 467
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGE 127
+ Q+ E++K M+ EEKK +K+E ++Y +DG KEK+GNFR+EPPGLFRGRGE
Sbjct: 468 EWHQQEKEKKKQMTTEEKKALKEEKLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 527
Query: 128 HPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENV-QGQV 185
HPKMGKLK+R++ DI IN KD+ +P P PG +WKEVR+ N VTWLA W + + Q +
Sbjct: 528 HPKMGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNGNTVTWLAYWNDPINQKEF 587
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-KSKEMRIRQRAVALYFID 244
KY+ L SS LKG+ D +KYE AR L I+ IR Y D+ +K+ +Q AVA Y ID
Sbjct: 588 KYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLID 647
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD+D+ADTVGCC+L+VE+++ P ++ FDFLGKDSIRY NEV VE
Sbjct: 648 KLALRAGNEKDDDEADTVGCCTLKVENVE-----PVPPNILKFDFLGKDSIRYQNEVQVE 702
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
VFK +Q F K+GS+DLFDRL+TS LN HL ELM GLTAKVFRTYNASITL L++
Sbjct: 703 PAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSK 762
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
AE ++ Y AN+ VA++CNHQR+V KSH M L EKI + +++ +
Sbjct: 763 ETK-GGEVAENVVVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKTD 821
Query: 425 LKDAK------KAGESKAMTDKKKTALGR-LKEQLLKLEVQETDKEEN---KTIALGTSK 474
L AK K + KA + AL R + + K+E E DKE KT+ALGTSK
Sbjct: 822 LSRAKKGKPPTKGADGKAKRNLNPEALERKITQTNAKIEKMERDKETKEDLKTVALGTSK 881
Query: 475 LNYLDPRISVTW 486
+NYLDPRI+V W
Sbjct: 882 INYLDPRITVAW 893
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-K 540
+VTWLA W + + Q + KY+ L SS LKG+ D +KYE AR L I+ IR Y D+
Sbjct: 571 TVTWLAYWNDPINQKEFKYVFLAASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTN 630
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
+K+ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 631 NKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 676
>gi|3170997|gb|AAC18301.1| DNA topoisomerase I [Pneumocystis carinii]
Length = 763
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 229/414 (55%), Positives = 289/414 (69%), Gaps = 9/414 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHE-YTTKEAFNTNFMKDWRKSMTEKERAVITD-L 58
M+ G+ + L +AEE+A F+ ++ E Y F NF D++++ + VI +
Sbjct: 165 MKYKGEPISLPPEAEEVAGFFGAILSSEQYVKNPTFQKNFFHDFQETCKKTNAPVIPEKF 224
Query: 59 SKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEP 118
CDF M YF +K EE+K SKEEKKKIK+E +A+ ++Y C +DG KEK+GNFRIEP
Sbjct: 225 EYCDFTPMFEYFEKKKEEKKNKSKEEKKKIKEEKDALEEKYKYCFLDGRKEKVGNFRIEP 284
Query: 119 PGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWT 178
PGLFRGRG+HPK GKLK RV E +IIN KDS +P PPPGH WKEVRHDN VTWLA+W
Sbjct: 285 PGLFRGRGDHPKTGKLKTRVVPEQVIINIGKDSVIPSPPPGHNWKEVRHDNTVTWLATWN 344
Query: 179 ENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
ENV VKY+ L+ S LKG+ D +KYE AR+L I+ IR+ Y+ + + K M +RQRA
Sbjct: 345 ENVNNNVKYVFLSAGSSLKGQSDLKKYEKARELKLYIDNIRKQYRKELEDKLMEVRQRAT 404
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A+Y ID ALRAGNEK ED+ADTVGCCSLR EHI L P V FDFLGKDSIRYY
Sbjct: 405 AMYLIDLFALRAGNEKGEDEADTVGCCSLRYEHISL-----SPPNTVVFDFLGKDSIRYY 459
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDD-LFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
NEV V+ +VFKNL++F + K D LFDRLNTS LN HL+ LM GL+AKVFRT+NAS T
Sbjct: 460 NEVQVDPQVFKNLKIFKRSPKTEGDMLFDRLNTSKLNNHLTSLMPGLSAKVFRTHNASYT 519
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+ +QL D S ++K+LAYNRANR VA+LCNHQR++ K+H M +++KI
Sbjct: 520 MSEQLKN-TPKDASISDKVLAYNRANRMVAILCNHQRTISKTHSAQMERIEDKI 572
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 84/128 (65%), Gaps = 9/128 (7%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+W ENV VKY+ L+ S LKG+ D +KYE AR+L I+ IR+ Y+ + + K
Sbjct: 336 TVTWLATWNENVNNNVKYVFLSAGSSLKGQSDLKKYEKARELKLYIDNIRKQYRKELEDK 395
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE---------KDE 593
M +RQRA A+Y ID ALRAGNEK ED+ADTVGCCSLR EHI L KD
Sbjct: 396 LMEVRQRATAMYLIDLFALRAGNEKGEDEADTVGCCSLRYEHISLSPPNTVVFDFLGKDS 455
Query: 594 KKIYNKTQ 601
+ YN+ Q
Sbjct: 456 IRYYNEVQ 463
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 28/174 (16%)
Query: 343 GLTAKVFRTYNASITLQQQLNELMDPDFSEA------------EKILA---YNRANRAVA 387
L + R A +TL +L E PD SEA +K+L Y++ R
Sbjct: 574 ALKYQKIRLRKAILTLDPKL-EKSRPDLSEAVSDIDEDWIKEHQKVLIEKEYDKIKRKFQ 632
Query: 388 -----VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVK-DAERALKDAKKAGESKAMTDKK 441
++ ++ +P+S + EKI+ +++ K + E+ ++K G + D
Sbjct: 633 KDNEKLISQNETPMPESR---LEKFLEKINEMKEEFKIENEKGRVESKTRGITIETLD-- 687
Query: 442 KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQ 495
+ ++ E++ +++ DK +NKT ALGTSK+NY+DPR++ W A + N++
Sbjct: 688 -LQIKKINERIHQMKALMIDKAQNKTTALGTSKINYIDPRLTYAWCAKYGVNIE 740
>gi|255070017|ref|XP_002507090.1| DNA topoisomerase I [Micromonas sp. RCC299]
gi|226522365|gb|ACO68348.1| DNA topoisomerase I [Micromonas sp. RCC299]
Length = 635
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 227/484 (46%), Positives = 311/484 (64%), Gaps = 19/484 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G ++KL EE+ATF+A M + +Y K+ F NF ++K++ I D KCDF
Sbjct: 137 GHDVKLLPHEEEVATFFAVMKDTDYAQKDIFVKNFFDGFKKTLRGGPHGFIKDFKKCDFT 196
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
K++ + +Q+ E +K++S EEK+K+K E A ++Y TIDG +E++GN+++EPPGLFRG
Sbjct: 197 KIYMWNLQERERKKSVSAEEKRKVKAEQAAAEEKYCWATIDGRRERVGNYKVEPPGLFRG 256
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG++K+R+ EDIIIN K +KVP P PGHKWK++ H+N VTWL W + + +
Sbjct: 257 RGEHPKMGRVKKRIMPEDIIINIGKGAKVPEPLPGHKWKQIIHNNTVTWLCGWNDTINTK 316
Query: 185 -VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
KY+ +S +K E D QKYE ARKL +++ IR +Y KS + +Q AV Y +
Sbjct: 317 DWKYVQFGATSSIKAESDIQKYEKARKLKLAVDAIRRDYFKKMKSGSVLEQQLAVTTYLV 376
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALRAG EKD+D ADTVG C+LRV HI P + FDFLGKDSIRY E V
Sbjct: 377 DKLALRAGGEKDDDLADTVGVCTLRVGHIDFLP-----PSTIKFDFLGKDSIRYLQEHEV 431
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
+ VF +Q F + KK D+FD ++ + +NKHL LM GLT KVFRTYNAS TL + L
Sbjct: 432 DPLVFHAMQRFCKGKKKDQDIFDHIDPTKVNKHLQTLMPGLTIKVFRTYNASYTLNKLLK 491
Query: 364 ELMDP-DFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
E D + K AY+ AN+ VAVLCNHQ+ V K+HD M EK+ +K+K ++
Sbjct: 492 ETTPAGDSTVPMKKAAYDAANKEVAVLCNHQKGVSKAHDAQM----EKLQDKKKIIEKEI 547
Query: 423 RALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRI 482
AL+ KK D K + LKE+L KLE+Q K+E K+++LGTSK+NY+DPRI
Sbjct: 548 AALRRDKK--------DTNKAKIRTLKERLSKLELQMKMKDELKSVSLGTSKINYMDPRI 599
Query: 483 SVTW 486
++ W
Sbjct: 600 TIAW 603
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 483 SVTWLASWTENVQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWL W + + + KY+ +S +K E D QKYE ARKL +++ IR +Y KS
Sbjct: 302 TVTWLCGWNDTINTKDWKYVQFGATSSIKAESDIQKYEKARKLKLAVDAIRRDYFKKMKS 361
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+ +Q AV Y +DKLALRAG EKD+D ADTVG C+LRV HI
Sbjct: 362 GSVLEQQLAVTTYLVDKLALRAGGEKDDDLADTVGVCTLRVGHIDF 407
>gi|392594024|gb|EIW83349.1| hypothetical protein CONPUDRAFT_164310 [Coniophora puteana
RWD-64-598 SS2]
Length = 828
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/411 (52%), Positives = 276/411 (67%), Gaps = 29/411 (7%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M+ GKE+ L+ +AEE+A FY M+E ++ FN NF D+ K V+ D
Sbjct: 258 MKYKGKEVVLTPEAEEVAGFYGAMLETDHAQDATFNKNFFTDFLK--------VLADYP- 308
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
R + KK+IK + +A+ ++Y C +DG KEK+GNFR+EPPG
Sbjct: 309 ---------------PRNGVRHGAKKEIKKQKDALEEKYTSCVLDGRKEKVGNFRVEPPG 353
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG+HPK G LK RV+ EDI IN P P +WK+V HD VTWLA+W EN
Sbjct: 354 LFRGRGDHPKKGALKLRVRPEDITINIGAGVPTPVPNMPGQWKQVVHDKTVTWLANWVEN 413
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
V G KY+ L S LKG+ D K+E AR+L K +++IR +Y AD KSK M RQRA A+
Sbjct: 414 VNGNYKYVFLAAGSLLKGQSDMAKFEKARELKKHVDRIRSDYTADLKSKVMADRQRATAM 473
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
YFID++ALRAGNEK ED+ADTVGCCSLR EH+ L P + FDFLGKDSIRYYN
Sbjct: 474 YFIDRVALRAGNEKGEDEADTVGCCSLRCEHVTLEA-----PNFIIFDFLGKDSIRYYNR 528
Query: 301 VPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
V V+++VFKN++LF +NK SD+LFDR+NTS+LNKHL+ M+GLTAKVFRTYNASIT QQ
Sbjct: 529 VTVDQQVFKNIRLFKDNKDDSDNLFDRVNTSLLNKHLASYMKGLTAKVFRTYNASITFQQ 588
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
QL+E + EK+ AYN ANR VA+LCNHQRS PK+H++SM ++E++
Sbjct: 589 QLDEGTPEMATVQEKLNAYNHANRMVAILCNHQRSAPKTHEQSMEKMRERL 639
>gi|451849741|gb|EMD63044.1| hypothetical protein COCSADRAFT_336991 [Cochliobolus sativus
ND90Pr]
Length = 903
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/424 (51%), Positives = 288/424 (67%), Gaps = 16/424 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWR----KSMTEKER----AVI 55
G + L +DAEE+ATFY M+ + + FN NF +D+ K+ K++ I
Sbjct: 300 GVPVTLHKDAEEVATFYGSMLNSTHNVENPTFNKNFFEDFTAILDKTGHGKDKNGNTVKI 359
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
KCDF+ + +F + ++KA+S EKK +K E EA Y C DG K+K+GNFR
Sbjct: 360 KKFEKCDFKPIFEWFDSERAKKKALSAAEKKALKAEREAAEAPYMYCMWDGRKQKVGNFR 419
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRGEHPK G++K+RV E I IN + +KVP PP GH+WKEV+HD++ TWLA
Sbjct: 420 VEPPGLFRGRGEHPKTGRVKKRVMPEQITINIGEKAKVPEPPAGHRWKEVKHDHEGTWLA 479
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ D SK M RQ
Sbjct: 480 MWQENINGAYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYRKDLNSKMMADRQ 539
Query: 236 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSI 295
RA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ +HI L P V FDFLGKDSI
Sbjct: 540 RATAIYLIDQFALRAGNEKGEDEADTVGCCSLKFQHITLR-----PPETVIFDFLGKDSI 594
Query: 296 RYYNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
R+Y+EV V+ +VFKNL+LF E K DD+FDRL TS LNKHL+ M GLTAKVFRTYNA
Sbjct: 595 RFYDEVKVDPQVFKNLKLFKKEPKTTGDDIFDRLTTSALNKHLTSYMPGLTAKVFRTYNA 654
Query: 355 SITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNK 414
S T+ + L E M P + EK+ AYN ANR VA+LCNH+R+V +H S+ + EKI+
Sbjct: 655 SYTMARLLKE-MKPTGTIQEKVKAYNDANREVAILCNHKRTVAANHANSIEKMTEKINGL 713
Query: 415 RKQV 418
R QV
Sbjct: 714 RYQV 717
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 79/103 (76%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ D SK M
Sbjct: 476 TWLAMWQENINGAYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYRKDLNSKMM 535
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ +HI L
Sbjct: 536 ADRQRATAIYLIDQFALRAGNEKGEDEADTVGCCSLKFQHITL 578
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 426 KDAKKAGESKAMT-DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
K K E K T +K + + +L +++ +++Q DKE NK +ALGTSK+NY+DPR++V
Sbjct: 809 KTGKVEAEGKGPTIEKLEGNIDKLHQRIENMKIQMEDKEGNKEVALGTSKINYIDPRLTV 868
Query: 485 TW 486
+
Sbjct: 869 VF 870
>gi|401886620|gb|EJT50647.1| topoisomerase I [Trichosporon asahii var. asahii CBS 2479]
Length = 870
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 223/415 (53%), Positives = 281/415 (67%), Gaps = 10/415 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE---KERAVITD 57
M+ GK + L ++EE+A F+ MIE ++ F NF +D+++ E E IT
Sbjct: 271 MKYDGKPVTLPPESEEVAGFFGAMIETDHAKDPVFRANFFRDFKEMCEEYPPAEGVKITS 330
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
L KCDF ++ YF + E++KA+SKEEKK IK+ + + + Y IDG KEK GNFR E
Sbjct: 331 LEKCDFSDIYQYFESEREKKKALSKEEKKAIKEAKDKLEEPYMYALIDGRKEKTGNFRAE 390
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PP LFRGRGEHP+ G LK R++ EDI+IN KD+ +P P KWK ++HDN VTWLA W
Sbjct: 391 PPSLFRGRGEHPRKGTLKHRLRPEDIVINIGKDAPIPVPNIPGKWKGIQHDNTVTWLAHW 450
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
ENV GQ KY+ L+ +S KG+ D K+E AR+L K ++KIR Y D KSK M RQRA
Sbjct: 451 KENVNGQSKYVFLSAASSWKGQSDRAKFEKARELIKHVDKIRRIYNTDMKSKVMADRQRA 510
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
ALYFID+LALRAGNEK ED+ADTVGCCSLR EH+ L P V FDFLGKDS+R+
Sbjct: 511 TALYFIDRLALRAGNEKGEDEADTVGCCSLRYEHVTLEP-----PNKVIFDFLGKDSMRF 565
Query: 298 YNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASI 356
+ EV VE +VFKN++LF E KK DD+FDRL T+ LNK L + M+GLTAKVFRTYNAS
Sbjct: 566 HQEVEVEPQVFKNIKLFKAEPKKTGDDIFDRLTTTGLNKWLQDQMKGLTAKVFRTYNASW 625
Query: 357 TLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
T Q+QL + + AEKI AYN ANR VAVLCNHQ+SV K+ +S +KI
Sbjct: 626 TFQEQLKNTPK-NGTVAEKIAAYNTANRDVAVLCNHQKSVSKNFAESFAKANDKI 679
>gi|452001558|gb|EMD94017.1| hypothetical protein COCHEDRAFT_1222620 [Cochliobolus
heterostrophus C5]
Length = 903
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 220/424 (51%), Positives = 288/424 (67%), Gaps = 16/424 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWR----KSMTEKER----AVI 55
G + L +DAEE+ATFY M+ + + FN NF +D+ K+ K++ I
Sbjct: 300 GVPVTLHKDAEEVATFYGSMLNSTHNVENPTFNKNFFEDFTAILDKTGHGKDKNGNTVKI 359
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
KCDF+ + +F + ++KA+S EKK +K E EA Y C DG K+K+GNFR
Sbjct: 360 KKFEKCDFKPIFEWFDSERAKKKALSAAEKKALKAEREAAEAPYMYCMWDGRKQKVGNFR 419
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRGEHPK G++K+RV E I IN + +KVP PP GH+WKEV+HD++ TWLA
Sbjct: 420 VEPPGLFRGRGEHPKTGRVKKRVMPEQITINIGEKAKVPEPPAGHRWKEVKHDHEGTWLA 479
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ D SK M RQ
Sbjct: 480 MWQENINGAYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYRKDLNSKMMADRQ 539
Query: 236 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSI 295
RA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ +HI L P V FDFLGKDSI
Sbjct: 540 RATAIYLIDQFALRAGNEKGEDEADTVGCCSLKFQHITLR-----PPETVIFDFLGKDSI 594
Query: 296 RYYNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
R+Y+EV V+ +VFKNL+LF E K DD+FDRL TS LNKHL+ M GLTAKVFRTYNA
Sbjct: 595 RFYDEVKVDPQVFKNLKLFKKEPKTTGDDIFDRLTTSALNKHLTSYMPGLTAKVFRTYNA 654
Query: 355 SITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNK 414
S T+ + L E M P + EK+ AYN ANR VA+LCNH+R+V +H S+ + EKI+
Sbjct: 655 SYTMARLLKE-MKPTGTIQEKVKAYNDANREVAILCNHKRTVAANHANSIEKMTEKINGL 713
Query: 415 RKQV 418
R QV
Sbjct: 714 RYQV 717
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 79/103 (76%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ D SK M
Sbjct: 476 TWLAMWQENINGAYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYRKDLNSKMM 535
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ +HI L
Sbjct: 536 ADRQRATAIYLIDQFALRAGNEKGEDEADTVGCCSLKFQHITL 578
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 426 KDAKKAGESKAMT-DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
K K E K T +K + + +L +++ +++Q DKE NK +ALGTSK+NY+DPR++V
Sbjct: 809 KTGKVEAEGKGPTIEKLEGNIDKLHQRIENMKIQMEDKEGNKEVALGTSKINYIDPRLTV 868
Query: 485 TW 486
+
Sbjct: 869 VF 870
>gi|255727468|ref|XP_002548660.1| DNA topoisomerase I [Candida tropicalis MYA-3404]
gi|240134584|gb|EER34139.1| DNA topoisomerase I [Candida tropicalis MYA-3404]
Length = 777
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 208/410 (50%), Positives = 289/410 (70%), Gaps = 9/410 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKER--AVITDLSKCD 62
GK + L +AEE+A FY M+E ++ F NF D+ + + E I + K D
Sbjct: 183 GKPVNLPPEAEEVAGFYGAMLETDHAKNPVFQKNFFNDFLEVLKECGGCGVEIKEFEKMD 242
Query: 63 FRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLF 122
F KM+AY+ Q+ EE+KA+S++EKK++K+E + + Y C ++G KE +GNFRIEPPGLF
Sbjct: 243 FSKMYAYYEQQREEKKALSRDEKKRLKEERDKFEEPYKTCYLNGRKELVGNFRIEPPGLF 302
Query: 123 RGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQ 182
RGRG HPK GKLKRRV E + +N KD+KVP PP GH+W E+RHDN+VTWLA W EN+
Sbjct: 303 RGRGAHPKTGKLKRRVAPEQVTLNLGKDAKVPEPPAGHQWGEIRHDNEVTWLAMWKENIS 362
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
KY+ +S +KG+ D++K+ETAR+L +++IR++Y KS++M+ RQ A A+Y
Sbjct: 363 DSTKYVRFANNSSIKGQSDFKKFETARRLRNHVDEIRKDYTKMLKSEKMQDRQMATAMYL 422
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
ID ALRAG EK +D+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y EV
Sbjct: 423 IDVFALRAGGEKGDDEADTVGCCSLRYEHVTLK-----PPNKVVFDFLGKDSIRFYQEVE 477
Query: 303 VEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
V+K+VFKNL++F + K+ DDLFDR+N S++NK L M+GLTAKVFRTYNAS T+Q Q
Sbjct: 478 VDKQVFKNLRIFKKAPKQPGDDLFDRINPSLVNKQLQNYMKGLTAKVFRTYNASKTMQDQ 537
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
++ L++ + + AEK++ +N ANR VA+LCNHQR+V K+H ++ + +K+
Sbjct: 538 ID-LIENEGTVAEKVVKFNAANRTVAILCNHQRTVSKNHSNTVQKINDKL 586
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 75/104 (72%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ KY+ +S +KG+ D++K+ETAR+L +++IR++Y KS++
Sbjct: 351 VTWLAMWKENISDSTKYVRFANNSSIKGQSDFKKFETARRLRNHVDEIRKDYTKMLKSEK 410
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A+Y ID ALRAG EK +D+ADTVGCCSLR EH+ L
Sbjct: 411 MQDRQMATAMYLIDVFALRAGGEKGDDEADTVGCCSLRYEHVTL 454
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 408 KEKISNKRKQVKDAERALKDAKKAGES----KAMTDKKKTALGRLKEQLLKLEVQETDKE 463
K+ I K ++ + E+ K +K G+ A +K K + L+ ++L Q DKE
Sbjct: 662 KKDIKEKMDKITELEKEYKQERKTGKPVVPKNATVEKLKGQIETLENRILTTSFQLKDKE 721
Query: 464 ENKTIALGTSKLNYLDPRISVTW 486
+N ++LGTSK+NY+DPR++V +
Sbjct: 722 DNSEVSLGTSKMNYIDPRLTVMF 744
>gi|406606704|emb|CCH41928.1| DNA topoisomerase I [Wickerhamomyces ciferrii]
Length = 773
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/410 (52%), Positives = 271/410 (66%), Gaps = 9/410 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKE--RAVITDLSKCD 62
GK + L AEE+A F+ ++E ++ F NF D+ + E I + KCD
Sbjct: 178 GKPVDLPLAAEEVAGFFGALLETDHGKNPVFQKNFFHDFLDVLKESGGCNVQIKEFEKCD 237
Query: 63 FRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLF 122
F KMH YF K EE+K++ EKK+++ E E Y +C ++G KE++GNFR+EPPGLF
Sbjct: 238 FTKMHQYFELKKEEKKSIPASEKKRLRQEKEEEEAPYKICLLNGRKEQVGNFRVEPPGLF 297
Query: 123 RGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQ 182
RGRG HP+ GKLKRRV EDII+N KD+ VPP P GHKW EVRHDN V+WLA W ENV
Sbjct: 298 RGRGAHPRTGKLKRRVFPEDIILNLGKDAPVPPAPEGHKWAEVRHDNTVSWLAMWRENVL 357
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
VKY+ +S LKG D++K+E AR+L I K+RE+Y+ + K M RQ A A Y
Sbjct: 358 NAVKYVRFAANSSLKGMSDYKKFEKARELKYHIAKVREDYEGMLRDKLMLNRQIATATYL 417
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
ID ALRAG EK ED+ADTVGCCSLR EHI L P V FDFLGKDSIR+Y EV
Sbjct: 418 IDIFALRAGGEKSEDEADTVGCCSLRYEHITL-----SPPTTVVFDFLGKDSIRFYQEVQ 472
Query: 303 VEKRVFKNLQLFVENKKG-SDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
V +VFKNL+LF + KG D LFDRL+ S+LNK M GLTAKVFRTYNAS T+Q Q
Sbjct: 473 VAPQVFKNLKLFKKAPKGPGDQLFDRLDPSILNKRFHSYMPGLTAKVFRTYNASKTMQDQ 532
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
L+ L+ + + AEK+ +N ANR VA+LCNHQR+V K HD +M + +K+
Sbjct: 533 LD-LIPNEGTPAEKVTKFNAANRTVAILCNHQRTVAKGHDAAMQKIHDKL 581
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 71/105 (67%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V+WLA W ENV VKY+ +S LKG D++K+E AR+L I K+RE+Y+ + K
Sbjct: 345 TVSWLAMWRENVLNAVKYVRFAANSSLKGMSDYKKFEKARELKYHIAKVREDYEGMLRDK 404
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M RQ A A Y ID ALRAG EK ED+ADTVGCCSLR EHI L
Sbjct: 405 LMLNRQIATATYLIDIFALRAGGEKSEDEADTVGCCSLRYEHITL 449
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 416 KQVKDAERALKDAKKAGE-----SKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIAL 470
K+V + E+ K K+G+ + +K + + +L++++ +Q DKE+N ++L
Sbjct: 665 KKVDELEKEYKKEAKSGKPEVKPANVTVEKLEAQVEKLEQRITNTSIQMKDKEDNSEVSL 724
Query: 471 GTSKLNYLDPRISVTW 486
TSK+NY+DPR+SV +
Sbjct: 725 STSKINYIDPRLSVVF 740
>gi|299751938|ref|XP_001830595.2| topoisomerase I [Coprinopsis cinerea okayama7#130]
gi|298409603|gb|EAU91226.2| topoisomerase I [Coprinopsis cinerea okayama7#130]
Length = 853
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 245/549 (44%), Positives = 336/549 (61%), Gaps = 65/549 (11%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSM---TEKERAVITD 57
M+ GK++ LS +AEE+A FY ++E ++ FN NF D++K + + IT
Sbjct: 281 MKYNGKDVDLSIEAEEVAGFYGALLETDHAKDATFNKNFFTDFKKVLEKYPPRCGTKITT 340
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
CDFR M YF + +RKAM+ EEKK K + + + ++Y C +DG KEK+GNFRIE
Sbjct: 341 FELCDFRPMFEYFEAEKAKRKAMTNEEKKAAKKKKDELEEKYKTCVMDGRKEKVGNFRIE 400
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRGEHPK G LK+RV EDI IN K++K+P P KWK+V HDN VTWLA+W
Sbjct: 401 PPGLFRGRGEHPKKGSLKKRVYPEDITINIGKEAKIPVPNIPGKWKKVIHDNTVTWLATW 460
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
TEN+ KY+ L S+LKG+ D QK+E AR+L I KIR +Y D ++K M RQRA
Sbjct: 461 TENINNSHKYVFLAAGSRLKGQSDMQKFEKARELKDHIEKIRADYTEDLRNKVMAHRQRA 520
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
A+YFIDKLALRAGNEK ED+ADTVGCCSLR EH+ L P + FDFLGKDSIRY
Sbjct: 521 TAMYFIDKLALRAGNEKGEDEADTVGCCSLRCEHVTLR-----PPNEIVFDFLGKDSIRY 575
Query: 298 YNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
+ EVPV+ +VFKN+++F E K+ D+LFDR+ T+ LNKHL+ M+GLTAKVFRTYNAS T
Sbjct: 576 FKEVPVDAQVFKNIRIFKEGKELEDNLFDRVTTAGLNKHLTSYMKGLTAKVFRTYNASST 635
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAV-----------AVLCNHQRSVPKS------- 399
Q+ L+E + + EKI AYN+ANR + VL + + K+
Sbjct: 636 FQRLLDEEDLTNATIQEKINAYNKANRMLRSLKYDRMKLRHVLVTQEPKMKKNKKYTQEE 695
Query: 400 ----------HDKSM----------------------GNLKEKISNKRKQVKDAERALKD 427
H++S+ G K+K S +++++ E +
Sbjct: 696 SDIDDDWIEKHEESLKEKEIEKAEKKFEKENEKLEAEGKDKQKKSVLKERIEAIEEEFER 755
Query: 428 -AKKAGESKAM------TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDP 480
A++ G KA T+K + + +L +++ ++Q D++E K +ALGTSK+NYLDP
Sbjct: 756 LAQERGTGKATLKRERPTEKLEEMIEKLDDRIKTFKLQMIDRDEGKEVALGTSKINYLDP 815
Query: 481 RISVTWLAS 489
RI+V W ++
Sbjct: 816 RITVAWASA 824
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 79/105 (75%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTEN+ KY+ L S+LKG+ D QK+E AR+L I KIR +Y D ++K
Sbjct: 453 TVTWLATWTENINNSHKYVFLAAGSRLKGQSDMQKFEKARELKDHIEKIRADYTEDLRNK 512
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M RQRA A+YFIDKLALRAGNEK ED+ADTVGCCSLR EH+ L
Sbjct: 513 VMAHRQRATAMYFIDKLALRAGNEKGEDEADTVGCCSLRCEHVTL 557
>gi|448534130|ref|XP_003870756.1| Top1 DNA topoisomerase I [Candida orthopsilosis Co 90-125]
gi|380355111|emb|CCG24628.1| Top1 DNA topoisomerase I [Candida orthopsilosis]
Length = 805
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/417 (53%), Positives = 296/417 (70%), Gaps = 13/417 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE--KERAVITDLSKCD 62
GK + L +AEE+A F+ M+E ++ F NF +D+++ + E ITD +K D
Sbjct: 211 GKPVNLPIEAEEVAGFFGAMVETDHAKNPVFQNNFFQDFQQVLKECGGCGVEITDFNKLD 270
Query: 63 FRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLF 122
F KMHAYF +K EE+KA+SK+EKK++K+E E I + Y C ++G +E +GNFRIEPPGLF
Sbjct: 271 FSKMHAYFEKKREEKKALSKDEKKRLKEEKEKIEEPYKTCLLNGRRELVGNFRIEPPGLF 330
Query: 123 RGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQ 182
RGRG HPK GKLKRRV E + +N S +KVP PPPGH W EVRHDN+VTWLA W EN+
Sbjct: 331 RGRGAHPKTGKLKRRVYPEQVTLNLSAHAKVPDPPPGHNWAEVRHDNEVTWLAMWKENIA 390
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
KY+ +S +KG+ D++K+ETAR+L K ++ IR++Y KS++M+ RQ A A+Y
Sbjct: 391 DSFKYVRFAANSSVKGQSDFKKFETARELRKYVDAIRKDYTKMLKSEKMQDRQMATAMYL 450
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
ID ALRAG EK ED+ADTVGCCSLR EHI L P V FDFLGKDSIR+Y EV
Sbjct: 451 IDVYALRAGGEKGEDEADTVGCCSLRFEHITLK-----PPNTVIFDFLGKDSIRFYQEVE 505
Query: 303 VEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
V K+VFKNL++F E K+ D+LFDR+N S++NK L M+GLTAKVFRTYNAS T+Q Q
Sbjct: 506 VSKQVFKNLRIFKKEPKQPGDNLFDRINPSMVNKQLQNYMKGLTAKVFRTYNASKTMQDQ 565
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
L+ L+ + + AEK++ +N ANR VA+LCNHQR+V K+H GN +KIS+K K++
Sbjct: 566 LD-LISNEGTVAEKVVKFNAANRTVAILCNHQRTVSKNH----GNSIQKISDKLKEL 617
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/104 (54%), Positives = 75/104 (72%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ KY+ +S +KG+ D++K+ETAR+L K ++ IR++Y KS++
Sbjct: 379 VTWLAMWKENIADSFKYVRFAANSSVKGQSDFKKFETARELRKYVDAIRKDYTKMLKSEK 438
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A+Y ID ALRAG EK ED+ADTVGCCSLR EHI L
Sbjct: 439 MQDRQMATAMYLIDVYALRAGGEKGEDEADTVGCCSLRFEHITL 482
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 42/68 (61%)
Query: 419 KDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
K+ ++ LK K +K +K + L+ +++ +Q DKE+N ++LGTSK+NY+
Sbjct: 705 KEYKKELKTGKPELPAKMTLEKCYQQIETLENRIVATSLQLKDKEDNSEVSLGTSKMNYI 764
Query: 479 DPRISVTW 486
DPR++V +
Sbjct: 765 DPRLTVMF 772
>gi|334683315|dbj|BAK32959.1| topoisomerase I [Ophiorrhiza plumbea]
Length = 920
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 237/492 (48%), Positives = 317/492 (64%), Gaps = 21/492 (4%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
+ L+ + EE+AT +A M++ +Y K F NF DW+K + + I +L CDF ++
Sbjct: 411 ITLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKMLGKNH--TIQNLEDCDFGPIY 468
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGE 127
+ Q+ E++K M+ EEKK +K+E ++Y +DG KEK+GNFR+EPPGLFRGRGE
Sbjct: 469 EWHQQEKEKKKQMTTEEKKALKEERLQQEEKYMWVIVDGVKEKVGNFRVEPPGLFRGRGE 528
Query: 128 HPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENV-QGQV 185
HPK+GKLK+R++ DI IN KD+ +P P PG +WKEVR+DN VTWLA W + + Q +
Sbjct: 529 HPKVGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWNDPINQKER 588
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-KSKEMRIRQRAVALYFID 244
KY+ L SS LKG+ D +KYE AR L I+ IR Y D+ +K+ +Q AVA Y ID
Sbjct: 589 KYVFLGASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTNNKDPMKKQIAVATYLID 648
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD+D+ADTVGCC+L+VE+++ P ++ DF+GKDSIRY NEV VE
Sbjct: 649 KLALRAGNEKDDDEADTVGCCTLKVENVE-----PVPPNILKIDFIGKDSIRYQNEVQVE 703
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
VFK +Q F K+GS DLFDRL+TS LN HL ELM GLTAKVFRTYNASITL L++
Sbjct: 704 PAVFKAIQQFRSGKEGSADLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSK 763
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
AEK+ Y AN+ VA++CNHQR+V KSH M L EKI + +++ +
Sbjct: 764 ETK-GGKVAEKVGVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKTD 822
Query: 425 LKDAKKA-GESKAMTDKKKTALG------RLKEQLLKLEVQETD---KEENKTIALGTSK 474
L AKK SK + K L ++ + K+E E D KE+ K +AL TSK
Sbjct: 823 LSRAKKGKPPSKGADGEPKRNLNPEALERKIAQTNAKIEKMEGDKKTKEDLKAVALSTSK 882
Query: 475 LNYLDPRISVTW 486
++YL PRI+V W
Sbjct: 883 ISYLGPRITVAW 894
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 76/106 (71%), Gaps = 2/106 (1%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-K 540
+VTWLA W + + Q + KY+ L SS LKG+ D +KYE AR L I+ IR Y D+
Sbjct: 572 TVTWLAYWNDPINQKERKYVFLGASSTLKGQSDKEKYEKARLLKDYIHGIRAAYTKDFTN 631
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
+K+ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 632 NKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 677
>gi|393245001|gb|EJD52512.1| hypothetical protein AURDEDRAFT_111181 [Auricularia delicata
TFB-10046 SS5]
Length = 908
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/412 (54%), Positives = 283/412 (68%), Gaps = 6/412 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWR---KSMTEKERAVITDLSKC 61
GK + L ++EE+A F+ +++ ++ F NF KD+ K ++ IT +KC
Sbjct: 308 GKPVDLPPESEEVALFFGQLLGSDHANDTTFQKNFFKDFTHVLKVHPPRDGTRITSFNKC 367
Query: 62 DFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGL 121
DFR+M + + +K MS EEKK K+ + + Y C +DG KEKIGNFRIEPPGL
Sbjct: 368 DFRQMFEFHDAERIRKKNMSGEEKKAAKEAKDKLEAPYTHCMLDGRKEKIGNFRIEPPGL 427
Query: 122 FRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENV 181
FRGRGEHPK G LK RV EDI IN + KVP P KW +V HDN VTWLA+W ENV
Sbjct: 428 FRGRGEHPKKGCLKTRVYPEDITINIGEGVKVPEPSIPGKWHKVIHDNTVTWLATWKENV 487
Query: 182 QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALY 241
G KY+ L+ S LKG+ D K+E AR+LAK ++ IRE+Y+ D KSK M RQRA A+Y
Sbjct: 488 NGNTKYVFLSAGSSLKGQSDMNKFEKARELAKYVDTIREDYERDLKSKVMADRQRATAMY 547
Query: 242 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE-KDGKPYVVCFDFLGKDSIRYYNE 300
FID+LALRAGNEK ED+ADTVGCCSLR EH+ L + DGK YVV FDFLGKDSIRYYN
Sbjct: 548 FIDRLALRAGNEKGEDEADTVGCCSLRCEHVTLERDTTDGKEYVV-FDFLGKDSIRYYNR 606
Query: 301 VPVEKRVFKNLQLFVENKKGSDD-LFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V ++VFKN+++F + K +D LFDR+ TS LNKHL M+GLTAKVFRTYNAS+T+Q
Sbjct: 607 VEVTQQVFKNIRIFKGDSKTDEDALFDRVTTSSLNKHLQSYMKGLTAKVFRTYNASVTMQ 666
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+ L+ + + AEKI AY ANR VA+LCNHQR+ PK+HD +M L EK+
Sbjct: 667 RLLDAQDLGNATIAEKIAAYTDANREVAILCNHQRAAPKTHDATMEKLGEKL 718
>gi|302306949|ref|NP_983396.2| ACL008Cp [Ashbya gossypii ATCC 10895]
gi|299788764|gb|AAS51220.2| ACL008Cp [Ashbya gossypii ATCC 10895]
gi|374106602|gb|AEY95511.1| FACL008Cp [Ashbya gossypii FDAG1]
Length = 732
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 262/632 (41%), Positives = 365/632 (57%), Gaps = 50/632 (7%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLS 59
GGK ++L +AEE+A F+A +++ ++ F NF +D+ + + A I + S
Sbjct: 134 GGKAVELPAEAEEVAGFFAALLQSDHAQNPVFQKNFFEDFLSVLNKHGGARNGIDIQEFS 193
Query: 60 KCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPP 119
KCDF KMHAY Q+ +++K +S EKK +K E + + Y C +DG KE++GNF+IEPP
Sbjct: 194 KCDFSKMHAYIQQQKDQKKQLSSHEKKLLKQEKDKQEEPYKFCYLDGRKEQVGNFKIEPP 253
Query: 120 GLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTE 179
LFRGRG HPK GKLKRRVQ ED+++N KD+ +P PP GHKW E+RHDN V WL W E
Sbjct: 254 DLFRGRGAHPKTGKLKRRVQPEDVVLNLDKDAPIPEPPAGHKWGEIRHDNTVQWLCMWRE 313
Query: 180 NVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVA 239
N+ KY+ L +S LKG D++K+E +R+L I+ IR +Y+ + KSK M RQ AVA
Sbjct: 314 NISNSFKYVRLAANSSLKGMSDFKKFEKSRELKNYIDIIRADYRKNLKSKVMLDRQIAVA 373
Query: 240 LYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYN 299
Y ID ALRAG EK ED+ADTVGCCSLR EHI L P V FDFLGKDSIRYY
Sbjct: 374 TYLIDVFALRAGGEKSEDEADTVGCCSLRYEHISLK-----PPNTVVFDFLGKDSIRYYQ 428
Query: 300 EVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
EV V+K+VFKNL +F K+ LFDRL+ S+LNKHL M GLTAKVFRTYNAS T+
Sbjct: 429 EVEVDKQVFKNLSIFKRPPKEPGHQLFDRLDPSILNKHLQNYMPGLTAKVFRTYNASKTM 488
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
Q QL+ L+ + S EK++ YN ANRAVA+LCNHQR+V +SH +SM EKI + Q
Sbjct: 489 QDQLD-LIPNEGSVTEKMVRYNAANRAVAILCNHQRTVGRSHAQSMQKATEKIEEYQWQK 547
Query: 419 KDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLE--VQETDKEE-NKTIALGTSKL 475
++A+ ++ E KA K KE+ + + V E ++E+ K A K
Sbjct: 548 IRYKKAILQLDES-ELKANPKFFKEINDLTKEEQMSIHKRVLEREREKYQKKFARENEKR 606
Query: 476 NY-LDPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIREN 534
+ + + + L SW +V+ G++ ++ ET K + E
Sbjct: 607 KFEGEELLPESQLESWLADVEEM-------------GKEYVEELETGLVTVKPTLQSVEK 653
Query: 535 YQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLH------ 588
+A E RIR ++ + KD++ TV + ++ +I
Sbjct: 654 LKAQIDKLEQRIRTTSIQM-------------KDKEDNSTVALSTSKISYIDPRLSVAFC 700
Query: 589 --EEKDEKKIYNKTQRAKFRWAIDMATADFVF 618
+ +K++ KT R KF+WAI+ A ++ F
Sbjct: 701 KKYDVPLEKVFTKTLREKFKWAIESADENWRF 732
>gi|403169465|ref|XP_003328910.2| hypothetical protein PGTG_10211 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167970|gb|EFP84491.2| hypothetical protein PGTG_10211 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 973
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/418 (52%), Positives = 282/418 (67%), Gaps = 12/418 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE---KERAVITD 57
M+ GK + L ++EE+A FY M+ ++ K F NF DW + + E ++ I +
Sbjct: 315 MKYNGKSVDLPPESEEVAFFYGSMLNSDHVKKAVFRQNFFHDWLEVLKEHPPRDGTKIKE 374
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
SKCDF M Y + E++KAMSKEEK K+K E +A+ +Y C +DG EK+GNFR+E
Sbjct: 375 FSKCDFTPMFDYASDEREKKKAMSKEEKMKMKKERDALEAKYKTCILDGRVEKVGNFRVE 434
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRGEHPK GKLK+RV+AEDI INC DSK P PPPGHKW ++ H + +WLA W
Sbjct: 435 PPGLFRGRGEHPKTGKLKKRVRAEDIHINCGADSKFPEPPPGHKWADITHSEKASWLAYW 494
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
EN+ G KY+ L S L G+ D +K+E ARKL I+ IR +YQ + + M +RQRA
Sbjct: 495 KENINGNFKYVFLAAGSSLGGQSDLKKFEKARKLKDIIDDIRNDYQTKLRDRMMAVRQRA 554
Query: 238 VALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIR 296
A+Y ID+ ALRAGNEK ++ADTVGCCSLR E+I L P V DFLGKDSIR
Sbjct: 555 TAMYLIDRFALRAGNEKQAGEEADTVGCCSLRAENITLE-----PPCTVTLDFLGKDSIR 609
Query: 297 YYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASI 356
++N+ V++ VFKNL++F + D++FDRL T LNKHLS M GLTAKVFRTYNASI
Sbjct: 610 FFNKFEVDEAVFKNLKIFTKGSSPRDEIFDRLTTGTLNKHLSSYMSGLTAKVFRTYNASI 669
Query: 357 TLQQQLNELM---DPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
T ++QL + M D EAEK++AYN+ANR VAVLCNHQ++V KSH SM ++I
Sbjct: 670 TFERQLAKNMLELGEDAKEAEKMVAYNKANRQVAVLCNHQKAVSKSHGASMEKCADRI 727
>gi|260947406|ref|XP_002618000.1| hypothetical protein CLUG_01459 [Clavispora lusitaniae ATCC 42720]
gi|238847872|gb|EEQ37336.1| hypothetical protein CLUG_01459 [Clavispora lusitaniae ATCC 42720]
Length = 764
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/410 (51%), Positives = 279/410 (68%), Gaps = 9/410 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKE--RAVITDLSKCD 62
K + L AEE+A F+A M+E ++ F NF +D+ + + E IT+ KCD
Sbjct: 170 SKPVNLPLAAEEVAGFFAEMLETDHAKNPVFQKNFFEDFLQVLRENGGCDVDITEFDKCD 229
Query: 63 FRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLF 122
F KMHA+FV+ EE+K MSK EK ++K E EA+ + Y C ++G +E +GNF++EPP LF
Sbjct: 230 FSKMHAHFVKVREEKKNMSKAEKLRLKQEREALEEPYRTCLLNGRRENVGNFKVEPPSLF 289
Query: 123 RGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQ 182
RGRG HPK GKLK+RV EDI +N ++ +PP P GHKW E+RHD V WLA W EN+
Sbjct: 290 RGRGAHPKTGKLKKRVYPEDITLNLGIEAPIPPAPEGHKWGEIRHDKSVVWLAMWKENIS 349
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
KY+ L +S +KG D +K+ETAR+L I +IR++Y+ K M+ RQ A A Y
Sbjct: 350 DSFKYVKLAANSSIKGISDMKKFETARRLKDHIERIRDDYKKMLKDPFMQNRQIATATYL 409
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
ID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y EV
Sbjct: 410 IDVFALRAGGEKGEDEADTVGCCSLRYEHVTLR-----PPNTVIFDFLGKDSIRFYQEVE 464
Query: 303 VEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
V+++VFKNL++F E K+ DDLFDR+ + LNKHL M+GLTAKVFRTYNAS T+Q Q
Sbjct: 465 VDRQVFKNLRIFKKEPKQPGDDLFDRITPATLNKHLQAYMKGLTAKVFRTYNASKTMQDQ 524
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
++ L+ + + AEK++ YN ANR VA+LCNHQR+V K+H S+G ++EKI
Sbjct: 525 MD-LIPNEGTVAEKVMKYNAANRTVAILCNHQRTVSKAHQNSVGKIQEKI 573
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 70/105 (66%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SV WLA W EN+ KY+ L +S +KG D +K+ETAR+L I +IR++Y+ K
Sbjct: 337 SVVWLAMWKENISDSFKYVKLAANSSIKGISDMKKFETARRLKDHIERIRDDYKKMLKDP 396
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A Y ID ALRAG EK ED+ADTVGCCSLR EH+ L
Sbjct: 397 FMQNRQIATATYLIDVFALRAGGEKGEDEADTVGCCSLRYEHVTL 441
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 391 NHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESK----AMTDKKKTALG 446
N +R++ K + +L+EK+S ++K +E + ++GE + A +K K +
Sbjct: 636 NEKRAMEKQELLTEEDLQEKLS----KIKASEEEYRHEIESGEVEVTKGASVEKLKVQIE 691
Query: 447 RLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+++ ++L Q DKE+N ++LGTSKLNY+DPR++V +
Sbjct: 692 KIENRILNTNFQLKDKEDNSEVSLGTSKLNYIDPRLTVMF 731
>gi|406698572|gb|EKD01807.1| succinate dehydrogenase flavoprotein subunit precursor
[Trichosporon asahii var. asahii CBS 8904]
Length = 1549
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/415 (53%), Positives = 281/415 (67%), Gaps = 10/415 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE---KERAVITD 57
M+ GK + L ++EE+A F+ MIE ++ F NF +D+++ E E IT
Sbjct: 271 MKYDGKPVTLPPESEEVAGFFGAMIETDHAKDPVFRANFFRDFKEMCEEYPPAEGVKITS 330
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
L KCDF ++ YF + E++KA+SKEEKK IK+ + + + Y IDG KEK GNFR E
Sbjct: 331 LEKCDFSDIYQYFESEREKKKALSKEEKKAIKEAKDKLEEPYMYALIDGRKEKTGNFRAE 390
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PP LFRGRGEHP+ G LK R++ EDI+IN KD+ +P P KWK ++HDN VTWLA W
Sbjct: 391 PPSLFRGRGEHPRKGTLKHRLRPEDIVINIGKDAPIPVPNIPGKWKGIQHDNTVTWLAHW 450
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
ENV GQ KY+ L+ +S KG+ D K+E AR+L K ++KIR Y D KSK M RQRA
Sbjct: 451 KENVNGQSKYVFLSAASSWKGQSDRAKFEKARELIKHVDKIRRIYNTDMKSKVMADRQRA 510
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
ALYFID+LALRAGNEK ED+ADTVGCCSLR EH+ L P V FDFLGKDS+R+
Sbjct: 511 TALYFIDRLALRAGNEKGEDEADTVGCCSLRYEHVTLE-----PPNKVIFDFLGKDSMRF 565
Query: 298 YNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASI 356
+ EV VE +VFKN++LF E KK DD+FDRL T+ LNK L + M+GLTAKVFRTYNAS
Sbjct: 566 HQEVEVEPQVFKNIKLFKAEPKKTGDDIFDRLTTTGLNKWLQDQMKGLTAKVFRTYNASW 625
Query: 357 TLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
T Q+QL + + AEKI AYN ANR VAVLCNHQ+SV K+ +S +KI
Sbjct: 626 TFQEQLKNTPK-NGTVAEKIAAYNTANRDVAVLCNHQKSVSKNFAESFAKANDKI 679
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 91/136 (66%), Gaps = 2/136 (1%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W ENV GQ KY+ L+ +S KG+ D K+E AR+L K ++KIR Y D KSK
Sbjct: 443 TVTWLAHWKENVNGQSKYVFLSAASSWKGQSDRAKFEKARELIKHVDKIRRIYNTDMKSK 502
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKIYNKTQR 602
M RQRA ALYFID+LALRAGNEK ED+ADTVGCCSLR EH+ L E K I++ +
Sbjct: 503 VMADRQRATALYFIDRLALRAGNEKGEDEADTVGCCSLRYEHVTL--EPPNKVIFDFLGK 560
Query: 603 AKFRWAIDMATADFVF 618
R+ ++ VF
Sbjct: 561 DSMRFHQEVEVEPQVF 576
>gi|396471361|ref|XP_003838854.1| similar to DNA topoisomerase 1 [Leptosphaeria maculans JN3]
gi|312215423|emb|CBX95375.1| similar to DNA topoisomerase 1 [Leptosphaeria maculans JN3]
Length = 1025
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/424 (50%), Positives = 284/424 (66%), Gaps = 16/424 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSMTEKERAV--------I 55
G + L +DAEE+ATFY M+ + + FN NF +D+ + + I
Sbjct: 422 GVPLTLHKDAEEVATFYGSMLNSTHNVENPTFNKNFFEDFTAILNKTGHGKDKDGKTIKI 481
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
T KCDF+ + +F + ++KA+ EKK +K E +A Y C DG K+K+GNFR
Sbjct: 482 TKFEKCDFKPIFEWFDSERAKKKALPAAEKKALKAEKDAAEAPYMYCIWDGRKQKVGNFR 541
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRGEHPK G++K+RV E I IN +++KVP PP GH+WKEV+HD++ TWLA
Sbjct: 542 VEPPGLFRGRGEHPKTGRVKKRVAPEQITINIGENAKVPEPPAGHRWKEVKHDHEGTWLA 601
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ D SK M RQ
Sbjct: 602 MWQENINGAYKYVMLAANSDVKGQSDYKKFEKARELKKHIDRIRKDYRKDLNSKMMADRQ 661
Query: 236 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSI 295
RA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ +HI L P V FDFLGKDSI
Sbjct: 662 RATAIYLIDQFALRAGNEKGEDEADTVGCCSLKFQHITLKP-----PETVIFDFLGKDSI 716
Query: 296 RYYNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
R+Y+EV V+ +VFKNL+LF E K DD+FDRL TS LNKHL+ M GLTAKVFRTYNA
Sbjct: 717 RFYDEVKVDPQVFKNLKLFKKEPKTTGDDIFDRLTTSALNKHLNSYMTGLTAKVFRTYNA 776
Query: 355 SITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNK 414
S T+ + L E M S E++ AYN ANR VA+LCNH+R+V SH S+ + EKI+
Sbjct: 777 SYTMARLLKE-MKATGSIQERVKAYNDANREVAILCNHKRTVAASHATSIEKMNEKINGL 835
Query: 415 RKQV 418
R Q
Sbjct: 836 RYQA 839
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 79/103 (76%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ D SK M
Sbjct: 598 TWLAMWQENINGAYKYVMLAANSDVKGQSDYKKFEKARELKKHIDRIRKDYRKDLNSKMM 657
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ +HI L
Sbjct: 658 ADRQRATAIYLIDQFALRAGNEKGEDEADTVGCCSLKFQHITL 700
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 426 KDAKKAGESKAMTDKKKTA-LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
K K E K T +K A + ++ +++ +++Q DKE NK +ALGTSK+NY+DPR++V
Sbjct: 931 KTGKVEAEGKGPTVEKLEANVEKIMQRIETMKIQMEDKEGNKEVALGTSKINYIDPRLTV 990
Query: 485 TW 486
+
Sbjct: 991 VF 992
>gi|225446979|ref|XP_002265386.1| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
Length = 883
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/499 (49%), Positives = 316/499 (63%), Gaps = 22/499 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M G+ + L+ + EE+AT +A M + +Y TK F NFM DWR + + VI
Sbjct: 362 MLYNGRPVDLTPEQEEVATMFAVMKDTDYATKPRFIENFMNDWRVRLGKNH--VIKKFEL 419
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF ++ + ++ E++K M+ EEKK +K+E +Y +DG KEK+GNFR+EPPG
Sbjct: 420 CDFTPIYEWHEKEKEKKKQMTTEEKKALKEEKLKQEDKYMWAVVDGVKEKVGNFRVEPPG 479
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTE 179
LFRGRGEHPKMGKLK+R+ DI IN K++ VP P PG +WKEVRHDN VTWLA W +
Sbjct: 480 LFRGRGEHPKMGKLKKRICPSDITINIGKEAPVPECPIPGERWKEVRHDNTVTWLAFWND 539
Query: 180 NVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + KY+ L SS LKG+ D +KYE AR L I IR Y D+ +K+ RQ AV
Sbjct: 540 PINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTNKDTMKRQIAV 599
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y IDKLALRAGNEKD+D+ADTVGCC+L+VE++ L P + FDFLGKDSIRY+
Sbjct: 600 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVALVP-----PNKLEFDFLGKDSIRYF 654
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
N V VE V+K + F K G DDLFD+L+TS LN HL ELM GLTAKVFRTYNASITL
Sbjct: 655 NTVEVELPVYKAIGQFKTGKSGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITL 714
Query: 359 QQQLN-ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQ 417
+ LN E D EKI+ Y AN+ VA++CNHQRSV KSHD M L EK+ +
Sbjct: 715 DEMLNREARGGD--AMEKIVIYQHANKEVAIICNHQRSVSKSHDVQMSRLSEKMRELQGV 772
Query: 418 VKDAERALKDAKKAGESKAMTDKK----------KTALGRLKEQLLKLEVQETDKEENKT 467
+ + + L AKK +D K + + + ++ K+E KE+ KT
Sbjct: 773 LDELKTDLARAKKGKPPLKDSDGKPKKNMTPEVLERKIAQTNTKIEKMERDMKTKEDLKT 832
Query: 468 IALGTSKLNYLDPRISVTW 486
+ALGTSK+NYLDPRISV W
Sbjct: 833 VALGTSKINYLDPRISVAW 851
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L SS LKG+ D +KYE AR L I IR Y D+ +
Sbjct: 530 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTN 589
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
K+ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE++ L
Sbjct: 590 KDTMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVAL 635
>gi|395145928|gb|AFN53404.1| DNA topoisomerase 1, partial [Leptothorax cf. muscorum BBB-2012]
Length = 267
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/253 (81%), Positives = 234/253 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA ITDL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAKITDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++HAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EIHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RVQ ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVQPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLAKSI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAKSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLAKSI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAKSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDED 570
EMRIRQRAVALYFIDKLALRAGNEKDED
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|297739132|emb|CBI28783.3| unnamed protein product [Vitis vinifera]
Length = 724
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 246/499 (49%), Positives = 316/499 (63%), Gaps = 22/499 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M G+ + L+ + EE+AT +A M + +Y TK F NFM DWR + + VI
Sbjct: 203 MLYNGRPVDLTPEQEEVATMFAVMKDTDYATKPRFIENFMNDWRVRLGKNH--VIKKFEL 260
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF ++ + ++ E++K M+ EEKK +K+E +Y +DG KEK+GNFR+EPPG
Sbjct: 261 CDFTPIYEWHEKEKEKKKQMTTEEKKALKEEKLKQEDKYMWAVVDGVKEKVGNFRVEPPG 320
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTE 179
LFRGRGEHPKMGKLK+R+ DI IN K++ VP P PG +WKEVRHDN VTWLA W +
Sbjct: 321 LFRGRGEHPKMGKLKKRICPSDITINIGKEAPVPECPIPGERWKEVRHDNTVTWLAFWND 380
Query: 180 NVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + KY+ L SS LKG+ D +KYE AR L I IR Y D+ +K+ RQ AV
Sbjct: 381 PINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTNKDTMKRQIAV 440
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y IDKLALRAGNEKD+D+ADTVGCC+L+VE++ L P + FDFLGKDSIRY+
Sbjct: 441 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVALVP-----PNKLEFDFLGKDSIRYF 495
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
N V VE V+K + F K G DDLFD+L+TS LN HL ELM GLTAKVFRTYNASITL
Sbjct: 496 NTVEVELPVYKAIGQFKTGKSGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITL 555
Query: 359 QQQLN-ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQ 417
+ LN E D EKI+ Y AN+ VA++CNHQRSV KSHD M L EK+ +
Sbjct: 556 DEMLNREARGGD--AMEKIVIYQHANKEVAIICNHQRSVSKSHDVQMSRLSEKMRELQGV 613
Query: 418 VKDAERALKDAKKAGESKAMTDKK----------KTALGRLKEQLLKLEVQETDKEENKT 467
+ + + L AKK +D K + + + ++ K+E KE+ KT
Sbjct: 614 LDELKTDLARAKKGKPPLKDSDGKPKKNMTPEVLERKIAQTNTKIEKMERDMKTKEDLKT 673
Query: 468 IALGTSKLNYLDPRISVTW 486
+ALGTSK+NYLDPRISV W
Sbjct: 674 VALGTSKINYLDPRISVAW 692
Score = 118 bits (296), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L SS LKG+ D +KYE AR L I IR Y D+ +
Sbjct: 371 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTN 430
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
K+ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE++ L
Sbjct: 431 KDTMKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVAL 476
>gi|189203219|ref|XP_001937945.1| DNA topoisomerase 1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187985044|gb|EDU50532.1| DNA topoisomerase 1 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 905
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/424 (50%), Positives = 285/424 (67%), Gaps = 16/424 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWRKSMTEKERAV--------I 55
G + L +DAEE+ATFY M+ + + FN NF +D+ + + I
Sbjct: 302 GVPVTLHKDAEEVATFYGSMLNSTHNVENPTFNKNFFEDFTAILDKTGHGKDKNGNTIKI 361
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
KCDF+ + +F + ++KA+S EKK +K E EA +Y C DG K+K+GNFR
Sbjct: 362 KKFEKCDFKPIFEWFDAERAKKKALSAAEKKALKAEKEAAEADYMYCLWDGRKQKVGNFR 421
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRGEHPK G++K+RV E I IN +++KVP PP GH+WKE++HD++ TWLA
Sbjct: 422 VEPPGLFRGRGEHPKTGRVKKRVMPEQITINIGENAKVPEPPAGHRWKEIKHDHEGTWLA 481
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ D SK M RQ
Sbjct: 482 MWQENINGAYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYRKDLNSKMMADRQ 541
Query: 236 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSI 295
RA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ +HI L P V FDFLGKDSI
Sbjct: 542 RATAIYLIDQFALRAGNEKGEDEADTVGCCSLKFQHITLR-----PPETVIFDFLGKDSI 596
Query: 296 RYYNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
R+Y+EV V+ +VFKNL+LF E K DD+FDRL TS LNKHL+ M GLTAKVFRTYNA
Sbjct: 597 RFYDEVKVDPQVFKNLKLFKKEPKTTGDDIFDRLTTSALNKHLTSYMPGLTAKVFRTYNA 656
Query: 355 SITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNK 414
S T+ + L E M + EK+ AYN ANR VA+LCNH+R+V SH S+ + E+I+
Sbjct: 657 SYTMARLLKE-MKATGTVQEKVKAYNDANREVAILCNHKRTVAASHATSIEKMNERINGL 715
Query: 415 RKQV 418
R Q
Sbjct: 716 RYQA 719
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 79/103 (76%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ D SK M
Sbjct: 478 TWLAMWQENINGAYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYRKDLNSKMM 537
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ +HI L
Sbjct: 538 ADRQRATAIYLIDQFALRAGNEKGEDEADTVGCCSLKFQHITL 580
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 426 KDAKKAGESKAMTDKKKTA-LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
K K E K T +K A + ++ +++ +++Q DKE NK +ALGTSK+NY+DPR++V
Sbjct: 811 KTGKIEAEGKGPTVEKLEANVEKIVQRIENMKIQMEDKEGNKEVALGTSKINYIDPRLTV 870
Query: 485 TW 486
+
Sbjct: 871 VF 872
>gi|403215856|emb|CCK70354.1| hypothetical protein KNAG_0E00860 [Kazachstania naganishii CBS
8797]
Length = 762
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/411 (52%), Positives = 280/411 (68%), Gaps = 11/411 (2%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLSKC 61
K + L AEE+A FYA ++ ++ F NF +D+ + + E A+ I KC
Sbjct: 166 KPVDLPLPAEEVAGFYAALLGTQHAENTIFQKNFFQDFLQILRENGGALNGINIVLFDKC 225
Query: 62 DFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGL 121
DF K+H Y QK EE++ +S +E+K+++ + Y C +DG +E++GNFR+EPP L
Sbjct: 226 DFSKIHGYLEQKKEEKRQLSAQERKQLRQAKAEEEEPYKFCELDGRREQVGNFRVEPPDL 285
Query: 122 FRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENV 181
FRGRG HPK GKLKRRV EDI++N SKD+ +PP P GH W E+RHDN V WLA W EN+
Sbjct: 286 FRGRGAHPKTGKLKRRVYPEDIMLNLSKDAPIPPAPEGHHWGEIRHDNAVQWLAMWRENI 345
Query: 182 QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALY 241
G KY+ L +S LKG+ D++K+E AR+L K I+ IR +Y+ + KSK M RQ+AVALY
Sbjct: 346 FGSFKYVRLAANSSLKGQSDFKKFEKARELKKYIDSIRRDYRKNLKSKVMLERQKAVALY 405
Query: 242 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEV 301
ID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y EV
Sbjct: 406 LIDVFALRAGGEKSEDEADTVGCCSLRYEHVTLR-----PPKTVIFDFLGKDSIRFYQEV 460
Query: 302 PVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
V+K+VFKNL +F K+ LFDRL+ S+LNKHL M GLTAKVFRTYNAS T+Q
Sbjct: 461 EVDKQVFKNLTIFKRPPKQPGHQLFDRLDPSLLNKHLQNYMPGLTAKVFRTYNASKTMQD 520
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
QL+ L+ + + AEK+L YN ANRAVA+LCNHQR+V KSH +S+ ++I
Sbjct: 521 QLD-LIPNEGTVAEKLLRYNAANRAVAILCNHQRTVTKSHAQSVEKAVQRI 570
>gi|320582441|gb|EFW96658.1| DNA topoisomerase, putative [Ogataea parapolymorpha DL-1]
Length = 761
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 263/636 (41%), Positives = 378/636 (59%), Gaps = 56/636 (8%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEK---ERAVITDLSKCD 62
K + L AEE+A F+A ++E ++ F NF D+ + + E A IT+ KCD
Sbjct: 159 KPVSLPPAAEEVAGFFAALLESDHAKNPTFQKNFFADFLEVLKENGGCPDAEITEFEKCD 218
Query: 63 FRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLF 122
F +M YF ++ EE+KA+S +EKK+IK E E + ++Y C ++G KE++GNFR+EPPGLF
Sbjct: 219 FSQMFEYFQKQKEEKKAISPQEKKRIKQEKEKMEEKYKFCLLNGRKEQVGNFRVEPPGLF 278
Query: 123 RGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQ 182
RGRG HPK GKLK+RVQ EDI +N SKD+ +PPPP GH+W E++HDN V WLA W ENV
Sbjct: 279 RGRGAHPKTGKLKKRVQPEDITLNLSKDAPIPPPPEGHQWGEIKHDNTVAWLAMWRENVL 338
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
G VKY+ +S LKG D++K+E AR+L I+ IR++Y+A KS+ M RQ A A Y
Sbjct: 339 GSVKYVRFAQNSSLKGMSDFKKFEKARELKNCIDAIRKDYRAKLKSELMMDRQLATATYL 398
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
ID ALRAG EK ED+ADTVGCCSLR EHI L P V FDFLGKDSIR+Y EV
Sbjct: 399 IDVFALRAGGEKSEDEADTVGCCSLRYEHIFLK-----PPNTVVFDFLGKDSIRFYQEVE 453
Query: 303 VEKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
V+ +VFKNL++F ++ KK D+LFDR++ SVLNK+ + GLTAKVFRTYNAS T+Q Q
Sbjct: 454 VDPQVFKNLRIFKKSPKKPGDNLFDRIDPSVLNKYFQSYLPGLTAKVFRTYNASKTMQDQ 513
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNK--RKQV- 418
++ L+ + + EK++ +N ANR VA+LCNHQR+V K+H+ + + EKI RK V
Sbjct: 514 ID-LIKNEGTVNEKVVKFNAANRTVAILCNHQRTVSKNHEAGVQKINEKIEEMIWRKIVL 572
Query: 419 ------KDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKE-ENKTIALG 471
+D KD K E + D K ++ E++L+ E ++ +K E + + LG
Sbjct: 573 KRMMLQQDKSLRKKDFKYFEE---IDDMSKEEEQKIIERVLQKEKEKIEKRYERELLKLG 629
Query: 472 TSKLNYLDPRISVTWLASWTENVQGQVKYIMLNPSSKLK-GEKDWQKYETARKLAKSINK 530
+L + LA+ ++ + K + ++ K G + + +T KL + + K
Sbjct: 630 YEELTKDEKAKKKDELAADHKSRLEKHKELEKTYKNEFKTGTYEIKPTQTVEKLQQQVEK 689
Query: 531 IRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ---- 586
I E RI+ ++ L KD++ V + ++ +I
Sbjct: 690 I-----------ETRIKNTSLQL-------------KDKEDNSQVALNTSKINYIDPRLT 725
Query: 587 -LHEEKDE---KKIYNKTQRAKFRWAIDMATADFVF 618
+ +K E +K++ KT R KF WAI+ A ++ F
Sbjct: 726 VMFSKKFEVPIEKLFTKTLREKFAWAIESADENWRF 761
>gi|349581160|dbj|GAA26318.1| K7_Top1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 769
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/405 (52%), Positives = 276/405 (68%), Gaps = 11/405 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLSK 60
GK + L AEE+A F+A ++E ++ F NF D+ + + E + I + S+
Sbjct: 172 GKPVDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSR 231
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KM YF + E++K ++ +EKK+I+ E E ++Y C +DG +E++GNF++EPP
Sbjct: 232 CDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPD 291
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV EDI++N SKD+ VPP P GHKW E+RHDN V WLA W EN
Sbjct: 292 LFRGRGAHPKTGKLKRRVNPEDIVLNLSKDAPVPPAPEGHKWGEIRHDNTVQWLAMWREN 351
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ L +S LKG+ D++K+E AR+L I+ IR +Y + KSK M RQ+AVA+
Sbjct: 352 IFNSFKYVRLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAI 411
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y E
Sbjct: 412 YLIDVFALRAGGEKSEDEADTVGCCSLRYEHVTLK-----PPNTVIFDFLGKDSIRFYQE 466
Query: 301 VPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+K+VFKNL +F K+ LFDRL+ S+LNK+L M GLTAKVFRTYNAS T+Q
Sbjct: 467 VEVDKQVFKNLTIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQ 526
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSM 404
QL+ L+ S AEKIL YN ANR VA+LCNHQR+V K H +++
Sbjct: 527 DQLD-LIPNKGSVAEKILKYNAANRTVAILCNHQRTVTKGHAQTV 570
>gi|6324568|ref|NP_014637.1| DNA topoisomerase 1 [Saccharomyces cerevisiae S288c]
gi|135993|sp|P04786.2|TOP1_YEAST RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I; AltName: Full=Maintenance of killer protein 1
gi|1419771|emb|CAA99005.1| TOP1 [Saccharomyces cerevisiae]
gi|151945624|gb|EDN63865.1| topoisomerase I [Saccharomyces cerevisiae YJM789]
gi|207341303|gb|EDZ69397.1| YOL006Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|285814884|tpg|DAA10777.1| TPA: DNA topoisomerase 1 [Saccharomyces cerevisiae S288c]
gi|365763239|gb|EHN04769.1| Top1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296327|gb|EIW07429.1| Top1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 769
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/405 (52%), Positives = 276/405 (68%), Gaps = 11/405 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLSK 60
GK + L AEE+A F+A ++E ++ F NF D+ + + E + I + S+
Sbjct: 172 GKPVDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSR 231
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KM YF + E++K ++ +EKK+I+ E E ++Y C +DG +E++GNF++EPP
Sbjct: 232 CDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPD 291
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV EDI++N SKD+ VPP P GHKW E+RHDN V WLA W EN
Sbjct: 292 LFRGRGAHPKTGKLKRRVNPEDIVLNLSKDAPVPPAPEGHKWGEIRHDNTVQWLAMWREN 351
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ L +S LKG+ D++K+E AR+L I+ IR +Y + KSK M RQ+AVA+
Sbjct: 352 IFNSFKYVRLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAI 411
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y E
Sbjct: 412 YLIDVFALRAGGEKSEDEADTVGCCSLRYEHVTLK-----PPNTVIFDFLGKDSIRFYQE 466
Query: 301 VPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+K+VFKNL +F K+ LFDRL+ S+LNK+L M GLTAKVFRTYNAS T+Q
Sbjct: 467 VEVDKQVFKNLTIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQ 526
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSM 404
QL+ L+ S AEKIL YN ANR VA+LCNHQR+V K H +++
Sbjct: 527 DQLD-LIPNKGSVAEKILKYNAANRTVAILCNHQRTVTKGHAQTV 570
>gi|256273990|gb|EEU08906.1| Top1p [Saccharomyces cerevisiae JAY291]
Length = 745
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/405 (52%), Positives = 276/405 (68%), Gaps = 11/405 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLSK 60
GK + L AEE+A F+A ++E ++ F NF D+ + + E + I + S+
Sbjct: 148 GKPVDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSR 207
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KM YF + E++K ++ +EKK+I+ E E ++Y C +DG +E++GNF++EPP
Sbjct: 208 CDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPD 267
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV EDI++N SKD+ VPP P GHKW E+RHDN V WLA W EN
Sbjct: 268 LFRGRGAHPKTGKLKRRVNPEDIVLNLSKDAPVPPAPEGHKWGEIRHDNTVQWLAMWREN 327
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ L +S LKG+ D++K+E AR+L I+ IR +Y + KSK M RQ+AVA+
Sbjct: 328 IFNSFKYVRLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAI 387
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y E
Sbjct: 388 YLIDVFALRAGGEKSEDEADTVGCCSLRYEHVTLK-----PPNTVIFDFLGKDSIRFYQE 442
Query: 301 VPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+K+VFKNL +F K+ LFDRL+ S+LNK+L M GLTAKVFRTYNAS T+Q
Sbjct: 443 VEVDKQVFKNLTIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQ 502
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSM 404
QL+ L+ S AEKIL YN ANR VA+LCNHQR+V K H +++
Sbjct: 503 DQLD-LIPNKGSVAEKILKYNAANRTVAILCNHQRTVTKGHAQTV 546
>gi|190407336|gb|EDV10603.1| DNA topoisomerase I [Saccharomyces cerevisiae RM11-1a]
gi|259149480|emb|CAY86284.1| Top1p [Saccharomyces cerevisiae EC1118]
Length = 769
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/405 (52%), Positives = 276/405 (68%), Gaps = 11/405 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLSK 60
GK + L AEE+A F+A ++E ++ F NF D+ + + E + I + S+
Sbjct: 172 GKPVDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSR 231
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KM YF + E++K ++ +EKK+I+ E E ++Y C +DG +E++GNF++EPP
Sbjct: 232 CDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPD 291
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV EDI++N SKD+ VPP P GHKW E+RHDN V WLA W EN
Sbjct: 292 LFRGRGAHPKTGKLKRRVNPEDIVLNLSKDAPVPPAPEGHKWGEIRHDNTVQWLAMWREN 351
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ L +S LKG+ D++K+E AR+L I+ IR +Y + KSK M RQ+AVA+
Sbjct: 352 IFNSFKYVRLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKLMLERQKAVAI 411
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y E
Sbjct: 412 YLIDVFALRAGGEKSEDEADTVGCCSLRYEHVTLK-----PPNTVIFDFLGKDSIRFYQE 466
Query: 301 VPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+K+VFKNL +F K+ LFDRL+ S+LNK+L M GLTAKVFRTYNAS T+Q
Sbjct: 467 VEVDKQVFKNLTIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQ 526
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSM 404
QL+ L+ S AEKIL YN ANR VA+LCNHQR+V K H +++
Sbjct: 527 DQLD-LIPNKGSVAEKILKYNAANRTVAILCNHQRTVTKGHAQTV 570
>gi|328858386|gb|EGG07499.1| hypothetical protein MELLADRAFT_116253 [Melampsora larici-populina
98AG31]
Length = 937
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/419 (51%), Positives = 285/419 (68%), Gaps = 15/419 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMT---EKERAVITD 57
M+ GK + L ++EE+A F+ M+ ++ K F NF D+ + + ++R IT
Sbjct: 336 MKYEGKSVDLPPESEEVAGFFGAMLNSDHCQKPTFCQNFFNDFLEVLALHPPRDRTKITS 395
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
KCDF + Y+ + E +K++SKEEK K+K E + + K++ C +DG +EK+GNFR+E
Sbjct: 396 FEKCDFTPIFEYYDAERERKKSLSKEEKTKLKKEKDELEKQFQFCLLDGRQEKVGNFRVE 455
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PP LFRGRGEHPK G+LK+R+ AEDI INCSKD+ +P PP GH+W V H ++ +WLA W
Sbjct: 456 PPSLFRGRGEHPKTGRLKKRIYAEDITINCSKDAPIPIPPAGHQWGSVVHLDKASWLAMW 515
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
EN+ G KY+ L P S LKG+ D +K+E AR+L I +IR +Y+ + + K M RQRA
Sbjct: 516 KENINGAFKYVFLAPGSSLKGQSDMKKFEKARQLKLHIERIRADYRQELEDKVMATRQRA 575
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
A+Y ID LALRAGNEK +D+ADTVGCCSLR EH+ L P V FDFLGKDSIR+
Sbjct: 576 TAMYLIDVLALRAGNEKGDDEADTVGCCSLRYEHLTLE-----PPSTVTFDFLGKDSIRF 630
Query: 298 YNEVPVEKRVFKNLQLFVENKKGSDDL-FDRLNTSVLNKHLSELMEGLTAKVFRTYNASI 356
+N V V++ VFKNL++F + K D+ FDRL TS LNKHLS+ M GLTAKVFRTYNAS
Sbjct: 631 FNTVQVDEAVFKNLRIFKKEPKAIGDMIFDRLTTSSLNKHLSDYMPGLTAKVFRTYNASF 690
Query: 357 TLQQQL----NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
T +++L NEL P AEKI AYN+ANR VAVLCNHQ+SV K H+ SM EKI
Sbjct: 691 TFERELEKNMNELKVPTL--AEKIYAYNKANRQVAVLCNHQKSVSKGHETSMEKAYEKI 747
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/104 (55%), Positives = 74/104 (71%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
+WLA W EN+ G KY+ L P S LKG+ D +K+E AR+L I +IR +Y+ + + K
Sbjct: 509 ASWLAMWKENINGAFKYVFLAPGSSLKGQSDMKKFEKARQLKLHIERIRADYRQELEDKV 568
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M RQRA A+Y ID LALRAGNEK +D+ADTVGCCSLR EH+ L
Sbjct: 569 MATRQRATAMYLIDVLALRAGNEKGDDEADTVGCCSLRYEHLTL 612
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 461 DKEENKTIALGTSKLNYLDPRISVTW 486
DK+E K +LGTSK+NY+DPR++ W
Sbjct: 880 DKDEGKETSLGTSKMNYIDPRLTYAW 905
>gi|281202242|gb|EFA76447.1| DNA topoisomerase I [Polysphondylium pallidum PN500]
Length = 874
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 249/542 (45%), Positives = 329/542 (60%), Gaps = 64/542 (11%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ +KL+ + EE+ATFYA IE ++ KE F NF D+R ++ +++ + K DF
Sbjct: 305 GEPLKLTPEQEEVATFYANYIETDHVKKEIFRKNFFNDFRALLSSEQKKTVKTFDKLDFS 364
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H + ++ + RK ++EEKK+ K++ E I +G+ TIDGHK+KIGN+ IEPPGLF G
Sbjct: 365 RIHKFITERKDLRKNRTEEEKKQEKEDKEKIKAIHGIATIDGHKQKIGNYTIEPPGLFLG 424
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPK G LK R+ D+ IN K+ KVPP P GH WK+V HDN VTWLA W EN+
Sbjct: 425 RGEHPKTGMLKTRIYPSDVTINIGKNEKVPPSPIEGHNWKQVVHDNTVTWLAFWRENINN 484
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
KY+ L SSK+KG D +K+ETAR L + I+ IR+ Y++ KS+++ RQ AVALY I
Sbjct: 485 GFKYVWLGSSSKIKGLADMKKFETARGLKECIDDIRKGYRSKLKSEDLEERQLAVALYLI 544
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALR GNEK EDQADTVGCCSLRVEHI +E KP + DFLGKDS+RY+N V +
Sbjct: 545 DKLALRVGNEKGEDQADTVGCCSLRVEHIDFPKE---KPNTITLDFLGKDSMRYHNTVEI 601
Query: 304 EKRVFKNLQLF-----VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
+ V+K+L F + K SD+LFD+++ LN HL M+GL+AKVFRT+NASITL
Sbjct: 602 DATVYKHLFSFTKTEDKKKKSKSDNLFDQISVGKLNNHLKSQMDGLSAKVFRTFNASITL 661
Query: 359 QQQLNELMDPDFSEA-EKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKIS----- 412
QQ+L + M P EK L Y R NR VA+LCNHQR+ PK+H SM + +KI
Sbjct: 662 QQELAK-MPPSLKTVDEKYLFYTRCNREVAILCNHQRAAPKTHAASMEKIGDKIQELEDL 720
Query: 413 -------------------NKRKQVKDAERALKDAKKAGES--KAMTDKKKT-------- 443
+K KQ + ER K K+A E K+ DK KT
Sbjct: 721 HDLCAFELNKVNKEKGKKMSKEKQEEIKEREKKRLKEAKEKAIKSNKDKDKTDEDIKEEV 780
Query: 444 -------------------ALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
+ KEQ+ K E+ T K+E T+ALGTSK+NYLDPRI+
Sbjct: 781 ETKFERSRKFPESEDRLEDKRKKFKEQIKKQELLRTGKDETSTVALGTSKINYLDPRITS 840
Query: 485 TW 486
W
Sbjct: 841 AW 842
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/109 (60%), Positives = 81/109 (74%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W EN+ KY+ L SSK+KG D +K+ETAR L + I+ IR+ Y++ KS+
Sbjct: 471 TVTWLAFWRENINNGFKYVWLGSSSKIKGLADMKKFETARGLKECIDDIRKGYRSKLKSE 530
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEK 591
++ RQ AVALY IDKLALR GNEK EDQADTVGCCSLRVEHI +EK
Sbjct: 531 DLEERQLAVALYLIDKLALRVGNEKGEDQADTVGCCSLRVEHIDFPKEK 579
>gi|5119|emb|CAA29559.1| topoisomerase I [Schizosaccharomyces pombe]
Length = 812
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 222/409 (54%), Positives = 280/409 (68%), Gaps = 8/409 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE-KERAVITDLSKCDF 63
G + L +AEE+A FYA M+E ++ F NF +D+ K E I + SKCDF
Sbjct: 220 GNPVNLPPEAEEVAGFYAAMLETDHAKNPVFQDNFFRDFLKVCDECNFNHNIKEFSKCDF 279
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
+M +F QK EE+K+M KE+KK IK++ + ++Y C +DG KEK+GNFRIEPPGLFR
Sbjct: 280 TQMFHHFEQKREEKKSMPKEQKKAIKEKKDEEEEKYKWCILDGRKEKVGNFRIEPPGLFR 339
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPK G LKRRV E I IN + VP P PGH+W EV+HDN VTWLA+W EN+
Sbjct: 340 GRGSHPKTGSLKRRVYPEQITINIGEGVPVPEPLPGHQWAEVKHDNTVTWLATWHENINN 399
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
VKY+ L S LKG+ D +KYE +RKL I+ IR+ Y+ D K++ RQR A+Y I
Sbjct: 400 NVKYVFLAAGSSLKGQSDLKKYEKSRKLKDYIDDIRKGYRKDLKNELTVERQRGTAMYLI 459
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D ALRAGNEK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIRYYNEV V
Sbjct: 460 DVFALRAGNEKGEDEADTVGCCSLRYEHVTLKP-----PRTVVFDFLGKDSIRYYNEVEV 514
Query: 304 EKRVFKNLQLFVENKKGSDDL-FDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
+ +VFKNL++F K DL FDRL+T+ LNK+L+ LM+GL+AKVFRTYNAS T+ ++L
Sbjct: 515 DPQVFKNLKIFKRPPKKEGDLIFDRLSTNSLNKYLTSLMDGLSAKVFRTYNASYTMAEEL 574
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+ M + + A+KIL YNRANR VA+LCNHQRSV K+HD M E+I
Sbjct: 575 KK-MPKNLTLADKILFYNRANRTVAILCNHQRSVTKNHDVQMERFAERI 622
>gi|2642493|gb|AAC14193.1| DNA topoisomerase I [Physarum polycephalum]
Length = 1015
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 248/552 (44%), Positives = 333/552 (60%), Gaps = 75/552 (13%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + LS +AEE+ATFYA+ +E +Y KE FNTNF D+R +T +++ VI D SK DF
Sbjct: 437 GKPINLSPEAEEVATFYAKYLETDYPKKENFNTNFWSDFRTYLTPEQKKVIKDFSKADFT 496
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+H Y V++ E + + EEKK K E E + ++YG I+GH+++I N+ IE PGLF G
Sbjct: 497 HIHKYLVEQKELKANRTAEEKKAEKAEKEKLLQKYGFAMINGHRQRISNWAIERPGLFLG 556
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPK G +K+R++AEDI IN K VP PPPGHKW +V HD++V WLA W EN+
Sbjct: 557 RGAHPKTGLVKKRIEAEDITINIGKGVPVPEPPPGHKWCKVVHDDKVAWLAMWKENINNG 616
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+ L+ SS +KG D +K+E ARKL I KIR+ Y + S+E+ RQRA A+Y ID
Sbjct: 617 FKYVWLHASSAVKGRSDMKKFEVARKLKDHIEKIRKKYLKELGSEELEERQRATAIYLID 676
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
+LALR GNEKDED ADTVGCCSLRVEH+ L E P V DFLGKDS+RY+N V V+
Sbjct: 677 RLALRVGNEKDEDTADTVGCCSLRVEHVTLKE-----PASVTLDFLGKDSMRYHNTVDVD 731
Query: 305 KRVFKNLQLFV-------ENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
RVFKNL F+ KK +DLFD+L TS LNK+L ME L+AKVFRTYNAS+T
Sbjct: 732 PRVFKNLSEFMYKGGNKKAPKKPENDLFDQLTTSSLNKYLKGFMENLSAKVFRTYNASLT 791
Query: 358 LQQQLNELMDPDF--SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKIS--- 412
L+++L ++ + + EK+L YNR NR VA+LCNHQRS+ K+H ++MG + EKI+
Sbjct: 792 LEKELAKMPESLIKATADEKVLFYNRCNREVAILCNHQRSLSKTHTETMGKIDEKIAEFK 851
Query: 413 --------------NKRKQVKDAERALKDAKKAGESKAMTDKK----------------- 441
K+ + D+E KKA KA K+
Sbjct: 852 KEKLQQQIAYLKGKGKKPVLSDSESDEDTPKKATPKKATPKKETKSSDEATPNKKRKKDD 911
Query: 442 ---------------------------KTALGRLKEQLLKLEVQETDKEENKTIALGTSK 474
K A+ R+ + K +++T+K+E K++AL TSK
Sbjct: 912 DEEEADDFKETPKKKVKRALPDSVEKCKAAIERVDTSINKWNIKKTEKDELKSVALTTSK 971
Query: 475 LNYLDPRISVTW 486
+NY+DPRI+ W
Sbjct: 972 INYIDPRITAAW 983
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 75/106 (70%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
V WLA W EN+ KY+ L+ SS +KG D +K+E ARKL I KIR+ Y + S+E
Sbjct: 603 VAWLAMWKENINNGFKYVWLHASSAVKGRSDMKKFEVARKLKDHIEKIRKKYLKELGSEE 662
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHE 589
+ RQRA A+Y ID+LALR GNEKDED ADTVGCCSLRVEH+ L E
Sbjct: 663 LEERQRATAIYLIDRLALRVGNEKDEDTADTVGCCSLRVEHVTLKE 708
>gi|168041703|ref|XP_001773330.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675372|gb|EDQ61868.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 632
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 238/498 (47%), Positives = 315/498 (63%), Gaps = 21/498 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M GK + L+ EEIAT +A M+E +Y KE F NF DW+ + + VI
Sbjct: 112 MLYDGKPVDLTPAQEEIATMFAVMLETDYAKKERFIKNFWDDWKPYLGKNH--VIKKFEL 169
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF + + ++ E +K+MS EEKK++K+E A+ ++Y +DG KEK+GNFR+EPPG
Sbjct: 170 CDFTPIFDWHAREKERKKSMSTEEKKRLKEEKLAVEEKYMWAVVDGVKEKVGNFRVEPPG 229
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTE 179
LFRGRG+HPKMGKLK R+ DI+IN KD+ VP P PG +WKE+RHDN VTWLA W +
Sbjct: 230 LFRGRGDHPKMGKLKTRILPHDIVINIGKDAAVPECPIPGQRWKEIRHDNTVTWLAYWKD 289
Query: 180 NVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + KY+ L SS LKG+ D QKYE AR L I+ IR Y D+ S + +Q AV
Sbjct: 290 PINDKEFKYVFLAASSSLKGQSDMQKYEKARMLKDYIDDIRRTYTHDFSSSDPTKQQIAV 349
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y ID+LALRAGNEKDED+ADTVGCCSL+VEH+ L P + FDFLGKDSIRY+
Sbjct: 350 ATYLIDRLALRAGNEKDEDEADTVGCCSLKVEHVTLVA-----PKSLQFDFLGKDSIRYF 404
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
N V V++RV+K + F + KK DDLF+RL+T+ LN HL +M LTAKVFRTYNASITL
Sbjct: 405 NTVEVDERVYKAIGQFKKGKKEGDDLFERLDTTKLNLHLKGIMPSLTAKVFRTYNASITL 464
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSM----GNLKEKISNK 414
L + + E I Y RAN+ VA+LCNHQRSV K H M G ++E
Sbjct: 465 DNLLQDTTGE--TTIEIIADYQRANKQVAILCNHQRSVSKGHSAQMERLEGKMQELEEQL 522
Query: 415 RKQVKDAERALKDAKKAGESKAMTDKKKTA------LGRLKEQLLKLEVQETDKEENKTI 468
+ D +RA K +S+ + +T + K+++ K+ + K++ KT+
Sbjct: 523 EELETDLDRAKKGKPPLKDSEGKVKRNQTPEALEKKIAATKQKIDKMRLDMRVKDDLKTV 582
Query: 469 ALGTSKLNYLDPRISVTW 486
ALGTSK+NY+DPRI+V W
Sbjct: 583 ALGTSKINYMDPRITVAW 600
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L SS LKG+ D QKYE AR L I+ IR Y D+ S
Sbjct: 280 TVTWLAYWKDPINDKEFKYVFLAASSSLKGQSDMQKYEKARMLKDYIDDIRRTYTHDFSS 339
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+ +Q AVA Y ID+LALRAGNEKDED+ADTVGCCSL+VEH+ L
Sbjct: 340 SDPTKQQIAVATYLIDRLALRAGNEKDEDEADTVGCCSLKVEHVTL 385
>gi|334683319|dbj|BAK32961.1| topoisomerase I [Ophiorrhiza ridleyana]
Length = 926
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 233/492 (47%), Positives = 316/492 (64%), Gaps = 21/492 (4%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
+ L+ + EE+AT +A M++ +Y K F NF DW+K + + I +L CDF ++
Sbjct: 411 LTLTPEQEEVATMFAVMLDTDYMNKPRFKENFFSDWKKILGKNH--TIQNLEDCDFGPIY 468
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGE 127
+ Q+ E++K M+ EEKK +K+E ++Y +DG KEK+GNFR+EPPGLFRGRGE
Sbjct: 469 EWHQQEKEKKKQMTTEEKKALKEERLQQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGE 528
Query: 128 HPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQ-GQV 185
HPK+GKLK+R++ DI IN KD+ +P P PG +WKEVR+DN VTWLA W + V +
Sbjct: 529 HPKVGKLKKRIRPRDITINIGKDAPIPECPIPGERWKEVRNDNTVTWLAYWNDPVNIKEC 588
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-KSKEMRIRQRAVALYFID 244
KY+ L SS LKG+ +KYE AR L I+ IR Y + +K+ +Q AVA Y ID
Sbjct: 589 KYVFLAASSTLKGQSVKEKYEKARVLKDYIHGIRAAYTKGFTNNKDPMKKQIAVATYLID 648
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD+D+ADTVGCC+L+VE+++ P ++ DF+GKDSIRY NEV VE
Sbjct: 649 KLALRAGNEKDDDEADTVGCCTLKVENVE-----PVPPNILKIDFIGKDSIRYQNEVQVE 703
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
VFK +Q F K+GS+DLFDRL+TS LN HL ELM GLTAKVFRTYNASITL L++
Sbjct: 704 PAVFKAIQQFRSGKEGSEDLFDRLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSK 763
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
AEK+ Y AN+ VA++CNHQR+V KSH M L EKI + +++ +
Sbjct: 764 ETK-GGKIAEKVAVYQHANKEVAIICNHQRTVSKSHSAQMSRLNEKIDELKTALEELKTD 822
Query: 425 LKDAKKA--------GESKAMTDKKKT--ALGRLKEQLLKLEVQETDKEENKTIALGTSK 474
L AKK GE K + + + + ++ K+E + KE+ K +AL TSK
Sbjct: 823 LSRAKKGKPPSKDADGEPKRNLNPESLERKIAQTNAKIEKMERDKKTKEDLKAVALSTSK 882
Query: 475 LNYLDPRISVTW 486
++YLDPRI+V W
Sbjct: 883 ISYLDPRITVAW 894
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Query: 483 SVTWLASWTENVQ-GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW-K 540
+VTWLA W + V + KY+ L SS LKG+ +KYE AR L I+ IR Y +
Sbjct: 572 TVTWLAYWNDPVNIKECKYVFLAASSTLKGQSVKEKYEKARVLKDYIHGIRAAYTKGFTN 631
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
+K+ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 632 NKDPMKKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 677
>gi|395145920|gb|AFN53400.1| DNA topoisomerase 1, partial [Aphaenogaster occidentalis]
Length = 267
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/253 (82%), Positives = 232/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS+D EEIATFYARM++H+YTTK AFN NF DWR+ MTE ERA ITDLSKC+F+
Sbjct: 15 GKEMKLSEDTEEIATFYARMLDHDYTTKAAFNNNFFTDWREMMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+ KSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|401623691|gb|EJS41781.1| top1p [Saccharomyces arboricola H-6]
Length = 776
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/405 (52%), Positives = 276/405 (68%), Gaps = 11/405 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLSK 60
GK + L AEE+A F+A ++E ++ F NF D+ + + E + I + S+
Sbjct: 179 GKPIDLPLQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLNDIEIKEFSR 238
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KM YF + E++K ++ +EKK+I+ E E ++Y C +DG KE++GNF++EPP
Sbjct: 239 CDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRKEQVGNFKVEPPD 298
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV EDI++N SKD+ +PP P GHKW E+RHDN V WLA W EN
Sbjct: 299 LFRGRGAHPKTGKLKRRVNPEDIVLNLSKDAPIPPAPEGHKWGEIRHDNTVQWLAMWREN 358
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ L +S LKG+ D++K+E AR+L I+ IR +Y + KSK M RQ+AVA+
Sbjct: 359 IFNSFKYVRLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAI 418
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y E
Sbjct: 419 YLIDVFALRAGGEKSEDEADTVGCCSLRYEHVTLK-----PPNTVIFDFLGKDSIRFYQE 473
Query: 301 VPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+K+VFKNL +F K+ LFDRL+ S+LNK+L M GLTAKVFRTYNAS T+Q
Sbjct: 474 VEVDKQVFKNLTIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQ 533
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSM 404
QL+ L+ S AEK+L YN ANR VA+LCNHQR+V K H +++
Sbjct: 534 DQLD-LIPNKGSVAEKLLKYNAANRTVAILCNHQRTVTKGHAQTV 577
>gi|424513433|emb|CCO66055.1| DNA topoisomerase I [Bathycoccus prasinos]
Length = 850
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 223/484 (46%), Positives = 313/484 (64%), Gaps = 16/484 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK++ L EE+ATF+A M E +Y K F NFM +++ + + A +TD KC+F+
Sbjct: 335 GKDVHLEPHEEEVATFFAVMKETDYAFKPVFQQNFMDGFKRILKNGKNAHVTDFEKCNFQ 394
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
K++ + + + E+ KA + EEKK+IK + + ++Y T++G +E++GNFR+EPPGLFRG
Sbjct: 395 KIYDWDLARREKVKARTSEEKKQIKLDKDKAEEKYMWATMNGKREQVGNFRVEPPGLFRG 454
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG++KRR+Q EDIIIN KD+KVP P GH+WKEVRHD VTW+A W +++ +
Sbjct: 455 RGEHPKMGRIKRRIQPEDIIINIGKDAKVPEAPAGHRWKEVRHDQTVTWMAGWNDSINTK 514
Query: 185 V-KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
KY+ +S +K E D QK+E AR L + I KIR++Y+ + + Q AV Y +
Sbjct: 515 DWKYVQFGATSSVKSESDKQKFEKARTLHEHIGKIRDDYRKNMRKDNKETAQLAVTTYLV 574
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYV-VCFDFLGKDSIRYYNEVP 302
DKLALRAG EKDED ADTVG +LRV H++ +D PY + FDFLGKDSIRY+ E
Sbjct: 575 DKLALRAGGEKDEDLADTVGVTTLRVGHLKFMGPEDDHPYPKIEFDFLGKDSIRYHQEHA 634
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
+E+ + L+ F +NKK +D+FD+++ S +N HL LM GLT KVFRTYNASITL + L
Sbjct: 635 IERVAYDCLKRFCKNKKEDEDVFDKIDPSKVNSHLQTLMPGLTIKVFRTYNASITLYRLL 694
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
E P + Y+ AN+ VA+LCNHQ+ K H M L +K K++K+
Sbjct: 695 EETTKPKAAVPIMKSTYDEANKEVAILCNHQKGESKQHQAGMDKLNDKKKELEKEMKELR 754
Query: 423 RALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRI 482
+A K+ KK L LKE++ KL++Q KE KT++LGTSK+NYLDPRI
Sbjct: 755 KADKNHKK--------------LPSLKERIQKLKLQMETKESLKTVSLGTSKINYLDPRI 800
Query: 483 SVTW 486
++ W
Sbjct: 801 TIAW 804
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%), Gaps = 1/112 (0%)
Query: 483 SVTWLASWTENVQGQV-KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTW+A W +++ + KY+ +S +K E D QK+E AR L + I KIR++Y+ + +
Sbjct: 500 TVTWMAGWNDSINTKDWKYVQFGATSSVKSESDKQKFEKARTLHEHIGKIRDDYRKNMRK 559
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDE 593
Q AV Y +DKLALRAG EKDED ADTVG +LRV H++ +D+
Sbjct: 560 DNKETAQLAVTTYLVDKLALRAGGEKDEDLADTVGVTTLRVGHLKFMGPEDD 611
>gi|388579204|gb|EIM19531.1| putative DNA topoisomerase [Wallemia sebi CBS 633.66]
Length = 767
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/416 (50%), Positives = 288/416 (69%), Gaps = 11/416 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEK---ERAVITD 57
M+ GK ++LS +AEE+A FYA ++ ++ + FN NF D+ + + + I +
Sbjct: 167 MKYDGKNVELSLEAEEVAGFYAAVLGSDHAADQVFNKNFFNDFLDILRKHPPLDGTKIQE 226
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
KCDF+ + Y Q+ E++KAM+++EKK K++ E I K + C +DG KEK+GNFRIE
Sbjct: 227 FEKCDFQPIKDYLDQEKEKKKAMTRDEKKAAKEQREEIEKPFTHCLLDGRKEKVGNFRIE 286
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PP LFRGRG HP+ GKLK R++ E I IN + +KVP P G KW V+HDN VTWLA W
Sbjct: 287 PPSLFRGRGAHPRKGKLKLRIKPEQITINIGEGAKVPEAPSGRKWGSVQHDNTVTWLAMW 346
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
EN+ G KY+ L P S LKG+ D K+E AR+L + I +IRE+Y+AD +K M RQRA
Sbjct: 347 KENINGNYKYVYLAPGSTLKGQSDMSKFEKARELKQHIGRIREDYEADLNNKVMYDRQRA 406
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
A+Y +D+LALRAGNEK ED+ADTVGCCSLR EH+ L P +V FDFLGKDS+R+
Sbjct: 407 TAVYLVDRLALRAGNEKGEDEADTVGCCSLRCEHVMLR-----PPNLVTFDFLGKDSVRF 461
Query: 298 YNE-VPVEKRVFKNLQLFVENKKGSDD-LFDRLNTSVLNKHLSELMEGLTAKVFRTYNAS 355
Y E + V +VFKNL++F + KG D +FDR+ T+VLNK+ + M+GL+AKVFRTYNAS
Sbjct: 462 YQEDIEVSPQVFKNLRIFKKEPKGPQDPIFDRIQTTVLNKYFGKFMKGLSAKVFRTYNAS 521
Query: 356 ITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
IT Q++L + + AEK+LA+NRANR VA+LCNHQ++V K+H +M + +++
Sbjct: 522 ITFQEELQNTPK-EGTVAEKLLAFNRANRNVAILCNHQKNVSKTHGAAMDKMGDRL 576
>gi|395145856|gb|AFN53368.1| DNA topoisomerase 1, partial [Crematogaster sp. ss15_mva]
Length = 267
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/253 (82%), Positives = 232/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EEIATFYARM++H+YTTK AFN+NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEIATFYARMLDHDYTTKPAFNSNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|254570697|ref|XP_002492458.1| Topoisomerase I [Komagataella pastoris GS115]
gi|238032256|emb|CAY70271.1| Topoisomerase I [Komagataella pastoris GS115]
Length = 763
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/409 (50%), Positives = 281/409 (68%), Gaps = 9/409 (2%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERA--VITDLSKCDF 63
K + L AEE+A F+ M+ E+ AF NF D++K + E A I KCDF
Sbjct: 169 KPVDLPIQAEEVACFFGAMLNTEHAQNPAFQNNFFSDFKKIVLEHGGANVEIESFDKCDF 228
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
K+ ++ + +K+++ +K++IK E + ++Y C ++G +E++GNFRIEPPGLFR
Sbjct: 229 SKIFDHYETQKSLKKSLTAAQKREIKSEKDKFEEKYKYCLLNGRRERVGNFRIEPPGLFR 288
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPK G++K+R+ ED+ +N S+D+ +PPPP GH+WKE++HDN V WLA+W ENV
Sbjct: 289 GRGSHPKTGRVKKRIYPEDVSLNLSEDAPIPPPPEGHQWKEIKHDNTVAWLATWRENVTN 348
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
VKY++ S LKG D++K+E AR+L K I++IR++Y+ ++ SK M RQ AVA Y I
Sbjct: 349 TVKYVLFAADSSLKGRSDFKKFEKARELKKYIHRIRKDYKKNFSSKVMLERQMAVATYLI 408
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIRYY EV V
Sbjct: 409 DVFALRAGGEKAEDEADTVGCCSLRYEHVTL-----KPPNTVVFDFLGKDSIRYYQEVNV 463
Query: 304 EKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
++VFKNL+LF ++ K+ DDLFDRL ++LNKHL + GL+AKVFRTYNAS T+Q QL
Sbjct: 464 HEKVFKNLRLFKKSPKQPGDDLFDRLTPNILNKHLQNYLPGLSAKVFRTYNASKTMQDQL 523
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+ L+ + S EK++ YN ANR VA+LCNHQR+ PKSHD + + + I
Sbjct: 524 D-LIPNEGSVGEKVVKYNAANREVAILCNHQRTKPKSHDMGVQRISDNI 571
>gi|173004|gb|AAA35162.1| topoisomerase I [Saccharomyces cerevisiae]
Length = 769
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/405 (52%), Positives = 275/405 (67%), Gaps = 11/405 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLSK 60
GK + L AEE+A F+A ++E ++ F NF D+ + + E + I + S+
Sbjct: 172 GKPVDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSR 231
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KM YF + E++K ++ +EKK+I+ E E ++Y C +DG +E++GNF++EPP
Sbjct: 232 CDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPD 291
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LF GRG HPK GKLKRRV EDI++N SKD+ VPP P GHKW E+RHDN V WLA W EN
Sbjct: 292 LFXGRGAHPKTGKLKRRVNPEDIVLNLSKDAPVPPAPEGHKWGEIRHDNTVQWLAMWREN 351
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ L +S LKG+ D++K+E AR+L I+ IR +Y + KSK M RQ+AVA+
Sbjct: 352 IFNSFKYVRLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAI 411
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y E
Sbjct: 412 YLIDVFALRAGGEKSEDEADTVGCCSLRYEHVTLK-----PPNTVIFDFLGKDSIRFYQE 466
Query: 301 VPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+K+VFKNL +F K+ LFDRL+ S+LNK+L M GLTAKVFRTYNAS T+Q
Sbjct: 467 VEVDKQVFKNLTIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQ 526
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSM 404
QL+ L+ S AEKIL YN ANR VA+LCNHQR+V K H +++
Sbjct: 527 DQLD-LIPNKGSVAEKILKYNAANRTVAILCNHQRTVTKGHAQTV 570
>gi|320033421|gb|EFW15369.1| DNA topoisomerase 1 [Coccidioides posadasii str. Silveira]
Length = 905
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/427 (50%), Positives = 281/427 (65%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSM--------TEKE 51
M+ G + L DAEE+A F+ M+ + + F NF +D+ + ++
Sbjct: 298 MKYDGVPISLEPDAEEVAGFFGSMLNSTHNVENPTFQKNFFEDFTAIIKKTGGAKDSQGN 357
Query: 52 RAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
+ +I D KCDFR + Y+ K EE+KA+ E+K++K E EA Y C DG K+K+
Sbjct: 358 KVLIKDFKKCDFRPIFEYYEMKREEKKALPAAERKRLKVEKEAAEAPYMYCMWDGRKQKV 417
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN K + VPPPP GHKWKEV+HD +
Sbjct: 418 GNFRVEPPALFRGRGEHPKTGRVKTRVQPEQITINIGKGAAVPPPPAGHKWKEVKHDQEG 477
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 478 TWLAMWQENINGNYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYRKGLKDELM 537
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 538 ANRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLKP-----PNKVIFDFLG 592
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M GLTAKVFR
Sbjct: 593 KDSIRFYDEVEVDPQVFKNLKIFKKAPKKDGDEIFDRLTTSALNKHLSGYMAGLTAKVFR 652
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M+ + EK+ YN ANR VA+LCNH+R+V H M L E+
Sbjct: 653 TYNASYTMATLLRQ-MNATGTIHEKVKQYNDANRKVAILCNHKRTVAAGHANQMEKLGER 711
Query: 411 ISNKRKQ 417
I R Q
Sbjct: 712 IKGLRYQ 718
>gi|37729654|gb|AAO26204.1| type I topoisomerase [Trypanosoma cruzi]
Length = 664
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/435 (49%), Positives = 293/435 (67%), Gaps = 9/435 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+E KL+ + EE+AT +A M EH+Y E F NF WR+ + ++ I L CDF
Sbjct: 74 GREFKLTPEEEEVATMFAVMREHDYYRNEIFRRNFFSSWREILDRRQHP-IRRLELCDFE 132
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + +++ E++ + +KEEKK+++ E E + Y C DG KE++ NFR+EPPGLFRG
Sbjct: 133 PIYQWHLREREKKLSRTKEEKKQLRLEAEKEAEPYKWCVWDGKKEQVANFRVEPPGLFRG 192
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HP MGKLK+RV+ EDI IN + S +P PP GH+WKEV H++ VTWLA W +++ G
Sbjct: 193 RGQHPMMGKLKKRVEPEDITINIDEFSPIPKPPEGHRWKEVLHEHNVTWLAMWRDSILGS 252
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+ML PSS +KG+ D K+E AR+L +++IR Y D++S+E+ QRAVA+YFID
Sbjct: 253 FKYVMLAPSSAIKGQSDMLKFEKARELKNHVDEIRRCYIEDFESRELMKAQRAVAMYFID 312
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKP-YVVCFDFLGKDSIRYYNEVPV 303
KLALR GNEK D+ADTVGCCSLRVEHI+L KP YVV FDFLGKDSIRY NE V
Sbjct: 313 KLALRVGNEKGSDEADTVGCCSLRVEHIEL------KPDYVVKFDFLGKDSIRYENEAVV 366
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
RV++ L+ F + KK DD+FD + +VLN HL M GL+AKVFRTYNASITL +
Sbjct: 367 LPRVYELLRRFTKGKKTGDDIFDMITPTVLNDHLKSFMAGLSAKVFRTYNASITLDRWFK 426
Query: 364 E-LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
E + P S A+K+ +N+AN VA+LCNHQ+S+ K+H M L +K S R + +
Sbjct: 427 EKPVPPSASVADKLAYFNKANTEVAILCNHQKSISKNHHNLMHQLTQKSSYTRTIIDALK 486
Query: 423 RALKDAKKAGESKAM 437
RA + KK +A+
Sbjct: 487 RAQETTKKKSLEQAV 501
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 81/105 (77%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W +++ G KY+ML PSS +KG+ D K+E AR+L +++IR Y D++S+
Sbjct: 238 NVTWLAMWRDSILGSFKYVMLAPSSAIKGQSDMLKFEKARELKNHVDEIRRCYIEDFESR 297
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
E+ QRAVA+YFIDKLALR GNEK D+ADTVGCCSLRVEHI+L
Sbjct: 298 ELMKAQRAVAMYFIDKLALRVGNEKGSDEADTVGCCSLRVEHIEL 342
>gi|303322999|ref|XP_003071491.1| DNA topoisomerase I, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240111193|gb|EER29346.1| DNA topoisomerase I, putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 905
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/427 (50%), Positives = 281/427 (65%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSM--------TEKE 51
M+ G + L DAEE+A F+ M+ + + F NF +D+ + ++
Sbjct: 298 MKYDGVPISLEPDAEEVAGFFGSMLNSTHNVENPTFQKNFFEDFTAIIKKTGGAKDSQGN 357
Query: 52 RAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
+ +I D KCDFR + Y+ K EE+KA+ E+K++K E EA Y C DG K+K+
Sbjct: 358 KVLIKDFKKCDFRPIFEYYEMKREEKKALPAAERKRLKVEKEAAEAPYMYCMWDGRKQKV 417
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN K + VPPPP GHKWKEV+HD +
Sbjct: 418 GNFRVEPPALFRGRGEHPKTGRVKTRVQPEQITINIGKGAAVPPPPAGHKWKEVKHDQEG 477
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 478 TWLAMWQENINGNYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYRKGLKDELM 537
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 538 ANRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLKP-----PNKVIFDFLG 592
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M GLTAKVFR
Sbjct: 593 KDSIRFYDEVEVDPQVFKNLKIFKKAPKKDGDEIFDRLTTSALNKHLSGYMAGLTAKVFR 652
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M+ + EK+ YN ANR VA+LCNH+R+V H M L E+
Sbjct: 653 TYNASYTMATLLRQ-MNATGTIHEKVKQYNDANRKVAILCNHKRTVAAGHANQMEKLGER 711
Query: 411 ISNKRKQ 417
I R Q
Sbjct: 712 IKGLRYQ 718
>gi|330921713|ref|XP_003299539.1| hypothetical protein PTT_10547 [Pyrenophora teres f. teres 0-1]
gi|311326764|gb|EFQ92378.1| hypothetical protein PTT_10547 [Pyrenophora teres f. teres 0-1]
Length = 905
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/424 (50%), Positives = 288/424 (67%), Gaps = 16/424 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWR----KSMTEKERAV----I 55
G + L +DAEE+ATFY M+ + + FN NF +D+ K+ K+++ I
Sbjct: 302 GVPVTLHKDAEEVATFYGSMLNSTHNVENPTFNKNFFEDFTAILDKTGHGKDKSGNTVKI 361
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
KC+F+ + +F + ++KA+S EKK +K E EA +Y C DG K+K+GNFR
Sbjct: 362 KKFEKCNFKPIFEWFDAERAKKKALSVAEKKALKAEKEAAEADYMYCLWDGRKQKVGNFR 421
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRGEHPK G++K+RV E I IN + +K+P PP GH+WKE++HD++ TWLA
Sbjct: 422 VEPPGLFRGRGEHPKTGRVKKRVMPEQITINIGEKAKIPEPPAGHRWKEIKHDHEGTWLA 481
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ D SK M RQ
Sbjct: 482 MWQENINGAYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYRKDLNSKMMADRQ 541
Query: 236 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSI 295
RA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ +HI L P V FDFLGKDSI
Sbjct: 542 RATAIYLIDQFALRAGNEKGEDEADTVGCCSLKFQHITLR-----PPETVIFDFLGKDSI 596
Query: 296 RYYNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
R+Y+EV V+ +VFKNL+LF E K DD+FDRL TS LNKHL+ M GLTAKVFRTYNA
Sbjct: 597 RFYDEVKVDPQVFKNLKLFKKEPKTTGDDIFDRLTTSALNKHLTSYMPGLTAKVFRTYNA 656
Query: 355 SITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNK 414
S T+ + L E M + EK+ AYN ANR VA+LCNH+R+V SH S+ + E+I+
Sbjct: 657 SYTMARLLKE-MKATGTVQEKVKAYNDANREVAILCNHKRTVAASHATSIEKMNERINGL 715
Query: 415 RKQV 418
R Q
Sbjct: 716 RYQA 719
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 79/103 (76%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ D SK M
Sbjct: 478 TWLAMWQENINGAYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYRKDLNSKMM 537
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ +HI L
Sbjct: 538 ADRQRATAIYLIDQFALRAGNEKGEDEADTVGCCSLKFQHITL 580
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Query: 426 KDAKKAGESKAMTDKKKTA-LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
K K E K T +K A + ++ +++ +++Q DKE NK +ALGTSK+NY+DPR++V
Sbjct: 811 KTGKIEAEGKGPTVEKLEANVEKIVQRIENMKIQMEDKEGNKEVALGTSKINYIDPRLTV 870
Query: 485 TW 486
+
Sbjct: 871 VF 872
>gi|395145748|gb|AFN53314.1| DNA topoisomerase 1, partial [Crematogaster mesonotalis]
Length = 267
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/253 (81%), Positives = 232/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTESERAKIHDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|119189549|ref|XP_001245381.1| hypothetical protein CIMG_04822 [Coccidioides immitis RS]
gi|392868286|gb|EAS34053.2| topoisomerase I [Coccidioides immitis RS]
Length = 905
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/427 (50%), Positives = 281/427 (65%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSM--------TEKE 51
M+ G + L DAEE+A F+ M+ + + F NF +D+ + ++
Sbjct: 298 MKYDGVPISLEPDAEEVAGFFGSMLNSTHNVENPTFQKNFFEDFTAIIKKTGGAKDSQGN 357
Query: 52 RAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
+ +I D KCDFR + Y+ K EE+KA+ E+K++K E EA Y C DG K+K+
Sbjct: 358 KVLIKDFKKCDFRPIFEYYEMKREEKKALPAAERKRLKAEKEAAEAPYMYCMWDGRKQKV 417
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN K + VPPPP GHKWKEV+HD +
Sbjct: 418 GNFRVEPPALFRGRGEHPKTGRVKIRVQPEQITINIGKGAAVPPPPAGHKWKEVKHDQEG 477
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 478 TWLAMWQENINGNYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYRKGLKDELM 537
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 538 ANRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLKP-----PNKVIFDFLG 592
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M GLTAKVFR
Sbjct: 593 KDSIRFYDEVEVDPQVFKNLKIFKKAPKKDGDEIFDRLTTSALNKHLSGYMAGLTAKVFR 652
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M+ + EK+ YN ANR VA+LCNH+R+V H M L E+
Sbjct: 653 TYNASYTMATLLRQ-MNATGTIHEKVKQYNDANRKVAILCNHKRTVAAGHANQMEKLGER 711
Query: 411 ISNKRKQ 417
I R Q
Sbjct: 712 IKGLRYQ 718
>gi|395145698|gb|AFN53289.1| DNA topoisomerase 1, partial [Crematogaster coarctata]
gi|395145736|gb|AFN53308.1| DNA topoisomerase 1, partial [Crematogaster lineolata]
gi|395145778|gb|AFN53329.1| DNA topoisomerase 1, partial [Crematogaster pilosa]
gi|395145788|gb|AFN53334.1| DNA topoisomerase 1, partial [Crematogaster scutellaris]
gi|395145810|gb|AFN53345.1| DNA topoisomerase 1, partial [Crematogaster ionia]
gi|395145904|gb|AFN53392.1| DNA topoisomerase 1, partial [Crematogaster agnetis]
gi|395145906|gb|AFN53393.1| DNA topoisomerase 1, partial [Crematogaster aberrans]
Length = 267
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145892|gb|AFN53386.1| DNA topoisomerase 1, partial [Crematogaster telolafy]
Length = 267
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 232/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAKINDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPSGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPSGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145772|gb|AFN53326.1| DNA topoisomerase 1, partial [Crematogaster reticulata]
Length = 267
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/253 (81%), Positives = 232/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN+NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAAFNSNFFHDWREVMTESERAKIHDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145718|gb|AFN53299.1| DNA topoisomerase 1, partial [Crematogaster fritzi]
Length = 267
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145674|gb|AFN53277.1| DNA topoisomerase 1, partial [Crematogaster aculeata]
Length = 267
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTENVQGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENVQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRDDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
+LALRAGNEKDED
Sbjct: 255 RLALRAGNEKDED 267
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTENVQGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENVQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID+LALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRDDWKSKEMRIRQRAVALYFIDRLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|169603291|ref|XP_001795067.1| hypothetical protein SNOG_04654 [Phaeosphaeria nodorum SN15]
gi|160706367|gb|EAT88414.2| hypothetical protein SNOG_04654 [Phaeosphaeria nodorum SN15]
Length = 887
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/424 (50%), Positives = 283/424 (66%), Gaps = 16/424 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWRKSMT--------EKERAVI 55
G + L +AEE ATFY M+ + + FN NF +D+ + + + I
Sbjct: 284 GIPVTLQPEAEEAATFYGSMLNSTHNVENPTFNKNFFEDFTAILDKTGHGKDKDGKTVKI 343
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
KCDF+ + +F +KA+ EKK +K E +A EY C DG K+K+GNFR
Sbjct: 344 KKFEKCDFKPIFEHFEADRAAKKALPAAEKKALKAEKDAAEAEYMFCMWDGRKQKVGNFR 403
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRGEHPK G++K+RV E I IN +++KVPPPP GH+WKEV+HD++ TWLA
Sbjct: 404 VEPPGLFRGRGEHPKTGRIKKRVAPEQITINIGENAKVPPPPAGHRWKEVKHDHEGTWLA 463
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ + KS++M RQ
Sbjct: 464 MWQENINGAYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRQDYRRELKSEKMVDRQ 523
Query: 236 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSI 295
RA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ +HI L P V FDFLGKDSI
Sbjct: 524 RATAIYLIDQFALRAGNEKGEDEADTVGCCSLKFQHITLR-----PPETVIFDFLGKDSI 578
Query: 296 RYYNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
R+Y+EV V+ +VFKNL++F E K DD+FDRL TS LNKHL+ M GLTAKVFRTYNA
Sbjct: 579 RFYDEVKVDAQVFKNLKIFKKEPKTVGDDIFDRLTTSALNKHLTSYMPGLTAKVFRTYNA 638
Query: 355 SITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNK 414
S T+ + L L + EK+ AYN ANR VA+LCNH+R+V +H S+ + EKI
Sbjct: 639 SYTMARLLKSLKATGTIQ-EKVKAYNDANREVAILCNHKRTVAATHGASIDKMNEKIKGL 697
Query: 415 RKQV 418
R QV
Sbjct: 698 RYQV 701
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 81/103 (78%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ + KS++M
Sbjct: 460 TWLAMWQENINGAYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRQDYRRELKSEKM 519
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ +HI L
Sbjct: 520 VDRQRATAIYLIDQFALRAGNEKGEDEADTVGCCSLKFQHITL 562
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 426 KDAKKAGESKAMTDKKKTA-LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
K K E K T +K A + ++ +++ + +Q DKE NK +ALGTSK+NY+DPR++V
Sbjct: 793 KTGKVEAEGKGPTVEKLEANIDKINQRIENMRIQMEDKEGNKEVALGTSKINYIDPRLTV 852
Query: 485 TW 486
+
Sbjct: 853 VF 854
>gi|395145918|gb|AFN53399.1| DNA topoisomerase 1, partial [Crematogaster longipilosa]
Length = 267
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTESERAKIQDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145690|gb|AFN53285.1| DNA topoisomerase 1, partial [Crematogaster binghamii]
Length = 267
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTESERAKIQDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|50286731|ref|XP_445795.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525101|emb|CAG58714.1| unnamed protein product [Candida glabrata]
Length = 717
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/412 (50%), Positives = 282/412 (68%), Gaps = 11/412 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE----KERAVITDLSK 60
G + L +AEE+A F+A ++E + F NF +D++ + + + I +
Sbjct: 120 GNPVDLPLEAEEVAGFFAHLLETPHAQNPVFQKNFFEDFKHVLNDAGGTQNGIEIESFDR 179
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
DF MH YFVQ EE+K+M+ +KK+I+ E E ++Y C +DG +E++GNF++EPP
Sbjct: 180 MDFSAMHDYFVQLKEEKKSMTAMQKKEIRLEREKFEEKYKFCELDGRREQVGNFKVEPPD 239
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRR++ EDI++N + + +PPPP GH+W E+RHDN V WLA W EN
Sbjct: 240 LFRGRGAHPKTGKLKRRIRPEDIVLNLGEGAPIPPPPSGHQWGEIRHDNTVQWLAMWREN 299
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ G KY+ L +S LKG+ D++K+E AR+L K I++IR+ Y+ ++KSK M RQ+AVA+
Sbjct: 300 IFGSFKYVRLAANSSLKGQSDFKKFEKARELKKHIDRIRKEYRNNFKSKLMVERQKAVAV 359
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK E++ADTVGCCSLR EHI L P V FDFLGKDSIR+Y E
Sbjct: 360 YLIDVFALRAGGEKSEEEADTVGCCSLRYEHITLK-----PPNTVIFDFLGKDSIRFYQE 414
Query: 301 VPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+ +VFKNL LF + K+ LFDRL+ S+LNK L M GLTAKVFRTYNAS T+Q
Sbjct: 415 VQVDPKVFKNLALFKKPPKQPGHQLFDRLDPSLLNKFLQNYMTGLTAKVFRTYNASKTMQ 474
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+QL+ L+ + S AEK+L YN ANR VA+LCNHQR+V H KS+ ++I
Sbjct: 475 EQLD-LIPNEGSVAEKLLKYNAANRTVAILCNHQRTVTAGHAKSVAKSSDRI 525
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 79/105 (75%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA W EN+ G KY+ L +S LKG+ D++K+E AR+L K I++IR+ Y+ ++KSK
Sbjct: 289 TVQWLAMWRENIFGSFKYVRLAANSSLKGQSDFKKFEKARELKKHIDRIRKEYRNNFKSK 348
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M RQ+AVA+Y ID ALRAG EK E++ADTVGCCSLR EHI L
Sbjct: 349 LMVERQKAVAVYLIDVFALRAGGEKSEEEADTVGCCSLRYEHITL 393
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 35/49 (71%)
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+K + A+ RL +++ +VQ D+E N ++LGTSK+NY+DPR+SV +
Sbjct: 636 VEKLEKAIERLDQRISTSQVQLQDREANSEVSLGTSKINYIDPRLSVVF 684
>gi|395145692|gb|AFN53286.1| DNA topoisomerase 1, partial [Crematogaster borneensis]
gi|395145722|gb|AFN53301.1| DNA topoisomerase 1, partial [Crematogaster sp. HFmsp10]
Length = 267
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 232/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN+NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKSAFNSNFFHDWREVMTESERAKINDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145680|gb|AFN53280.1| DNA topoisomerase 1, partial [Crematogaster cf. wasmanni BBB-2012]
gi|395145686|gb|AFN53283.1| DNA topoisomerase 1, partial [Crematogaster cf. buchneri BBB-2012]
gi|395145744|gb|AFN53312.1| DNA topoisomerase 1, partial [Crematogaster marioni]
gi|395145762|gb|AFN53321.1| DNA topoisomerase 1, partial [Crematogaster opaca]
Length = 267
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145900|gb|AFN53390.1| DNA topoisomerase 1, partial [Crematogaster stadelmanni]
Length = 267
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145916|gb|AFN53398.1| DNA topoisomerase 1, partial [Crematogaster sordidula]
Length = 267
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTESERAKIHDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145930|gb|AFN53405.1| DNA topoisomerase 1, partial [Tetramorium validiusculum]
Length = 267
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 232/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK FN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKYVFNNNFFHDWREVMTESERAKIVDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDSK+P PP GHKW+EVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSKIPKPPSGHKWREVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLAKSI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAKSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/88 (90%), Positives = 85/88 (96%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLAKSI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAKSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDED 570
EMRIRQRAVALYFIDKLALRAGNEKDED
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145714|gb|AFN53297.1| DNA topoisomerase 1, partial [Crematogaster flavomicrops]
Length = 267
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 232/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTESERAKIHDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145710|gb|AFN53295.1| DNA topoisomerase 1, partial [Crematogaster emeryi]
gi|395145776|gb|AFN53328.1| DNA topoisomerase 1, partial [Crematogaster paradoxa]
Length = 267
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTESERAKIHDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|367005136|ref|XP_003687300.1| hypothetical protein TPHA_0J00430 [Tetrapisispora phaffii CBS 4417]
gi|357525604|emb|CCE64866.1| hypothetical protein TPHA_0J00430 [Tetrapisispora phaffii CBS 4417]
Length = 787
Score = 427 bits (1097), Expect = e-116, Method: Compositional matrix adjust.
Identities = 257/643 (39%), Positives = 365/643 (56%), Gaps = 71/643 (11%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLSK 60
G + L AEE+A FYA +I ++ F NF D++K + E + I + SK
Sbjct: 187 GNPVDLPPAAEEVAGFYAGVIGTDHEQNPIFRKNFFTDFKKVLQENGGTLNGVSIENFSK 246
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF ++ Y Q+ E +K +S +EKK+++ E E + Y C ++G +E++GNFR+EPP
Sbjct: 247 CDFSRIVDYLQQQKEIKKQLSAQEKKQLRIEKEEFEEPYKFCEVNGRREQVGNFRVEPPD 306
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRR+ EDI++N KD+ +PP P GH W E++HDN V WLA W EN
Sbjct: 307 LFRGRGAHPKTGKLKRRIYPEDIVLNLDKDAPIPPVPEGHHWGEIKHDNTVQWLAMWREN 366
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ L +S KG+ D +K+E AR+L K IN IR +Y+ + K+K M RQ+AVA+
Sbjct: 367 ISNSFKYVRLAANSSFKGQSDLKKFEKARELKKHINTIRRDYKKNMKNKLMVERQKAVAI 426
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK +D+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y E
Sbjct: 427 YLIDVFALRAGGEKSDDEADTVGCCSLRYEHVTLK-----PPQTVIFDFLGKDSIRFYQE 481
Query: 301 VPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V VEK+VFKNL +F KK D LFDRL+ S+LNK L M GLTAKVFRTYNAS T+Q
Sbjct: 482 VEVEKQVFKNLAIFKRLPKKPGDQLFDRLDPSILNKFLQNYMPGLTAKVFRTYNASKTMQ 541
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVK 419
QL+ L+ S AEK+L YN ANR VA+LCNHQR++ K+H +++ EK S++ +++
Sbjct: 542 DQLD-LIPNKGSVAEKLLKYNAANRTVAILCNHQRTISKTHKQTI----EKASDRIREL- 595
Query: 420 DAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
E +A RLK+ +++++ +K +NK K
Sbjct: 596 -------------EWQAW---------RLKKAMVQIDADAVNKSKNKKFLTKVIKTFTKT 633
Query: 480 PRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSI-----NKIRE- 533
+ + L EN + Q +YI E D +K+E +L +S+ K+ E
Sbjct: 634 EQKKIHKLIIDRENDRVQKRYIR---------ENDAKKFENEEELGESVLKEWLQKVEEK 684
Query: 534 --NYQADWKSKEMRIRQRAVALYFI----DKLALRAGNE----KDEDQADTVGCCSLRVE 583
Y + +S E+ I + + I +KL LR KD ++ V + ++
Sbjct: 685 KIEYNKEVESDEIEITTKINTVEKIEKQLEKLKLRIETSSIQLKDREENSQVSLGTSKIN 744
Query: 584 HIQLH--------EEKDEKKIYNKTQRAKFRWAIDMATADFVF 618
+I + +KI+ KT R KF+WAI+ ++ F
Sbjct: 745 YIDPRLSVVFCKKYDIPIEKIFTKTLREKFKWAIESVDENWRF 787
>gi|395145894|gb|AFN53387.1| DNA topoisomerase 1, partial [Crematogaster mpanjono]
gi|395145896|gb|AFN53388.1| DNA topoisomerase 1, partial [Crematogaster volamena]
Length = 267
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAKINDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|297796405|ref|XP_002866087.1| TOP1alpha [Arabidopsis lyrata subsp. lyrata]
gi|297311922|gb|EFH42346.1| TOP1alpha [Arabidopsis lyrata subsp. lyrata]
Length = 911
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 237/495 (47%), Positives = 319/495 (64%), Gaps = 27/495 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ + EE+AT +A M E EY K F NF DWR+ + + +I +L CDF
Sbjct: 393 GKPVDLTPEQEEVATMFAVMRETEYYNKPKFRENFWNDWRRLLGKNH--IIKNLDDCDFT 450
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ +++Q+ E +K M+ EEK+ +K+E ++Y +DG +E+IGNFR+EPPGLFRG
Sbjct: 451 PIYEWYIQEKETKKLMTAEEKRILKEEKLKQEEKYMWAVLDGVRERIGNFRVEPPGLFRG 510
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMGKLK+R++ DI IN K++ VP P PG +WKEV+HDN VTWLA W + +
Sbjct: 511 RGEHPKMGKLKKRIRPCDITINIGKEAPVPECPIPGERWKEVKHDNTVTWLAFWNDPINP 570
Query: 184 -QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L SS LKG+ D +KYE I IR Y D+ +K++ RQ AVA Y
Sbjct: 571 KEFKYVFLAASSSLKGQSDKEKYE-----KNYIGSIRAAYTKDFNNKDVTKRQIAVATYL 625
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+V +++ P + FDFLGKDSI+Y N V
Sbjct: 626 IDKLALRAGNEKDDDEADTVGCCTLKVGNVECIP-----PNKLKFDFLGKDSIQYVNTVE 680
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+K + F K +DDLFD L+TS LN HL ELM GLTAKVFRTYNASITL L
Sbjct: 681 VEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELMAGLTAKVFRTYNASITLDLML 740
Query: 363 N-ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
+ E D D EK++ Y +AN+ VA++CNHQR+V KSH + L KI R+Q+K+
Sbjct: 741 SKETRDGDV--PEKVVVYQQANKEVAIICNHQRTVSKSHGAQVEKLAVKIEELREQIKEL 798
Query: 422 ERALKDAKKAGESKAMTD---KKKTALGRLKEQLL----KLEVQETD---KEENKTIALG 471
L AKK +D K+ L+++++ K+E E D KE+ KT+ALG
Sbjct: 799 NIDLNRAKKGRTPLMGSDGKRKRNLTPEALEKKIMQTQGKIEKMERDMQTKEDMKTVALG 858
Query: 472 TSKLNYLDPRISVTW 486
TSK+NY+DPRI+V W
Sbjct: 859 TSKINYMDPRITVAW 873
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 6/105 (5%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L SS LKG+ D +KYE I IR Y D+ +
Sbjct: 557 TVTWLAFWNDPINPKEFKYVFLAASSSLKGQSDKEKYE-----KNYIGSIRAAYTKDFNN 611
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 612 KDVTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 656
>gi|395145888|gb|AFN53384.1| DNA topoisomerase 1, partial [Crematogaster razana]
Length = 267
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAKINDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPSGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPSGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145766|gb|AFN53323.1| DNA topoisomerase 1, partial [Crematogaster sp. ortho.CAR1]
Length = 267
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAKINDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPSGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPSGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145730|gb|AFN53305.1| DNA topoisomerase 1, partial [Crematogaster isolata]
gi|395145758|gb|AFN53319.1| DNA topoisomerase 1, partial [Crematogaster obnigra]
gi|395145780|gb|AFN53330.1| DNA topoisomerase 1, partial [Crematogaster sagei]
gi|395145816|gb|AFN53348.1| DNA topoisomerase 1, partial [Crematogaster cf. ochracea BBB-2012]
gi|395145822|gb|AFN53351.1| DNA topoisomerase 1, partial [Crematogaster castanea]
gi|395145826|gb|AFN53353.1| DNA topoisomerase 1, partial [Crematogaster cf. latuka BBB-2012]
gi|395145828|gb|AFN53354.1| DNA topoisomerase 1, partial [Crematogaster sp. ss.TZ2]
gi|395145830|gb|AFN53355.1| DNA topoisomerase 1, partial [Crematogaster cf. gerstaeckeri
BBB-2012]
gi|395145832|gb|AFN53356.1| DNA topoisomerase 1, partial [Crematogaster cf. rufigena BBB-2012]
gi|395145842|gb|AFN53361.1| DNA topoisomerase 1, partial [Crematogaster sewellii]
gi|395145848|gb|AFN53364.1| DNA topoisomerase 1, partial [Crematogaster sp. ss07_kba]
gi|395145850|gb|AFN53365.1| DNA topoisomerase 1, partial [Crematogaster lobata]
gi|395145852|gb|AFN53366.1| DNA topoisomerase 1, partial [Crematogaster sewellii dentata]
gi|395145858|gb|AFN53369.1| DNA topoisomerase 1, partial [Crematogaster degeeri]
gi|395145860|gb|AFN53370.1| DNA topoisomerase 1, partial [Crematogaster sp. ss18_anka]
gi|395145862|gb|AFN53371.1| DNA topoisomerase 1, partial [Crematogaster sp. ss19_mal]
gi|395145868|gb|AFN53374.1| DNA topoisomerase 1, partial [Crematogaster sp. ss23_loy]
gi|395145870|gb|AFN53375.1| DNA topoisomerase 1, partial [Crematogaster sp. ss24_rano]
Length = 267
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145910|gb|AFN53395.1| DNA topoisomerase 1, partial [Crematogaster sp. ss11_ahe]
Length = 267
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSSIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 81/92 (88%), Positives = 87/92 (94%), Gaps = 2/92 (2%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ D
Sbjct: 178 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRED 235
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 570
WKSKEMRIRQRAVALYFIDKLALRAGNEKDED
Sbjct: 236 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145702|gb|AFN53291.1| DNA topoisomerase 1, partial [Crematogaster coriaria]
Length = 267
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLAKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145696|gb|AFN53288.1| DNA topoisomerase 1, partial [Crematogaster torosa]
Length = 267
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAKINDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145912|gb|AFN53396.1| DNA topoisomerase 1, partial [Crematogaster arcuata]
Length = 267
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 232/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAKINDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|145352995|ref|XP_001420818.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581053|gb|ABO99111.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 491
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 226/466 (48%), Positives = 301/466 (64%), Gaps = 22/466 (4%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKE 83
M + +Y TK F NFM ++ ++ A ITD SKCDF KM+ +F+ E++K M+ E
Sbjct: 1 MKDSDYATKPVFVKNFMDGFKAALKNGPHAFITDFSKCDFTKMYMHFLAIREKKKEMTSE 60
Query: 84 EKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
EKK+IK + + + Y TIDG +EK+GNFR+EPPGLFRGRGEHPKMGK+KRRV EDI
Sbjct: 61 EKKRIKAQKDIDEEPYTWATIDGRREKVGNFRVEPPGLFRGRGEHPKMGKIKRRVVPEDI 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ-VKYIMLNPSSKLKGEKDW 202
IN KD+KVP PP GH WK V H++ TWLA W + + + KY+ +S +K E D
Sbjct: 121 TINIGKDAKVPEPPAGHSWKAVIHNDTATWLAGWNDVINVKDWKYVQFGATSTVKAESDQ 180
Query: 203 QKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTV 262
+KYE AR L K I KIR++Y+ + S+ + Q AVA Y +DKLALRAG EKDED ADTV
Sbjct: 181 KKYEKARSLHKYIEKIRKDYKRNMMSESKEMAQLAVATYLVDKLALRAGGEKDEDLADTV 240
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSD 322
G C+LR HI+ ++ V+ FDFLGKDSI+Y + +++ +K LQ FV+ K
Sbjct: 241 GVCTLRAGHIKFMDDN-----VIEFDFLGKDSIQYLQQHKIDEVAYKCLQRFVQGKGPDV 295
Query: 323 DLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRA 382
D+FD ++ +N HL LM GLT KVFRTYNASITL + L + D + +K Y+ A
Sbjct: 296 DIFDHVDPQKVNAHLQTLMPGLTIKVFRTYNASITLDRLLKDTKKND-TTLQKKATYDAA 354
Query: 383 NRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKK- 441
N+ VA+LCNHQ+ V K+HD M EK++ K+K + AK+ E K TD K
Sbjct: 355 NKEVAILCNHQKGVSKAHDAQM----EKLAEKKKDL---------AKQVAEMKKKTDDKN 401
Query: 442 -KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
K L LKE+ KL +Q KEE KT++LGTSK+NYLDPRI+++W
Sbjct: 402 QKKKLAALKERQSKLAIQMNMKEELKTVSLGTSKINYLDPRITLSW 447
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Query: 483 SVTWLASWTENVQGQV-KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+ TWLA W + + + KY+ +S +K E D +KYE AR L K I KIR++Y+ + S
Sbjct: 147 TATWLAGWNDVINVKDWKYVQFGATSTVKAESDQKKYEKARSLHKYIEKIRKDYKRNMMS 206
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
+ + Q AVA Y +DKLALRAG EKDED ADTVG C+LR HI+ ++
Sbjct: 207 ESKEMAQLAVATYLVDKLALRAGGEKDEDLADTVGVCTLRAGHIKFMDD 255
>gi|395145804|gb|AFN53342.1| DNA topoisomerase 1, partial [Crematogaster mjobergi]
gi|395145806|gb|AFN53343.1| DNA topoisomerase 1, partial [Crematogaster sp. ss_AUS5]
Length = 267
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK FN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPTFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145684|gb|AFN53282.1| DNA topoisomerase 1, partial [Crematogaster cf. gabonensis
BBB-2012]
gi|395145688|gb|AFN53284.1| DNA topoisomerase 1, partial [Crematogaster wellmani]
gi|395145790|gb|AFN53335.1| DNA topoisomerase 1, partial [Crematogaster sisa]
gi|395145838|gb|AFN53359.1| DNA topoisomerase 1, partial [Crematogaster cf. desperans BBB-2012]
Length = 267
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145708|gb|AFN53294.1| DNA topoisomerase 1, partial [Crematogaster decamera]
Length = 267
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKSAFNNNFFHDWREVMTESERAKINDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145792|gb|AFN53336.1| DNA topoisomerase 1, partial [Crematogaster minutissima smithi]
Length = 267
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTESERAKIHDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|71661561|ref|XP_817800.1| DNA topoisomerase IB, large subunit [Trypanosoma cruzi strain CL
Brener]
gi|70883013|gb|EAN95949.1| DNA topoisomerase IB, large subunit, putative [Trypanosoma cruzi]
Length = 664
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/435 (49%), Positives = 294/435 (67%), Gaps = 9/435 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+E KL+ + EE+AT +A M EH+Y E F NF WR+ + +K + I L CDF
Sbjct: 74 GREFKLTPEEEEVATMFAVMREHDYYRNEIFRRNFFSSWRE-ILDKRQHPIRRLELCDFE 132
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + +++ E++ + +KEEKK+++ E E + Y C DG KE++ NFR+EPPGLFRG
Sbjct: 133 PIYQWHLREREKKLSRTKEEKKQLRLEAEKEAEPYKWCVWDGKKEQVANFRVEPPGLFRG 192
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HP MGKLK+RV+ EDI IN + S +P PP GH+WKEV H++ VTWLA W +++ G
Sbjct: 193 RGQHPMMGKLKKRVEPEDITINIDEFSPIPKPPEGHRWKEVLHEHNVTWLAMWRDSILGS 252
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+ML PSS +KG+ D K+E AR+L +++IR Y D++S+E+ QRAVA+YFID
Sbjct: 253 FKYVMLAPSSAIKGQSDMLKFEKARELKNHVDEIRRCYIEDFESRELMKAQRAVAMYFID 312
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKP-YVVCFDFLGKDSIRYYNEVPV 303
KLALR GNEK D+ADTVGCCSLRVEHI+L KP +VV FDFLGKDSIRY NE V
Sbjct: 313 KLALRVGNEKGSDEADTVGCCSLRVEHIEL------KPDHVVKFDFLGKDSIRYENEAVV 366
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
RV++ L+ F + KK DD+FD + +VLN HL M GL+AKVFRTYNASITL +
Sbjct: 367 LPRVYELLRRFTKGKKTGDDIFDMITPTVLNDHLKSFMAGLSAKVFRTYNASITLDRWFK 426
Query: 364 E-LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
E + P S A+K+ +N+AN VA+LCNHQ+S+ K+H M L +K S R + +
Sbjct: 427 EKPVPPSASVADKLAYFNKANTEVAILCNHQKSISKNHHNLMHQLTQKSSYTRTIIDALK 486
Query: 423 RALKDAKKAGESKAM 437
RA + KK +A+
Sbjct: 487 RAQETTKKKSLEQAV 501
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 81/105 (77%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W +++ G KY+ML PSS +KG+ D K+E AR+L +++IR Y D++S+
Sbjct: 238 NVTWLAMWRDSILGSFKYVMLAPSSAIKGQSDMLKFEKARELKNHVDEIRRCYIEDFESR 297
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
E+ QRAVA+YFIDKLALR GNEK D+ADTVGCCSLRVEHI+L
Sbjct: 298 ELMKAQRAVAMYFIDKLALRVGNEKGSDEADTVGCCSLRVEHIEL 342
>gi|395145914|gb|AFN53397.1| DNA topoisomerase 1, partial [Crematogaster cf. dolens BBB-2012]
Length = 267
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK FN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTVFNNNFFHDWREVMTESERAKIHDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPSGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLAKSI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAKSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/127 (69%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPSGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLAKSI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAKSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|384250287|gb|EIE23767.1| DNA topoisomerase I [Coccomyxa subellipsoidea C-169]
Length = 554
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 236/498 (47%), Positives = 314/498 (63%), Gaps = 20/498 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M K + L+ + EE+AT A M +Y ++ F NF DW+K + K I DL K
Sbjct: 33 MLYDSKPVDLTLEQEEMATAMAVMTGTQYLERQQFLDNFWADWKKVLGPKH--AIRDLKK 90
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF ++ + + + E +KA+ KEEK +K E E ++ +D KE++GNFR+EPPG
Sbjct: 91 CDFTPIYEWHMAERERKKALPKEEKDTMKKEKEEAEAKFKHALVDDRKEQVGNFRVEPPG 150
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTE 179
LFRGRG+HPKMGK KRR+ DI IN K VP P PG KWKEVRHDN VTWLA W +
Sbjct: 151 LFRGRGDHPKMGKFKRRIYPRDITINIGKGVAVPEHPYPGQKWKEVRHDNTVTWLAFWKD 210
Query: 180 NVQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + KY+ L +S K + D KYE ARKL I IR+ Y+ DW+S +MR RQ AV
Sbjct: 211 PISAKDYKYVWLAANSTFKSDSDLAKYEKARKLKDYIGGIRKAYEKDWESADMRTRQMAV 270
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
ALYFIDKLALRAG+EKDED+ADTVGCC+L+VE++++ E+ K FDFLGKDSIRY
Sbjct: 271 ALYFIDKLALRAGHEKDEDEADTVGCCTLKVENVEVLEDNHIK-----FDFLGKDSIRYE 325
Query: 299 NEVPVEKRVFKNLQLFVEN------KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTY 352
NEV V +V ++ F + KK DLFD ++ + LNK L +LM+GL+ KVFRTY
Sbjct: 326 NEVAVHPKVHSLVRQFCKTTKDNKIKKPDMDLFDTMDATDLNKRLKDLMDGLSVKVFRTY 385
Query: 353 NASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKIS 412
NAS+TL L++ + EK Y+RAN+ VA+LCNHQRSVPK H M ++ K+
Sbjct: 386 NASVTLDALLHKESTTSTVD-EKKAEYDRANKEVAILCNHQRSVPKGHTGQMQKMEAKLL 444
Query: 413 NKRKQVKDAERALKDAKKA----GESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTI 468
++Q+ ER L A+K G D + + + ++ L KLE+ KE+ KT+
Sbjct: 445 EHQQQLDALERELTAARKGKAFEGAKARPVDSLERQIEKKRDALKKLELNAKVKEDLKTV 504
Query: 469 ALGTSKLNYLDPRISVTW 486
ALGTSK+NYLDPRI+V W
Sbjct: 505 ALGTSKINYLDPRITVAW 522
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 81/109 (74%), Gaps = 1/109 (0%)
Query: 483 SVTWLASWTENVQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L +S K + D KYE ARKL I IR+ Y+ DW+S
Sbjct: 201 TVTWLAFWKDPISAKDYKYVWLAANSTFKSDSDLAKYEKARKLKDYIGGIRKAYEKDWES 260
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
+MR RQ AVALYFIDKLALRAG+EKDED+ADTVGCC+L+VE++++ E+
Sbjct: 261 ADMRTRQMAVALYFIDKLALRAGHEKDEDEADTVGCCTLKVENVEVLED 309
>gi|395145712|gb|AFN53296.1| DNA topoisomerase 1, partial [Crematogaster flava]
gi|395145818|gb|AFN53349.1| DNA topoisomerase 1, partial [Crematogaster cf. rogenhoferi
BBB-2012]
Length = 267
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFNDWREVMTESERAKIHDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145694|gb|AFN53287.1| DNA topoisomerase 1, partial [Crematogaster cf. ferrarii BBB-2012]
gi|395145700|gb|AFN53290.1| DNA topoisomerase 1, partial [Crematogaster cf. cylindriceps
BBB-2012]
gi|395145798|gb|AFN53339.1| DNA topoisomerase 1, partial [Crematogaster cf. laeviceps BBB-2012]
gi|395145814|gb|AFN53347.1| DNA topoisomerase 1, partial [Crematogaster cf. excisa BBB-2012]
gi|395145824|gb|AFN53352.1| DNA topoisomerase 1, partial [Crematogaster sp. ss.TH1]
gi|395145836|gb|AFN53358.1| DNA topoisomerase 1, partial [Crematogaster flaviventris]
gi|395145854|gb|AFN53367.1| DNA topoisomerase 1, partial [Crematogaster sp. ss10_atbao]
gi|395145866|gb|AFN53373.1| DNA topoisomerase 1, partial [Crematogaster sp. ss22_isa]
gi|395145882|gb|AFN53381.1| DNA topoisomerase 1, partial [Crematogaster treubi]
Length = 267
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145884|gb|AFN53382.1| DNA topoisomerase 1, partial [Crematogaster weberi]
Length = 267
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLAKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145720|gb|AFN53300.1| DNA topoisomerase 1, partial [Crematogaster grevei]
gi|395145724|gb|AFN53302.1| DNA topoisomerase 1, partial [Crematogaster hova complex sp.
BBB-2012]
gi|395145734|gb|AFN53307.1| DNA topoisomerase 1, partial [Crematogaster liengmei]
gi|395145740|gb|AFN53310.1| DNA topoisomerase 1, partial [Crematogaster mahery]
gi|395145742|gb|AFN53311.1| DNA topoisomerase 1, partial [Crematogaster malala]
gi|395145786|gb|AFN53333.1| DNA topoisomerase 1, partial [Crematogaster sabatra]
gi|395145796|gb|AFN53338.1| DNA topoisomerase 1, partial [Crematogaster cf. luctans BBB-2012]
gi|395145834|gb|AFN53357.1| DNA topoisomerase 1, partial [Crematogaster cf. bequaerti BBB-2012]
Length = 267
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145812|gb|AFN53346.1| DNA topoisomerase 1, partial [Crematogaster fruhstorferi]
gi|395145880|gb|AFN53380.1| DNA topoisomerase 1, partial [Crematogaster tetracantha]
Length = 267
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLAKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|340053149|emb|CCC47436.1| putative DNA topoisomerase IB, large subunit [Trypanosoma vivax
Y486]
Length = 610
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 220/471 (46%), Positives = 309/471 (65%), Gaps = 9/471 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G++ ++ + EE+AT +A + E +Y E F NF WR+ + +K + I L CDF
Sbjct: 77 GQKFDMTPEEEEVATMFAVLREQDYYRNEIFRRNFFASWRE-ILDKRKHPIRRLELCDFT 135
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + +++ E++ +KEEKK+ + E + Y C DG +E++ NFR+EPPGLFRG
Sbjct: 136 PIYEWHLREREKKLNRTKEEKKEQRLATEKEAEPYKFCLWDGRREQVANFRVEPPGLFRG 195
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HP MG+LK+RV EDI IN ++S +P PP GHKWKEV HD+ VTWLA W +++ G
Sbjct: 196 RGQHPMMGRLKKRVTPEDITINIDENSPIPEPPRGHKWKEVLHDHNVTWLAMWRDSILGN 255
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+ML PSS +KG+ D K+E AR+L + ++ IR++Y D+ S + + QRAVA+YFID
Sbjct: 256 MKYVMLAPSSTIKGQSDMLKFEKARELKRHVDNIRKSYTGDFYSSNLMVAQRAVAMYFID 315
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALR GNEK D+ADTVGCCSLRVEHI+L K G VV FDFLGKDSIRY NE VE
Sbjct: 316 KLALRVGNEKGADEADTVGCCSLRVEHIEL---KPGN--VVKFDFLGKDSIRYENEAVVE 370
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
+V++ LQ F K+ SDD+FD + S LN HL M GL+AKVFRTYNAS TL + E
Sbjct: 371 TKVYELLQRFTARKRPSDDIFDMITPSSLNDHLKSFMNGLSAKVFRTYNASYTLDRWFQE 430
Query: 365 -LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+DP+ S A+K+ +N+AN VA+LCNHQR++PKSH +M +K K S+ + + +A +
Sbjct: 431 KPVDPNASLADKLAYFNKANTEVAILCNHQRTIPKSHYTTMHVMKSK-SDYTRSILNALK 489
Query: 424 ALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSK 474
+D K +A T K + R++ + L L + K+E TI S+
Sbjct: 490 RARDVSKKSLDEAATGFFK-EVDRMQYEWLDLYGTDEQKKEYDTIVQSRSQ 539
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 82/105 (78%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W +++ G +KY+ML PSS +KG+ D K+E AR+L + ++ IR++Y D+ S
Sbjct: 241 NVTWLAMWRDSILGNMKYVMLAPSSTIKGQSDMLKFEKARELKRHVDNIRKSYTGDFYSS 300
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+ + QRAVA+YFIDKLALR GNEK D+ADTVGCCSLRVEHI+L
Sbjct: 301 NLMVAQRAVAMYFIDKLALRVGNEKGADEADTVGCCSLRVEHIEL 345
>gi|395145902|gb|AFN53391.1| DNA topoisomerase 1, partial [Crematogaster ranavalonae]
Length = 267
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+A FYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVAAFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145844|gb|AFN53362.1| DNA topoisomerase 1, partial [Crematogaster degeeri lunaris]
Length = 267
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEM+LS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMRLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145732|gb|AFN53306.1| DNA topoisomerase 1, partial [Crematogaster lango]
gi|395145794|gb|AFN53337.1| DNA topoisomerase 1, partial [Crematogaster cf. concava BBB-2012]
Length = 267
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145774|gb|AFN53327.1| DNA topoisomerase 1, partial [Crematogaster osakensis]
Length = 267
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTESERAKIHDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERK+M+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKSMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145728|gb|AFN53304.1| DNA topoisomerase 1, partial [Crematogaster irritabilis]
Length = 267
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|254579975|ref|XP_002495973.1| ZYRO0C07458p [Zygosaccharomyces rouxii]
gi|238938864|emb|CAR27040.1| ZYRO0C07458p [Zygosaccharomyces rouxii]
Length = 843
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 254/638 (39%), Positives = 362/638 (56%), Gaps = 56/638 (8%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE----KERAVIT 56
M GK + L AEE+A F+A +++ ++ F +NF D+ + + E K I
Sbjct: 242 MYYNGKPVDLPPQAEEVAGFFAALLQSDHAKNTVFQSNFFNDFIEVLNENGGTKNGINIE 301
Query: 57 DLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRI 116
KCDF KM +F + E+RK +S +EKK+++ E E + + C +DG KE++GNF+I
Sbjct: 302 SFDKCDFTKMFEFFEMQKEQRKQLSPQEKKQLRMEREKFEEPFKYCELDGRKEQVGNFKI 361
Query: 117 EPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLAS 176
EPPGLFRGRG HPK GKLKRRV ED+++N KD+ +PP P G KW E+RHDN V WLA
Sbjct: 362 EPPGLFRGRGAHPKTGKLKRRVYPEDVVLNLDKDATIPPLPEGQKWGEIRHDNTVQWLAM 421
Query: 177 WTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQR 236
W EN+ KY+ +S L G+ D++K+E +R+L I+ IR++Y + K+K M RQ+
Sbjct: 422 WRENISNSFKYVRFAANSSLNGQSDFKKFEKSRQLKYHIDAIRKDYNKNLKNKVMLERQK 481
Query: 237 AVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIR 296
AVA+Y ID ALRAG EK +D+ADTVGCCSLR EH+ L P V FDFLGKDSIR
Sbjct: 482 AVAIYLIDVFALRAGGEKADDEADTVGCCSLRYEHVTLK-----PPNKVIFDFLGKDSIR 536
Query: 297 YYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNAS 355
+Y EV V+ +VFKNL +F K+ LFDRL+ SVLNKHL M+GLTAKVFRTYNAS
Sbjct: 537 FYQEVEVDPQVFKNLTIFKRPPKQPGHQLFDRLDPSVLNKHLQHYMQGLTAKVFRTYNAS 596
Query: 356 ITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKR 415
T+Q QL +L+ + S AEKIL YN ANR VA+LCNHQRSV K+H +S+ +KI
Sbjct: 597 KTMQDQL-DLIKNEGSVAEKILKYNAANRTVAILCNHQRSVAKTHAQSVQKASDKIEELE 655
Query: 416 KQVKDAERALKDAKKAGESK------AMTDKKKTALGRLKEQLLKLEVQETDKE---ENK 466
Q +RA+ K K + D +K + E++++ E+ + K+ EN
Sbjct: 656 WQKVRLKRAILQLDKNERKKRPKFFEEIDDFRKEVEASIHERIIEREIDKCHKKFAREND 715
Query: 467 TIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAK 526
+L LD + WL E ++ Q + +++K + + KL K
Sbjct: 716 KKRFEKQEL--LDESVLKEWLEK-VEELRQQYARELKTSVTEVKSSSN-----SIEKLEK 767
Query: 527 SINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
I K+ + RI ++ L +K+E+ ++G + +
Sbjct: 768 QIEKL-----------DQRIETSSIQL-----------RDKEENSQVSLGTSKINYIDPR 805
Query: 587 LHEEKDEK------KIYNKTQRAKFRWAIDMATADFVF 618
L +K +I+ K+ R KF+WAI+ A ++ F
Sbjct: 806 LSVVFCKKYGVPIERIFTKSLREKFKWAIESADENWRF 843
>gi|395145876|gb|AFN53378.1| DNA topoisomerase 1, partial [Crematogaster sumichrasti]
Length = 267
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTESERAKIHDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145782|gb|AFN53331.1| DNA topoisomerase 1, partial [Crematogaster sp. rhachio.PNG2]
Length = 267
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTESERAKIHDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145908|gb|AFN53394.1| DNA topoisomerase 1, partial [Crematogaster santschii]
Length = 267
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVR+D VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRYDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRYDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145676|gb|AFN53278.1| DNA topoisomerase 1, partial [Crematogaster acuta]
gi|395145704|gb|AFN53292.1| DNA topoisomerase 1, partial [Crematogaster corvina]
gi|395145716|gb|AFN53298.1| DNA topoisomerase 1, partial [Crematogaster formosa]
gi|395145764|gb|AFN53322.1| DNA topoisomerase 1, partial [Crematogaster victima]
gi|395145886|gb|AFN53383.1| DNA topoisomerase 1, partial [Crematogaster rasoherinae]
Length = 267
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAKINDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145768|gb|AFN53324.1| DNA topoisomerase 1, partial [Crematogaster baduvi]
Length = 267
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAAFNNNFFHDWREVMTESERAKINDLFKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|443923367|gb|ELU42619.1| topoisomerase I [Rhizoctonia solani AG-1 IA]
Length = 925
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 282/410 (68%), Gaps = 9/410 (2%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWR---KSMTEKERAVITDLSKCD 62
KE+ L ++EE+A ++ ++E E+ E F NF DW+ K + VI D KCD
Sbjct: 331 KEVDLPPESEELAGWFGALLETEHAADEVFQKNFFGDWQAVLKDHPPRNGIVIKDFDKCD 390
Query: 63 FRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLF 122
FR M +F + ++K+M+ EKK IK+ ++Y CT+DG EK+GNFRIEPPGLF
Sbjct: 391 FRPMFDFFEAEKAKKKSMTAAEKKAIKEAKSKDEEKYTACTMDGRPEKVGNFRIEPPGLF 450
Query: 123 RGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQ 182
RGRG+HPK GK K R++ EDI IN +++ +P P KW +++HD VTWLASW ENV
Sbjct: 451 RGRGKHPKKGKHKYRLRPEDITINIGQNAPIPVPNIPGKWGKIQHDQTVTWLASWKENVN 510
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
G KY+ L S LKG+ D QK+E AR+L K +++IRE+Y D K+K RQRA A+YF
Sbjct: 511 GNFKYVFLAAGSSLKGQSDMQKFEKARELKKHVDRIREDYTRDLKNKTSADRQRATAMYF 570
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
ID+LALRAGNEK ED+ADTVGCCSLR EHI L P + FDFLGKDSIRYYN V
Sbjct: 571 IDRLALRAGNEKGEDEADTVGCCSLRYEHIMLEP-----PNKLIFDFLGKDSIRYYNVVE 625
Query: 303 VEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
VE ++FKN+++F + K D LFDR++T LNKHL+ M+GL+AKVFRTYNASIT Q+Q
Sbjct: 626 VEPQIFKNIRIFKGDGKSEGDALFDRVSTGGLNKHLNSYMKGLSAKVFRTYNASITFQKQ 685
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
L+E D +K+ AYNRANR VA+LCNHQ+SV K+HD SMG L +++
Sbjct: 686 LDENTPADADITQKLAAYNRANRMVAILCNHQKSVSKNHDASMGKLGDQL 735
>gi|395145800|gb|AFN53340.1| DNA topoisomerase 1, partial [Crematogaster sp. ss_AUS2]
Length = 267
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ M+E ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMSESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145706|gb|AFN53293.1| DNA topoisomerase 1, partial [Crematogaster dahlii]
Length = 267
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/253 (80%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GREMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLAKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145752|gb|AFN53316.1| DNA topoisomerase 1, partial [Crematogaster quadriformis]
Length = 267
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAKINDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145672|gb|AFN53276.1| DNA topoisomerase 1, partial [Crematogaster abrupta]
Length = 267
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/253 (80%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLAKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+K+EK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFMQKSEERKAMTKKEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|358372024|dbj|GAA88629.1| topoisomerase I [Aspergillus kawachii IFO 4308]
Length = 889
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/448 (48%), Positives = 293/448 (65%), Gaps = 23/448 (5%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSM--------TEKE 51
M+ G + L DAEE+A F+ M+ ++ F NF D+R + +
Sbjct: 282 MKYDGVPVTLHPDAEEVAGFFGGMLNATQHVENPTFQKNFFMDFRDILKKTGGAKDPKGN 341
Query: 52 RAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
+ I D KCDF+ + AY+ + +E+KA+ EKK++K E +A Y C DG K+K+
Sbjct: 342 KVDIKDFHKCDFQPIFAYYDNQRQEKKALPPAEKKRLKAEKDAQEAPYMYCMWDGRKQKV 401
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN KD+ VPPPP GHKWKEV+HD +
Sbjct: 402 GNFRVEPPALFRGRGEHPKTGRVKSRVQPEQITINIGKDAPVPPPPEGHKWKEVKHDQEG 461
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L I++IR++YQ + K + M
Sbjct: 462 TWLAMWQENINGNYKYVMLAANSDVKGQSDYKKFEKARELKHHIDRIRKDYQKNLKHELM 521
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L P V FDFLG
Sbjct: 522 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLKP-----PNKVVFDFLG 576
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M+GLTAKVFR
Sbjct: 577 KDSIRFYDEVEVDTQVFKNLKIFKKAPKKEGDEIFDRLTTSALNKHLSTYMQGLTAKVFR 636
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M + AEK+ AYN ANR VA+LCNH+R+V SH M + E+
Sbjct: 637 TYNASHTMSTLLKD-MKATGNIAEKVKAYNDANRRVAILCNHKRTVAASHANQMEKMSER 695
Query: 411 ISNKR-------KQVKDAERALKDAKKA 431
I R +Q+ D E +LK K A
Sbjct: 696 IKGLRYQRWRLKQQMLDLEPSLKKKKGA 723
>gi|395145840|gb|AFN53360.1| DNA topoisomerase 1, partial [Crematogaster kelleri]
Length = 267
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|145229165|ref|XP_001388891.1| DNA topoisomerase 1 [Aspergillus niger CBS 513.88]
gi|134054991|emb|CAK36999.1| unnamed protein product [Aspergillus niger]
Length = 884
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/448 (48%), Positives = 292/448 (65%), Gaps = 23/448 (5%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSM--------TEKE 51
M+ G + L DAEE+A F+ M+ ++ F NF D+R + +
Sbjct: 277 MKYDGIPVTLHPDAEEVAGFFGGMLNATQHVENPTFQKNFFMDFRDILKKTGGAKDPKGN 336
Query: 52 RAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
+ I D KCDF+ + AY+ + +E+KA+ EKK++K E +A Y C DG K+K+
Sbjct: 337 KVDIKDFHKCDFQPIFAYYDNQRQEKKALPPAEKKRLKAEKDAQEAPYMFCMWDGRKQKV 396
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN KD+ VPPPP GHKWKEV+HD +
Sbjct: 397 GNFRVEPPALFRGRGEHPKTGRVKSRVQPEQITINIGKDAPVPPPPEGHKWKEVKHDQEG 456
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L I +IR++YQ + K + M
Sbjct: 457 TWLAMWQENINGNYKYVMLAANSDVKGQSDYKKFEKARELKHHIGRIRKDYQKNLKHELM 516
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L P V FDFLG
Sbjct: 517 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLKP-----PNKVVFDFLG 571
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M+GLTAKVFR
Sbjct: 572 KDSIRFYDEVEVDAQVFKNLKIFKKAPKKEGDEIFDRLTTSALNKHLSAYMQGLTAKVFR 631
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M + AEK+ AYN ANR VA+LCNH+R+V SH M + E+
Sbjct: 632 TYNASHTMSTLLKD-MKATGNIAEKVKAYNDANRKVAILCNHKRTVAASHANQMEKMSER 690
Query: 411 ISNKR-------KQVKDAERALKDAKKA 431
I R +Q+ D E +LK K A
Sbjct: 691 IKGLRYQRWRLKQQMLDLEPSLKKKKGA 718
>gi|350638054|gb|EHA26410.1| hypothetical protein ASPNIDRAFT_206081 [Aspergillus niger ATCC
1015]
Length = 884
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 219/448 (48%), Positives = 292/448 (65%), Gaps = 23/448 (5%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSM--------TEKE 51
M+ G + L DAEE+A F+ M+ ++ F NF D+R + +
Sbjct: 277 MKYDGIPVTLHPDAEEVAGFFGGMLNATQHVENPTFQKNFFMDFRDILKKTGGAKDPKGN 336
Query: 52 RAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
+ I D KCDF+ + AY+ + +E+KA+ EKK++K E +A Y C DG K+K+
Sbjct: 337 KVDIKDFHKCDFQPIFAYYDNQRQEKKALPPAEKKRLKAEKDAQEAPYMFCMWDGRKQKV 396
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN KD+ VPPPP GHKWKEV+HD +
Sbjct: 397 GNFRVEPPALFRGRGEHPKTGRVKSRVQPEQITINIGKDAPVPPPPEGHKWKEVKHDQEG 456
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L I +IR++YQ + K + M
Sbjct: 457 TWLAMWQENINGNYKYVMLAANSDVKGQSDYKKFEKARELKHHIGRIRKDYQKNLKHELM 516
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L P V FDFLG
Sbjct: 517 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLKP-----PNKVVFDFLG 571
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M+GLTAKVFR
Sbjct: 572 KDSIRFYDEVEVDAQVFKNLKIFKKAPKKEGDEIFDRLTTSALNKHLSAYMQGLTAKVFR 631
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M + AEK+ AYN ANR VA+LCNH+R+V SH M + E+
Sbjct: 632 TYNASHTMSTLLKD-MKATGNIAEKVKAYNDANRKVAILCNHKRTVAASHANQMEKMSER 690
Query: 411 ISNKR-------KQVKDAERALKDAKKA 431
I R +Q+ D E +LK K A
Sbjct: 691 IKGLRYQRWRLKQQMLDLEPSLKKKKGA 718
>gi|395145754|gb|AFN53317.1| DNA topoisomerase 1, partial [Crematogaster nigropilosa]
Length = 267
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/253 (80%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAKINDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEETQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPSGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPSGHKWKEVRHDSNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|363750300|ref|XP_003645367.1| hypothetical protein Ecym_3036 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889001|gb|AET38550.1| Hypothetical protein Ecym_3036 [Eremothecium cymbalariae
DBVPG#7215]
Length = 660
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 257/639 (40%), Positives = 360/639 (56%), Gaps = 66/639 (10%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE----KERAVITDLSK 60
GK ++L +AEE+A F+A ++E ++ F NF D+ + + K ++ K
Sbjct: 63 GKAVELPPEAEEVAGFFAALLESDHAKNPVFQRNFFNDFLEVLKRYGGAKNGVEVSSFDK 122
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KM Y + E+RK +S +EKK++K E + + + + C +DG KE++GNFRIEPP
Sbjct: 123 CDFSKMFEYLQLQREQRKQLSPQEKKQLKLEKDQLEEPFKYCYLDGRKEQVGNFRIEPPD 182
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV ED+++N KD+ +P PP GHKW E+RHDN V WL W EN
Sbjct: 183 LFRGRGAHPKTGKLKRRVYPEDVVLNMDKDAAIPDPPAGHKWGEIRHDNTVQWLCMWREN 242
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ L +S KG D++K+E AR+L K I+ IR +Y+ KSK M RQ AVA
Sbjct: 243 ISNSFKYVRLAANSSQKGMSDFKKFEKARELKKYIDIIRSDYRRSLKSKVMLERQIAVAT 302
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK ED+ADTVGCCSLR EH+ L P+ V FDFLGKDSIRYY E
Sbjct: 303 YLIDVFALRAGGEKSEDEADTVGCCSLRYEHVTLK-----PPFTVIFDFLGKDSIRYYQE 357
Query: 301 VPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+K+VFKNL +F K+ LFDRL+ S+LNKHL M GLTAKVFRTYNAS T+Q
Sbjct: 358 VEVDKQVFKNLTIFKRPPKQPGHQLFDRLDPSILNKHLQNYMPGLTAKVFRTYNASKTMQ 417
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVK 419
QL+ L+ + S EKI+ YN ANRAVA+LCNHQR++ + H SM EK+ + Q
Sbjct: 418 DQLD-LIPNEGSVTEKIVRYNAANRAVAILCNHQRTLGRGHAASMQKANEKLEEYQWQKI 476
Query: 420 DAERAL---------KDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIAL 470
++A+ K+ K E K +T +++ A+ + V E ++E+ K
Sbjct: 477 RYKKAILQLDESELKKNPKYFKEIKDLTKEEQMAIHK--------RVIEREREKYKRKFT 528
Query: 471 GTSKLNYLDPR--ISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDW-QKYETARKLAKS 527
++ D ++ + L SW ++V + EK + Q+ ET + K
Sbjct: 529 RENEKRKFDKEELLTDSQLKSWLDDVD--------------ELEKQYAQELETDEIVLKP 574
Query: 528 INKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
E +A + E RI ++ L KD++ TV + ++ +I
Sbjct: 575 TLLNVEKLKAQVEKLEQRIATSSIQL-------------KDKEDNSTVALSTSKISYIDP 621
Query: 588 H--------EEKDEKKIYNKTQRAKFRWAIDMATADFVF 618
+KI+ K R KF+WAI+ A ++ F
Sbjct: 622 RLSVVFCKKYNVPLEKIFTKALREKFKWAIESADENWRF 660
>gi|395145878|gb|AFN53379.1| DNA topoisomerase 1, partial [Crematogaster tenuicula]
Length = 267
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAKIHDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|15240492|ref|NP_200341.1| DNA topoisomerase 1 [Arabidopsis thaliana]
gi|267146|sp|P30181.1|TOP1_ARATH RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|16558|emb|CAA40763.1| topoisomerase I [Arabidopsis thaliana]
gi|9758162|dbj|BAB08547.1| DNA topoisomerase I [Arabidopsis thaliana]
gi|332009229|gb|AED96612.1| DNA topoisomerase 1 [Arabidopsis thaliana]
gi|445137|prf||1908437A topoisomerase I
Length = 916
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 236/495 (47%), Positives = 321/495 (64%), Gaps = 22/495 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ + EE+AT +A M E +Y TK F NF DWR+ + +K VI L CDF
Sbjct: 396 GKPVDLTIEQEEVATMFAVMRETDYYTKPQFRENFWNDWRRLLGKKH--VIQKLDDCDFT 453
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + +++ E++K MS EEKK +K+E ++Y +DG KEKIGNFR+EPPGLFRG
Sbjct: 454 PIYEWHLEEKEKKKQMSTEEKKALKEEKMKQEEKYMWAVVDGVKEKIGNFRVEPPGLFRG 513
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMGKLK+R+ +I +N K + +P P G +WKEV+HDN VTWLA W + +
Sbjct: 514 RGEHPKMGKLKKRIHPCEITLNIGKGAPIPECPIAGERWKEVKHDNTVTWLAFWADPINP 573
Query: 184 -QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L S LKG D +KYE AR L I+ IR Y ++ +K++++RQ AVA Y
Sbjct: 574 KEFKYVFLGAGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVKMRQIAVATYL 633
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+V +++ P + FDFLGKDSI+Y N V
Sbjct: 634 IDKLALRAGNEKDDDEADTVGCCTLKVGNVECIP-----PNKIKFDFLGKDSIQYVNTVE 688
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+K + F K +DDLFD L+TS LN HL EL+ GLTAKVFRTYNASITL + L
Sbjct: 689 VEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEML 748
Query: 363 N-ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
+ E D D + +KI+ Y +AN+ VA++CNHQR+V K+H + L +I ++ +K+
Sbjct: 749 SQETKDGDVT--QKIVVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKEL 806
Query: 422 ERALKDAKKAGESKAMTDKKKTAL-------GRLKEQLLKLEVQETD---KEENKTIALG 471
+ L AKK +D KK ++ +Q K+E E D KE+ KT+ALG
Sbjct: 807 KTNLDRAKKGKPPLEGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALG 866
Query: 472 TSKLNYLDPRISVTW 486
TSK+NYLDPRI+V W
Sbjct: 867 TSKINYLDPRITVAW 881
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L S LKG D +KYE AR L I+ IR Y ++ +
Sbjct: 560 TVTWLAFWADPINPKEFKYVFLGAGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTA 619
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K++++RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 620 KDVKMRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 664
>gi|334188419|ref|NP_001190543.1| DNA topoisomerase 1 [Arabidopsis thaliana]
gi|332009230|gb|AED96613.1| DNA topoisomerase 1 [Arabidopsis thaliana]
Length = 933
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 236/495 (47%), Positives = 321/495 (64%), Gaps = 22/495 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ + EE+AT +A M E +Y TK F NF DWR+ + +K VI L CDF
Sbjct: 396 GKPVDLTIEQEEVATMFAVMRETDYYTKPQFRENFWNDWRRLLGKKH--VIQKLDDCDFT 453
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + +++ E++K MS EEKK +K+E ++Y +DG KEKIGNFR+EPPGLFRG
Sbjct: 454 PIYEWHLEEKEKKKQMSTEEKKALKEEKMKQEEKYMWAVVDGVKEKIGNFRVEPPGLFRG 513
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMGKLK+R+ +I +N K + +P P G +WKEV+HDN VTWLA W + +
Sbjct: 514 RGEHPKMGKLKKRIHPCEITLNIGKGAPIPECPIAGERWKEVKHDNTVTWLAFWADPINP 573
Query: 184 -QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L S LKG D +KYE AR L I+ IR Y ++ +K++++RQ AVA Y
Sbjct: 574 KEFKYVFLGAGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVKMRQIAVATYL 633
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+V +++ P + FDFLGKDSI+Y N V
Sbjct: 634 IDKLALRAGNEKDDDEADTVGCCTLKVGNVECIP-----PNKIKFDFLGKDSIQYVNTVE 688
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+K + F K +DDLFD L+TS LN HL EL+ GLTAKVFRTYNASITL + L
Sbjct: 689 VEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEML 748
Query: 363 N-ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
+ E D D + +KI+ Y +AN+ VA++CNHQR+V K+H + L +I ++ +K+
Sbjct: 749 SQETKDGDVT--QKIVVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKEL 806
Query: 422 ERALKDAKKAGESKAMTDKKKTAL-------GRLKEQLLKLEVQETD---KEENKTIALG 471
+ L AKK +D KK ++ +Q K+E E D KE+ KT+ALG
Sbjct: 807 KTNLDRAKKGKPPLEGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALG 866
Query: 472 TSKLNYLDPRISVTW 486
TSK+NYLDPRI+V W
Sbjct: 867 TSKINYLDPRITVAW 881
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L S LKG D +KYE AR L I+ IR Y ++ +
Sbjct: 560 TVTWLAFWADPINPKEFKYVFLGAGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTA 619
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K++++RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 620 KDVKMRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 664
>gi|367017033|ref|XP_003683015.1| hypothetical protein TDEL_0G04370 [Torulaspora delbrueckii]
gi|359750678|emb|CCE93804.1| hypothetical protein TDEL_0G04370 [Torulaspora delbrueckii]
Length = 760
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 255/641 (39%), Positives = 362/641 (56%), Gaps = 71/641 (11%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLSK 60
GK + L AEE+A FYA +++ ++T F NF D+ + + E + I SK
Sbjct: 164 GKPVDLPPKAEEVAGFYAALLQSDHTKNPVFQRNFFDDFLEVLKECGGTLNGIEIKVFSK 223
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KM Y+ + E+RK +S +EKK+++ E E + + Y C +DG KE++GNFRIEPPG
Sbjct: 224 CDFNKMFEYYELQKEQRKQLSSQEKKQLRLEKEKLEEPYKFCELDGRKEQVGNFRIEPPG 283
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV ED+++N ++ +PP P G W E+RHDN V WLA W EN
Sbjct: 284 LFRGRGAHPKTGKLKRRVYPEDVVLNLDNEAPIPPLPEGQNWGEIRHDNTVQWLAMWREN 343
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ +S L G D++K+E AR+L I+ IR++Y + KSK M RQ++VA+
Sbjct: 344 ISNSFKYVRFAANSSLNGLSDFKKFEKARQLKDHIDPIRKDYTKNLKSKIMLERQKSVAI 403
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y E
Sbjct: 404 YLIDVFALRAGGEKSEDEADTVGCCSLRYEHVTLK-----PPTTVIFDFLGKDSIRFYQE 458
Query: 301 VPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+K+VFKNL +F K+ LFDRL+ S+LNKHL M GLTAKVFRTYNAS T+Q
Sbjct: 459 VEVDKQVFKNLAIFKRPPKQPGHQLFDRLDPSILNKHLQHYMPGLTAKVFRTYNASKTMQ 518
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN------ 413
QL+ L+ + + AEK+L YN ANR VA+LCNHQRSV K+H +S+ +KI
Sbjct: 519 DQLD-LIPNEGTVAEKLLKYNAANRTVAILCNHQRSVTKTHAQSVQKASDKIRELEWQKI 577
Query: 414 ---------KRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEE 464
+KQ+K+ + ++ + + M K+ + R E+ K ++ DK +
Sbjct: 578 RLKKAILQLDKKQMKERPKFFEEVEDITKEDEMAIHKRI-IEREVEKCHKKFARDNDKRK 636
Query: 465 NKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIMLNPSSKLK-GEKDWQKYETARK 523
+ + L + + L W + V+ Q LN +LK G + + T K
Sbjct: 637 FENMEL-----------LKESDLKEWLDKVEEQ----RLNFEQELKTGVVELKMASTVEK 681
Query: 524 LAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVE 583
L K I K+ + RI+ A+ L +K+E+ ++G +
Sbjct: 682 LDKQIEKL-----------DQRIQNSAIQL-----------RDKEENSQVSLGTSKINYI 719
Query: 584 HIQLHEEKDEK------KIYNKTQRAKFRWAIDMATADFVF 618
+L +K KI+ K+ R KF+WA++ ++ F
Sbjct: 720 DPRLSVVFCKKYGVPIEKIFTKSLREKFKWAVESVDENWRF 760
>gi|395145770|gb|AFN53325.1| DNA topoisomerase 1, partial [Crematogaster cf. gavapiga BBB-2012]
Length = 267
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/253 (81%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKGAFNNNFFHDWREVMTESERAKINDLFKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145802|gb|AFN53341.1| DNA topoisomerase 1, partial [Crematogaster sp. ss_AUS3]
Length = 267
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHXYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145846|gb|AFN53363.1| DNA topoisomerase 1, partial [Crematogaster madagascariensis]
gi|395145864|gb|AFN53372.1| DNA topoisomerase 1, partial [Crematogaster sp. ss21_avy]
Length = 267
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFV KSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145678|gb|AFN53279.1| DNA topoisomerase 1, partial [Crematogaster ampullaris]
Length = 267
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKTSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/92 (88%), Positives = 87/92 (94%), Gaps = 2/92 (2%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ D
Sbjct: 178 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRED 235
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 570
WKSKEMRIRQRAVALYFIDKLALRAGNEKDED
Sbjct: 236 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|169766616|ref|XP_001817779.1| DNA topoisomerase 1 [Aspergillus oryzae RIB40]
gi|83765634|dbj|BAE55777.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391864823|gb|EIT74117.1| DNA topoisomerase I [Aspergillus oryzae 3.042]
Length = 881
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/427 (50%), Positives = 286/427 (66%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSMTEKERAV----- 54
M+ G + L DAEE+A F+ M+ ++ F NF D++ + + A
Sbjct: 274 MKYDGVPVNLHPDAEEVAGFFGSMLNATQHVENPTFQKNFFMDFKDILKKTGGATDSKGN 333
Query: 55 ---ITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I D SKCDF+ + AY+ K E+K + EKK++K E +A Y C DG K+K+
Sbjct: 334 KVDIKDFSKCDFQPIFAYYDMKRLEKKNLPPAEKKRLKAEKDAEEAPYMYCMWDGRKQKV 393
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN KD+ VPPPP GH+WKEV+HD +
Sbjct: 394 GNFRVEPPSLFRGRGEHPKTGRVKSRVQPEQITINIGKDAPVPPPPEGHRWKEVKHDQEG 453
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I+KIR++Y+ + K++ M
Sbjct: 454 TWLAMWQENINGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIDKIRKDYKKNMKNELM 513
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L P V FDFLG
Sbjct: 514 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLKP-----PNKVVFDFLG 568
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F ++ KK D++FDRL TS LNKHLS M+GLTAKVFR
Sbjct: 569 KDSIRFYDEVEVDAQVFKNLKIFKKSPKKEGDEIFDRLTTSALNKHLSNYMQGLTAKVFR 628
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M + AEK+ AYN ANR VA+LCNH+R+V SH M + E+
Sbjct: 629 TYNASHTMSTLLKD-MKATGTIAEKVKAYNDANRQVAILCNHKRTVTASHANQMEKMGER 687
Query: 411 ISNKRKQ 417
I R Q
Sbjct: 688 IKGLRYQ 694
>gi|407411603|gb|EKF33593.1| DNA topoisomerase IB, large subunit [Trypanosoma cruzi marinkellei]
Length = 667
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/434 (49%), Positives = 291/434 (67%), Gaps = 7/434 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+E KL+ + EE+AT +A M EH+Y E F NF WR+ + ++ I L CDF
Sbjct: 74 GREFKLTPEEEEVATMFAVMREHDYYRNEIFRRNFFSSWREILDRRQHP-IRRLELCDFE 132
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + +++ E++ + +KEEKK+++ E E + Y C DG KE++ NFR+EPPGLFRG
Sbjct: 133 PIYQWHLREREKKLSRTKEEKKQLRLEAEKEAEPYKWCVWDGKKEQVANFRVEPPGLFRG 192
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HP MGKLK+RV+ EDI IN + S +P PP GH+WKEV HD+ VTWLA W +++ G
Sbjct: 193 RGQHPMMGKLKKRVEPEDITINIDEFSPIPKPPEGHRWKEVLHDHNVTWLAMWRDSILGS 252
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+ML PSS +KG+ D K+E AR+L +++IR Y D++S+E+ QRAVA+YFID
Sbjct: 253 FKYVMLAPSSAIKGQSDMLKFEKARELKNHVDEIRRCYVEDFESREVMKAQRAVAMYFID 312
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALR GNEK D+ADTVGCCSLRVEHI+L + VV FDFLGKDSIRY NE V
Sbjct: 313 KLALRVGNEKGSDEADTVGCCSLRVEHIELKPDN-----VVKFDFLGKDSIRYENEAVVL 367
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
RV++ L+ F + K+ DD+FD + +VLN HL M GL+AKVFRTYNASITL + E
Sbjct: 368 PRVYELLRRFTKGKEPGDDIFDMITPTVLNDHLKSFMAGLSAKVFRTYNASITLDRWFKE 427
Query: 365 -LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+ P S A+K+ +N+AN VA+LCNHQ+S+ K+H M L +K S R + +R
Sbjct: 428 KPVPPSASVADKLAYFNKANTEVAILCNHQKSISKNHHNLMHQLTKKSSYTRTIIDALKR 487
Query: 424 ALKDAKKAGESKAM 437
A + KK +A+
Sbjct: 488 AQETTKKKSLEQAV 501
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 81/105 (77%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W +++ G KY+ML PSS +KG+ D K+E AR+L +++IR Y D++S+
Sbjct: 238 NVTWLAMWRDSILGSFKYVMLAPSSAIKGQSDMLKFEKARELKNHVDEIRRCYVEDFESR 297
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
E+ QRAVA+YFIDKLALR GNEK D+ADTVGCCSLRVEHI+L
Sbjct: 298 EVMKAQRAVAMYFIDKLALRVGNEKGSDEADTVGCCSLRVEHIEL 342
>gi|407929552|gb|EKG22369.1| DNA topoisomerase I [Macrophomina phaseolina MS6]
Length = 854
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 218/427 (51%), Positives = 285/427 (66%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSMTEKERAVITD-- 57
M+ G + L +DAEE+ATF+ M+ + + F NF D+++ + + A D
Sbjct: 247 MKYDGVPVTLHKDAEEVATFFGSMLNSTHNVENPTFQKNFFHDFKEVLDKTGHATGPDGK 306
Query: 58 ------LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
KCDFR ++A+F + E +KA+ EKK +K + Y C DG K+K+
Sbjct: 307 KIKIEKFDKCDFRDIYAHFEAQREAKKALPAAEKKALKAAKDEAEAPYMYCMWDGRKQKV 366
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK GK+K+RV E I IN KD+KVP PPPGHKWKEV+HD
Sbjct: 367 GNFRVEPPSLFRGRGEHPKTGKVKKRVMPEQITINIGKDAKVPSPPPGHKWKEVKHDQTG 426
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y D KS+ M
Sbjct: 427 TWLAMWQENINGAYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYTRDLKSEVM 486
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+Y IDK ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 487 ADRQRATAVYLIDKFALRAGNEKGEDEADTVGCCSLKYEHVTLKP-----PNKVVFDFLG 541
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNK+LS M GLTAKVFR
Sbjct: 542 KDSIRFYDEVEVDPQVFKNLKIFKKAPKKDGDEIFDRLTTSGLNKYLSNYMTGLTAKVFR 601
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ Q L + M + AEK+ YN ANR VA+LCNH+R+V SH + ++EK
Sbjct: 602 TYNASYTMAQLLKQ-MKSTGTIAEKVKDYNEANRKVAILCNHKRTVAASHTTQIEKMQEK 660
Query: 411 ISNKRKQ 417
I+ R Q
Sbjct: 661 INGLRYQ 667
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 79/103 (76%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y D KS+ M
Sbjct: 427 TWLAMWQENINGAYKYVMLAANSDIKGQSDFKKFEKARELKKHIDRIRKDYTRDLKSEVM 486
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y IDK ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 487 ADRQRATAVYLIDKFALRAGNEKGEDEADTVGCCSLKYEHVTL 529
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Query: 407 LKEKISNKRKQVKD-AERALKDAKKAG----ESKAMT-DKKKTALGRLKEQLLKLEVQET 460
+K K +R +V D ER K K+G E K ++ +K ++ + +L++++ +Q
Sbjct: 736 MKAKELQERLEVADEMERKFKKENKSGKIEAEGKGVSIEKLESKVEQLQQRIETATIQME 795
Query: 461 DKEENKTIALGTSKLNYLDPRISVTW 486
DK+ NK +ALGTSK+NY+DPR++V +
Sbjct: 796 DKDNNKEVALGTSKINYIDPRLTVVF 821
>gi|395145726|gb|AFN53303.1| DNA topoisomerase 1, partial [Crematogaster inflata]
gi|395145750|gb|AFN53315.1| DNA topoisomerase 1, partial [Crematogaster modiglianii]
gi|395145760|gb|AFN53320.1| DNA topoisomerase 1, partial [Crematogaster onusta]
Length = 267
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLAKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKTSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/92 (88%), Positives = 87/92 (94%), Gaps = 2/92 (2%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ D
Sbjct: 178 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRED 235
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 570
WKSKEMRIRQRAVALYFIDKLALRAGNEKDED
Sbjct: 236 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145874|gb|AFN53377.1| DNA topoisomerase 1, partial [Crematogaster subnuda]
Length = 267
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/253 (80%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EE+ATFYARM++H+YTTK FN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GREMKLSEETEEVATFYARMLDHDYTTKSVFNINFFNDWREVMTESERAKIVDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|395145898|gb|AFN53389.1| DNA topoisomerase 1, partial [Crematogaster meijerei]
Length = 267
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSSIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+ I+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQLIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/92 (86%), Positives = 86/92 (93%), Gaps = 2/92 (2%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+ I+KIR Y+ D
Sbjct: 178 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQLIDKIRAEYRED 235
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 570
WKSKEMRIRQRAVALYFIDKLALRAGNEKDED
Sbjct: 236 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|297796403|ref|XP_002866086.1| TOP1BETA [Arabidopsis lyrata subsp. lyrata]
gi|297311921|gb|EFH42345.1| TOP1BETA [Arabidopsis lyrata subsp. lyrata]
Length = 922
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 237/495 (47%), Positives = 320/495 (64%), Gaps = 22/495 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ + EE+AT +A M E +Y K F NF DWR + K VI L CDF
Sbjct: 400 GKPVDLTTEQEEVATMFAVMRETDYYNKPQFRENFWNDWRALLGRKH--VIQKLDDCDFT 457
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + +++ E++K MS EEKK +K+E ++Y +DG KEKIGNFR+EPPGLFRG
Sbjct: 458 PIYEWHLEEKEKKKQMSTEEKKALKEEKLKQEEKYMWAVVDGVKEKIGNFRVEPPGLFRG 517
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENV-Q 182
RGEHPKMGKLK+R++ +I +N K + +P P G +WKEV+HDN VTWLA W + + Q
Sbjct: 518 RGEHPKMGKLKKRIRPCEITLNIGKGAPIPECPIAGERWKEVKHDNTVTWLAFWVDPINQ 577
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L PSS +KG D +KYE AR L I+ IR Y ++ +K++ +Q AVA Y
Sbjct: 578 KEFKYVFLAPSSAMKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVTTKQIAVATYL 637
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+V +++ P + FDFLGKDSI+Y N V
Sbjct: 638 IDKLALRAGNEKDDDEADTVGCCTLKVGNVECIP-----PNKIKFDFLGKDSIQYVNTVE 692
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+K + F K +DDLFD L+TS LN HL EL+ GLTAKVFRTYNASITL + L
Sbjct: 693 VEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEML 752
Query: 363 N-ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
+ E D D + +KI+ Y +AN+ VA++CNHQR+V KSH + L +I ++ +K+
Sbjct: 753 SQETKDGDLN--QKIVVYQKANKEVAIICNHQRTVSKSHGAQIEKLTARIEELKEGLKEL 810
Query: 422 ERALKDAKKAGESKAMTDKKKTAL-------GRLKEQLLKLEVQETD---KEENKTIALG 471
+ L AKK +D KK ++ +Q K+E E D KE+ KT+ALG
Sbjct: 811 KTNLDWAKKGKPPLEGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALG 870
Query: 472 TSKLNYLDPRISVTW 486
TSK+NYLDPRI+V W
Sbjct: 871 TSKINYLDPRITVAW 885
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 76/105 (72%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + Q + KY+ L PSS +KG D +KYE AR L I+ IR Y ++ +
Sbjct: 564 TVTWLAFWVDPINQKEFKYVFLAPSSAMKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTA 623
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K++ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 624 KDVTTKQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 668
>gi|395145922|gb|AFN53401.1| DNA topoisomerase 1, partial [Stenamma dyscheres]
Length = 267
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/253 (80%), Positives = 233/253 (92%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+EMKLS++ EEIATFYARM++H+YTTK AFN NF +DWR++MTE ERA ITDLSKC+F+
Sbjct: 15 GREMKLSEETEEIATFYARMLDHDYTTKAAFNNNFFQDWRENMTESERAKITDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++HAYF+QKSEERKAM+KEEK+KIK++NE + KEYG C+IDGH EKIGNF+IEPPGLFRG
Sbjct: 75 EIHAYFLQKSEERKAMTKEEKQKIKEKNEEVQKEYGFCSIDGHTEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S VP PP GHKWKEVRHD+ VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVVPEDVLINCSKGSNVPKPPAGHKWKEVRHDSNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (425), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 79/88 (89%), Positives = 85/88 (96%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSK
Sbjct: 180 NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSK 239
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDED 570
EMRIRQRAVALYFIDKLALRAGNEKDED
Sbjct: 240 EMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|238483363|ref|XP_002372920.1| topoisomerase I [Aspergillus flavus NRRL3357]
gi|220700970|gb|EED57308.1| topoisomerase I [Aspergillus flavus NRRL3357]
Length = 881
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/427 (50%), Positives = 286/427 (66%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSMTEKERAV----- 54
M+ G + L DAEE+A F+ M+ ++ F NF D++ + + A
Sbjct: 274 MKYDGVPVNLHPDAEEVAGFFGSMLNATQHVENPTFQKNFFMDFKDILKKTGGATDSKGN 333
Query: 55 ---ITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I D SKCDF+ + AY+ K E+K + EKK++K E +A Y C DG K+K+
Sbjct: 334 KVDIKDFSKCDFQPIFAYYDMKRLEKKNLPPAEKKRLKAEKDAEEAPYMYCMWDGRKQKV 393
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN KD+ VPPPP GH+WKEV+HD +
Sbjct: 394 GNFRVEPPSLFRGRGEHPKTGRVKSRVQPEQITINIGKDAPVPPPPEGHRWKEVKHDQEG 453
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I+KIR++Y+ + K++ M
Sbjct: 454 TWLAMWQENINGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIDKIRKDYKKNMKNELM 513
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L P V FDFLG
Sbjct: 514 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLKP-----PNKVVFDFLG 568
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F ++ KK D++FDRL TS LNKHLS M+GLTAKVFR
Sbjct: 569 KDSIRFYDEVEVDAQVFKNLKIFKKSPKKEGDEIFDRLTTSALNKHLSNYMQGLTAKVFR 628
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M + AEK+ AYN ANR VA+LCNH+R+V SH M + E+
Sbjct: 629 TYNASHTMSTLLKD-MKATGTIAEKVKAYNDANRQVAILCNHKRTVTASHANQMEKMGER 687
Query: 411 ISNKRKQ 417
I R Q
Sbjct: 688 IKGLRYQ 694
>gi|407851024|gb|EKG05158.1| DNA topoisomerase IB, large subunit [Trypanosoma cruzi]
Length = 599
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/431 (49%), Positives = 290/431 (67%), Gaps = 9/431 (2%)
Query: 9 KLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHA 68
KL+ + EE+AT +A M EH+Y E F NF WR+ + ++ I L CDF ++
Sbjct: 13 KLTPEEEEVATMFAVMREHDYYRNEIFRRNFFSSWREILDRRQHP-IRRLELCDFEPIYQ 71
Query: 69 YFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEH 128
+ +++ E++ + +KEEKK+++ E E + Y C DG KE++ NFR+EPPGLFRGRG+H
Sbjct: 72 WHLREREKKLSRTKEEKKQLRLEAEKEAEPYKWCVWDGKKEQVANFRVEPPGLFRGRGQH 131
Query: 129 PKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYI 188
P MGKLK+RV+ EDI IN + S +P PP GH+WKEV H++ VTWLA W +++ G KY+
Sbjct: 132 PMMGKLKKRVEPEDITINIDEFSPIPKPPEGHRWKEVLHEHNVTWLAMWRDSILGSFKYV 191
Query: 189 MLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLAL 248
ML PSS +KG+ D K+E AR+L +++IR Y D++S+E+ QRAVA+YFIDKLAL
Sbjct: 192 MLAPSSAIKGQSDMLKFEKARELKNHVDEIRRCYIEDFESRELMKAQRAVAMYFIDKLAL 251
Query: 249 RAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKP-YVVCFDFLGKDSIRYYNEVPVEKRV 307
R GNEK D+ADTVGCCSLRVEHI+L KP YVV FDFLGKDSIRY NE V RV
Sbjct: 252 RVGNEKGSDEADTVGCCSLRVEHIEL------KPDYVVKFDFLGKDSIRYENEAVVLPRV 305
Query: 308 FKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE-LM 366
++ L+ F + KK DD+FD + +VLN HL M GL+AKVFRTYNASITL + E +
Sbjct: 306 YELLRRFTKGKKTGDDIFDMITPTVLNDHLKSFMAGLSAKVFRTYNASITLDRWFKEKPV 365
Query: 367 DPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALK 426
P S A+K+ +N+AN VA+LCNHQ+S+ K+H M L +K S R + +RA +
Sbjct: 366 PPSASVADKLAYFNKANTEVAILCNHQKSISKNHHNLMHQLTQKSSYTRTIIDALKRAQE 425
Query: 427 DAKKAGESKAM 437
KK +A+
Sbjct: 426 TTKKKSLEQAV 436
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 81/105 (77%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W +++ G KY+ML PSS +KG+ D K+E AR+L +++IR Y D++S+
Sbjct: 173 NVTWLAMWRDSILGSFKYVMLAPSSAIKGQSDMLKFEKARELKNHVDEIRRCYIEDFESR 232
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
E+ QRAVA+YFIDKLALR GNEK D+ADTVGCCSLRVEHI+L
Sbjct: 233 ELMKAQRAVAMYFIDKLALRVGNEKGSDEADTVGCCSLRVEHIEL 277
>gi|395145784|gb|AFN53332.1| DNA topoisomerase 1, partial [Crematogaster rothneyi]
Length = 267
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKIIDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKTSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/92 (88%), Positives = 87/92 (94%), Gaps = 2/92 (2%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ D
Sbjct: 178 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRED 235
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 570
WKSKEMRIRQRAVALYFIDKLALRAGNEKDED
Sbjct: 236 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145756|gb|AFN53318.1| DNA topoisomerase 1, partial [Crematogaster nosibeensis]
Length = 267
Score = 424 bits (1089), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/253 (80%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GH+WKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHRWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEK+WQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKNWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 80/92 (86%), Positives = 87/92 (94%), Gaps = 2/92 (2%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEK+WQKYETARKLA+SI+KIR Y+ D
Sbjct: 178 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKNWQKYETARKLAQSIDKIRAEYRED 235
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 570
WKSKEMRIRQRAVALYFIDKLALRAGNEKDED
Sbjct: 236 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145926|gb|AFN53403.1| DNA topoisomerase 1, partial [Vollenhovia emeryi]
Length = 267
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/253 (80%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK FN NF +DWR+ MTE ERA I DL KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTVFNNNFFQDWREVMTESERAKINDLFKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG C+IDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCSIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPAGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|340520224|gb|EGR50461.1| predicted protein [Trichoderma reesei QM6a]
Length = 914
Score = 423 bits (1088), Expect = e-115, Method: Compositional matrix adjust.
Identities = 223/429 (51%), Positives = 283/429 (65%), Gaps = 21/429 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMI---EHEYTTKEAFNTNFMKDW----RKSMTEKE----RA 53
G+ + L+ +AEE+ATF+ M+ + F NF D+ +KS K+ +
Sbjct: 302 GQPVTLAPEAEEVATFWVAMMTPASSHHLENPTFRKNFFADFSEYIKKSGGAKDAKGNKV 361
Query: 54 VITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGN 113
I L KCDF K+H Y+ K E +K M+KEEK +K E + + Y C DG K+K+GN
Sbjct: 362 DIKSLDKCDFSKIHEYWTAKIEAKKNMTKEEKAALKAEKDKLEAPYLYCMWDGRKQKVGN 421
Query: 114 FRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTW 173
FR+EPP LFRGRGEHPK GK+K RV E I IN K++KVP PP GHKWK V+HD + TW
Sbjct: 422 FRVEPPSLFRGRGEHPKTGKVKARVMPEQITINIGKEAKVPEPPAGHKWKAVQHDQKATW 481
Query: 174 LASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRI 233
LA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I+KIR +Y D KS+ M
Sbjct: 482 LAMWQENINGAYKYVMLGAASDVKGQSDFKKFEKARELKKHIDKIRRDYTKDLKSEVMAD 541
Query: 234 RQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGK 292
RQRA A+Y IDKLALRAGNEKD E++ADTVGCCSL+ EHI L P V FDFLGK
Sbjct: 542 RQRATAMYLIDKLALRAGNEKDTENEADTVGCCSLKYEHISLQP-----PDQVTFDFLGK 596
Query: 293 DSIRYYNEVPVEKRVFKNLQLFVENKK-GSDDLFDRLNTSVLNKHLSELMEGLTAKVFRT 351
DSIRY V+ +VFKNL+LF + K DDLFDRLNTS LNKHL+ M GLTAKVFRT
Sbjct: 597 DSIRYNETARVDPQVFKNLKLFKKAPKTDGDDLFDRLNTSQLNKHLNSYMPGLTAKVFRT 656
Query: 352 YNASITLQQQLNEL-MDPDF--SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLK 408
YNAS T+ + L EL DP + AE++ YN NR VA+LCNH+R+V SH++ M L
Sbjct: 657 YNASYTMSELLKELGKDPRSRGTIAERVKLYNDCNRKVAILCNHKRTVGASHEQQMQKLG 716
Query: 409 EKISNKRKQ 417
++I R Q
Sbjct: 717 DRIKGLRYQ 725
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I+KIR +Y D KS+
Sbjct: 479 ATWLAMWQENINGAYKYVMLGAASDVKGQSDFKKFEKARELKKHIDKIRRDYTKDLKSEV 538
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLH 588
M RQRA A+Y IDKLALRAGNEKD E++ADTVGCCSL+ EHI L
Sbjct: 539 MADRQRATAMYLIDKLALRAGNEKDTENEADTVGCCSLKYEHISLQ 584
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
++ ++ E++ LE Q D++ NK +AL TSK+NY+DPR++V +
Sbjct: 836 ASIDKIDERIRILETQAEDRDGNKEVALSTSKINYIDPRLTVVF 879
>gi|344233086|gb|EGV64959.1| hypothetical protein CANTEDRAFT_121194 [Candida tenuis ATCC 10573]
Length = 748
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/417 (50%), Positives = 284/417 (68%), Gaps = 13/417 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE--KERAVITDLSKCD 62
G + L Q+AEE+A F+ ++E ++ F +NF KD+++ + E I D
Sbjct: 154 GTPVNLPQEAEEVAGFFGALVETDHGKNPVFQSNFFKDFQQVLKECGGCNVEIEKFEHLD 213
Query: 63 FRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLF 122
F KM+A+F Q E++K MSKEEK++IK++ E + Y C ++G KEKIGNFRIEPPGLF
Sbjct: 214 FSKMYAHFEQLKEDKKKMSKEEKREIKEDKERQEEPYRTCLLNGRKEKIGNFRIEPPGLF 273
Query: 123 RGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQ 182
RGRG HPK G+LKRRV ED+ +N S+ + VPPPP GH W +V+HDN VTWLA W EN+
Sbjct: 274 RGRGAHPKTGRLKRRVFPEDVTLNLSEGAPVPPPPEGHSWGDVKHDNTVTWLAMWKENIA 333
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
KY+ +S +KG D++K+ETAR L I IR++Y KS+ M+ RQ A A Y
Sbjct: 334 DSFKYVRFAQNSSVKGLSDFKKFETARNLKHHIESIRKDYTQSLKSELMQERQMATATYL 393
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
ID ALRAG EK +D+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y EV
Sbjct: 394 IDIFALRAGGEKGDDEADTVGCCSLRYEHVTLR-----PPNTVIFDFLGKDSIRFYQEVE 448
Query: 303 VEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
V+K+VFKNL++F + K+ DDLFDR++ +LNK M+GLTAKVFRTYNAS T+Q Q
Sbjct: 449 VDKQVFKNLKIFKKPPKQPGDDLFDRISPPLLNKKFQTYMKGLTAKVFRTYNASKTMQDQ 508
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
L+ L+ + + AEK++ +N ANR VA+LCNHQR+V KSH GN +KI++K +++
Sbjct: 509 LD-LIKNEGTVAEKVVRFNAANRTVAILCNHQRTVSKSH----GNSVQKINDKLREL 560
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 70/105 (66%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W EN+ KY+ +S +KG D++K+ETAR L I IR++Y KS+
Sbjct: 321 TVTWLAMWKENIADSFKYVRFAQNSSVKGLSDFKKFETARNLKHHIESIRKDYTQSLKSE 380
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A Y ID ALRAG EK +D+ADTVGCCSLR EH+ L
Sbjct: 381 LMQERQMATATYLIDIFALRAGGEKGDDEADTVGCCSLRYEHVTL 425
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 374 EKILAYNRANRAVAVLCNHQRSVPKSHDKSMGN-LKEKISNKRKQVKDAERALKDAKKAG 432
EKIL + A ++++ +S D+ N LKE++ ++ + + L K
Sbjct: 602 EKILERTKEQVAKKFERDNEKLKAESKDQLTANDLKERMQKVKELQAEFKIELASGKPEI 661
Query: 433 ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ +K K+ + ++++++L + Q DKE+N ++LGTSK+NY+DPR++V +
Sbjct: 662 KKSVTVEKLKSQVEQIEQRILNTQFQLKDKEDNSEVSLGTSKMNYIDPRLTVVF 715
>gi|395145890|gb|AFN53385.1| DNA topoisomerase 1, partial [Crematogaster madecassa]
Length = 267
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/253 (80%), Positives = 231/253 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAKINDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVR+D VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPSGHKWKEVRYDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPSGHKWKEVRYDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|384495064|gb|EIE85555.1| hypothetical protein RO3G_10265 [Rhizopus delemar RA 99-880]
Length = 767
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/437 (49%), Positives = 292/437 (66%), Gaps = 10/437 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMT-EKERAVITDLS 59
M+ GK + LS +AEE+A+F+A ++E E+ F NF DW + + + I + S
Sbjct: 172 MKYDGKPITLSPEAEEVASFFAALLETEHAQNPVFQKNFFNDWLQILKKDPNNPDIKEFS 231
Query: 60 KCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPP 119
KCDFR + F Q+ E +K MSK+EK K+K+E I + + +DG KEK+GNFRIEPP
Sbjct: 232 KCDFRPIFEKFQQEKETKKQMSKQEKLKLKEEKAKIEEPFMTAIVDGRKEKVGNFRIEPP 291
Query: 120 GLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTE 179
GLFRGRG HPK GKLK RV E + +N ++K+P PP GHKW + HD TWLA+W E
Sbjct: 292 GLFRGRGSHPKTGKLKTRVLPEQVTLNLGLNAKIPEPPKGHKWGGIVHDQTATWLATWKE 351
Query: 180 NVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVA 239
NV G +KY+ L +S KG+ D QK+E AR+L K + IRENY + K K RQRA A
Sbjct: 352 NVNGSIKYVFLAATSAWKGQSDMQKFEKARELKKYVKTIRENYTRELKDKISETRQRATA 411
Query: 240 LYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYN 299
+Y ID+LALRAGNEK ED+ADTVGCCSLR EHI+L P ++ FDFLGKDSIRY N
Sbjct: 412 MYLIDRLALRAGNEKGEDEADTVGCCSLRYEHIELE-----PPNILHFDFLGKDSIRYQN 466
Query: 300 EVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+ +V+KN+++F + +FDRL T+ LNK+L+ M+GL+AKVFRTYNASIT Q
Sbjct: 467 TVEVDPQVYKNIKIFKKQVGPEHMIFDRLTTTGLNKYLNTCMKGLSAKVFRTYNASITFQ 526
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVK 419
+QL +L + + + +K+L+YNRANR VAVLCNHQ++ K+H++ + + ++I + Q
Sbjct: 527 EQLEKLTNENDTIPDKLLSYNRANREVAVLCNHQKAASKNHEQQISKMGDRIRAIKYQRM 586
Query: 420 DAERALKD----AKKAG 432
+ L D AKK+G
Sbjct: 587 KLRKTLYDLDPKAKKSG 603
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 77/105 (73%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+ TWLA+W ENV G +KY+ L +S KG+ D QK+E AR+L K + IRENY + K K
Sbjct: 342 TATWLATWKENVNGSIKYVFLAATSAWKGQSDMQKFEKARELKKYVKTIRENYTRELKDK 401
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y ID+LALRAGNEK ED+ADTVGCCSLR EHI+L
Sbjct: 402 ISETRQRATAMYLIDRLALRAGNEKGEDEADTVGCCSLRYEHIEL 446
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 14/87 (16%)
Query: 402 KSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALG--RLKEQLLKLEVQE 459
K+ L EK++N+RK E+KA +KT L ++ E++ ++ Q
Sbjct: 661 KATDLLLEKLANERKAA------------TIEAKASMTAEKTILKIEKMDERIAAIKTQT 708
Query: 460 TDKEENKTIALGTSKLNYLDPRISVTW 486
TD+EENK IALGTSKLNY+DPRISVTW
Sbjct: 709 TDREENKQIALGTSKLNYIDPRISVTW 735
>gi|395145738|gb|AFN53309.1| DNA topoisomerase 1, partial [Crematogaster longispina]
Length = 267
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/253 (81%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKTAFNNNFFHDWREVMTESERAKIHDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKASNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 81/92 (88%), Positives = 87/92 (94%), Gaps = 2/92 (2%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ D
Sbjct: 178 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRED 235
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 570
WKSKEMRIRQRAVALYFIDKLALRAGNEKDED
Sbjct: 236 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|395145746|gb|AFN53313.1| DNA topoisomerase 1, partial [Crematogaster sp. ortho.TH01]
Length = 267
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/253 (80%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN+NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAAFNSNFFHDWREVMTESERAKIHDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERK M+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKTMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+ I++IR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQLIDQIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 85/127 (66%), Positives = 100/127 (78%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+ I++IR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQLIDQIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|159490590|ref|XP_001703256.1| DNA topoisomerase I [Chlamydomonas reinhardtii]
gi|158280180|gb|EDP05938.1| DNA topoisomerase I [Chlamydomonas reinhardtii]
Length = 586
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/506 (45%), Positives = 321/506 (63%), Gaps = 31/506 (6%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ D EE+AT +A M E +Y K+ F NF + +++ + + VI DL KCDF
Sbjct: 56 GKPVDLTPDQEEVATMFAVMKETDYMNKKVFLDNFWEGFKEVLGKGH--VIKDLKKCDFT 113
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + + + E +K +SKEEK +IK E + +Y V +DG E +GNFR+EPPGLFRG
Sbjct: 114 PIYDWHMAQREAKKGISKEEKDRIKKEKDEKEAKYKVAYVDGRPEPVGNFRVEPPGLFRG 173
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMGK+K+RV DI IN ++ VP P PG WKEV+HD+ VTWLA W + +
Sbjct: 174 RGEHPKMGKIKKRVYPRDITINIGENEPVPEHPYPGQTWKEVKHDHTVTWLAYWKDTIST 233
Query: 184 Q-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L +S K + D KYE ARKL + I +R+NY+ DW S + R RQ VA+YF
Sbjct: 234 KDYKYVFLGATSTFKADSDLAKYEKARKLKEIIVDVRKNYERDWDSSDQRKRQMGVAMYF 293
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAG+EKDED+ADTVGCC+L+VE+I++ + V FDFLGKDSIRY N V
Sbjct: 294 IDKLALRAGHEKDEDEADTVGCCTLKVENIEIMGDNK-----VKFDFLGKDSIRYENIVE 348
Query: 303 VEKRVFKNLQLF------VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASI 356
V+ RV+KNL+ F + K+ D LF+ + LNK L +M+GL+ KVFRTYNASI
Sbjct: 349 VDPRVYKNLEKFKRIDHTGKRKQQGDQLFETFDAQDLNKELKNIMDGLSVKVFRTYNASI 408
Query: 357 TLQQQLN--ELMDPDFSEAEKI----LAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
L + L+ E S A+ + + Y+ AN+ VA+LCNHQRSVPK+H M ++EK
Sbjct: 409 VLDRLLSEWEATKKGHSTAQTVDQKKVDYDIANKEVAILCNHQRSVPKTHTNQMEKIQEK 468
Query: 411 ISNKRKQVKDAERAL----------KDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQET 460
++ K++ + E L K A K G + + + + K+ + K+E+Q
Sbjct: 469 LAGMNKELAELEDELRAAQKGKAENKKANKCGAPTILPWALNSKIDKKKQAIAKVELQAR 528
Query: 461 DKEENKTIALGTSKLNYLDPRISVTW 486
KE+ KT+ALGTSK+NY+DPRI+V W
Sbjct: 529 SKEDLKTVALGTSKINYMDPRITVAW 554
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 78/106 (73%), Gaps = 1/106 (0%)
Query: 483 SVTWLASWTENVQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L +S K + D KYE ARKL + I +R+NY+ DW S
Sbjct: 220 TVTWLAYWKDTISTKDYKYVFLGATSTFKADSDLAKYEKARKLKEIIVDVRKNYERDWDS 279
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+ R RQ VA+YFIDKLALRAG+EKDED+ADTVGCC+L+VE+I++
Sbjct: 280 SDQRKRQMGVAMYFIDKLALRAGHEKDEDEADTVGCCTLKVENIEI 325
>gi|395145872|gb|AFN53376.1| DNA topoisomerase 1, partial [Crematogaster subcircularis]
Length = 267
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/253 (80%), Positives = 229/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLAKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQKSEERKAM+KEEK+KIK++NE KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKSEERKAMTKEEKQKIKEKNEETQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSK S +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKTSNIPKPPTGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 168 bits (426), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/92 (88%), Positives = 87/92 (94%), Gaps = 2/92 (2%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQVKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ D
Sbjct: 178 DP--NVTWLASWTENIQGQVKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRED 235
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 570
WKSKEMRIRQRAVALYFIDKLALRAGNEKDED
Sbjct: 236 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED 267
>gi|294658456|ref|XP_460799.2| DEHA2F09988p [Debaryomyces hansenii CBS767]
gi|202953144|emb|CAG89140.2| DEHA2F09988p [Debaryomyces hansenii CBS767]
Length = 789
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/410 (50%), Positives = 277/410 (67%), Gaps = 9/410 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKE--RAVITDLSKCD 62
GK + L +AEE+A F+ M E ++ F NF +D+ K + + I D + D
Sbjct: 195 GKPVDLPLEAEEVAGFFGAMAETDHAKNPTFQKNFFEDFCKVLKDAGGCNVNIIDFHRMD 254
Query: 63 FRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLF 122
F KMHA+F +++K +SK+EKK IK E + + Y C ++GHKE++GNFRIEPPGLF
Sbjct: 255 FSKMHAHFEMLRDQKKLLSKDEKKAIKAEKDKFEEPYKTCLLNGHKEQVGNFRIEPPGLF 314
Query: 123 RGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQ 182
RGRG HPK GKLKRRV ED+ +N S+ K+P PP GHKW EVRHDN V+WLA W EN+
Sbjct: 315 RGRGAHPKTGKLKRRVMPEDVTLNLSEGCKIPEPPQGHKWAEVRHDNTVSWLAMWKENIA 374
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
KY+ +S +KG D++K+ET+RKL I++IR++Y K M+ RQ A A Y
Sbjct: 375 DSFKYVRFAANSSIKGLSDFKKFETSRKLRYHIDEIRKDYTKMLKDPLMQNRQMATACYL 434
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
ID ALRAG EK +D+ADTVGCCSLR EHI L P V FDFLGKDSIR+Y EV
Sbjct: 435 IDIFALRAGGEKGDDEADTVGCCSLRYEHITLKP-----PNKVIFDFLGKDSIRFYQEVE 489
Query: 303 VEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
VEK+VFKNL++F + K+ DDLFDR++ +LNK M+GLTAKVFRTYNAS T+Q Q
Sbjct: 490 VEKQVFKNLRIFKKPPKQPGDDLFDRISPPLLNKQFQNYMKGLTAKVFRTYNASKTMQDQ 549
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
L +L+ + + AEK++ +N ANR VA+LCNHQR+V K+H S+ + +K+
Sbjct: 550 L-DLIPNEGTVAEKVVKFNAANRTVAILCNHQRTVSKTHGSSVQKIHDKL 598
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 71/105 (67%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V+WLA W EN+ KY+ +S +KG D++K+ET+RKL I++IR++Y K
Sbjct: 362 TVSWLAMWKENIADSFKYVRFAANSSIKGLSDFKKFETSRKLRYHIDEIRKDYTKMLKDP 421
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A Y ID ALRAG EK +D+ADTVGCCSLR EHI L
Sbjct: 422 LMQNRQMATACYLIDIFALRAGGEKGDDEADTVGCCSLRYEHITL 466
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%)
Query: 406 NLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEEN 465
+L+EK+ + K+ LK K + +K K+ + L ++L Q DKE+N
Sbjct: 676 DLEEKMEKVNELEKEYAEELKTGKPQIKKSVTVEKLKSQVDTLTNRILNTTFQLKDKEDN 735
Query: 466 KTIALGTSKLNYLDPRISVTW 486
++LGTSK+NY+DPR++V +
Sbjct: 736 SEVSLGTSKMNYIDPRLTVMF 756
>gi|395145682|gb|AFN53281.1| DNA topoisomerase 1, partial [Crematogaster cf. depressa BBB-2012]
gi|395145820|gb|AFN53350.1| DNA topoisomerase 1, partial [Crematogaster fraxatrix]
Length = 267
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/253 (80%), Positives = 230/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLTKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+ KSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFLLKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 87/127 (68%), Positives = 101/127 (79%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|67515943|ref|XP_657857.1| hypothetical protein AN0253.2 [Aspergillus nidulans FGSC A4]
gi|40746970|gb|EAA66126.1| hypothetical protein AN0253.2 [Aspergillus nidulans FGSC A4]
gi|259489529|tpe|CBF89874.1| TPA: Topoisomerase I [Source:UniProtKB/TrEMBL;Acc:Q875K2]
[Aspergillus nidulans FGSC A4]
Length = 871
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/427 (49%), Positives = 288/427 (67%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSMTEKERAV----- 54
M+ G + L +AEE+A F+ M+ ++T F NF D+++ + + A
Sbjct: 264 MKYDGIPVDLHPEAEEVAGFFGSMLNSTQHTENPTFQKNFFADFKEILKKTGGAKDQKGN 323
Query: 55 ---ITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I + SKCDF+ + Y+ + +E+KA+ EKK++K E +A Y C DG K+K+
Sbjct: 324 KVDIKEFSKCDFQPIFQYYDAQRQEKKALPPAEKKRLKAEKDAQEAPYMYCMWDGRKQKV 383
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN K+++VPPPP GHKWKEV+HD +
Sbjct: 384 GNFRVEPPSLFRGRGEHPKTGRVKARVQPEQITINIGKEARVPPPPEGHKWKEVKHDQEG 443
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I +IR++YQ + K + M
Sbjct: 444 TWLAMWQENINGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIARIRKDYQKNLKHELM 503
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L P V FDFLG
Sbjct: 504 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLKP-----PNKVIFDFLG 558
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS+ M GLTAKVFR
Sbjct: 559 KDSIRFYDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSQYMPGLTAKVFR 618
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ + L M + AEK+ AYN ANR VA+LCNH+R+V +H M + E+
Sbjct: 619 TYNASHTMSELLKS-MHATGNNAEKVKAYNDANRKVAILCNHKRTVGAAHAHQMEKMSER 677
Query: 411 ISNKRKQ 417
I +R Q
Sbjct: 678 IKGQRYQ 684
>gi|395145924|gb|AFN53402.1| DNA topoisomerase 1, partial [Metapone madagascarica]
Length = 267
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/253 (80%), Positives = 229/253 (90%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK FNTNF DWR+ MTE ERA I DL+KC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKAVFNTNFFHDWREVMTESERAKIIDLAKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYFVQK EERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFVQKGEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMGKLK+RV ED++INCSKDS +P PP GHKWKEVRHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKMGKLKKRVLPEDVLINCSKDSNMPKPPAGHKWKEVRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKY+MLNPSSKLKGEKDWQKYETARKLA+ I+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 VKYVMLNPSSKLKGEKDWQKYETARKLAQLIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALRAGNEKDED 257
KLALRAGNEKDED
Sbjct: 255 KLALRAGNEKDED 267
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/127 (67%), Positives = 100/127 (78%), Gaps = 1/127 (0%)
Query: 445 LGRLKEQLLKLEVQ-ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIML 503
+G+LK+++L +V K+ N K + +VTWLASWTEN+QGQVKY+ML
Sbjct: 141 MGKLKKRVLPEDVLINCSKDSNMPKPPAGHKWKEVRHDPNVTWLASWTENIQGQVKYVML 200
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 563
NPSSKLKGEKDWQKYETARKLA+ I+KIR Y+ DWKSKEMRIRQRAVALYFIDKLALRA
Sbjct: 201 NPSSKLKGEKDWQKYETARKLAQLIDKIRAEYREDWKSKEMRIRQRAVALYFIDKLALRA 260
Query: 564 GNEKDED 570
GNEKDED
Sbjct: 261 GNEKDED 267
>gi|154309521|ref|XP_001554094.1| hypothetical protein BC1G_07231 [Botryotinia fuckeliana B05.10]
Length = 912
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/421 (51%), Positives = 280/421 (66%), Gaps = 22/421 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSMT--------EKERAVI 55
G + LS ++EEIA F+ M+ + + F NF KD+ S+ E + I
Sbjct: 305 GIPLTLSLESEEIAGFFGAMLNSTHNVENPTFQKNFFKDFTDSVKKTGGAKDKEGNKVAI 364
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKK---IKDENEAITKEYGVCTIDGHKEKIG 112
D SK DF+ + Y+ KS ERKA S EKK +KDE EA Y C DG KE +G
Sbjct: 365 KDFSKLDFKPIFEYYDGKSTERKARSAAEKKAEKALKDEAEA---PYKTCIWDGRKEDVG 421
Query: 113 NFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVT 172
NFR+EPPGLFRGRGEHPK GK+K RV E I IN KD+ VP PP GHKWK ++HDN+ T
Sbjct: 422 NFRVEPPGLFRGRGEHPKTGKVKLRVTPEQITINIGKDATVPSPPEGHKWKAIQHDNKAT 481
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA W EN+ G KY+ML S +KG+ D++K+E AR+L + I++IR++Y D K++ M
Sbjct: 482 WLAMWQENINGAYKYVMLAAKSSIKGQSDFKKFEKARELKEHIDRIRKDYTQDLKAELMA 541
Query: 233 IRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L P V FDFLG
Sbjct: 542 DRQRATAVYLIDKFALRAGNEKDAENEAETVGCCSLKYEHVTLKP-----PNTVIFDFLG 596
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK DD+FDRLNT+ LNKHL+ M GL+AKVFR
Sbjct: 597 KDSIRFYDEVTVDPQVFKNLKIFKKAPKKNGDDIFDRLNTTQLNKHLTNYMPGLSAKVFR 656
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L +L + D S EKI YN NR VA+LCNH+R+V SH+ ++ + +
Sbjct: 657 TYNASWTMSDLLKKLKNSDISMQEKIKLYNDCNRKVAILCNHKRTVGASHEAAIEKMDDA 716
Query: 411 I 411
+
Sbjct: 717 V 717
>gi|27752875|gb|AAO19447.1| topoisomerase I [Emericella nidulans]
Length = 871
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/427 (49%), Positives = 288/427 (67%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSMTEKERAV----- 54
M+ G + L +AEE+A F+ M+ ++T F NF D+++ + + A
Sbjct: 264 MKYDGIPVDLHPEAEEVAGFFGSMLNSTQHTENPTFQKNFFADFKEILKKTGGAKDQKGN 323
Query: 55 ---ITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I + SKCDF+ + Y+ + +E+KA+ EKK++K E +A Y C DG K+K+
Sbjct: 324 KVDIKEFSKCDFQPIFQYYDAQRQEKKALPPAEKKRLKAEKDAQEAPYMYCMWDGRKQKV 383
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN K+++VPPPP GHKWKEV+HD +
Sbjct: 384 GNFRVEPPPLFRGRGEHPKTGRVKARVQPEQITINIGKEARVPPPPEGHKWKEVKHDQEG 443
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I +IR++YQ + K + M
Sbjct: 444 TWLAMWQENINGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIARIRKDYQKNLKHELM 503
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L P V FDFLG
Sbjct: 504 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLKP-----PNKVIFDFLG 558
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS+ M GLTAKVFR
Sbjct: 559 KDSIRFYDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSQYMPGLTAKVFR 618
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ + L M + AEK+ AYN ANR VA+LCNH+R+V +H M + E+
Sbjct: 619 TYNASHTMSELLKS-MHATGNNAEKVKAYNDANRKVAILCNHKRTVGAAHAHQMEKMSER 677
Query: 411 ISNKRKQ 417
I +R Q
Sbjct: 678 IKGQRYQ 684
>gi|347838289|emb|CCD52861.1| similar to DNA topoisomerase I [Botryotinia fuckeliana]
Length = 896
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/421 (51%), Positives = 280/421 (66%), Gaps = 22/421 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWRKSMT--------EKERAVI 55
G + LS ++EEIA F+ M+ + + F NF KD+ S+ E + I
Sbjct: 289 GIPLTLSLESEEIAGFFGAMLNSTHNVENPTFQKNFFKDFTDSVKKTGGAKDKEGNKVAI 348
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKK---IKDENEAITKEYGVCTIDGHKEKIG 112
D SK DF+ + Y+ KS ERKA S EKK +KDE EA Y C DG KE +G
Sbjct: 349 KDFSKLDFKPIFEYYDGKSTERKARSAAEKKAEKALKDEAEA---PYKTCIWDGRKEDVG 405
Query: 113 NFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVT 172
NFR+EPPGLFRGRGEHPK GK+K RV E I IN KD+ VP PP GHKWK ++HDN+ T
Sbjct: 406 NFRVEPPGLFRGRGEHPKTGKVKLRVTPEQITINIGKDATVPSPPEGHKWKAIQHDNKAT 465
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA W EN+ G KY+ML S +KG+ D++K+E AR+L + I++IR++Y D K++ M
Sbjct: 466 WLAMWQENINGAYKYVMLAAKSSIKGQSDFKKFEKARELKEHIDRIRKDYTQDLKAELMA 525
Query: 233 IRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L P V FDFLG
Sbjct: 526 DRQRATAVYLIDKFALRAGNEKDAENEAETVGCCSLKYEHVTLKP-----PNTVIFDFLG 580
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK DD+FDRLNT+ LNKHL+ M GL+AKVFR
Sbjct: 581 KDSIRFYDEVTVDPQVFKNLKIFKKAPKKNGDDIFDRLNTTQLNKHLTNYMPGLSAKVFR 640
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L +L + D S EKI YN NR VA+LCNH+R+V SH+ ++ + +
Sbjct: 641 TYNASWTMSDLLKKLKNSDISMQEKIKLYNDCNRKVAILCNHKRTVGASHEAAIEKMDDA 700
Query: 411 I 411
+
Sbjct: 701 V 701
>gi|291001795|ref|XP_002683464.1| predicted protein [Naegleria gruberi]
gi|284097093|gb|EFC50720.1| predicted protein [Naegleria gruberi]
Length = 568
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 225/489 (46%), Positives = 311/489 (63%), Gaps = 14/489 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KL + EE+AT YA M+E +Y K+ FN NF W++ + + I L+KCDF
Sbjct: 55 GKPVKLDPEQEEVATMYASMLESDYIQKKQFNENFWAAWKELLGKNH--TIKSLAKCDFS 112
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
K+ + + + E + + EEKK K+ Y +DG KEK+ F+IEPPGLFRG
Sbjct: 113 KIWEHLLTEKETKLNRTSEEKKAEKELKAKFEDAYKYALVDGRKEKVQQFKIEPPGLFRG 172
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LK+R+Q EDI IN + VPPPP GHKW V +N V W+A++ + + +
Sbjct: 173 RGTHPKMGMLKKRIQPEDITINIGRLEDVPPPPTGHKWGGVVSNNTVLWVAAFKDAINNK 232
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+ S +K D+ KY+TAR L I KIRE+Y+ W K+ RQ VA+YFID
Sbjct: 233 NKYVQFASGSSMKAMNDYLKYQTARSLKDCIEKIREDYKQQWTEKQESDRQLGVAIYFID 292
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALR GNEK DE++ADTVGCCSLRVEH+ L P + FDFLGKDSIRY N V V
Sbjct: 293 KLALRVGNEKDDEEEADTVGCCSLRVEHVSL-----VAPSSIKFDFLGKDSIRYENTVEV 347
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+K ++ F+E KK SD LF ++N S LN HL ME L+AKVFRTYNASITL ++L
Sbjct: 348 EKEVYKCVKGFIEGKKKSDMLFHKINPSKLNDHLKSYMEKLSAKVFRTYNASITLDRELK 407
Query: 364 EL---MDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKD 420
+L + D S AEK+ +N ANR VA+LCNHQR+ PK+ D S+ +++KI ++ ++
Sbjct: 408 KLEREITSDMSVAEKVSIFNSANRQVAILCNHQRAAPKTFDTSVETMEKKIEDQETYLER 467
Query: 421 AERALKDAKKAGESKAMTDKKKTALGR---LKEQLLKLEVQETDKEENKTIALGTSKLNY 477
++ALK+ K + ++ + +K+++ L+ ++ K ENKT++L TS+ NY
Sbjct: 468 LQQALKEPPKKPTQPLLPKTPESISSKIEAIKKKIDDLKQEKKMKIENKTVSLTTSRTNY 527
Query: 478 LDPRISVTW 486
DPRI++ W
Sbjct: 528 CDPRITIAW 536
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V W+A++ + + + KY+ S +K D+ KY+TAR L I KIRE+Y+ W K
Sbjct: 218 TVLWVAAFKDAINNKNKYVQFASGSSMKAMNDYLKYQTARSLKDCIEKIREDYKQQWTEK 277
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQL 587
+ RQ VA+YFIDKLALR GNEK DE++ADTVGCCSLRVEH+ L
Sbjct: 278 QESDRQLGVAIYFIDKLALRVGNEKDDEEEADTVGCCSLRVEHVSL 323
>gi|156844437|ref|XP_001645281.1| hypothetical protein Kpol_1037p19 [Vanderwaltozyma polyspora DSM
70294]
gi|156115941|gb|EDO17423.1| hypothetical protein Kpol_1037p19 [Vanderwaltozyma polyspora DSM
70294]
Length = 799
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/412 (50%), Positives = 278/412 (67%), Gaps = 11/412 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLSK 60
G+ + L AEE+A F+A ++ ++ F NF D+++ + E + +
Sbjct: 202 GQAVDLPPTAEEVAGFFAALLHTDHAKNTVFQKNFFTDFKEVLKEVGGTLNGIKLEKFEY 261
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KMH YF + E+RK +S +EKK+++ E E + + C +DG +E++GNFR+EPP
Sbjct: 262 CDFSKMHEYFEIQREQRKKLSPQEKKQLRLEKEEQEEPFKFCELDGRREQVGNFRVEPPD 321
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV EDI++N +++ +P P GHKW E++HDN V WLA W EN
Sbjct: 322 LFRGRGAHPKTGKLKRRVYPEDIVLNLDRNAPIPAVPEGHKWGEIKHDNTVQWLAMWREN 381
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ L +S LKG+ D++K+E AR+L K I+ IR++Y+ + KSK M RQ+AVA+
Sbjct: 382 ISNSFKYVRLAANSSLKGQSDFKKFEKARELKKYIDSIRKDYRTNLKSKLMLERQKAVAI 441
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK +D+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y E
Sbjct: 442 YLIDVFALRAGGEKSDDEADTVGCCSLRYEHVTLK-----PPNTVIFDFLGKDSIRFYQE 496
Query: 301 VPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+K+VFKNL +F KK D LFDRL+ +LNKHL M GLTAKVFRTYNAS T+Q
Sbjct: 497 VEVDKQVFKNLAIFKRAPKKPGDQLFDRLDPPILNKHLQNYMPGLTAKVFRTYNASKTMQ 556
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
QL+ +++ S AEK+L YN ANR VA+LCNHQRSV K H +++ EKI
Sbjct: 557 DQLDLIVNKG-SVAEKMLRYNAANRTVAILCNHQRSVGKGHAEAVRKANEKI 607
>gi|366992774|ref|XP_003676152.1| hypothetical protein NCAS_0D02090 [Naumovozyma castellii CBS 4309]
gi|342302018|emb|CCC69790.1| hypothetical protein NCAS_0D02090 [Naumovozyma castellii CBS 4309]
Length = 753
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/412 (51%), Positives = 278/412 (67%), Gaps = 11/412 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDW----RKSMTEKERAVITDLSK 60
GK + L +AEE+A FY M+E ++ F NF +D+ + + K I K
Sbjct: 156 GKPVDLPPEAEEVAGFYGAMLETDHAKNPVFQKNFFQDFLEVLKTAGGTKNGITIEKFEK 215
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KM YF EE+K ++ +EKK+I+ + E ++Y C +DG KE++GNF++EPPG
Sbjct: 216 CDFTKMFDYFELLKEEKKKLTSQEKKQIRLDREKAEEKYKFCELDGRKEQVGNFKVEPPG 275
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRVQ EDII+N KD+ +P P GH W E+R+DN V WLA W EN
Sbjct: 276 LFRGRGAHPKTGKLKRRVQPEDIILNLDKDAPIPEAPEGHHWGEIRNDNSVQWLAMWREN 335
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ VKY+ L +S LKG+ D++K+E AR+L I+ IR++Y+ KS+ M RQ+AVA+
Sbjct: 336 IFNSVKYVRLAANSSLKGQSDYKKFEKARQLKDHIDAIRKDYKKQLKSEVMLERQKAVAI 395
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y E
Sbjct: 396 YLIDVFALRAGGEKSEDEADTVGCCSLRYEHVTLK-----PPNTVVFDFLGKDSIRFYQE 450
Query: 301 VPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+K+VFKNL++F K+ LFDRL+ S LNKHL M GL+AKVFRTYNAS T+Q
Sbjct: 451 VEVDKKVFKNLKIFKRPPKQPGHQLFDRLDPSTLNKHLQNYMPGLSAKVFRTYNASKTMQ 510
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
QL+ L+ + S AEK+L YN ANR VA+LCNHQR+V K H +S+ +KI
Sbjct: 511 DQLD-LIPNEGSVAEKLLRYNAANRTVAILCNHQRTVTKGHAQSVQKANDKI 561
>gi|307104172|gb|EFN52427.1| hypothetical protein CHLNCDRAFT_36846 [Chlorella variabilis]
Length = 532
Score = 420 bits (1080), Expect = e-114, Method: Compositional matrix adjust.
Identities = 244/504 (48%), Positives = 327/504 (64%), Gaps = 30/504 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G + L+ + EE+ATF+A M E +Y K+ F NF + +R+ + VI L KCDF
Sbjct: 5 GVPVDLTPEQEEVATFFAVMKETDYMKKDTFLNNFWEGFREVLGHGH--VIKSLDKCDFL 62
Query: 65 KMHAYFVQKSEERKAMSKE-----EKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPP 119
+ + + + E +K +SKE EK+K+K E + +Y +DG +E +GNFR+EPP
Sbjct: 63 PFYNWHMAEREPKKNLSKEGGASQEKEKLKKEKDEAEAKYKYALVDGRQEMVGNFRVEPP 122
Query: 120 GLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWT 178
GLFRGRGEHPKMGK+K+R+ DI IN + +P P G +WKEV+HD VTWLA W
Sbjct: 123 GLFRGRGEHPKMGKIKKRIYPRDITINIGEGVPIPGHPFTGQQWKEVKHDKSVTWLAFWR 182
Query: 179 ENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
+ V + KY+ L +S K E D QKYE ARKL I IR+ Y +W S++ RQ A
Sbjct: 183 DPVNTKEYKYVFLAATSTWKSESDLQKYEKARKLKDFIGGIRDTYTRNWDSRDRAERQMA 242
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
ALYFIDKLALRAG+EKDED+ADTVGCC+L+VE+++ P + FDFLGKDSIRY
Sbjct: 243 TALYFIDKLALRAGHEKDEDEADTVGCCTLKVENVEC-----APPNHIKFDFLGKDSIRY 297
Query: 298 YNEVPVEKRVFKNLQLF-VENKKG-----SDDLFDRLNTSVLNKHLSELMEGLTAKVFRT 351
N V VE +VFKN++LF EN+ G D LF+ + LN L +LMEGL+ KVFRT
Sbjct: 298 ENTVDVEDKVFKNVELFKRENQSGKPKKEGDQLFECFDAQDLNVRLKDLMEGLSVKVFRT 357
Query: 352 YNASITLQQQLNELMDPDFSEAE----KILAYNRANRAVAVLCNHQRSVPKSHDKSMGNL 407
YNASITL + L E + +EAE ++ YNRAN+ VA+LCNHQRSVPK+H+ M L
Sbjct: 358 YNASITLDRLLAEGEEAASAEAETVEGRVADYNRANKEVAILCNHQRSVPKAHENQMEKL 417
Query: 408 KEKISNKRKQVKDAERALKDAK--KAGESKAMTDKKKTALGRLKE---QLLKLEVQETDK 462
+EK+ R++VKD + LK AK K GE + +++ G+L++ QLLK+E+ K
Sbjct: 418 QEKLDAVRQEVKDLQADLKRAKAGKKGEDGKVL-REEVVAGKLEKKQAQLLKMEITAKSK 476
Query: 463 EENKTIALGTSKLNYLDPRISVTW 486
E+ KT+ALGTSK+NYLDPRI+V W
Sbjct: 477 EDLKTVALGTSKINYLDPRITVAW 500
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
SVTWLA W + V + KY+ L +S K E D QKYE ARKL I IR+ Y +W S
Sbjct: 174 SVTWLAFWRDPVNTKEYKYVFLAATSTWKSESDLQKYEKARKLKDFIGGIRDTYTRNWDS 233
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
++ RQ A ALYFIDKLALRAG+EKDED+ADTVGCC+L+VE+++
Sbjct: 234 RDRAERQMATALYFIDKLALRAGHEKDEDEADTVGCCTLKVENVE 278
>gi|398022638|ref|XP_003864481.1| DNA topoisomerase IB, large subunit [Leishmania donovani]
gi|322502716|emb|CBZ37799.1| DNA topoisomerase IB, large subunit [Leishmania donovani]
Length = 635
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/427 (50%), Positives = 290/427 (67%), Gaps = 7/427 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+E K++ + EE+AT +A M EH+Y E F NF + WR+ + +K + I L CDF
Sbjct: 71 GREFKMTPEEEEVATMFAVMKEHDYYRMEVFRRNFFESWRE-ILDKRQHPIRRLELCDFE 129
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + + + E++ + +KEEKK IK++ +A + Y C DG +E++ NFR+EPPGLFRG
Sbjct: 130 PIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEPYRYCVWDGRREQVANFRVEPPGLFRG 189
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HP MGKLK RVQ EDI IN + ++VP PP GHKW V+HD+ VTWLA W ++V G
Sbjct: 190 RGKHPLMGKLKVRVQPEDITINIGETAEVPVPPAGHKWAAVQHDHTVTWLAMWRDSVAGN 249
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+ML PSS +KG+ D K+E ARKL ++ IR +Y D+KS ++ + QRAVA+YFID
Sbjct: 250 MKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEDFKSNDLHVAQRAVAMYFID 309
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
+LALR GNEK ED+ADTVGCCSLRVEHIQL + +V FDFLGKDSIRY N+V V
Sbjct: 310 RLALRVGNEKGEDEADTVGCCSLRVEHIQLMPDN-----IVRFDFLGKDSIRYQNDVAVL 364
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
V+ LQ F K D+FD+LN + LN HL M+GL+AKVFRTYNASITL + E
Sbjct: 365 PEVYALLQRFTRRKSPGTDIFDQLNPTQLNDHLKSFMDGLSAKVFRTYNASITLDRWFKE 424
Query: 365 -LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+DP +S A+K+ +N+AN VA+LCNHQ+SV K+ M L K RK ++ E+
Sbjct: 425 KPVDPKWSTADKLAYFNKANTEVAILCNHQKSVSKNFKLQMMQLTTKSEYTRKTIELLEK 484
Query: 424 ALKDAKK 430
A AKK
Sbjct: 485 AEVTAKK 491
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 83/105 (79%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W ++V G +KY+ML PSS +KG+ D K+E ARKL ++ IR +Y D+KS
Sbjct: 235 TVTWLAMWRDSVAGNMKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEDFKSN 294
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
++ + QRAVA+YFID+LALR GNEK ED+ADTVGCCSLRVEHIQL
Sbjct: 295 DLHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQL 339
>gi|58271538|ref|XP_572925.1| topoisomerase I [Cryptococcus neoformans var. neoformans JEC21]
gi|134115128|ref|XP_773862.1| hypothetical protein CNBH3140 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256490|gb|EAL19215.1| hypothetical protein CNBH3140 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229184|gb|AAW45618.1| topoisomerase I [Cryptococcus neoformans var. neoformans JEC21]
Length = 881
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/415 (52%), Positives = 284/415 (68%), Gaps = 10/415 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWR---KSMTEKERAVITD 57
M+ G + L ++EE+A F+ ++E +Y F NF +D++ + KE +
Sbjct: 282 MKYDGVSLTLPPESEEVAGFFGALLETDYAQDAKFRENFFRDFKAIVEKYPPKEDVKVKK 341
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
L KCDFR M YF ++ E++KA++KEEKK IK E + + Y +DG KEK+GNFR E
Sbjct: 342 LEKCDFRPMFEYFEKEKEKKKALTKEEKKAIKAEKDKLEAPYLYANVDGRKEKVGNFRAE 401
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLF+GRGEHPK G +K R++ EDIIIN K++ +P P +WK ++HDN VTWLA W
Sbjct: 402 PPGLFKGRGEHPKKGTVKNRLRPEDIIINIGKEAPIPVPNIPGQWKGIQHDNTVTWLAHW 461
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
ENV G KY+ L+ S KG+ D K+E AR+L K ++KIR++Y AD KSK M RQRA
Sbjct: 462 KENVNGNAKYVFLSAGSAWKGQSDRAKFEKARELIKHVDKIRKDYTADLKSKVMADRQRA 521
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
ALYFID+LALRAGNEK ED+ADTVGCCSLR EH+ L P + FDFLGKDS+R+
Sbjct: 522 TALYFIDRLALRAGNEKGEDEADTVGCCSLRYEHVTL-----SPPNTIIFDFLGKDSMRF 576
Query: 298 YNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASI 356
+ EV V+ +VFKN++LF + KK DD+FDRL T++LNKHL+ +M GLTAKVFRTYNAS
Sbjct: 577 HQEVEVDPQVFKNIKLFKADPKKKGDDIFDRLTTTLLNKHLNSMMPGLTAKVFRTYNASW 636
Query: 357 TLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
T Q+QL + + AEKI AYN ANR VA+LCNHQ+SV K + S ++KI
Sbjct: 637 TFQEQLKNTPK-NGTVAEKIAAYNTANRDVAILCNHQKSVSKGFEGSFAKAEDKI 690
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 80/105 (76%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W ENV G KY+ L+ S KG+ D K+E AR+L K ++KIR++Y AD KSK
Sbjct: 454 TVTWLAHWKENVNGNAKYVFLSAGSAWKGQSDRAKFEKARELIKHVDKIRKDYTADLKSK 513
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M RQRA ALYFID+LALRAGNEK ED+ADTVGCCSLR EH+ L
Sbjct: 514 VMADRQRATALYFIDRLALRAGNEKGEDEADTVGCCSLRYEHVTL 558
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 407 LKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTA-LGRLKEQLLKLEVQETDKEEN 465
L E++S + + K+ ++ K AKK + T++K A + R+ E++ +VQ D+++
Sbjct: 769 LDERLSEIKAEFKELKKERK-AKKIDAKRGATEEKLLAQVARIDERIATAKVQLQDRDKL 827
Query: 466 KTIALGTSKLNYLDPRISVTW 486
K +ALGTSK+NY+DPR++V W
Sbjct: 828 KDVALGTSKINYIDPRLTVAW 848
>gi|261188450|ref|XP_002620640.1| DNA topoisomerase I [Ajellomyces dermatitidis SLH14081]
gi|239593240|gb|EEQ75821.1| DNA topoisomerase I [Ajellomyces dermatitidis SLH14081]
gi|239609381|gb|EEQ86368.1| DNA topoisomerase I [Ajellomyces dermatitidis ER-3]
Length = 911
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/427 (49%), Positives = 279/427 (65%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDW----RKSMTEKER--- 52
M+ G + L+ +AEE+A F+ M+ + + F NF D+ +KS K+
Sbjct: 304 MKYDGIPITLAPEAEEVAGFFGSMLNSTHNVENPTFQKNFFTDFTAYIKKSGGAKDPNGN 363
Query: 53 -AVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I CDF+ + Y+ E+K + EKK++K E + + Y C DG K+K+
Sbjct: 364 PVAIKSFDSCDFKPIFEYYEAARLEKKNLPAAEKKRLKAEKDELEAPYMYCMWDGRKQKV 423
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK GK+K RV E I IN KD+KVPPPPPGHKWKEV+HD +
Sbjct: 424 GNFRVEPPALFRGRGEHPKTGKVKTRVMPEQITINIGKDAKVPPPPPGHKWKEVKHDQEG 483
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 484 TWLAMWQENINGNYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRKDYKKSLKHELM 543
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 544 SERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLKP-----PSTVIFDFLG 598
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + K+ D++FDRL TS LNKHLS M GLTAKVFR
Sbjct: 599 KDSIRFYDEVEVDPQVFKNLKIFKKAPKREGDEIFDRLTTSALNKHLSNYMPGLTAKVFR 658
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L +L S AEKI YN ANR VA+LCNH+R+V SH M L ++
Sbjct: 659 TYNASYTMATLLKDLKSTG-SIAEKIKDYNDANRKVAILCNHKRTVTASHASQMEKLGDR 717
Query: 411 ISNKRKQ 417
I + Q
Sbjct: 718 IKGLKYQ 724
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 78/103 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 484 TWLAMWQENINGNYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRKDYKKSLKHELM 543
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 544 SERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTL 586
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 7/59 (11%)
Query: 435 KAMTDKKKTALGRLKEQLLKLE-------VQETDKEENKTIALGTSKLNYLDPRISVTW 486
K + K + +L+ QLLKL +Q D+E NK +ALGTSK+NY+DPR++V +
Sbjct: 820 KVEAEGKGVTIEKLENQLLKLSQRIENMSLQAEDRENNKEVALGTSKINYIDPRLTVVF 878
>gi|50305025|ref|XP_452470.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641603|emb|CAH01321.1| KLLA0C06116p [Kluyveromyces lactis]
Length = 785
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/412 (50%), Positives = 272/412 (66%), Gaps = 11/412 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERA----VITDLSK 60
GK + L AEE+A F+A ++E ++ F NF+ D+ + + E A I + K
Sbjct: 188 GKPVDLPPQAEEVAGFFAAILESDHVKIPTFQKNFLHDFLQVLKENGGARNGVQIKEFGK 247
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
DF K+ YF + E++K +S +EKK+++ E E + K Y C IDG E++GNFRIEPPG
Sbjct: 248 LDFTKIFEYFQVQKEQKKQLSPQEKKQLRLEKEELEKPYKFCEIDGRVEQVGNFRIEPPG 307
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV ED+++N K++ +P PP GHKW E+RHDN V WL+ W EN
Sbjct: 308 LFRGRGAHPKNGKLKRRVYPEDVVLNLDKEAPIPEPPKGHKWGEIRHDNTVQWLSMWREN 367
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ +S LKG D++K+E AR L I+K+R +Y++ KS + RQ AVA
Sbjct: 368 ISNSFKYVRFAANSTLKGMSDFKKFEKARMLKDHIDKVRTDYKSKMKSPKTLDRQMAVAT 427
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK +D+ADTVGCCSLR EH+ L P V FDFLGKDSIRYY E
Sbjct: 428 YLIDVFALRAGGEKADDEADTVGCCSLRYEHVTLR-----PPNTVVFDFLGKDSIRYYQE 482
Query: 301 VPVEKRVFKNLQLFVENKKG-SDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+ +VFKNL++F G LFDRL+ S+LNKHL M GLTAKVFRTYNAS T+Q
Sbjct: 483 VEVDAQVFKNLKIFKRPPSGPGHQLFDRLDPSILNKHLQNYMPGLTAKVFRTYNASKTMQ 542
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
QL+ L+ + + AEKIL YN ANR VA+LCNHQR+V K H S+ E+I
Sbjct: 543 DQLD-LIPNEGTVAEKILRYNAANRTVAILCNHQRTVTKGHASSVQKATERI 593
>gi|5305782|gb|AAD41814.1|AF145121_1 topoisomerase I-like protein [Leishmania infantum]
Length = 635
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/427 (50%), Positives = 290/427 (67%), Gaps = 7/427 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+E K++ + EE+AT +A M EH+Y E F NF + WR+ + +K + I L CDF
Sbjct: 71 GREFKMTPEEEEVATMFAVMKEHDYYRMEVFRRNFFESWRE-ILDKRQHPIRRLELCDFE 129
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + + + E++ + +KEEKK IK++ +A + Y C DG +E++ NFR+EPPGLFRG
Sbjct: 130 PIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEPYRYCVWDGRREQVANFRVEPPGLFRG 189
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HP MGKLK RVQ EDI IN + ++VP PP GHKW V+HD+ VTWLA W ++V G
Sbjct: 190 RGKHPLMGKLKVRVQPEDITINIGETAEVPVPPAGHKWAAVQHDHTVTWLAMWRDSVAGN 249
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+ML PSS +KG+ D K+E ARKL ++ IR +Y D+KS ++ + QRAVA+YFID
Sbjct: 250 MKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEDFKSNDLHVAQRAVAMYFID 309
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
+LALR GNEK ED+ADTVGCCSLRVEHIQL + +V FDFLGKDSIRY N+V V
Sbjct: 310 RLALRVGNEKGEDEADTVGCCSLRVEHIQLMPDN-----IVRFDFLGKDSIRYQNDVAVL 364
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
V+ LQ F K D+FD+LN + LN HL M+GL+AKVFRTYNASITL + E
Sbjct: 365 PEVYALLQRFTRRKSPGMDIFDQLNPTQLNDHLKSFMDGLSAKVFRTYNASITLDRWFKE 424
Query: 365 -LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+DP +S A+K+ +N+AN VA+LCNHQ+SV K+ M L K RK ++ E+
Sbjct: 425 KPVDPKWSTADKLAYFNKANTEVAILCNHQKSVSKNFKLQMMQLTTKSEYTRKTIELLEK 484
Query: 424 ALKDAKK 430
A AKK
Sbjct: 485 AEVTAKK 491
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 83/105 (79%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W ++V G +KY+ML PSS +KG+ D K+E ARKL ++ IR +Y D+KS
Sbjct: 235 TVTWLAMWRDSVAGNMKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEDFKSN 294
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
++ + QRAVA+YFID+LALR GNEK ED+ADTVGCCSLRVEHIQL
Sbjct: 295 DLHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQL 339
>gi|146099576|ref|XP_001468679.1| DNA topoisomerase IB, large subunit [Leishmania infantum JPCM5]
gi|11863168|gb|AAG27713.2| DNA topoisomerase I [Leishmania infantum]
gi|134073047|emb|CAM71767.1| DNA topoisomerase IB, large subunit [Leishmania infantum JPCM5]
Length = 635
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/427 (50%), Positives = 290/427 (67%), Gaps = 7/427 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+E K++ + EE+AT +A M EH+Y E F NF + WR+ + +K + I L CDF
Sbjct: 71 GREFKMTPEEEEVATMFAVMKEHDYYRMEVFRRNFFESWRE-ILDKRQHPIRRLELCDFE 129
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + + + E++ + +KEEKK IK++ +A + Y C DG +E++ NFR+EPPGLFRG
Sbjct: 130 PIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEPYRYCVWDGRREQVANFRVEPPGLFRG 189
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HP MGKLK RVQ EDI IN + ++VP PP GHKW V+HD+ VTWLA W ++V G
Sbjct: 190 RGKHPLMGKLKVRVQPEDITINIGETAEVPVPPAGHKWAAVQHDHTVTWLAMWRDSVAGN 249
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+ML PSS +KG+ D K+E ARKL ++ IR +Y D+KS ++ + QRAVA+YFID
Sbjct: 250 MKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEDFKSNDLHVAQRAVAMYFID 309
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
+LALR GNEK ED+ADTVGCCSLRVEHIQL + +V FDFLGKDSIRY N+V V
Sbjct: 310 RLALRVGNEKGEDEADTVGCCSLRVEHIQLMPDN-----IVRFDFLGKDSIRYQNDVAVL 364
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
V+ LQ F K D+FD+LN + LN HL M+GL+AKVFRTYNASITL + E
Sbjct: 365 PEVYALLQRFTRRKSPGMDIFDQLNPTQLNDHLKSFMDGLSAKVFRTYNASITLDRWFKE 424
Query: 365 -LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+DP +S A+K+ +N+AN VA+LCNHQ+SV K+ M L K RK ++ E+
Sbjct: 425 KPVDPKWSTADKLAYFNKANTEVAILCNHQKSVSKNFKLQMMQLTTKSEYTRKTIELLEK 484
Query: 424 ALKDAKK 430
A AKK
Sbjct: 485 AEVTAKK 491
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 83/105 (79%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W ++V G +KY+ML PSS +KG+ D K+E ARKL ++ IR +Y D+KS
Sbjct: 235 TVTWLAMWRDSVAGNMKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEDFKSN 294
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
++ + QRAVA+YFID+LALR GNEK ED+ADTVGCCSLRVEHIQL
Sbjct: 295 DLHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQL 339
>gi|405122155|gb|AFR96922.1| topoisomerase I [Cryptococcus neoformans var. grubii H99]
Length = 886
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/415 (52%), Positives = 284/415 (68%), Gaps = 10/415 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWR---KSMTEKERAVITD 57
M+ G + L ++EE+A F+ ++E +Y F NF +D++ + KE +
Sbjct: 287 MKYDGVSLTLPPESEEVAGFFGALLETDYAQDAKFRENFFRDFKAIVEKYPPKEDVKVKK 346
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
L KCDFR M YF ++ E++KA++KEEKK IK E + + Y +DG KEK+GNFR E
Sbjct: 347 LEKCDFRPMFEYFEKEKEKKKALTKEEKKAIKAEKDKLEAPYLYANVDGRKEKVGNFRAE 406
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLF+GRGEHPK G +K R++ EDIIIN K++ +P P +WK ++HDN VTWLA W
Sbjct: 407 PPGLFKGRGEHPKKGTVKNRLRPEDIIINIGKEAPIPVPNIPGQWKGIQHDNTVTWLAHW 466
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
ENV G KY+ L+ S KG+ D K+E AR+L K ++KIR++Y AD KSK M RQRA
Sbjct: 467 KENVNGNAKYVFLSAGSAWKGQSDRAKFEKARELIKHVDKIRKDYTADLKSKIMADRQRA 526
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
ALYFID+LALRAGNEK ED+ADTVGCCSLR EH+ L P + FDFLGKDS+R+
Sbjct: 527 TALYFIDRLALRAGNEKGEDEADTVGCCSLRYEHVTL-----SPPNTIIFDFLGKDSMRF 581
Query: 298 YNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASI 356
+ EV V+ +VFKN++LF + KK DD+FDRL T++LNKHL+ +M GLTAKVFRTYNAS
Sbjct: 582 HQEVEVDPQVFKNIKLFKADPKKKGDDIFDRLTTTLLNKHLNGMMPGLTAKVFRTYNASW 641
Query: 357 TLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
T Q+QL + + AEKI AYN ANR VA+LCNHQ+SV K + S ++KI
Sbjct: 642 TFQEQLKNTPT-NGTVAEKIAAYNTANRDVAILCNHQKSVSKGFEGSFAKAEDKI 695
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 80/105 (76%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W ENV G KY+ L+ S KG+ D K+E AR+L K ++KIR++Y AD KSK
Sbjct: 459 TVTWLAHWKENVNGNAKYVFLSAGSAWKGQSDRAKFEKARELIKHVDKIRKDYTADLKSK 518
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M RQRA ALYFID+LALRAGNEK ED+ADTVGCCSLR EH+ L
Sbjct: 519 IMADRQRATALYFIDRLALRAGNEKGEDEADTVGCCSLRYEHVTL 563
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 407 LKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTA-LGRLKEQLLKLEVQETDKEEN 465
L E++S + + K+ ++ K AKK + T++K A + R+ E++ +VQ D+++
Sbjct: 774 LDERLSEIKAEFKELKKERK-AKKIDPKRGATEEKLLAQIARIDERIATAKVQLQDRDKL 832
Query: 466 KTIALGTSKLNYLDPRISVTW 486
K +ALGTSK+NY+DPR++V W
Sbjct: 833 KDVALGTSKINYIDPRLTVAW 853
>gi|157876177|ref|XP_001686448.1| DNA topoisomerase IB, large subunit [Leishmania major strain
Friedlin]
gi|68129522|emb|CAJ08065.1| DNA topoisomerase IB, large subunit [Leishmania major strain
Friedlin]
Length = 634
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/427 (50%), Positives = 290/427 (67%), Gaps = 7/427 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+E K++ + EE+AT +A M EH+Y E F NF + WR+ + +++ I L CDF
Sbjct: 71 GREFKMTPEEEEVATMFAVMKEHDYYRMEVFRRNFFESWREILGKRQHP-IRRLELCDFE 129
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ +++ + E++ + +KEEKK IK++ +A + Y C DG +E++ NFR+EPPGLFRG
Sbjct: 130 PIYQWYLVQREKKLSRTKEEKKAIKEKQDAEAEPYRYCVWDGRREQVANFRVEPPGLFRG 189
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HP MGKLK RVQ EDI IN + ++VP PP GHKW V+HD+ VTWLA W +NV G
Sbjct: 190 RGKHPLMGKLKVRVQPEDITINIGETAEVPVPPAGHKWAAVQHDHTVTWLAMWRDNVAGN 249
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+ML PSS +KG+ D K+E ARKL ++ IR +Y +KS ++ + QRAVA+YFID
Sbjct: 250 MKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEAFKSNDLHVAQRAVAMYFID 309
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
+LALR GNEK ED+ADTVGCCSLRVEHIQL + +V FDFLGKDSIRY N+V V
Sbjct: 310 RLALRVGNEKGEDEADTVGCCSLRVEHIQLMPDN-----IVRFDFLGKDSIRYQNDVAVL 364
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
V+ LQ F K D+FD+LN + LN HL M+GL+AKVFRTYNASITL + E
Sbjct: 365 PEVYALLQRFTCRKSPGMDIFDQLNPTQLNDHLKSFMDGLSAKVFRTYNASITLDRWFKE 424
Query: 365 -LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+DP +S A+K+ +N+AN VA+LCNHQ+SV K+ M L K RK ++ E+
Sbjct: 425 KPVDPKWSTADKLAYFNKANTEVAILCNHQKSVSKNFKLQMMQLTTKSEYTRKTLELLEK 484
Query: 424 ALKDAKK 430
A AKK
Sbjct: 485 AEVTAKK 491
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 82/105 (78%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W +NV G +KY+ML PSS +KG+ D K+E ARKL ++ IR +Y +KS
Sbjct: 235 TVTWLAMWRDNVAGNMKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEAFKSN 294
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
++ + QRAVA+YFID+LALR GNEK ED+ADTVGCCSLRVEHIQL
Sbjct: 295 DLHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQL 339
>gi|3172248|gb|AAC18442.1| topoisomerase I [Cryptococcus neoformans var. grubii]
Length = 844
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/415 (52%), Positives = 284/415 (68%), Gaps = 10/415 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWR---KSMTEKERAVITD 57
M+ G + L ++EE+A F+ ++E +Y F NF +D++ + KE +
Sbjct: 245 MKYDGVSLTLPPESEEVAGFFGALLETDYAQDAKFRENFFRDFKAIVEKYPPKEDVKVKK 304
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
L KCDFR M YF ++ E++KA++KEEKK IK E + + Y +DG KEK+GNFR E
Sbjct: 305 LEKCDFRPMFEYFEKEKEKKKALTKEEKKAIKAEKDKLEAPYLYANVDGRKEKVGNFRAE 364
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLF+GRGEHPK G +K R++ EDIIIN K++ +P P +WK ++HDN VTWLA W
Sbjct: 365 PPGLFKGRGEHPKKGTVKNRLRPEDIIINIGKEAPIPVPNIPGQWKGIQHDNTVTWLAHW 424
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
ENV G KY+ L+ S KG+ D K+E AR+L K ++KIR++Y AD KSK M RQRA
Sbjct: 425 KENVNGNAKYVFLSAGSAWKGQSDRAKFEKARELIKHVDKIRKDYTADLKSKIMADRQRA 484
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
ALYFID+LALRAGNEK ED+ADTVGCCSLR EH+ L P + FDFLGKDS+R+
Sbjct: 485 TALYFIDRLALRAGNEKGEDEADTVGCCSLRYEHVTL-----SPPNTIIFDFLGKDSMRF 539
Query: 298 YNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASI 356
+ EV V+ +VFKN++LF + KK DD+FDRL T++LNKHL+ +M GLTAKVFRTYNAS
Sbjct: 540 HQEVEVDPQVFKNIKLFKADPKKKGDDIFDRLTTTLLNKHLNGMMPGLTAKVFRTYNASW 599
Query: 357 TLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
T Q+QL + + AEKI AYN ANR VA+LCNHQ+SV K + S ++KI
Sbjct: 600 TFQEQLKNTPT-NGTVAEKIAAYNTANRDVAILCNHQKSVSKGFEGSFAKAEDKI 653
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/105 (63%), Positives = 80/105 (76%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W ENV G KY+ L+ S KG+ D K+E AR+L K ++KIR++Y AD KSK
Sbjct: 417 TVTWLAHWKENVNGNAKYVFLSAGSAWKGQSDRAKFEKARELIKHVDKIRKDYTADLKSK 476
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M RQRA ALYFID+LALRAGNEK ED+ADTVGCCSLR EH+ L
Sbjct: 477 IMADRQRATALYFIDRLALRAGNEKGEDEADTVGCCSLRYEHVTL 521
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Query: 407 LKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTA-LGRLKEQLLKLEVQETDKEEN 465
L E++S + + K+ ++ K AKK + T++K A + R+ E++ +VQ D+++
Sbjct: 732 LDERLSEIKAEFKELKKERK-AKKIDPKRGATEEKLLAQIARIDERIATAKVQLQDRDKL 790
Query: 466 KTIALGTSKLNYLDPRISVTW 486
K +ALGTSK+NY+DPR++V W
Sbjct: 791 KDVALGTSKINYIDPRLTVAW 811
>gi|327355506|gb|EGE84363.1| DNA topoisomerase I [Ajellomyces dermatitidis ATCC 18188]
Length = 1048
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/427 (49%), Positives = 279/427 (65%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDW----RKSMTEKER--- 52
M+ G + L+ +AEE+A F+ M+ + + F NF D+ +KS K+
Sbjct: 441 MKYDGIPITLAPEAEEVAGFFGSMLNSTHNVENPTFQKNFFTDFTAYIKKSGGAKDPNGN 500
Query: 53 -AVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I CDF+ + Y+ E+K + EKK++K E + + Y C DG K+K+
Sbjct: 501 PVAIKSFDSCDFKPIFEYYEAARLEKKNLPAAEKKRLKAEKDELEAPYMYCMWDGRKQKV 560
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK GK+K RV E I IN KD+KVPPPPPGHKWKEV+HD +
Sbjct: 561 GNFRVEPPALFRGRGEHPKTGKVKTRVMPEQITINIGKDAKVPPPPPGHKWKEVKHDQEG 620
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 621 TWLAMWQENINGNYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRKDYKKSLKHELM 680
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 681 SERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLKP-----PSTVIFDFLG 735
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + K+ D++FDRL TS LNKHLS M GLTAKVFR
Sbjct: 736 KDSIRFYDEVEVDPQVFKNLKIFKKAPKREGDEIFDRLTTSALNKHLSNYMPGLTAKVFR 795
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L +L S AEKI YN ANR VA+LCNH+R+V SH M L ++
Sbjct: 796 TYNASYTMATLLKDLKSTG-SIAEKIKDYNDANRKVAILCNHKRTVTASHASQMEKLGDR 854
Query: 411 ISNKRKQ 417
I + Q
Sbjct: 855 IKGLKYQ 861
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 78/103 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 621 TWLAMWQENINGNYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRKDYKKSLKHELM 680
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 681 SERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTL 723
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 423 RALKDAKKAGESKAMT-DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPR 481
R K K E K +T +K + L +L +++ + +Q D+E NK +ALGTSK+NY+DPR
Sbjct: 951 RENKTKKVEAEGKGVTIEKLENQLLKLSQRIENMSLQAEDRENNKEVALGTSKINYIDPR 1010
Query: 482 ISVTW 486
++V +
Sbjct: 1011 LTVVF 1015
>gi|70990502|ref|XP_750100.1| topoisomerase I [Aspergillus fumigatus Af293]
gi|66847732|gb|EAL88062.1| topoisomerase I [Aspergillus fumigatus Af293]
gi|159130581|gb|EDP55694.1| topoisomerase I [Aspergillus fumigatus A1163]
Length = 998
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/427 (49%), Positives = 281/427 (65%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSMTEKERAV----- 54
M+ G + L +AEE+A F+ M+ ++ F NF D+++ + + A
Sbjct: 391 MKYDGVPVTLHPEAEEVAGFFGSMLNATQHVENPTFQKNFFMDFKEVLEKTGGAKDPKGN 450
Query: 55 ---ITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I + SKCDFR + Y+ K E+K + EKK++K E +A Y C DG K+K+
Sbjct: 451 KIEIKEFSKCDFRPIFDYYDAKRIEKKNLPPAEKKRLKAEKDAAEAPYMYCLWDGRKQKV 510
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN KD+ VPPPP GH+WKEV+HD +
Sbjct: 511 GNFRVEPPALFRGRGEHPKTGRVKARVQPEQITINIGKDAPVPPPPEGHRWKEVKHDQEG 570
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG D++K+E AR+L K I++IR++YQ K + M
Sbjct: 571 TWLAMWQENINGNYKYVMLAANSDVKGLSDYKKFEKARELKKHIDRIRKDYQKALKHELM 630
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L P V FDFLG
Sbjct: 631 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLK-----PPNKVIFDFLG 685
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M GLTAKVFR
Sbjct: 686 KDSIRFYDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSNYMPGLTAKVFR 745
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M S AEK+ AYN ANR VA+LCNH+R+V SH M + E+
Sbjct: 746 TYNASYTMATLLKD-MKATGSVAEKVKAYNDANRRVAILCNHKRTVTASHANQMEKMSER 804
Query: 411 ISNKRKQ 417
I R Q
Sbjct: 805 IKGLRYQ 811
>gi|402224180|gb|EJU04243.1| topoisomerase I [Dacryopinax sp. DJM-731 SS1]
Length = 846
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/395 (51%), Positives = 273/395 (69%), Gaps = 8/395 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE---KERAVITDLSKC 61
GK ++L ++EE+A F+ M+E + F NF +D++ +++ + I L C
Sbjct: 277 GKVVELPHESEEVAGFFGAMLETPHAQDNQFRNNFFEDFQAVLSKYPPRNGIKIKSLDAC 336
Query: 62 DFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGL 121
DFR M+ +F + ++KAMS EKK+ K +A+ + Y C +DG KEK+GNFR+EPPGL
Sbjct: 337 DFRPMYEHFEAERAKKKAMSTAEKKETKKVKDALEEPYLYCMLDGRKEKVGNFRVEPPGL 396
Query: 122 FRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENV 181
FRGRGEHP+ G+LK R+ ED+IIN + SK+P P KWKEV HDN VTWLA+W EN+
Sbjct: 397 FRGRGEHPRKGRLKLRLHPEDMIINIGEGSKIPVPNIPGKWKEVIHDNTVTWLANWKENI 456
Query: 182 QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALY 241
G KY+ L S LKG+ D K+E AR+L K ++++R++Y AD SK M RQRA A+Y
Sbjct: 457 NGNSKYVFLAAGSSLKGQSDIAKFEKARELKKHVDRLRKDYTADLGSKVMAERQRATAIY 516
Query: 242 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEV 301
FID+ ALRAGNEK +++ADTVGCCSLR EH+ + KP + DFLGKDSIRYYNE+
Sbjct: 517 FIDRYALRAGNEKGDEEADTVGCCSLRYEHVTME-----KPDKLILDFLGKDSIRYYNEL 571
Query: 302 PVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
VE ++FKN+++F E K DDLFDR+ T+ LNK+L M+GLTAKVFRTYNASIT QQ
Sbjct: 572 KVEPQIFKNVRIFKEGKSEGDDLFDRVTTASLNKYLQSYMKGLTAKVFRTYNASITCQQL 631
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L +L DP+ + AEKIL++NRANR + L +R +
Sbjct: 632 LEKLTDPNATVAEKILSFNRANRELRALKYQRRKL 666
>gi|119497075|ref|XP_001265305.1| topoisomerase I [Neosartorya fischeri NRRL 181]
gi|119413467|gb|EAW23408.1| topoisomerase I [Neosartorya fischeri NRRL 181]
Length = 886
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/427 (49%), Positives = 281/427 (65%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSMTEKERA------ 53
M+ G + L +AEE+A F+ M+ ++ F NF D+++ + + A
Sbjct: 279 MKYDGVPVTLHPEAEEVAGFFGSMLNATQHVENPTFQKNFFMDFKEVLKKTGGAKDPKGN 338
Query: 54 --VITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I + SKCDFR + Y+ K E+K + EKK++K E +A Y C DG K+K+
Sbjct: 339 KIEIKEFSKCDFRPIFDYYEAKRIEKKNLPPAEKKRLKAEKDAAEAPYMYCLWDGRKQKV 398
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN KD+ VPPPP GH+WKEV+HD +
Sbjct: 399 GNFRVEPPALFRGRGEHPKTGRVKARVQPEQITINIGKDAPVPPPPEGHRWKEVKHDQEG 458
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG D++K+E AR+L K I++IR++YQ K + M
Sbjct: 459 TWLAMWQENINGNYKYVMLAANSDVKGLSDYKKFEKARELKKHIDRIRKDYQKALKHELM 518
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L P V FDFLG
Sbjct: 519 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLK-----PPNKVIFDFLG 573
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M GLTAKVFR
Sbjct: 574 KDSIRFYDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSNYMPGLTAKVFR 633
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M S AEK+ AYN ANR VA+LCNH+R+V SH M + E+
Sbjct: 634 TYNASYTMATLLKD-MKATGSVAEKVKAYNDANRRVAILCNHKRTVTASHANQMEKMSER 692
Query: 411 ISNKRKQ 417
I R Q
Sbjct: 693 IKGLRYQ 699
>gi|20258815|gb|AAM14018.1| putative DNA topoisomerase I [Arabidopsis thaliana]
Length = 514
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 233/485 (48%), Positives = 315/485 (64%), Gaps = 22/485 (4%)
Query: 15 EEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKS 74
EE+AT +A M E +Y TK F NF DWR+ + +K VI L CDF ++ + +++
Sbjct: 4 EEVATMFAVMRETDYYTKPQFRENFWNDWRRLLGKKH--VIQKLDDCDFTPIYEWHLEEK 61
Query: 75 EERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKL 134
E++K MS EEKK +K+E ++Y +DG KEKIGNFR+EPPGLFRGRGEHPKMGKL
Sbjct: 62 EKKKQMSTEEKKALKEEKMKQEEKYMWAVVDGVKEKIGNFRVEPPGLFRGRGEHPKMGKL 121
Query: 135 KRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQG-QVKYIMLNP 192
K+R+ +I +N K + +P P G +WKEV+HDN VTWLA W + + + KY+ L
Sbjct: 122 KKRIHPCEITLNIGKGAPIPECPIAGERWKEVKHDNTVTWLAFWADPINPKEFKYVFLGA 181
Query: 193 SSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGN 252
S LKG D +KYE AR L I+ IR Y ++ +K++++RQ AVA Y IDKLALRAGN
Sbjct: 182 GSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVKMRQIAVATYLIDKLALRAGN 241
Query: 253 EKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQ 312
EKD+D+ADTVGCC+L+V +++ P + FDFLGKDSI+Y N V VE V+K +
Sbjct: 242 EKDDDEADTVGCCTLKVGNVECI-----PPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIG 296
Query: 313 LFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN-ELMDPDFS 371
F K +DDLFD L+TS LN HL EL+ GLTAKVFRTYNASITL + L+ E D D +
Sbjct: 297 QFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVT 356
Query: 372 EAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKA 431
+KI+ Y +AN+ VA++CNHQR+V K+H + L +I ++ +K+ + L AKK
Sbjct: 357 --QKIVVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKG 414
Query: 432 GESKAMTDKKKTAL-------GRLKEQLLKLEVQETD---KEENKTIALGTSKLNYLDPR 481
+D KK ++ +Q K+E E D KE+ KT+ALGTSK+NYLDPR
Sbjct: 415 KPPLEGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPR 474
Query: 482 ISVTW 486
I+V W
Sbjct: 475 ITVAW 479
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L S LKG D +KYE AR L I+ IR Y ++ +
Sbjct: 158 TVTWLAFWADPINPKEFKYVFLGAGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTA 217
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K++++RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 218 KDVKMRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 262
>gi|449017694|dbj|BAM81096.1| DNA topoisomerase [Cyanidioschyzon merolae strain 10D]
Length = 706
Score = 417 bits (1071), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/523 (40%), Positives = 310/523 (59%), Gaps = 46/523 (8%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G E+ L +AEE+ATFYA + Y KE F NF D+RK++ R I L CDF
Sbjct: 142 GCEIALPPEAEEVATFYASKLGTVYLEKETFRKNFFDDFRKTLPVDLRKRIVKLEHCDFS 201
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ Y + E +++M ++K++++ Y V +DG KEK+ N+R+EPPGLF G
Sbjct: 202 RIREYLDELKERKQSMPPSKRKELREAEAQRVAHYTVAIVDGRKEKVANYRVEPPGLFLG 261
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQG 183
RG+HP MG++KRR+ ED+ +N +D+ +PP P GH W + H+ +VTWLA W + +
Sbjct: 262 RGDHPLMGRVKRRIFPEDVTLNLGRDAPIPPCPFKGHDWGSIVHNQRVTWLACWRDPISD 321
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
+ KY+ L+ SS K D +K+E A++L+K I KIR Y +S + +QR+VALY I
Sbjct: 322 EYKYVWLSASSHFKAMSDQEKFEKAQQLSKHITKIRNEYTKGLESADRHTQQRSVALYLI 381
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALR GNEK ED+ADTVGCCSLRVEHI L E P +V DFLGKDS+RY+N V V
Sbjct: 382 DKLALRVGNEKGEDEADTVGCCSLRVEHITLQE-----PNIVQLDFLGKDSMRYFNRVRV 436
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
E VF L+ F++ K+ SD++FD L LN +L LM GL+AKVFRTYNAS TL + L+
Sbjct: 437 EALVFHRLREFLKGKRVSDNVFDELKVEELNDYLKSLMPGLSAKVFRTYNASYTLDKLLH 496
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+ P ++L YN AN+ VAVLCNHQRS+PK+H + L++K+ R ++ +
Sbjct: 497 SVKTPGPDIHSRLLFYNEANKDVAVLCNHQRSLPKTHSLMLERLRDKLEESRAYLEALKM 556
Query: 424 ALKDAKKAGESKA-----------------MTDKKKT----------------------- 443
A A+ + +S+A + ++K+
Sbjct: 557 ARGKAQASPDSRAQVTRWRRPVVEIPEDCSLAERKRIREEAEKRPKEKQVVNMGLASITR 616
Query: 444 ALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ + +E++ +LE ++ T++L TSK+NYLDPRI+V W
Sbjct: 617 GIAQTQEKIRRLEADLKTRDSLATVSLSTSKINYLDPRITVAW 659
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 81/127 (63%), Gaps = 9/127 (7%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W + + + KY+ L+ SS K D +K+E A++L+K I KIR Y +S +
Sbjct: 309 VTWLACWRDPISDEYKYVWLSASSHFKAMSDQEKFEKAQQLSKHITKIRNEYTKGLESAD 368
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE---------KDEK 594
+QR+VALY IDKLALR GNEK ED+ADTVGCCSLRVEHI L E KD
Sbjct: 369 RHTQQRSVALYLIDKLALRVGNEKGEDEADTVGCCSLRVEHITLQEPNIVQLDFLGKDSM 428
Query: 595 KIYNKTQ 601
+ +N+ +
Sbjct: 429 RYFNRVR 435
>gi|340924245|gb|EGS19148.1| topoisomerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 896
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/418 (51%), Positives = 278/418 (66%), Gaps = 16/418 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSMTEKERAV--------I 55
GK + L +AEE+ATF+ M+ ++ F NF D+++ + + A I
Sbjct: 289 GKPVNLHVEAEEVATFFGSMLHATQHVENPVFQKNFFTDFKEVLDKTGGAKDMDGNPVDI 348
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
+ K DF K++ +F SE +K EKK K+ + Y C DG KEK+GNFR
Sbjct: 349 KEFKKLDFTKIYEHFRSISEAKKNRPAAEKKAEKEAKAKLEAPYMYCKWDGRKEKVGNFR 408
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRGEHPK GK+K+RV E I IN KD+KVP PPPGHKWK V+HDN+ TWLA
Sbjct: 409 VEPPGLFRGRGEHPKTGKVKKRVMPEQITINIGKDAKVPDPPPGHKWKAVQHDNKATWLA 468
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y D KS+ M RQ
Sbjct: 469 MWQENVNGNYKYVMLAANSSIKGQSDFKKFEKARELKKHIDRIRADYTRDLKSEVMAERQ 528
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E P V FDFLGKDS
Sbjct: 529 RATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLKE-----PNTVIFDFLGKDS 583
Query: 295 IRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IR+YNE V+++VFKNL++F + K+ DD+FDRL T+ LNKHLS M GLTAKVFRTYN
Sbjct: 584 IRFYNEFQVDRQVFKNLKMFKKPPKEPGDDIFDRLTTTQLNKHLSSYMPGLTAKVFRTYN 643
Query: 354 ASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
AS T+ + L L S AEK+ YN NR VA+LCNH+R+V SH+ M L ++I
Sbjct: 644 ASYTMSRLLKGLKADGLSMAEKVKLYNDCNREVAILCNHKRTVGASHEAQMEKLGDRI 701
>gi|241956336|ref|XP_002420888.1| DNA topoisomerase, putative [Candida dubliniensis CD36]
gi|223644231|emb|CAX41041.1| DNA topoisomerase, putative [Candida dubliniensis CD36]
Length = 777
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/411 (51%), Positives = 289/411 (70%), Gaps = 9/411 (2%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKER--AVITDLSKC 61
K + L +AEE+A FY M+E ++ F NF D+ + + E I D K
Sbjct: 182 NNKPVNLPPEAEEVAGFYGAMLETDHAKNPVFQKNFFNDFLEVLKECGGCGVEIKDFEKL 241
Query: 62 DFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGL 121
DF KM+A+F + EE+KAMSKEEKK+IK+E E + + C ++G KE +GNFRIEPPGL
Sbjct: 242 DFSKMYAHFEKLREEKKAMSKEEKKRIKEEKEKEEEPFKTCYLNGRKELVGNFRIEPPGL 301
Query: 122 FRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENV 181
FRGRG HPK GKLKRRV E + +N SKD+K+P PP GH+W E+RHDN+VTWLA W EN+
Sbjct: 302 FRGRGAHPKTGKLKRRVAPEQVTLNLSKDAKIPEPPAGHQWGEIRHDNEVTWLAMWKENI 361
Query: 182 QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALY 241
+KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++M+ RQ A A+Y
Sbjct: 362 SDSLKYVRFANNSSVKGQSDFKKFETARKLRNYVDDIRKDYTKMLKSEKMQDRQMATAMY 421
Query: 242 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEV 301
ID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y EV
Sbjct: 422 LIDVFALRAGGEKGEDEADTVGCCSLRYEHVTLK-----PPNKVIFDFLGKDSIRFYQEV 476
Query: 302 PVEKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
V+K+VFKNL++F ++ K+ DDLFDR+N S++N+ L M+GLTAKVFRTYNAS T+Q
Sbjct: 477 EVDKQVFKNLRIFKKSPKQPGDDLFDRINPSLVNRQLQYYMKGLTAKVFRTYNASKTMQD 536
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
Q++ L++ + + AEK++ +N ANR VA+LCNHQR+V K+H S+ + +K+
Sbjct: 537 QID-LIENEGTVAEKVVKFNAANRTVAILCNHQRTVSKTHGDSIQRINDKL 586
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 75/104 (72%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ +KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++
Sbjct: 351 VTWLAMWKENISDSLKYVRFANNSSVKGQSDFKKFETARKLRNYVDDIRKDYTKMLKSEK 410
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A+Y ID ALRAG EK ED+ADTVGCCSLR EH+ L
Sbjct: 411 MQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSLRYEHVTL 454
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 405 GNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEE 464
++K+K+ + K+ ++ LK K A +K K + L+ ++L + Q DKE+
Sbjct: 663 SDIKDKLDKIDELEKEYKKELKTGKPIITKNATVEKLKQQIETLENRILNVSFQLKDKED 722
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
N ++LGTSK+NY+DPR++V +
Sbjct: 723 NSEVSLGTSKMNYIDPRLTVMF 744
>gi|425766626|gb|EKV05229.1| Topoisomerase I [Penicillium digitatum Pd1]
gi|425775277|gb|EKV13555.1| Topoisomerase I [Penicillium digitatum PHI26]
Length = 876
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/423 (49%), Positives = 281/423 (66%), Gaps = 15/423 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSMTEKERAV--------I 55
G + L+ +AEE+ATF+ M+ + + F NF D+++ + + A I
Sbjct: 272 GVPVSLAPEAEEVATFFGSMLNSTHNVENPVFQKNFFGDFKEVVKKTGGAKDAKGNKIDI 331
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
+ +KCDF+ + ++ + EE++ + EKK K + Y C DG K+K+GNFR
Sbjct: 332 KEFAKCDFKSIFNFYDAQREEKRNLPPAEKKAAKALKDEQEAPYQFCVWDGRKQKVGNFR 391
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPP LFRGRGEHPK G++K RVQ E I IN KD++VPPPPPGHKWKEV+HD + TWLA
Sbjct: 392 VEPPSLFRGRGEHPKTGRVKTRVQPEQITINIGKDARVPPPPPGHKWKEVKHDQEGTWLA 451
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I KIR++YQ + K M RQ
Sbjct: 452 MWQENINGNYKYVMLAANSDVKGQSDFKKFEKARELKKHIEKIRKDYQKNLKHDMMVERQ 511
Query: 236 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSI 295
+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L P V FDFLGKDSI
Sbjct: 512 KATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLK-----PPNTVVFDFLGKDSI 566
Query: 296 RYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
R+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHL+ M GLTAKVFRTYNA
Sbjct: 567 RFYDEVQVDLQVFKNLKIFKKAPKKSGDEIFDRLTTSALNKHLANYMPGLTAKVFRTYNA 626
Query: 355 SITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNK 414
S T+ LNE+ + AEK+ AYN ANR VA+LCNH+R+V H +M + E+I
Sbjct: 627 SYTMGCVLNEMNPTGGTVAEKVKAYNDANRKVAILCNHKRTVTAGHANAMEKMGERIKGL 686
Query: 415 RKQ 417
R Q
Sbjct: 687 RYQ 689
>gi|115388445|ref|XP_001211728.1| DNA topoisomerase I [Aspergillus terreus NIH2624]
gi|114195812|gb|EAU37512.1| DNA topoisomerase I [Aspergillus terreus NIH2624]
Length = 872
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/427 (49%), Positives = 282/427 (66%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSMTEKERAV----- 54
M+ G + L DAEE+A F+ M+ ++T F NF D++ + + A
Sbjct: 265 MKYDGVPVTLHPDAEEVAGFFGSMLNSTQHTENPTFQKNFFMDFKDILKKTGGATDPKGN 324
Query: 55 ---ITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I + KCDF+ + Y+ K E++ + EKK++K E + Y C DG K+K+
Sbjct: 325 KVDIKEFKKCDFQPIFDYYEAKRIEKRNLPAAEKKRLKAEKDEQEAPYMYCMWDGRKQKV 384
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN K+++VPPPP GHKWKEV+HD +
Sbjct: 385 GNFRVEPPSLFRGRGEHPKTGRVKARVQPEQITINIGKEARVPPPPEGHKWKEVKHDQEG 444
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I KIR++YQ + K + M
Sbjct: 445 TWLAMWQENINGNYKYVMLAANSDVKGQSDYKKFEKARELKKYIGKIRKDYQKNLKHELM 504
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L P V FDFLG
Sbjct: 505 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLK-----PPNKVVFDFLG 559
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M GLTAKVFR
Sbjct: 560 KDSIRFYDEVDVDPQVFKNLKIFKKAPKKEGDEIFDRLTTSALNKHLSNYMPGLTAKVFR 619
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ + L + M + AEK+ AYN ANR VA+LCNH+R+V SH M + E+
Sbjct: 620 TYNASHTMAELLKD-MKATGNIAEKVKAYNDANRRVAILCNHKRTVGASHANQMEKMSER 678
Query: 411 ISNKRKQ 417
I R Q
Sbjct: 679 IKGLRYQ 685
>gi|448089584|ref|XP_004196847.1| Piso0_004073 [Millerozyma farinosa CBS 7064]
gi|448093884|ref|XP_004197878.1| Piso0_004073 [Millerozyma farinosa CBS 7064]
gi|359378269|emb|CCE84528.1| Piso0_004073 [Millerozyma farinosa CBS 7064]
gi|359379300|emb|CCE83497.1| Piso0_004073 [Millerozyma farinosa CBS 7064]
Length = 774
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/410 (49%), Positives = 274/410 (66%), Gaps = 9/410 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKE--RAVITDLSKCD 62
G + L +AEE+A F+A ++E ++ F NF +D+ K + + I D +K D
Sbjct: 180 GVPVDLPIEAEEVAGFFAALLETDHAKNPTFQKNFFEDFCKVLKDAGGCNVNIIDFNKMD 239
Query: 63 FRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLF 122
F KMHAYF E++K MS++EKK +K E E + Y C ++G +E++GNF+IEPPGLF
Sbjct: 240 FSKMHAYFEMLKEQKKMMSRDEKKALKLEREKFEEPYKFCLLNGRREQVGNFKIEPPGLF 299
Query: 123 RGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQ 182
RGRG HPK GKLK+RV ED+ +N SK K+P PP GHKW EVRHDN VTWLA W EN+
Sbjct: 300 RGRGAHPKTGKLKKRVYPEDVTLNLSKGVKIPDPPAGHKWAEVRHDNTVTWLAMWKENIT 359
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
KY+ +S +KG D++K+ETAR L I+ IR++Y K M+ RQ A A Y
Sbjct: 360 DSFKYVRFGNTSSVKGMSDFKKFETARNLKYHIDAIRKDYNKMLKDPLMQNRQMATATYL 419
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
ID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y EV
Sbjct: 420 IDIFALRAGGEKGEDEADTVGCCSLRYEHVTLK-----PPNKVIFDFLGKDSIRFYQEVE 474
Query: 303 VEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
V+ + FKNL++F + K+ DDLFDR++ +LNK M+GLTAKVFRTYNAS T+Q Q
Sbjct: 475 VDPQAFKNLRIFKKPPKQPGDDLFDRISPPMLNKQFQTYMKGLTAKVFRTYNASKTMQDQ 534
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
L+ L+ + + AEK++ +N ANR VA+LCNHQR++ K+H ++ + +K+
Sbjct: 535 LD-LIPNEGTVAEKVVKFNAANRTVAILCNHQRTISKTHSAAVEKIHDKL 583
>gi|365984679|ref|XP_003669172.1| hypothetical protein NDAI_0C02690 [Naumovozyma dairenensis CBS 421]
gi|343767940|emb|CCD23929.1| hypothetical protein NDAI_0C02690 [Naumovozyma dairenensis CBS 421]
Length = 780
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/412 (50%), Positives = 276/412 (66%), Gaps = 11/412 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE----KERAVITDLSK 60
GK + L +AEE+A F+ M+E ++ F NF D+ + + K I + +K
Sbjct: 183 GKPVDLPLEAEEVAGFFGAMLETDHAKNPTFQKNFFTDFLHVLEQNGGTKNGIEIKEFTK 242
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF+K+ Y+ + E + S EKK+I+ E E ++Y C +DG KE++GNF++EPPG
Sbjct: 243 CDFKKIFDYYDLQREATRQKSSLEKKQIRLEREKAEEKYKFCELDGRKEQVGNFKVEPPG 302
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRVQ EDI++N S+D+ +P P GH+W EVRHDN V WLA W EN
Sbjct: 303 LFRGRGAHPKTGKLKRRVQPEDIVLNLSEDAPIPEAPAGHQWGEVRHDNTVQWLAMWKEN 362
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ +KY+ L +S LKG+ D +K+E AR+L I+ IR++Y+ K+K M RQ+A A+
Sbjct: 363 IFNSLKYVRLAANSSLKGQNDLKKFEKARQLKDHIDTIRKDYRKRLKNKFMLERQKATAI 422
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK E++ADTVGCCSLR EH+ L P V FDFLGKDSIRYY +
Sbjct: 423 YLIDVFALRAGGEKSEEEADTVGCCSLRYEHVTLK-----PPNTVIFDFLGKDSIRYYQQ 477
Query: 301 VPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+K+VFK+L +F K+ LFDRL+ S+LNKHL M GLTAKVFRTYNAS T+Q
Sbjct: 478 VEVDKQVFKDLTIFKRPPKQPGHQLFDRLDPSILNKHLQSYMPGLTAKVFRTYNASKTMQ 537
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
QL+ L+ + + AEK+L YN ANR VA+LCNHQR+V K H +S+ KI
Sbjct: 538 DQLD-LIPNEGTVAEKLLRYNAANRTVAILCNHQRTVTKGHAQSVEKANMKI 588
>gi|440639738|gb|ELR09657.1| hypothetical protein GMDG_04148 [Geomyces destructans 20631-21]
Length = 901
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/418 (50%), Positives = 276/418 (66%), Gaps = 16/418 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSMT--------EKERAVI 55
G + L + EE+A F+ M+ + F NF D+ + + + + I
Sbjct: 295 GTPISLHVEVEEVAGFFGAMLNSTLNVENPTFQKNFFNDFTEILAKNGGAKDKDGNKVAI 354
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
+ SK DF ++ Y+ KSEE+KA S EKK K + + Y CT DG KE++GNFR
Sbjct: 355 KEFSKLDFSRIFEYYQGKSEEKKARSPAEKKADKAAKDELEAPYLYCTWDGRKERVGNFR 414
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPP LFRGRGEHPK GK+K+RV E I IN ++ VP PPPGHKWKE++HDN+ TWLA
Sbjct: 415 VEPPSLFRGRGEHPKTGKVKKRVMPEQITINIGPNATVPTPPPGHKWKEIKHDNKATWLA 474
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++YQ KS+ M RQ
Sbjct: 475 MWQENINGAYKYVMLAANSTVKGQSDFKKFEKARELKKHIDRIRKDYQKALKSELMADRQ 534
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L P V FDFLGKDS
Sbjct: 535 RATAVYLIDKFALRAGNEKDSENEAETVGCCSLKFEHVTLKP-----PNTVIFDFLGKDS 589
Query: 295 IRYYNEVPVEKRVFKNLQLFVENKKG-SDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IR+Y+EV V+ +VF+NL++F ++ K DD+FDRLNT LNKHL+ M GLTAKVFRTYN
Sbjct: 590 IRFYDEVTVDPQVFRNLKIFKKSPKTEGDDIFDRLNTGQLNKHLANYMPGLTAKVFRTYN 649
Query: 354 ASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
AS T+ L EL + S EKI YN NR VA+LCNH+R+V H+ MG L ++I
Sbjct: 650 ASYTMSTLLQELEATNTSLHEKIKLYNDCNRKVAILCNHKRTVGAGHEAQMGKLTDRI 707
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++YQ KS+
Sbjct: 470 ATWLAMWQENINGAYKYVMLAANSTVKGQSDFKKFEKARELKKHIDRIRKDYQKALKSEL 529
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQL 587
M RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L
Sbjct: 530 MADRQRATAVYLIDKFALRAGNEKDSENEAETVGCCSLKFEHVTL 574
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 36/49 (73%)
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+K + A+ ++ +++ + +Q D+E NK +ALGTSK+NY+DPR++V +
Sbjct: 819 VEKLQAAVEKIDQRITTMNLQAEDREGNKEVALGTSKINYIDPRLTVVF 867
>gi|255935477|ref|XP_002558765.1| Pc13g03270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583385|emb|CAP91396.1| Pc13g03270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 864
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/427 (48%), Positives = 283/427 (66%), Gaps = 15/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSM--------TEKE 51
M+ G + L+ +AEE+A+F+ M+ + + F NF D++ + ++
Sbjct: 256 MKYDGIPITLAPEAEEVASFFGTMLNSTHNVENPVFQKNFFSDFKDVIKKSGGAKDSKGN 315
Query: 52 RAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
+ I + +KCDF+ + ++ + EE++ + EKK K + Y C DG K+K+
Sbjct: 316 KVDIKEFAKCDFKPIFEFYDAQREEKRHLPPAEKKAAKALKDEQEAPYQYCIWDGRKQKV 375
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN KD+KVPPPPPGHKWKEV+HD +
Sbjct: 376 GNFRVEPPSLFRGRGEHPKTGRVKTRVQPEQITINIGKDAKVPPPPPGHKWKEVKHDQEG 435
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I KIR++YQ + K M
Sbjct: 436 TWLAMWQENINGNYKYVMLAANSDVKGQSDFKKFEKARELKKHIEKIRKDYQKNLKHDMM 495
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L P V FDFLG
Sbjct: 496 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLK-----PPNTVVFDFLG 550
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHL+ M GLTAKVFR
Sbjct: 551 KDSIRFYDEVQVDLQVFKNLKIFKKAPKKNGDEIFDRLTTSALNKHLANYMPGLTAKVFR 610
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ LNE+ + AEK+ AYN ANR VA+LCNH+R+V H +M + E+
Sbjct: 611 TYNASYTMGCVLNEMNASGGTIAEKVKAYNDANRKVAILCNHKRTVTAGHANAMEKMGER 670
Query: 411 ISNKRKQ 417
I R Q
Sbjct: 671 IKGLRYQ 677
>gi|90076392|dbj|BAE87876.1| unnamed protein product [Macaca fascicularis]
Length = 355
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 184/274 (67%), Positives = 224/274 (81%), Gaps = 1/274 (0%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
M+LS AEE+ATFY RM++HEYTTKE F NF DWRK MT +ER VI L KCDF ++H
Sbjct: 1 MRLSVKAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMTVEEREVIKSLDKCDFTEIH 60
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGE 127
YFV K+ RK +++EEK+ +K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRGRG+
Sbjct: 61 RYFVDKAAARKVLTREEKQNLKEEAENLQQEFGYCILDGHREKIGNFKTEPPGLFRGRGD 120
Query: 128 HPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKY 187
HPKMG LKRRV ED++INCS+DSK+P PP GH+WKEVR DN V WLA+WTE++Q +KY
Sbjct: 121 HPKMGMLKRRVMPEDVVINCSRDSKIPKPPAGHQWKEVRSDNTVMWLAAWTESIQNSIKY 180
Query: 188 IMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLA 247
+MLNP SKLKGEK WQK+ETAR+L +++IR YQADWKS+EM+ RQRAVALYFIDKLA
Sbjct: 181 VMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYQADWKSQEMKTRQRAVALYFIDKLA 240
Query: 248 LRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDG 280
LRAGNEK D + ADTVGCCSLRVEH+QLH E DG
Sbjct: 241 LRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADG 274
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA+WTE++Q +KY+MLNP SKLKGEK WQK+ETAR+L +++IR YQADWKS+
Sbjct: 163 TVMWLAAWTESIQNSIKYVMLNPCSKLKGEKAWQKFETARRLRGFVDEIRSQYQADWKSQ 222
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 223 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 273
>gi|321262248|ref|XP_003195843.1| topoisomerase I [Cryptococcus gattii WM276]
gi|317462317|gb|ADV24056.1| topoisomerase I [Cryptococcus gattii WM276]
Length = 885
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/415 (52%), Positives = 285/415 (68%), Gaps = 10/415 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWR---KSMTEKERAVITD 57
M+ G + L ++EE+A F+ ++E +Y F NF +D++ + KE +
Sbjct: 286 MKYDGVALTLPPESEEVAGFFGALLETDYAQDAKFRENFFRDFKAIVEKYPPKEDVKVKK 345
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
L KCDFR M YF ++ E++KA++KEEKK IK + + + Y +DG KEK+GNFR E
Sbjct: 346 LEKCDFRPMFEYFEKEKEKKKALTKEEKKAIKADKDKLEAPYLYANVDGRKEKVGNFRAE 405
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLF+GRGEHPK G +K R++ EDIIIN K++ +P P +WK ++HDN VTWLA W
Sbjct: 406 PPGLFKGRGEHPKKGTVKNRLRPEDIIINIGKEAPIPVPNIPGQWKGIQHDNTVTWLAHW 465
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
ENV G KY+ L+ S KG+ D K+E AR+L K ++KIR++Y AD KSK M RQRA
Sbjct: 466 KENVNGNAKYVFLSAGSAWKGQSDRAKFEKARELIKHVDKIRKDYTADLKSKVMADRQRA 525
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
ALYFID+LALRAGNEK ED+ADTVGCCSLR EH+ L P + FDFLGKDS+R+
Sbjct: 526 TALYFIDRLALRAGNEKGEDEADTVGCCSLRYEHVTL-----SPPCTIIFDFLGKDSMRF 580
Query: 298 YNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASI 356
+ EV V+ +VFKN++LF E KK DD+FDRL T++LNKHL+ +M GLTAKVFRTYNAS
Sbjct: 581 HQEVEVDPQVFKNIKLFKAEPKKKGDDIFDRLTTTLLNKHLNTMMPGLTAKVFRTYNASW 640
Query: 357 TLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
T Q+QL + + + AEKI AYN ANR VA+LCNHQ+SV K + S ++KI
Sbjct: 641 TFQEQLKKTPK-NGTVAEKIAAYNTANRDVAILCNHQKSVSKGFEGSFAKAEDKI 694
>gi|171687333|ref|XP_001908607.1| hypothetical protein [Podospora anserina S mat+]
gi|170943628|emb|CAP69280.1| unnamed protein product [Podospora anserina S mat+]
Length = 904
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/424 (51%), Positives = 276/424 (65%), Gaps = 16/424 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSMTEKERAV--------I 55
G + L DAEE+ATF+ M+ + F NF KD+R + E A I
Sbjct: 297 GTPVNLHVDAEEVATFFGAMLHSTQNVENPTFQKNFFKDFRDVLKETGGAKDQNGKPVDI 356
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
+ +K DF K+ Y+ SE +KA EKK K E + Y C DG KEK+GNFR
Sbjct: 357 KEFAKLDFTKIFEYYKGLSEAKKARPAAEKKAEKAEKDKFEAPYMYCKWDGRKEKVGNFR 416
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRGEHPK G +K+RV E + IN K++KVP PP GHKWK V+HDN+ TWLA
Sbjct: 417 VEPPGLFRGRGEHPKTGTVKKRVMPEQVTINIGKEAKVPDPPAGHKWKAVQHDNKATWLA 476
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W ENV G KY+ML +S +KG+ D++K+E AR+L K I +IR +Y A+ KS+ M RQ
Sbjct: 477 MWQENVNGNYKYVMLAANSTVKGQADYKKFEKARELNKHIARIRADYTAELKSEIMAERQ 536
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E P V FDFLGKDS
Sbjct: 537 RATAMYLIDKFALRAGNEKDTENEAETVGCCSLKFEHVTLRE-----PNTVIFDFLGKDS 591
Query: 295 IRYYNEVPVEKRVFKNLQLFVENKKG-SDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IR+YNE VE++VFKNL+LF + K DD+FDRL TS LNKHLS M GLTAKVFRTYN
Sbjct: 592 IRFYNEFTVERQVFKNLKLFKKPPKADGDDIFDRLTTSQLNKHLSNYMPGLTAKVFRTYN 651
Query: 354 ASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN 413
AS T+ L L + + AEKI YN NR VAV+CNH+R+V +H+ M L ++I
Sbjct: 652 ASHTMSTLLQSLSVENRTMAEKIKLYNDCNREVAVICNHKRTVGAAHEAQMEKLADRIKG 711
Query: 414 KRKQ 417
+ Q
Sbjct: 712 LKYQ 715
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 85/125 (68%), Gaps = 10/125 (8%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I +IR +Y A+ KS+
Sbjct: 472 ATWLAMWQENVNGNYKYVMLAANSTVKGQADYKKFEKARELNKHIARIRADYTAELKSEI 531
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEE---------KDE 593
M RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E KD
Sbjct: 532 MAERQRATAMYLIDKFALRAGNEKDTENEAETVGCCSLKFEHVTLREPNTVIFDFLGKDS 591
Query: 594 KKIYN 598
+ YN
Sbjct: 592 IRFYN 596
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 36/49 (73%)
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+K + A+ + +++ LE+Q D+E NK +ALGTSK+NY+DPR++V +
Sbjct: 821 VEKLEAAVSKFDDRIKTLELQCADREGNKEVALGTSKINYIDPRLTVVF 869
>gi|225562965|gb|EEH11244.1| topoisomerase I [Ajellomyces capsulatus G186AR]
Length = 909
Score = 414 bits (1063), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/427 (48%), Positives = 277/427 (64%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSMTEKERA------ 53
M+ G + L+ +AEE+A F+ M+ + + F NF D+ + A
Sbjct: 302 MKYDGIPITLAPEAEEVAGFFGSMLNSTHNVENPTFQKNFFTDFTAYIKNSGGAKDPNGN 361
Query: 54 --VITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I KCDF+ + Y+ E+K++ EKK++K E + + Y C DG K+K+
Sbjct: 362 PVAIKSFDKCDFKPIFEYYEAARLEKKSLPSAEKKRLKAEKDELEAPYMYCMWDGRKQKV 421
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK GK+K RV E I IN K++KVP PPPGHKWKEV+HD +
Sbjct: 422 GNFRVEPPALFRGRGEHPKTGKVKTRVMPEQITINIGKEAKVPVPPPGHKWKEVKHDQEG 481
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 482 TWLAMWQENINGNYKYVMLAANSDIKGLSDYKKFEKARELKKHIDRIRKDYKKGLKHELM 541
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 542 SERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLKP-----PNTVIFDFLG 596
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + K+ D++FDRL TS LNKHLS M+GLTAKVFR
Sbjct: 597 KDSIRFYDEVEVDPQVFKNLKIFKKPPKREGDEIFDRLTTSALNKHLSNYMQGLTAKVFR 656
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L +L + AEKI YN ANR VA+LCNH+R+V SH M L ++
Sbjct: 657 TYNASYTMATLLKDLKSTG-TIAEKIKDYNDANRKVAILCNHKRTVTASHASQMEKLGDR 715
Query: 411 ISNKRKQ 417
I R Q
Sbjct: 716 IKGLRYQ 722
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 77/103 (74%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 482 TWLAMWQENINGNYKYVMLAANSDIKGLSDYKKFEKARELKKHIDRIRKDYKKGLKHELM 541
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 542 SERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTL 584
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 423 RALKDAKKAGESKAMT-DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPR 481
R K K E K +T +K + L +L +++ + +Q DKE NK +ALGTSK+NY+DPR
Sbjct: 812 RENKTKKVEAEGKGITIEKLENQLLKLSQRIENMSLQAEDKENNKEVALGTSKINYIDPR 871
Query: 482 ISVTW 486
++V +
Sbjct: 872 LTVVF 876
>gi|401428835|ref|XP_003878900.1| DNA topoisomerase IB, large subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495149|emb|CBZ30453.1| DNA topoisomerase IB, large subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 637
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/427 (50%), Positives = 287/427 (67%), Gaps = 7/427 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+E K++ + EE+AT +A M EH+Y E F NF + WR+ + +K + I L CDF
Sbjct: 71 GREFKMTPEEEEVATMFAVMKEHDYYRMEVFRRNFFESWRE-ILDKRQHPIRRLELCDFE 129
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + + + E++ +KEEKK IK++ +A + Y C DG +E++ NFR+EPPGLFRG
Sbjct: 130 PIYQWHLVQREKKLNRTKEEKKAIKEKQDAEAEPYRYCVWDGRREQVANFRVEPPGLFRG 189
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HP MGKLK RVQ EDI IN + ++ P PP GHKW V+HD+ VTWLA W ++V G
Sbjct: 190 RGKHPLMGKLKVRVQPEDITINIGETAEAPVPPAGHKWAAVQHDHTVTWLAMWRDSVAGN 249
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+ML PSS +KG+ D K+E ARKL ++ IR +Y D+KS ++ + QRAVA+YFID
Sbjct: 250 MKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEDFKSNDVHVAQRAVAMYFID 309
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
+LALR GNEK ED+ADTVGCCSLRVEHIQL + +V FDFLGKDSIRY N+V V
Sbjct: 310 RLALRVGNEKGEDEADTVGCCSLRVEHIQLMPDN-----IVRFDFLGKDSIRYQNDVAVL 364
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
V+ LQ F K D+FD+LN + LN HL M+GL+AKVFRTYNASITL + E
Sbjct: 365 PEVYALLQRFTRRKSPDMDIFDQLNPTQLNDHLKAFMDGLSAKVFRTYNASITLDRWFKE 424
Query: 365 -LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+DP +S A+K+ +N+AN VA+LCNHQ+SV K+ M L K RK + E+
Sbjct: 425 KPVDPKWSIADKLAYFNKANTEVAILCNHQKSVSKNFKLQMMQLTTKSEYTRKTIGLLEK 484
Query: 424 ALKDAKK 430
A AKK
Sbjct: 485 AEVTAKK 491
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 83/105 (79%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W ++V G +KY+ML PSS +KG+ D K+E ARKL ++ IR +Y D+KS
Sbjct: 235 TVTWLAMWRDSVAGNMKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEDFKSN 294
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
++ + QRAVA+YFID+LALR GNEK ED+ADTVGCCSLRVEHIQL
Sbjct: 295 DVHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQL 339
>gi|240279786|gb|EER43291.1| topoisomerase I [Ajellomyces capsulatus H143]
gi|325092918|gb|EGC46228.1| topoisomerase I [Ajellomyces capsulatus H88]
Length = 909
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/427 (48%), Positives = 277/427 (64%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSMTEKERA------ 53
M+ G + L+ +AEE+A F+ M+ + + F NF D+ + A
Sbjct: 302 MKYDGIPITLAPEAEEVAGFFGSMLNSTHNVENPTFQKNFFTDFTAYIKNSGGAKDPNGN 361
Query: 54 --VITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I KCDF+ + Y+ E+K++ EKK++K E + + Y C DG K+K+
Sbjct: 362 PVAIKSFDKCDFKPIFEYYEAARLEKKSLPSAEKKRLKAEKDELEAPYMYCMWDGRKQKV 421
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK GK+K RV E I IN K++KVP PPPGHKWKEV+HD +
Sbjct: 422 GNFRVEPPALFRGRGEHPKTGKVKTRVMPEQITINIGKEAKVPVPPPGHKWKEVKHDQEG 481
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 482 TWLAMWQENINGNYKYVMLAANSDIKGLSDYKKFEKARELKKHIDRIRKDYKKGLKHELM 541
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 542 SERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLKP-----PNTVIFDFLG 596
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + K+ D++FDRL TS LNKHLS M+GLTAKVFR
Sbjct: 597 KDSIRFYDEVEVDPQVFKNLKIFKKPPKREGDEIFDRLTTSALNKHLSNYMQGLTAKVFR 656
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L +L + AEKI YN ANR VA+LCNH+R+V SH M L ++
Sbjct: 657 TYNASYTMATLLKDLKSTG-TIAEKIKDYNDANRKVAILCNHKRTVTASHASQMEKLGDR 715
Query: 411 ISNKRKQ 417
I R Q
Sbjct: 716 IKGLRYQ 722
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 77/103 (74%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 482 TWLAMWQENINGNYKYVMLAANSDIKGLSDYKKFEKARELKKHIDRIRKDYKKGLKHELM 541
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 542 SERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTL 584
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 423 RALKDAKKAGESKAMT-DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPR 481
R K K E K +T +K + L +L +++ + +Q DKE NK +ALGTSK+NY+DPR
Sbjct: 812 RENKTKKVEAEGKGITIEKLENQLLKLSQRIENMSLQAEDKENNKEVALGTSKINYIDPR 871
Query: 482 ISVTW 486
++V +
Sbjct: 872 LTVVF 876
>gi|367018778|ref|XP_003658674.1| hypothetical protein MYCTH_2294738 [Myceliophthora thermophila ATCC
42464]
gi|347005941|gb|AEO53429.1| hypothetical protein MYCTH_2294738 [Myceliophthora thermophila ATCC
42464]
Length = 882
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/418 (51%), Positives = 279/418 (66%), Gaps = 16/418 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSMTEKERAV--------I 55
GK + L DAEE+ATF+ M+ + F NF D++ + + A I
Sbjct: 275 GKPVDLHVDAEEVATFFGSMLHSTQNVENPVFQKNFFNDFKDILKKTGGAKDLDGNPVDI 334
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
T+ K DF K++ ++ S+ +KA EKK K E E + Y C DG KE++GNFR
Sbjct: 335 TEFKKLDFTKIYEHYKAISDAKKARPAAEKKAEKAEKEKLEAPYMYCKWDGRKERVGNFR 394
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRGEHPK G +K+RV E + IN K++KVP PPPGHKWK V+HDN+ TWLA
Sbjct: 395 VEPPGLFRGRGEHPKTGTVKKRVMPEQVTINIGKEAKVPSPPPGHKWKAVQHDNKATWLA 454
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y + KS+ M RQ
Sbjct: 455 MWQENVNGNYKYVMLAANSAIKGQADYKKFEKARELKKHIDRIRADYTRELKSEVMADRQ 514
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E P V FDFLGKDS
Sbjct: 515 RATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLKE-----PNTVIFDFLGKDS 569
Query: 295 IRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IR+YNE V+++VFKNL++F + K+ DD+FDRL TS LNKHLS M GLTAKVFRTYN
Sbjct: 570 IRFYNEFTVDRQVFKNLKMFKKPPKEEGDDIFDRLTTSQLNKHLSSYMPGLTAKVFRTYN 629
Query: 354 ASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
AS T+ Q L L D + AEKI YN NR VA+LCNH+R+V SH+ M L ++I
Sbjct: 630 ASWTMSQLLKNLKVEDRTMAEKIKLYNDCNREVAILCNHKRTVGASHEAQMEKLGDRI 687
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 85/125 (68%), Gaps = 10/125 (8%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y + KS+
Sbjct: 450 ATWLAMWQENVNGNYKYVMLAANSAIKGQADYKKFEKARELKKHIDRIRADYTRELKSEV 509
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEE---------KDE 593
M RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E KD
Sbjct: 510 MADRQRATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLKEPNTVIFDFLGKDS 569
Query: 594 KKIYN 598
+ YN
Sbjct: 570 IRFYN 574
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 432 GESKAMTDKKKTA-LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
E K +T +K TA + +L E++ LE+Q D+E NK +ALGTSK+NY+DPR++V +
Sbjct: 792 AEGKGVTVEKLTAAVEKLNERIRTLELQSADREGNKEVALGTSKINYIDPRLTVAF 847
>gi|1762119|gb|AAB39507.1| topoisomerase I [Candida albicans]
Length = 780
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/409 (51%), Positives = 287/409 (70%), Gaps = 9/409 (2%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKER--AVITDLSKCDF 63
K + L +AEE+A FY M+E ++ F NF D+ + + E I K DF
Sbjct: 187 KPVNLPPEAEEVAGFYGAMLETDHAKNPVFQKNFFNDFLEVLKECGGCGVEIKKFEKLDF 246
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
KM+A+F + EE+KAMS+EEKK+IK+E E + Y C ++G KE +GNFRIEPPGLFR
Sbjct: 247 SKMYAHFEKLREEKKAMSREEKKRIKEEKEKEEEPYRTCYLNGRKELVGNFRIEPPGLFR 306
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPK GKLKRRV +E + +N KD+K+P PP GH+W E+RHDN+VTWLA W EN+
Sbjct: 307 GRGAHPKTGKLKRRVVSEQVTLNLGKDAKIPEPPAGHQWGEIRHDNEVTWLAMWKENISD 366
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
+KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++M+ RQ A A+Y I
Sbjct: 367 SLKYVRFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLI 426
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y EV V
Sbjct: 427 DVFALRAGGEKGEDEADTVGCCSLRYEHVTLKP-----PNKVIFDFLGKDSIRFYQEVEV 481
Query: 304 EKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
+K+VFKNL++F ++ K+ DDLFDR+N S++N+ L M+GLTAKVFRTYNAS T+Q Q+
Sbjct: 482 DKQVFKNLRIFKKSPKQPGDDLFDRINPSLVNRQLQNYMKGLTAKVFRTYNASKTMQDQI 541
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+ +++ + + AEK+ +N ANR VA+LCNHQR+V K+H S+ + +K+
Sbjct: 542 D-IIENEGTVAEKVAKFNAANRTVAILCNHQRTVSKTHGDSVQRINDKL 589
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 75/104 (72%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ +KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++
Sbjct: 354 VTWLAMWKENISDSLKYVRFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEK 413
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A+Y ID ALRAG EK ED+ADTVGCCSLR EH+ L
Sbjct: 414 MQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSLRYEHVTL 457
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 405 GNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEE 464
++K+K+ + K+ ++ LK K A +K K + L+ ++L + +Q DKE+
Sbjct: 666 SDIKDKLDKIDELEKEYQKELKTGKPIVTKNATVEKLKQQIETLENKILNVSIQLKDKED 725
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
N ++LGTSK+NY+DPR+ V +
Sbjct: 726 NSEVSLGTSKMNYIDPRLIVMF 747
>gi|2245428|gb|AAC39319.1| topoisomerase I [Emericella nidulans]
Length = 871
Score = 413 bits (1062), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/427 (48%), Positives = 285/427 (66%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSMTEKERAV----- 54
M+ G + L +AEE+A F+ M+ ++T F NF D+++ + + A
Sbjct: 264 MKYDGIPVDLHPEAEEVAGFFGSMLNSTQHTENPTFQKNFFADFKEILKKTGGAKDQKGN 323
Query: 55 ---ITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I + SKCD + + Y+ + +E+KA+ EKK++K E +A Y C DG K+K+
Sbjct: 324 KVDIKEFSKCDSQPIFQYYDAQRQEKKALPPAEKKRLKAEKDAQEAPYMYCMWDGRKQKV 383
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN K+++VPPPP GHKWKEV+HD +
Sbjct: 384 GNFRVEPPSLFRGRGEHPKTGRVKARVQPEQITINIGKEARVPPPPEGHKWKEVKHDQEG 443
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I +IR++YQ + K + M
Sbjct: 444 TWLAMWQENINGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIARIRKDYQKNLKHELM 503
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L P V FDFLG
Sbjct: 504 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLKP-----PNKVIFDFLG 558
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS+ M GLTAKVFR
Sbjct: 559 KDSIRFYDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSQYMPGLTAKVFR 618
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ + L M + AEK+ AYN ANR VA+LCNH+R+V M + E+
Sbjct: 619 TYNASHTMSELLKS-MHATGNNAEKVKAYNDANRKVAILCNHKRTVGAVTRDQMEKMSER 677
Query: 411 ISNKRKQ 417
I +R Q
Sbjct: 678 IKGQRYQ 684
>gi|295663479|ref|XP_002792292.1| DNA topoisomerase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278962|gb|EEH34528.1| DNA topoisomerase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 900
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/427 (49%), Positives = 278/427 (65%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDW----RKSMTEKE---- 51
M+ G + L+ +AEE+A F+ M+ + + F NF D+ +KS K+
Sbjct: 293 MKYDGVPITLAPEAEEVAGFFGSMLNSTHNVENPTFQKNFFNDFTAYVKKSGGAKDPNGN 352
Query: 52 RAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I KCDF+ + ++ E+KA+ EKK++K E + + Y C DG K+K+
Sbjct: 353 SVAINSFDKCDFKPIFEFYEAARLEKKALPAAEKKRLKAEKDELEAPYMYCMWDGRKQKV 412
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK GK+K RV E I IN K++KVP PP GHKWKEV+HD +
Sbjct: 413 GNFRVEPPALFRGRGEHPKTGKVKTRVMPEQITINIGKEAKVPTPPAGHKWKEVKHDQEG 472
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y+ K + M
Sbjct: 473 TWLAMWQENINGNYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRSDYKKGLKQELM 532
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 533 AERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLK-----PPNTVIFDFLG 587
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIRYY+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M GLTAKVFR
Sbjct: 588 KDSIRYYDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSNYMPGLTAKVFR 647
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M + AEKI YN ANR VA+LCNH+R+V SH M L ++
Sbjct: 648 TYNASYTMATLL-KGMKSTGTIAEKIKDYNDANRQVAILCNHKRTVTASHSTQMEKLGDR 706
Query: 411 ISNKRKQ 417
I + Q
Sbjct: 707 IKGLKYQ 713
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 77/103 (74%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y+ K + M
Sbjct: 473 TWLAMWQENINGNYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRSDYKKGLKQELM 532
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 533 AERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTL 575
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 7/57 (12%)
Query: 437 MTDKKKTALGRLKEQLLKL-------EVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ + K + +L+ QLLKL +Q DKE NK +ALGTSK+NY+DPR++V +
Sbjct: 811 VPEGKGVTVEKLENQLLKLGQRIENMSLQAEDKENNKEVALGTSKINYIDPRLTVVF 867
>gi|402081270|gb|EJT76415.1| DNA topoisomerase 1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 929
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 218/424 (51%), Positives = 284/424 (66%), Gaps = 19/424 (4%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWRKSMTEK--------ERAVITDL 58
++L +AEE+ATFY M+ E TK FN NF ++ + + + I +
Sbjct: 322 LELHVEAEEVATFYGSMLNSEVNTKNPTFNKNFFSGFKDKLKQTGGAKDKKGNKVDIKEF 381
Query: 59 SKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEP 118
K DF+ + A++ S+ +KA SKEEKK K+E + + + + C DG KEK+GNFR+EP
Sbjct: 382 EKLDFQPIFAHYQAMSDVKKARSKEEKKLDKEERDKLEEPFKFCKWDGRKEKVGNFRVEP 441
Query: 119 PGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWT 178
PGLFRGRGEHPK G +K RV E + IN K +KVPP PPGHKWK V+HDN+ TWLA W
Sbjct: 442 PGLFRGRGEHPKTGTVKERVMPEQVTINIGKGAKVPPAPPGHKWKAVQHDNKATWLAMWQ 501
Query: 179 ENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
ENV G KY+ML +S +KG+ D++K+E AR+L K I+KIR +Y D +S+ M RQRA
Sbjct: 502 ENVNGNYKYVMLAANSAVKGQADFKKFEKARELKKHIDKIRRDYTKDLRSEVMADRQRAT 561
Query: 239 ALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
A+YFIDKLALRAGNEKD E++A+TVGCCSL+ E++ L P V DFLGKDSIR+
Sbjct: 562 AMYFIDKLALRAGNEKDTENEAETVGCCSLKFENVTLVP-----PNTVYLDFLGKDSIRF 616
Query: 298 YNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASI 356
EV VE +VFKNL++F + K+ DD+FDRL TS LNKHLS M GLTAKVFRTYNAS
Sbjct: 617 EQEVEVEPQVFKNLKMFKKPPKEEGDDIFDRLTTSQLNKHLSSYMTGLTAKVFRTYNASY 676
Query: 357 TLQQQLNELMDPDF---SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN 413
T+ L EL P ++AEK+ AYN NR VA+LCNH+RS P +H M L ++I
Sbjct: 677 TMSTLLQELDGPKIAKMTDAEKLKAYNDCNRRVAILCNHKRSAPAAHGAQMEKLGDRIKG 736
Query: 414 KRKQ 417
++ Q
Sbjct: 737 QKYQ 740
>gi|297803422|ref|XP_002869595.1| hypothetical protein ARALYDRAFT_329014 [Arabidopsis lyrata subsp.
lyrata]
gi|297315431|gb|EFH45854.1| hypothetical protein ARALYDRAFT_329014 [Arabidopsis lyrata subsp.
lyrata]
Length = 785
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 230/495 (46%), Positives = 313/495 (63%), Gaps = 30/495 (6%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G + LS D EE+AT +A M E ++ K F NF DWRK + + VI L CDF
Sbjct: 276 GNPVNLSPDQEEVATMFAVMRETDFYNKPRFRENFWNDWRKLLGKNH--VIQKLDDCDFT 333
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + +++ +++KA ++ K+ ++Y +DG KEK+GNF +EPPGLFRG
Sbjct: 334 PIYDWHLEEKKKKKASPEKNPKQ--------GEKYMWAVVDGVKEKVGNFSVEPPGLFRG 385
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQ- 182
RGEHPK+GKLKRR+ DI +N KD+ +P P PG +WKEV+HDN V WLA W + +
Sbjct: 386 RGEHPKIGKLKRRIYPSDITLNIGKDAPIPECPIPGERWKEVKHDNTVIWLAIWKDPIHP 445
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
G+ KY+ L+ SS KG+ D +KYE AR L I IR Y ++ +K++ RQ AVA Y
Sbjct: 446 GRYKYVSLSASSSQKGQSDKKKYEKARNLKDHIENIRATYTKNFTAKDVSNRQIAVATYL 505
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+V +++ P + FDFLGKDSI+Y N V
Sbjct: 506 IDKLALRAGNEKDDDEADTVGCCTLKVGNVECVP-----PNKLKFDFLGKDSIQYVNTVE 560
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+K + F K SDDLFD L+TS LN HL EL+ GLTAKVFRTYNASITL L
Sbjct: 561 VEPLVYKAIAQFRAGKSNSDDLFDELDTSKLNAHLKELVTGLTAKVFRTYNASITLDVML 620
Query: 363 -NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
E + D +K++ Y +AN+ VA++CNHQR+V KSH + L KI ++ +K+
Sbjct: 621 RQETREGDVK--QKVVVYQQANKEVALICNHQRTVSKSHGAQIQRLAGKIEELKEGLKEL 678
Query: 422 ERALKDAKKAGESKAMTDKKKTA-------LGRLKEQLLKLEVQETD---KEENKTIALG 471
+ L+ AKK +D KKT ++ +Q +K+E E D KE+ KT+ALG
Sbjct: 679 KNNLERAKKGKSPLEGSDGKKTRNITPEAWEKKIAQQKMKIEKMEGDMQTKEDLKTVALG 738
Query: 472 TSKLNYLDPRISVTW 486
TSK+NY+DPRI+V W
Sbjct: 739 TSKINYMDPRITVAW 753
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQ-GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+V WLA W + + G+ KY+ L+ SS KG+ D +KYE AR L I IR Y ++ +
Sbjct: 432 TVIWLAIWKDPIHPGRYKYVSLSASSSQKGQSDKKKYEKARNLKDHIENIRATYTKNFTA 491
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 492 KDVSNRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 536
>gi|358377736|gb|EHK15419.1| hypothetical protein TRIVIDRAFT_37938 [Trichoderma virens Gv29-8]
Length = 914
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 225/432 (52%), Positives = 281/432 (65%), Gaps = 20/432 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYT---TKEAFNTNFMKDWRKSM-------TEK 50
M GK + L +AEE+ATF+ M+ T F NF D+ + + +
Sbjct: 299 MYYDGKPVTLGLEAEEVATFWVAMMTAASTHHLDNPIFRKNFFTDFSEYIKKHGAKDAQG 358
Query: 51 ERAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEK 110
+ I L KCDF KM Y+ K+E +K+M+KEEK K E +A+ Y CT DG K+K
Sbjct: 359 NKVDIKSLDKCDFSKMQEYWAAKNEAKKSMTKEEKAAAKAEKDALEAPYLYCTWDGRKQK 418
Query: 111 IGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQ 170
+GNFR+EPP LFRGRGEHPK GK+K RV E I IN K +KVP PP GHKWK V+HD +
Sbjct: 419 VGNFRVEPPSLFRGRGEHPKTGKVKVRVLPEQITINIGKGAKVPAPPAGHKWKAVQHDQK 478
Query: 171 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 230
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I+KIR +Y D KS+
Sbjct: 479 ATWLAMWQENINGAYKYVMLGAASDVKGQSDYKKFEKARELKKHIDKIRRDYTKDLKSEV 538
Query: 231 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDF 289
M RQRA A+Y IDKLALRAGNEKD E++ADTVGCCSL+ EHI L P V FDF
Sbjct: 539 MADRQRATAMYLIDKLALRAGNEKDTENEADTVGCCSLKYEHISLQP-----PDQVTFDF 593
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKK-GSDDLFDRLNTSVLNKHLSELMEGLTAKV 348
LGKDSIRY V+ +VFKNL+LF + K DDLFDRLNTS LNKHL+ M GLTAKV
Sbjct: 594 LGKDSIRYNETARVDPQVFKNLKLFKKAPKTDGDDLFDRLNTSQLNKHLNSYMPGLTAKV 653
Query: 349 FRTYNASITLQQQLNEL-MDPDF--SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMG 405
FRTYNAS T+ + L EL DP + AEK+ YN NR VA+LCNH+R+V H++ M
Sbjct: 654 FRTYNASHTMSELLKELGKDPRSRGTIAEKVKLYNDCNRKVAILCNHKRTVGAGHEQQMQ 713
Query: 406 NLKEKISNKRKQ 417
L ++I R Q
Sbjct: 714 KLGDRIKGLRYQ 725
>gi|310790996|gb|EFQ26529.1| eukaryotic DNA topoisomerase I [Glomerella graminicola M1.001]
Length = 907
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 218/425 (51%), Positives = 278/425 (65%), Gaps = 17/425 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTT-KEAFNTNFMKDWRKSMTEKERAV--------I 55
GK + L +AEE+A F+ M+ ++ F NF D++ + E A I
Sbjct: 300 GKPVNLPIEAEEVAGFFGAMLNSKHNVDNPVFQKNFFDDFKAVLKESGHATDKQGNKVDI 359
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
+ SK +F ++ Y+ Q+S RK S EKK K E + + + C DG KEK+GNFR
Sbjct: 360 REFSKMNFEQIFQYYEQQSAIRKNRSAAEKKAAKAEKDELEAPFMYCKWDGRKEKVGNFR 419
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPP LFRGRGEHPK GKLK+RV E I IN KD+KVP PP GHKWK V HDN+ TWLA
Sbjct: 420 VEPPSLFRGRGEHPKTGKLKKRVYPEQITINIGKDAKVPEPPKGHKWKAVVHDNKATWLA 479
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D +K+E AR+L K I+KIR +Y D KS+ M RQ
Sbjct: 480 MWQENINGAYKYVMLGAASAIKGQSDMKKFEKARELKKHIDKIRRDYTKDLKSEIMADRQ 539
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EHI L E P V FDFLGKDS
Sbjct: 540 RATAVYLIDKFALRAGNEKDAENEAETVGCCSLKYEHITLRE-----PNTVIFDFLGKDS 594
Query: 295 IRYYNEVPVEKRVFKNLQLFVENKK-GSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IR+Y+EV VEK+VFKNL+LF + K DD+FDRL T+ LN HL M GLTAKVFRTYN
Sbjct: 595 IRFYDEVTVEKQVFKNLKLFKKPPKTDGDDIFDRLTTTQLNNHLKNYMPGLTAKVFRTYN 654
Query: 354 ASITLQQQLNELMD-PDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKIS 412
AS T+ L +L+D + + AEK+ YN NR VA+LCNH+R+V +H+ M L ++I
Sbjct: 655 ASFTMSNLLQKLVDHKNLTIAEKVKLYNDCNREVAILCNHKRTVGAAHEAQMEKLGDRIK 714
Query: 413 NKRKQ 417
R Q
Sbjct: 715 GLRYQ 719
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 79/107 (73%), Gaps = 1/107 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D +K+E AR+L K I+KIR +Y D KS+
Sbjct: 475 ATWLAMWQENINGAYKYVMLGAASAIKGQSDMKKFEKARELKKHIDKIRRDYTKDLKSEI 534
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHE 589
M RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EHI L E
Sbjct: 535 MADRQRATAVYLIDKFALRAGNEKDAENEAETVGCCSLKYEHITLRE 581
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 447 RLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ +++ LE+Q D++ NK +AL TSK+NY+DPR++V +
Sbjct: 834 KFDDRVKTLELQAADRDGNKEVALSTSKINYIDPRLTVVF 873
>gi|68483489|ref|XP_714305.1| likely DNA topoisomerase I [Candida albicans SC5314]
gi|46435860|gb|EAK95233.1| likely DNA topoisomerase I [Candida albicans SC5314]
Length = 780
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/409 (51%), Positives = 286/409 (69%), Gaps = 9/409 (2%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE--KERAVITDLSKCDF 63
K + L +AEE+A FY M+E ++ F NF D+ + + E I K DF
Sbjct: 187 KPVNLPPEAEEVAGFYGAMLETDHAKNPVFQKNFFNDFLEVLKECGGCGVEIKKFEKLDF 246
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
KM+A+F + EE+KAMS+EEKK+IK+E E + Y C ++G KE +GNFRIEPPGLFR
Sbjct: 247 SKMYAHFEKLREEKKAMSREEKKRIKEEKEKEEEPYRTCYLNGRKELVGNFRIEPPGLFR 306
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPK GKLKRRV E + +N KD+K+P PP GH+W E+RHDN+VTWLA W EN+
Sbjct: 307 GRGAHPKTGKLKRRVVPEQVTLNLGKDAKIPEPPAGHQWGEIRHDNEVTWLAMWKENISD 366
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
+KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++M+ RQ A A+Y I
Sbjct: 367 SLKYVRFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLI 426
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y EV V
Sbjct: 427 DVFALRAGGEKGEDEADTVGCCSLRYEHVTLKP-----PNKVIFDFLGKDSIRFYQEVEV 481
Query: 304 EKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
+K+VFKNL++F ++ K+ DDLFDR+N S++N+ L M+GLTAKVFRTYNAS T+Q Q+
Sbjct: 482 DKQVFKNLRIFKKSPKQPGDDLFDRINPSLVNRQLQNYMKGLTAKVFRTYNASKTMQDQI 541
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+ +++ + + AEK+ +N ANR VA+LCNHQR+V K+H S+ + +K+
Sbjct: 542 D-IIENEGTVAEKVAKFNAANRTVAILCNHQRTVSKTHGDSVQRINDKL 589
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 75/104 (72%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ +KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++
Sbjct: 354 VTWLAMWKENISDSLKYVRFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEK 413
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A+Y ID ALRAG EK ED+ADTVGCCSLR EH+ L
Sbjct: 414 MQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSLRYEHVTL 457
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 405 GNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEE 464
++K+K+ + K+ ++ LK K A +K K + L+ ++L + +Q DKE+
Sbjct: 666 SDIKDKLDKIDELEKEYQKELKTGKPIVTKNATVEKLKQQIETLENKILNVSIQLKDKED 725
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
N ++LGTSK+NY+DPR+ V +
Sbjct: 726 NSEVSLGTSKMNYIDPRLIVMF 747
>gi|452980030|gb|EME79792.1| hypothetical protein MYCFIDRAFT_87962 [Pseudocercospora fijiensis
CIRAD86]
Length = 881
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/427 (50%), Positives = 287/427 (67%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWRKSM--------TEKE 51
M G + + +AEEIA + M+ + + F NF D+++ + ++ E
Sbjct: 274 MNYDGVPVSMHIEAEEIAYAFGAMLNSTHNVENPTFQKNFFADFKEVLDRTGHATDSKGE 333
Query: 52 RAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
+ IT KCDF+ + + + +KA+S EKKK+K E + Y C DG K+K+
Sbjct: 334 KVKITKFEKCDFKPIFNHVDAERAAKKALSGAEKKKLKAEKDEAEAPYMYCMWDGRKQKV 393
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPPGLFRGRGEHPK GK K+RVQ E I IN K++ VP PP GH+WKEV+HD +
Sbjct: 394 GNFRVEPPGLFRGRGEHPKTGKWKKRVQPEQITINIGKEAMVPKPPEGHQWKEVKHDQEG 453
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ + KS+ M
Sbjct: 454 TWLAMWQENINGAYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRKDYEKELKSEIM 513
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ E++ L P V FDFLG
Sbjct: 514 AERQRATAMYLIDRFALRAGNEKGEDEADTVGCCSLKFENVTL-----SPPNKVIFDFLG 568
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFV-ENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F KK D++FDRL TS LNKHLS M+GLTAKVFR
Sbjct: 569 KDSIRFYDEVEVDHQVFKNLKIFKRPPKKDGDEIFDRLTTSGLNKHLSNYMQGLTAKVFR 628
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ Q L E M + + AEK+LAYN ANR VA+LCNH+R+V SH + M ++EK
Sbjct: 629 TYNASYTMSQLLQE-MKAEGTIAEKVLAYNNANRRVAILCNHKRTVAASHAQQMEKMEEK 687
Query: 411 ISNKRKQ 417
I R Q
Sbjct: 688 IKGLRYQ 694
>gi|68484053|ref|XP_714029.1| likely DNA topoisomerase I [Candida albicans SC5314]
gi|46435553|gb|EAK94932.1| likely DNA topoisomerase I [Candida albicans SC5314]
Length = 780
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/409 (51%), Positives = 286/409 (69%), Gaps = 9/409 (2%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE--KERAVITDLSKCDF 63
K + L +AEE+A FY M+E ++ F NF D+ + + E I K DF
Sbjct: 187 KPVNLPPEAEEVAGFYGAMLETDHAKNPVFQKNFFNDFLEVLKECGGCGVEIKKFEKLDF 246
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
KM+A+F + EE+KAMS+EEKK+IK+E E + Y C ++G KE +GNFRIEPPGLFR
Sbjct: 247 SKMYAHFEKLREEKKAMSREEKKRIKEEKEKEEEPYRTCYLNGRKELVGNFRIEPPGLFR 306
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPK GKLKRRV E + +N KD+K+P PP GH+W E+RHDN+VTWLA W EN+
Sbjct: 307 GRGAHPKTGKLKRRVVPEQVTLNLGKDAKIPEPPAGHQWGEIRHDNEVTWLAMWKENISD 366
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
+KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++M+ RQ A A+Y I
Sbjct: 367 SLKYVRFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLI 426
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y EV V
Sbjct: 427 DVFALRAGGEKGEDEADTVGCCSLRYEHVTLK-----PPNKVIFDFLGKDSIRFYQEVEV 481
Query: 304 EKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
+K+VFKNL++F ++ K+ DDLFDR+N S++N+ L M+GLTAKVFRTYNAS T+Q Q+
Sbjct: 482 DKQVFKNLRIFKKSPKQPGDDLFDRINPSLVNRQLQNYMKGLTAKVFRTYNASKTMQDQI 541
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+ +++ + + AEK+ +N ANR VA+LCNHQR+V K+H S+ + +K+
Sbjct: 542 D-IIENEGTVAEKVAKFNAANRTVAILCNHQRTVSKTHGDSVQRINDKL 589
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 75/104 (72%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ +KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++
Sbjct: 354 VTWLAMWKENISDSLKYVRFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEK 413
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A+Y ID ALRAG EK ED+ADTVGCCSLR EH+ L
Sbjct: 414 MQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSLRYEHVTL 457
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 405 GNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEE 464
++K+K+ + K+ ++ LK K A +K K + L+ ++L + +Q DKE+
Sbjct: 666 SDIKDKLDKIDELEKEYQKELKTGKPIVTKNATVEKLKQQIETLENKILNVSIQLKDKED 725
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
N ++LGTSK+NY+DPR+ V +
Sbjct: 726 NSEVSLGTSKMNYIDPRLIVMF 747
>gi|225677787|gb|EEH16071.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb03]
Length = 905
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/427 (49%), Positives = 278/427 (65%), Gaps = 16/427 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDW----RKSMTEKER--- 52
M+ G + L+ +AEE+A F+ M+ + + F NF D+ +KS K+
Sbjct: 298 MKYDGVPITLAPEAEEVAGFFGSMLNSTHNVENPTFQKNFFNDFTAYVKKSGGAKDPNGN 357
Query: 53 -AVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I KCDF+ + ++ E+KA+ EKK++K E + + Y C DG K+K+
Sbjct: 358 PVAINSFDKCDFKPIFEFYEAARLEKKALPATEKKRLKAEKDELEAPYMYCMWDGRKQKV 417
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK GK+K RV E I IN K++KVP PP GHKWKEV+HD +
Sbjct: 418 GNFRVEPPALFRGRGEHPKTGKVKTRVMPEQITINIGKEAKVPIPPAGHKWKEVKHDQEG 477
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y+ K + M
Sbjct: 478 TWLAMWQENINGNYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRSDYKKGLKQELM 537
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 538 AERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLK-----PPNTVIFDFLG 592
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIRYY+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M GLTAKVFR
Sbjct: 593 KDSIRYYDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSNYMPGLTAKVFR 652
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M + AEKI YN ANR VA+LCNH+R+V SH M L ++
Sbjct: 653 TYNASYTMATLL-KGMKSTGTIAEKIKDYNDANRQVAILCNHKRTVTASHSTQMEKLGDR 711
Query: 411 ISNKRKQ 417
I + Q
Sbjct: 712 IKGLKYQ 718
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 77/103 (74%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y+ K + M
Sbjct: 478 TWLAMWQENINGNYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRSDYKKGLKQELM 537
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 538 AERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTL 580
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 7/57 (12%)
Query: 437 MTDKKKTALGRLKEQLLKL-------EVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ + K + +L+ QLLKL +Q DKE NK +ALGTSK+NY+DPR++V +
Sbjct: 816 VPEGKGVTVEKLENQLLKLGQRIENMSLQAEDKENNKEVALGTSKINYIDPRLTVVF 872
>gi|345566634|gb|EGX49576.1| hypothetical protein AOL_s00078g65 [Arthrobotrys oligospora ATCC
24927]
Length = 915
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/413 (50%), Positives = 267/413 (64%), Gaps = 15/413 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV------ 54
M+ G + L +AEE+A F A ++E + + F NF DW+ + E A
Sbjct: 309 MKYDGVPITLGPEAEEVAGFMAALLEAPQASDKKFLDNFFADWKTVLKETGGAKDKNGNT 368
Query: 55 --ITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIG 112
I KCDFR M +F E +KAMS EKK+ K E E I + Y C DG KEK+G
Sbjct: 369 VKIQSYDKCDFRPMFEHFTALKEAKKAMSATEKKEAKAEREKIEEPYQYCLWDGRKEKVG 428
Query: 113 NFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVT 172
NFR+EPPGLFRGRGEHPK G K+RV E I +N K + VPPPP GHKW + H+ +
Sbjct: 429 NFRVEPPGLFRGRGEHPKRGMYKKRVAPEQITLNIGKGATVPPPPKGHKWGNIVHNQTAS 488
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA WTEN+ G VKY+ML +S LKG+ D++KYE AR+L K I KIR Y + K+
Sbjct: 489 WLAMWTENINGNVKYVMLAVTSSLKGQSDFKKYEKARELKKHIEKIRREYTQELSDKQTM 548
Query: 233 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGK 292
+RQRA A+Y IDK ALRAGNEK +D+ADTVGCCSLR EH+ L E P +V F FLGK
Sbjct: 549 VRQRATAIYLIDKFALRAGNEKGDDEADTVGCCSLRYEHVTLEE-----PNLVHFKFLGK 603
Query: 293 DSIRYYNEVPVEKRVFKNLQLFVENKKG-SDDLFDRLNTSVLNKHLSELMEGLTAKVFRT 351
DSI++ V+K+VFKNL++F + KG DDLFDR+ T +N+ E M GL+AKVFRT
Sbjct: 604 DSIQFDQVYTVDKQVFKNLRIFKKAPKGPGDDLFDRIQTKHINEWFKEHMPGLSAKVFRT 663
Query: 352 YNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSM 404
YNAS T+QQ+L+++ + + AEK AYN AN+ VA+LCNHQR+ K HD M
Sbjct: 664 YNASWTMQQELSKMKNIG-TIAEKHAAYNEANKKVAILCNHQRTKSKMHDSQM 715
>gi|2501243|sp|Q00313.1|TOP1_CANAL RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|1465731|gb|AAC49381.1| topoisomerase type I [Candida albicans]
Length = 778
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/409 (51%), Positives = 286/409 (69%), Gaps = 9/409 (2%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKER--AVITDLSKCDF 63
K + L +AEE+A FY M+E ++ F NF D+ + + E I K DF
Sbjct: 185 KPVNLPPEAEEVAGFYGAMLETDHAKNPVFQKNFFNDFLEVLKECGGCGVEIKKFEKLDF 244
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
KM+A+F + EE+KAMS+EEKK+IK+E E + Y C ++G KE +GNFRIEPPGLFR
Sbjct: 245 SKMYAHFEKLREEKKAMSREEKKRIKEEKEKEEEPYRTCYLNGRKELVGNFRIEPPGLFR 304
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPK GKLKRRV +E + +N KD+K+P PP GH+W E+RHDN+VTWLA W EN+
Sbjct: 305 GRGAHPKTGKLKRRVVSEQVTLNLGKDAKIPEPPAGHQWGEIRHDNEVTWLAMWKENISD 364
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
+KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++M+ RQ A A+Y I
Sbjct: 365 SLKYVRFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLI 424
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D ALRAG EK ED+ADTVGCCSLR EH+ L P V FD LGKDSIR+Y EV V
Sbjct: 425 DVFALRAGGEKGEDEADTVGCCSLRYEHVTLKP-----PNKVIFDLLGKDSIRFYQEVEV 479
Query: 304 EKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
+K+VFKNL++F ++ K+ DDLFDR+N S++N+ L M+GLTAKVFRTYNAS T+Q Q+
Sbjct: 480 DKQVFKNLRIFKKSPKQPGDDLFDRINPSLVNRQLQNYMKGLTAKVFRTYNASKTMQDQI 539
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+ +++ + + AEK+ +N ANR VA+LCNHQR+V K+H S+ + +K+
Sbjct: 540 D-IIENEGTVAEKVAKFNAANRTVAILCNHQRTVSKTHGDSVQRINDKL 587
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 75/104 (72%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ +KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++
Sbjct: 352 VTWLAMWKENISDSLKYVRFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEK 411
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A+Y ID ALRAG EK ED+ADTVGCCSLR EH+ L
Sbjct: 412 MQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSLRYEHVTL 455
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 405 GNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEE 464
++K+K+ + K+ ++ LK K A +K K + L+ ++L + +Q DKE+
Sbjct: 664 SDIKDKLDKIDELEKEYQKELKTGKPIVTKNATVEKLKQQIETLENRILNVSIQLKDKED 723
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
N ++LGTSK+NY+DPR+ V +
Sbjct: 724 NSEVSLGTSKMNYIDPRLIVMF 745
>gi|190347829|gb|EDK40177.2| hypothetical protein PGUG_04275 [Meyerozyma guilliermondii ATCC
6260]
Length = 754
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/414 (50%), Positives = 279/414 (67%), Gaps = 9/414 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVI--TDL 58
M GK + L+ AEE+A F+A M+E ++ F NF D+ + + E A + D
Sbjct: 156 MYYDGKPVDLAPAAEEVAGFFAAMLETDHAQNPVFQKNFWNDFLQVVKESGGANVEMKDF 215
Query: 59 SKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEP 118
+K DF KMHA+F E++K MS++EKK +K+ E + Y C ++G KE++GNFR+EP
Sbjct: 216 TKADFTKMHAHFEMLKEQKKNMSRDEKKALKEAKEKEEEPYKTCLLNGRKEQVGNFRVEP 275
Query: 119 PGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWT 178
PGLFRGRG HPK GKLK+RV EDI +N SK+ KVP PP GHKW EVRHDN V WLA W
Sbjct: 276 PGLFRGRGAHPKTGKLKKRVYPEDITLNLSKECKVPEPPAGHKWGEVRHDNTVAWLAMWK 335
Query: 179 ENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
EN+ +KY+ +S +KG+ D++K+ETAR L I+ IR +Y K M+ RQ A
Sbjct: 336 ENISDSLKYVRFAANSSVKGQSDFKKFETARNLKFHIDAIRTDYTKLLKDPLMQNRQMAT 395
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y ID ALRAG EK +D+ADTVGCCSLR EHI L P V FDFLGKDSIR+Y
Sbjct: 396 ATYLIDVFALRAGGEKGDDEADTVGCCSLRYEHITLK-----PPNQVIFDFLGKDSIRFY 450
Query: 299 NEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
EV V+K+VFKNL++F + K+ DDLFDR++ +LNK M+GLTAKVFRTYNAS T
Sbjct: 451 QEVEVDKQVFKNLRIFKKPPKQPGDDLFDRISPPMLNKQFQGYMKGLTAKVFRTYNASKT 510
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+Q Q+ +L+ + + AEK++ +N ANR VA+LCNHQR+V K+H S+ + ++I
Sbjct: 511 MQDQI-DLIPNEGTVAEKVVRFNAANRTVAILCNHQRTVSKTHGHSVQRIHDRI 563
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 69/105 (65%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA W EN+ +KY+ +S +KG+ D++K+ETAR L I+ IR +Y K
Sbjct: 327 TVAWLAMWKENISDSLKYVRFAANSSVKGQSDFKKFETARNLKFHIDAIRTDYTKLLKDP 386
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A Y ID ALRAG EK +D+ADTVGCCSLR EHI L
Sbjct: 387 LMQNRQMATATYLIDVFALRAGGEKGDDEADTVGCCSLRYEHITL 431
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 407 LKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENK 466
L EK+ ++Q KD LK K +S +K K + +L +++ Q DKE+N
Sbjct: 642 LDEKMEKIKEQEKDLAEELKTGKPVMKSTTTVEKLKAQVEKLDGRIVNTTFQLQDKEDNS 701
Query: 467 TIALGTSKLNYLDPRISVTW 486
++LGTSKLNY+DPR++V +
Sbjct: 702 EVSLGTSKLNYIDPRLTVMF 721
>gi|146415152|ref|XP_001483546.1| hypothetical protein PGUG_04275 [Meyerozyma guilliermondii ATCC
6260]
Length = 754
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/414 (50%), Positives = 279/414 (67%), Gaps = 9/414 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVIT--DL 58
M GK + L+ AEE+A F+A M+E ++ F NF D+ + + E A + D
Sbjct: 156 MYYDGKPVDLAPAAEEVAGFFAAMLETDHAQNPVFQKNFWNDFLQVVKESGGANVEMKDF 215
Query: 59 SKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEP 118
+K DF KMHA+F E++K MS++EKK +K+ E + Y C ++G KE++GNFR+EP
Sbjct: 216 TKADFTKMHAHFEMLKEQKKNMSRDEKKALKEAKEKEEEPYKTCLLNGRKEQVGNFRVEP 275
Query: 119 PGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWT 178
PGLFRGRG HPK GKLK+RV EDI +N SK+ KVP PP GHKW EVRHDN V WLA W
Sbjct: 276 PGLFRGRGAHPKTGKLKKRVYPEDITLNLSKECKVPEPPAGHKWGEVRHDNTVAWLAMWK 335
Query: 179 ENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
EN+ +KY+ +S +KG+ D++K+ETAR L I+ IR +Y K M+ RQ A
Sbjct: 336 ENISDSLKYVRFAANSSVKGQSDFKKFETARNLKFHIDAIRTDYTKLLKDPLMQNRQMAT 395
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y ID ALRAG EK +D+ADTVGCCSLR EHI L P V FDFLGKDSIR+Y
Sbjct: 396 ATYLIDVFALRAGGEKGDDEADTVGCCSLRYEHITLK-----PPNQVIFDFLGKDSIRFY 450
Query: 299 NEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
EV V+K+VFKNL++F + K+ DDLFDR++ +LNK M+GLTAKVFRTYNAS T
Sbjct: 451 QEVEVDKQVFKNLRIFKKPPKQPGDDLFDRISPPMLNKQFQGYMKGLTAKVFRTYNASKT 510
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+Q Q+ +L+ + + AEK++ +N ANR VA+LCNHQR+V K+H S+ + ++I
Sbjct: 511 MQDQI-DLIPNEGTVAEKVVRFNAANRTVAILCNHQRTVSKTHGHSVQRIHDRI 563
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 69/105 (65%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA W EN+ +KY+ +S +KG+ D++K+ETAR L I+ IR +Y K
Sbjct: 327 TVAWLAMWKENISDSLKYVRFAANSSVKGQSDFKKFETARNLKFHIDAIRTDYTKLLKDP 386
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A Y ID ALRAG EK +D+ADTVGCCSLR EHI L
Sbjct: 387 LMQNRQMATATYLIDVFALRAGGEKGDDEADTVGCCSLRYEHITL 431
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%)
Query: 407 LKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENK 466
L EK+ ++Q KD LK K +S +K K + +L +++ Q DKE+N
Sbjct: 642 LDEKMEKIKEQEKDLAEELKTGKPVMKSTTTVEKLKAQVEKLDGRIVNTTFQLQDKEDNS 701
Query: 467 TIALGTSKLNYLDPRISVTW 486
++LGTSKLNY+DPR++V +
Sbjct: 702 EVSLGTSKLNYIDPRLTVMF 721
>gi|392578649|gb|EIW71777.1| hypothetical protein TREMEDRAFT_43061 [Tremella mesenterica DSM
1558]
Length = 859
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/415 (52%), Positives = 288/415 (69%), Gaps = 10/415 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE---KERAVITD 57
M+ G + L ++EE+A F+A M+E ++ E F NF +D++ + E KE +
Sbjct: 260 MKYDGVSLTLPPESEEVAGFFAAMLETDHAQDEKFKENFFRDFQAVLDEHPPKEGVKVKS 319
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
L KCDFR M +F ++ E++K+M+KEEKKKIK++ + + Y TIDG KEK+GNFR E
Sbjct: 320 LEKCDFRPMFEHFEKEKEKKKSMTKEEKKKIKEDKDKLEAPYLYATIDGRKEKLGNFRAE 379
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRGEHPK G LK R++ EDII+N +++ VP P WK+++HDN VTWLA W
Sbjct: 380 PPGLFRGRGEHPKKGTLKLRLRPEDIILNIGENAPVPVPNIPGTWKDLQHDNTVTWLAHW 439
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
ENV GQ KY+ L+ S KG+ D K+E AR+L K +++IR++Y D KSK M RQRA
Sbjct: 440 KENVNGQSKYVFLSAGSSWKGQSDRSKFEKARELIKHVDRIRKDYTEDLKSKIMADRQRA 499
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
ALYFID+LALRAGNEK ED+ADTVGCCSLR EH+ L P V FDFLGKDS+R+
Sbjct: 500 TALYFIDRLALRAGNEKGEDEADTVGCCSLRYEHVTLE-----PPNKVIFDFLGKDSMRF 554
Query: 298 YNEVPVEKRVFKNLQLFVENKKG-SDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASI 356
+ EV V+ +VFKN+++F KG DDLFDRL T+ LN++L+ M+GLTAKVFRTYNAS
Sbjct: 555 HQEVEVDAQVFKNIRIFKAEPKGKGDDLFDRLTTTGLNQYLNGQMKGLTAKVFRTYNASW 614
Query: 357 TLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
T QQQL D + AEKI AYN ANR VA+LCNHQ++V K +S + +K+
Sbjct: 615 TFQQQLKHTPK-DGTVAEKIAAYNTANRDVAILCNHQKTVSKGFAESFAKMGDKV 668
>gi|453085697|gb|EMF13740.1| topoisomerase I [Mycosphaerella populorum SO2202]
Length = 898
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/423 (48%), Positives = 283/423 (66%), Gaps = 16/423 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSMT--------EKERAVI 55
G + L +DAEEIA + M+ + + F NF D+++ + + ++ I
Sbjct: 295 GTPVTLHKDAEEIAHAFGSMLNSTHNVENPTFQKNFFADFKEMLDKTGHGKDRDGKQVKI 354
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
KCDF+ + + + + +KA+ EKK++K E + Y C DG K+K+GNFR
Sbjct: 355 LKFEKCDFKPIFNHVDAERQAKKALPAAEKKRLKAEKDEAEAPYQYCKWDGRKQKVGNFR 414
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRGEHPK GK K+RV E I IN KD+ VP PP GH WKEV++D + TWLA
Sbjct: 415 VEPPGLFRGRGEHPKTGKFKKRVLPEQITINIGKDAMVPVPPEGHTWKEVKNDQEGTWLA 474
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ + KS+ M RQ
Sbjct: 475 MWQENINGAYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRKDYEKELKSEVMANRQ 534
Query: 236 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSI 295
RA A Y ID+ ALRAGNEK +D+ADTVGCCSL+ E++ L P V FDFLGKDSI
Sbjct: 535 RATATYLIDRFALRAGNEKGDDEADTVGCCSLKFENVTLK-----PPNKVIFDFLGKDSI 589
Query: 296 RYYNEVPVEKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
R+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M GLTAKVFRTYNA
Sbjct: 590 RFYDEVDVDAQVFKNLKIFKRSPKKEGDEIFDRLTTSGLNKHLSNYMTGLTAKVFRTYNA 649
Query: 355 SITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNK 414
S T+ L + M + + A+K+LAYN ANR VA+LCNH+R+V SH++ M +++KI+
Sbjct: 650 SFTMATLLKD-MKAEGTVADKVLAYNAANRKVAILCNHKRTVAASHEQQMEKMEDKINGL 708
Query: 415 RKQ 417
R Q
Sbjct: 709 RYQ 711
>gi|255712819|ref|XP_002552692.1| KLTH0C10890p [Lachancea thermotolerans]
gi|238934071|emb|CAR22254.1| KLTH0C10890p [Lachancea thermotolerans CBS 6340]
Length = 756
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/412 (51%), Positives = 273/412 (66%), Gaps = 11/412 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDW----RKSMTEKERAVITDLSK 60
GK + L AEE+A F+A ++E ++ F NF D+ R++ K A I
Sbjct: 159 GKPVDLPPQAEEVAGFFAALLESDHAQNPVFQKNFFNDFLDVLRENGGPKNGAEIEKFEL 218
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KM YF + E++K +S +EKKK+K E E + + C +DG KE++GNFRIEPPG
Sbjct: 219 CDFSKMFDYFQLQKEQKKQLSSQEKKKLKIEKEQFEEPFKFCFLDGRKEQVGNFRIEPPG 278
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV ED+++N K++++P P GHKW E+RHD+ V WLA W EN
Sbjct: 279 LFRGRGAHPKTGKLKRRVYPEDVVLNLDKEAEIPKAPEGHKWGEIRHDSTVQWLAMWREN 338
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ +S LKG D++K+E AR+L I+ IR +Y + KSK M RQ AVA
Sbjct: 339 ISNSFKYVRFAANSSLKGMSDFKKFEKARQLRGFIDAIRADYTKNLKSKVMLERQIAVAC 398
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
YFID ALRAG EK +D+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y E
Sbjct: 399 YFIDVFALRAGGEKADDEADTVGCCSLRYEHVTLK-----PPNTVIFDFLGKDSIRFYQE 453
Query: 301 VPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V K+VFKNL +F + KK LFDRL+ S+LNKHL M GLTAKVFRTYNAS T+Q
Sbjct: 454 VEVTKQVFKNLTIFKKPPKKPGHQLFDRLDPSILNKHLQNYMPGLTAKVFRTYNASKTMQ 513
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
QL+ L+ + + AEK+L YN ANR VA+LCNHQR+V K H S+ E+I
Sbjct: 514 DQLD-LIPNEGTVAEKMLKYNAANRTVAILCNHQRTVTKGHAASVQKATERI 564
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 71/105 (67%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA W EN+ KY+ +S LKG D++K+E AR+L I+ IR +Y + KSK
Sbjct: 328 TVQWLAMWRENISNSFKYVRFAANSSLKGMSDFKKFEKARQLRGFIDAIRADYTKNLKSK 387
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M RQ AVA YFID ALRAG EK +D+ADTVGCCSLR EH+ L
Sbjct: 388 VMLERQIAVACYFIDVFALRAGGEKADDEADTVGCCSLRYEHVTL 432
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+K K + +L +++ +Q DKE+N +ALGTSK+NY+DPR+SV +
Sbjct: 675 AEKLKMQIEKLDQRIETATIQLKDKEDNSQVALGTSKINYIDPRLSVVF 723
>gi|358391412|gb|EHK40816.1| hypothetical protein TRIATDRAFT_301595 [Trichoderma atroviride IMI
206040]
Length = 912
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 222/428 (51%), Positives = 278/428 (64%), Gaps = 20/428 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYT---TKEAFNTNFMKDWRKSM-------TEKERAV 54
GK + LS +AEE+ATF+A M+ T F NF D+ + +
Sbjct: 301 GKPVTLSPEAEEVATFWASMMTAASTHHLDNPVFRKNFFTDFSDFIKKHGAKDASGNKID 360
Query: 55 ITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNF 114
I CDF K+ Y+ ++E +KAM+KEEK K E +A+ Y CT DG K+K+GNF
Sbjct: 361 IKSFDLCDFSKIAEYWAARNEAKKAMTKEEKAAAKAEKDALEAPYLYCTWDGRKQKVGNF 420
Query: 115 RIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWL 174
R+EPP LFRGRGEHPK GK+K RV E I IN K +KVP PP GHKWK V+HD + TWL
Sbjct: 421 RVEPPSLFRGRGEHPKTGKVKTRVLPEQITINIGKGAKVPTPPAGHKWKAVQHDQKATWL 480
Query: 175 ASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIR 234
A W EN+ G KY+ML +S +KG+ D++K+E AR+L K I+KIR +Y D KS+ M R
Sbjct: 481 AMWQENINGAYKYVMLGAASDVKGQSDFKKFEKARELKKHIDKIRRDYTKDLKSEVMADR 540
Query: 235 QRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKD 293
QRA A+Y IDKLALRAGNEKD E++ADTVGCCSL+ EHI L P V FDFLGKD
Sbjct: 541 QRATAMYLIDKLALRAGNEKDTENEADTVGCCSLKYEHISLQP-----PDQVTFDFLGKD 595
Query: 294 SIRYYNEVPVEKRVFKNLQLFVENKK-GSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTY 352
SIRY V+ +VFKNL+LF + K DDLFDRLNTS LNKHL+ M GLTAKVFRTY
Sbjct: 596 SIRYNETARVDPQVFKNLKLFKKAPKTDGDDLFDRLNTSQLNKHLNSYMTGLTAKVFRTY 655
Query: 353 NASITLQQQLNEL-MDPDF--SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
NAS T+ + L EL DP + A+K+ YN NR VA+LCNH+R+V H++ M L +
Sbjct: 656 NASHTMSELLKELGKDPRSRGTIADKVKLYNDCNRKVAILCNHKRTVGAGHEQQMQKLGD 715
Query: 410 KISNKRKQ 417
+I R Q
Sbjct: 716 RIKGLRYQ 723
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/106 (60%), Positives = 80/106 (75%), Gaps = 1/106 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I+KIR +Y D KS+
Sbjct: 477 ATWLAMWQENINGAYKYVMLGAASDVKGQSDFKKFEKARELKKHIDKIRRDYTKDLKSEV 536
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLH 588
M RQRA A+Y IDKLALRAGNEKD E++ADTVGCCSL+ EHI L
Sbjct: 537 MADRQRATAMYLIDKLALRAGNEKDTENEADTVGCCSLKYEHISLQ 582
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 15/102 (14%)
Query: 390 CNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKA-----MTDKKKTA 444
N +R +P+ LKE++ VK+ E K K G+ +A DK +A
Sbjct: 786 ANKERVMPEKE------LKERLG----AVKEMEARFKKENKTGKVEAEGRGASVDKYLSA 835
Query: 445 LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ ++ E++ LE Q D++ NK +AL TSK+NY+DPR++V +
Sbjct: 836 IEKIDERIRVLETQAEDRDGNKEVALSTSKINYIDPRLTVVF 877
>gi|156045655|ref|XP_001589383.1| hypothetical protein SS1G_10018 [Sclerotinia sclerotiorum 1980]
gi|154694411|gb|EDN94149.1| hypothetical protein SS1G_10018 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 911
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/424 (49%), Positives = 277/424 (65%), Gaps = 16/424 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSMT--------EKERAVI 55
G + LS ++EEIA F+ M+ + + F NF KD+ S+ + + I
Sbjct: 304 GIPLTLSLESEEIAGFFGAMLNSTHNVENPTFQKNFFKDFTDSVKKTGGAKDKDGNKVAI 363
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
D SK DF+ + Y+ KS ERKA S EKK K + Y C DG KE +GNFR
Sbjct: 364 KDFSKLDFKPIFEYYDGKSTERKARSAAEKKAEKAAKDEAEAPYKTCIWDGRKEDVGNFR 423
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRGEHPK GK+K RV E I IN K++ VP PP GHKWK ++HDN+ TWLA
Sbjct: 424 VEPPGLFRGRGEHPKTGKVKLRVTPEQITINIGKEATVPSPPEGHKWKAIQHDNKATWLA 483
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML S +KG+ D++K+E AR+L + I++IR++Y D ++ M RQ
Sbjct: 484 MWQENINGAYKYVMLAAKSSIKGQSDYKKFEKARELKEHIDRIRKDYTQDLHAELMADRQ 543
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L P V FDFLGKDS
Sbjct: 544 RATAVYLIDKFALRAGNEKDAENEAETVGCCSLKYEHVTLKP-----PNTVIFDFLGKDS 598
Query: 295 IRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IR+Y+EV V+ +VFKNL++F + KK DD+FDRLNT+ LNKHL+ M GL+AKVFRTYN
Sbjct: 599 IRFYDEVTVDPQVFKNLKIFKKAPKKNGDDIFDRLNTTQLNKHLTNYMPGLSAKVFRTYN 658
Query: 354 ASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN 413
AS T+ L +L + D S EKI YN NR VA+LCNH+R+V SH+ ++ + + +
Sbjct: 659 ASWTMSDLLKKLKNSDISMQEKIKLYNDCNRKVAILCNHKRTVGASHEAAIEKMDDAVKG 718
Query: 414 KRKQ 417
+ Q
Sbjct: 719 LKYQ 722
>gi|168041204|ref|XP_001773082.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675629|gb|EDQ62122.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 502
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 232/479 (48%), Positives = 305/479 (63%), Gaps = 21/479 (4%)
Query: 20 FYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKA 79
+A MIE +Y KE F NF DW+ + + VI CDF + + ++ E +K
Sbjct: 1 MFAVMIETDYAKKERFVKNFWDDWKPYLGKNH--VIKKFELCDFTPIFQWHAREKERKKN 58
Query: 80 MSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQ 139
MS EEKK++K+E A ++Y +DG KEK+GNFR+EPPGLFRGRG+HPKMGKLK R+
Sbjct: 59 MSAEEKKRLKEEKLAAEEKYMWAVVDGVKEKVGNFRVEPPGLFRGRGDHPKMGKLKTRIL 118
Query: 140 AEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENVQG-QVKYIMLNPSSKLK 197
DI+IN KD+ VP P PG KWKEVRHDN VTWLA W + + + KY+ L SS LK
Sbjct: 119 PHDIVINIGKDAPVPECPIPGQKWKEVRHDNTVTWLAYWKDPINDKEFKYVFLAASSSLK 178
Query: 198 GEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDED 257
G+ D KYE AR L I+ IR Y D+ S + +Q AVA Y ID+LALRAGNEKDED
Sbjct: 179 GQSDMLKYEKARTLKDYIDNIRRTYTKDFSSSDPTKQQIAVATYLIDRLALRAGNEKDED 238
Query: 258 QADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVEN 317
+ADTVGCCSL+VEH+ L P + FDFLGKDSIRY+N V V++RV+K + F +
Sbjct: 239 EADTVGCCSLKVEHVSLIA-----PKSLQFDFLGKDSIRYFNTVEVDERVYKAIGQFKKG 293
Query: 318 KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKIL 377
KKG DDLF+RL+T+ LN HL +M GLTAKVFRTYNASITL L + + E I
Sbjct: 294 KKGGDDLFERLDTTKLNLHLKGIMPGLTAKVFRTYNASITLDTLLQDTRGE--TTIEIIA 351
Query: 378 AYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVK----DAERALKDAKKAGE 433
Y RAN+ VA+LCNHQRSV K H M L+ K+ +Q++ D +RA + +
Sbjct: 352 DYQRANKEVAILCNHQRSVSKGHSAQMERLELKMQELEEQLEELETDLDRAKRGKPPLKD 411
Query: 434 SKAMTDKKKTA------LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
S+ + +T + +++ K+ + K++ KT+ALGTSK+NY+DPRI+V W
Sbjct: 412 SEGKVKRNQTPEALEKKIASTTQKIDKMRLDMRVKDDLKTVALGTSKINYMDPRITVAW 470
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L SS LKG+ D KYE AR L I+ IR Y D+ S
Sbjct: 150 TVTWLAYWKDPINDKEFKYVFLAASSSLKGQSDMLKYEKARTLKDYIDNIRRTYTKDFSS 209
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+ +Q AVA Y ID+LALRAGNEKDED+ADTVGCCSL+VEH+ L
Sbjct: 210 SDPTKQQIAVATYLIDRLALRAGNEKDEDEADTVGCCSLKVEHVSL 255
>gi|8132028|gb|AAF73185.1|AF150877_1 DNA topoisomerase I [Leishmania donovani donovani]
Length = 949
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/427 (50%), Positives = 289/427 (67%), Gaps = 8/427 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+E K++ + EE+AT +A M EH+Y E F NF + WR+ + +K + I L CDF
Sbjct: 386 GREFKMTPEEEEVATMFAVMKEHDYYRMEVFRRNFFESWRE-ILDKRQHPIRRLELCDFE 444
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + + + E++ + +KEEKK IK++ +A + Y C DG +E++ NFR+EPPGLFRG
Sbjct: 445 PIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEPYRYCVWDGRREQVANFRVEPPGLFRG 504
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HP MGKLK RVQ EDI IN + ++VP PP GHKW V+HD+ VTWLA W ++V G
Sbjct: 505 RGKHPLMGKLKVRVQPEDITINIGETAEVPVPPAGHKWAAVQHDHTVTWLAMWRDSVAGN 564
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+ML PSS +KG+ D K+E ARKL ++ IR +Y D+KS ++ + QRAVA+Y ID
Sbjct: 565 MKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEDFKSNDLHVAQRAVAMY-ID 623
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
+LALR GNEK ED+ADTVGCCSLRVEHIQL + +V FDFLGKDSIRY N+V V
Sbjct: 624 RLALRVGNEKGEDEADTVGCCSLRVEHIQLMPDN-----IVRFDFLGKDSIRYQNDVAVL 678
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
V+ LQ F K D+FD+LN + LN HL M+GL+AKVFRTYNASITL + E
Sbjct: 679 PEVYALLQRFTRRKSPGMDIFDQLNPTQLNDHLKSFMDGLSAKVFRTYNASITLDRWFKE 738
Query: 365 -LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+DP +S A+K+ +N+AN VA+LCNHQ+SV K+ M L K RK ++ E+
Sbjct: 739 KPVDPKWSTADKLAYFNKANTEVAILCNHQKSVSKNFKLQMMQLTTKSEYTRKTIELLEK 798
Query: 424 ALKDAKK 430
A AKK
Sbjct: 799 AEVTAKK 805
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 82/105 (78%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W ++V G +KY+ML PSS +KG+ D K+E ARKL ++ IR +Y D+KS
Sbjct: 550 TVTWLAMWRDSVAGNMKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEDFKSN 609
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
++ + QRAVA+Y ID+LALR GNEK ED+ADTVGCCSLRVEHIQL
Sbjct: 610 DLHVAQRAVAMY-IDRLALRVGNEKGEDEADTVGCCSLRVEHIQL 653
>gi|380495631|emb|CCF32247.1| eukaryotic DNA topoisomerase I [Colletotrichum higginsianum]
Length = 918
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/425 (50%), Positives = 277/425 (65%), Gaps = 17/425 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTT-KEAFNTNFMKDWRKSMTEKERAV--------I 55
GK + L +AEE+A F+ M+ ++ F NF D++ + E A +
Sbjct: 311 GKPVNLPIEAEEVAGFFGAMLNSKHNVDNPVFQKNFFDDFKAVLKESGHATDKQGNKVDL 370
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
+ SK +F ++ Y+ Q+S RK S EKK K E + + + C DG KEK+GNFR
Sbjct: 371 KEFSKMNFEQIFQYYEQQSAIRKTRSPAEKKAAKAEKDELEAPFMYCKWDGRKEKVGNFR 430
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPP LFRGRGEHPK G+LK+RV E I IN K +K+P PP GHKWK V HDN+ TWLA
Sbjct: 431 VEPPSLFRGRGEHPKTGRLKKRVYPEQITINIGKGAKIPEPPKGHKWKTVVHDNKATWLA 490
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D +K+E AR+L K I+KIR +Y D KS+ M RQ
Sbjct: 491 MWQENINGAYKYVMLGAASAIKGQSDMKKFEKARELKKHIDKIRRDYTKDLKSEVMADRQ 550
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EHI L E P V FDFLGKDS
Sbjct: 551 RATAVYLIDKFALRAGNEKDAENEAETVGCCSLKYEHITLRE-----PNTVIFDFLGKDS 605
Query: 295 IRYYNEVPVEKRVFKNLQLFVENKK-GSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IR+Y+EV VEK+VFKNL+LF + K DD+FDRL T+ LN HL M GLTAKVFRTYN
Sbjct: 606 IRFYDEVTVEKQVFKNLKLFKKPPKTDGDDIFDRLTTTQLNNHLKNYMPGLTAKVFRTYN 665
Query: 354 ASITLQQQLNELMD-PDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKIS 412
AS T+ L +L+D + + AEK+ YN NR VA+LCNH+R+V +H+ M L ++I
Sbjct: 666 ASFTMSTLLQKLVDHKNLTIAEKVKLYNDCNREVAILCNHKRTVGAAHEAQMEKLGDRIK 725
Query: 413 NKRKQ 417
R Q
Sbjct: 726 GLRYQ 730
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 79/107 (73%), Gaps = 1/107 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D +K+E AR+L K I+KIR +Y D KS+
Sbjct: 486 ATWLAMWQENINGAYKYVMLGAASAIKGQSDMKKFEKARELKKHIDKIRRDYTKDLKSEV 545
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHE 589
M RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EHI L E
Sbjct: 546 MADRQRATAVYLIDKFALRAGNEKDAENEAETVGCCSLKYEHITLRE 592
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 447 RLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ +++ LE+Q D++ NK +AL TSK+NY+DPR++V +
Sbjct: 845 KFDDRVKTLELQAADRDGNKEVALSTSKINYIDPRLTVVF 884
>gi|5326994|emb|CAB46363.1| DNA topoisomerase I [Daucus carota]
Length = 909
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 236/506 (46%), Positives = 306/506 (60%), Gaps = 38/506 (7%)
Query: 10 LSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAY 69
L+ + EE+ I EY TK F N M DW+ + +I +L CDF ++ +
Sbjct: 381 LTLNQEEVHMIAVMQILTEYLTKPVFRENVMNDWKIILGRNH--IIKNLDDCDFTPIYEW 438
Query: 70 FVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHP 129
F K E++K MS EEKK +K+E ++Y +DG KE +GNFR+EPPGLFRGR P
Sbjct: 439 FRLKKEKKKQMSAEEKKAVKEEKLKQEEKYMWAVVDGVKENVGNFRVEPPGLFRGRESIP 498
Query: 130 KMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENVQG-QVKY 187
KMGKLK+R+ DI IN KD+ +P P PG WKEVRHDN VTWLA W + + G + KY
Sbjct: 499 KMGKLKKRISPSDITINIGKDAPIPECPIPGESWKEVRHDNTVTWLAYWNDPINGKEFKY 558
Query: 188 IMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ------------ 235
+ L SS LKG+ D +KYE ARKL I IR Y D+ SK++ RQ
Sbjct: 559 VFLAASSSLKGQSDKEKYEKARKLKGYIEGIRTAYTKDFSSKDVTKRQIAVATYLIDKLA 618
Query: 236 ----RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++ ++ DFL
Sbjct: 619 LRAGNAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPRNNP-----LLKLDFLP 673
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRT 351
KDSIRY V VE VFK +Q F KKGSD+LFD+L+T LN HL ELM GL+AKVFRT
Sbjct: 674 KDSIRYQKRVEVEIPVFKAIQQFRSGKKGSDNLFDKLDTCKLNAHLKELMPGLSAKVFRT 733
Query: 352 YNASITLQQQLN-ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
YNASITL + LN E D S +K+ Y AN+ VA++CNHQRSV KSH M L EK
Sbjct: 734 YNASITLDEMLNKETKGGDVS--QKVAVYQHANKEVAIICNHQRSVSKSHSTQMMRLDEK 791
Query: 411 ISNKRKQVKDAERALKDAKKAGESKAMTDKK----------KTALGRLKEQLLKLEVQET 460
I+ + +++ + L AKK +D K + + + ++ K+E +
Sbjct: 792 INKLKNFIEELKTDLSRAKKGKPPLKGSDGKTKRNMNPEAIEKKIAQTNVKIEKMERDKE 851
Query: 461 DKEENKTIALGTSKLNYLDPRISVTW 486
KE+ KT+ALGTSK+NYLDPRI+V W
Sbjct: 852 TKEDLKTVALGTSKINYLDPRITVAW 877
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 77/121 (63%), Gaps = 17/121 (14%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + G + KY+ L SS LKG+ D +KYE ARKL I IR Y D+ S
Sbjct: 540 TVTWLAYWNDPINGKEFKYVFLAASSSLKGQSDKEKYEKARKLKGYIEGIRTAYTKDFSS 599
Query: 542 KEMRIRQRAVALYFIDKL----------------ALRAGNEKDEDQADTVGCCSLRVEHI 585
K++ RQ AVA Y IDKL ALRAGNEKD+D+ADTVGCC+L+VE++
Sbjct: 600 KDVTKRQIAVATYLIDKLALRAGNAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV 659
Query: 586 Q 586
+
Sbjct: 660 E 660
>gi|449298971|gb|EMC94985.1| hypothetical protein BAUCODRAFT_34984 [Baudoinia compniacensis UAMH
10762]
Length = 903
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 213/425 (50%), Positives = 280/425 (65%), Gaps = 18/425 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSMTEKERAV--------I 55
G + + DAEEIA + M+ + + F NF D+++ + + + A I
Sbjct: 297 GVPVTMHPDAEEIAYGFGSMLNSTHNVENPTFQKNFFGDFKEMLDKTKHAKDKDGNSVKI 356
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
T KCDF+ + Y + + +KA+ EKKK+K E + Y C DG K+K+GNFR
Sbjct: 357 TKFEKCDFKPIFDYVDAERQAKKALPAAEKKKLKAEKDEKEAPYMYCMWDGRKQKVGNFR 416
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRGEHPK GK K+RVQ E I IN K++ VP PP GHKWKEV+HD + TWL
Sbjct: 417 VEPPGLFRGRGEHPKTGKWKKRVQPEQITINIGKEAMVPKPPEGHKWKEVKHDQEGTWLV 476
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I +IR++Y + K +EM +RQ
Sbjct: 477 MWQENINGAYKYVMLAANSDIKGQSDYKKFEKARELKKHIGRIRDDYTKELKDEEMVVRQ 536
Query: 236 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSI 295
RA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLGKDSI
Sbjct: 537 RATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTLRP-----PDTVIFDFLGKDSI 591
Query: 296 RYYNEVPVEKRVFKNLQLFVENKK-GSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
R+Y+EV V+ +VFKNL++F K DD+FDRL TS LNKHLS+ M GLTAKVFRTYNA
Sbjct: 592 RFYDEVKVDPQVFKNLKIFKRAPKTDGDDIFDRLTTSGLNKHLSKYMPGLTAKVFRTYNA 651
Query: 355 SITLQQQLNELMDPD--FSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKIS 412
S T+ L + M PD S AE++ YN ANR VA+LCNH+R+V SH +M L +K++
Sbjct: 652 SWTMATLLQK-MKPDKAMSIAERVKEYNDANRKVAILCNHKRTVAASHAATMEKLGDKVN 710
Query: 413 NKRKQ 417
R Q
Sbjct: 711 GLRYQ 715
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 78/103 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWL W EN+ G KY+ML +S +KG+ D++K+E AR+L K I +IR++Y + K +EM
Sbjct: 473 TWLVMWQENINGAYKYVMLAANSDIKGQSDYKKFEKARELKKHIGRIRDDYTKELKDEEM 532
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 533 VVRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTL 575
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 436 AMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
A +K + A+ +L+ ++ +V+ D+E NK +ALGTSK+NY+DPR++V +
Sbjct: 820 ASVEKLEAAVEKLEGRIANEKVKGEDRENNKEVALGTSKINYIDPRLTVVF 870
>gi|342890160|gb|EGU89024.1| hypothetical protein FOXB_00436 [Fusarium oxysporum Fo5176]
Length = 921
Score = 407 bits (1046), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/430 (49%), Positives = 287/430 (66%), Gaps = 22/430 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMI---EHEYTTKEAFNTNFMKDWRK-------SMTEKERAV 54
G+ + L+ + EE+ATF+ M+ + F NF +D+++ + + ++
Sbjct: 308 GQPVTLAPEVEEVATFWVAMMTPASSHHLENPVFRKNFFEDFKEYCDKYGVTDAQGKKVA 367
Query: 55 ITDLSKCDFRKMHAYFVQKSEERKA--MSKEEKKKIKDENEAITKEYGVCTIDGHKEKIG 112
+ L KC+F K++AY+ +K E+ K+ M+KEE++ K + +A+ + C DG K+K+G
Sbjct: 368 VKSLEKCNFDKIYAYWSEKVEQNKSKNMTKEEREAAKAKKDALEAPFTHCLWDGRKQKVG 427
Query: 113 NFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVT 172
NFR+EPP LFRGRGEHPK GK+K+RVQ E I IN K +KVP PP GHKWK V+HD + T
Sbjct: 428 NFRVEPPSLFRGRGEHPKTGKVKQRVQPEQITINIGKGAKVPEPPKGHKWKAVQHDQKAT 487
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA W EN+ KY+ML S +KG+ D++K+E AR+L K I+KIR++Y + KS+ M
Sbjct: 488 WLAMWQENINQNYKYVMLGADSDIKGQSDFKKFEKARELKKHIDKIRKDYTKELKSEVMA 547
Query: 233 IRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+Y IDK+ALRAGNEKD E++ADTVGCCSL+ EHI L P V FDFLG
Sbjct: 548 DRQRATAMYLIDKMALRAGNEKDTENEADTVGCCSLKYEHITLEP-----PNKVTFDFLG 602
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVENKKGS-DDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSI Y VE +VFKNL+LF + K + DDLFDRLNTS LNKHL+ M+GLTAKVFR
Sbjct: 603 KDSIPYRETAIVEPQVFKNLKLFKKAPKTTGDDLFDRLNTSQLNKHLTGYMKGLTAKVFR 662
Query: 351 TYNASITLQQQLNELM-DPDF--SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNL 407
TYNAS T+ + L +L DP + AEK+ YN NR VAVLCNH+R+V H++ M L
Sbjct: 663 TYNASWTMSELLRKLASDPRSRGTVAEKVKLYNDCNREVAVLCNHKRTVGAGHEQQMAKL 722
Query: 408 KEKISNKRKQ 417
++I R Q
Sbjct: 723 GDRIKGLRYQ 732
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 115/200 (57%), Gaps = 22/200 (11%)
Query: 410 KISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKL-----------EVQ 458
K N K+ ++A +A KDA +A + + D +K +G + + L +V+
Sbjct: 391 KSKNMTKEEREAAKAKKDALEAPFTHCLWDGRKQKVGNFRVEPPSLFRGRGEHPKTGKVK 450
Query: 459 ETDKEENKTIALGTSKLNYLDPR----------ISVTWLASWTENVQGQVKYIMLNPSSK 508
+ + E TI +G P+ TWLA W EN+ KY+ML S
Sbjct: 451 QRVQPEQITINIGKGAKVPEPPKGHKWKAVQHDQKATWLAMWQENINQNYKYVMLGADSD 510
Query: 509 LKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKD 568
+KG+ D++K+E AR+L K I+KIR++Y + KS+ M RQRA A+Y IDK+ALRAGNEKD
Sbjct: 511 IKGQSDFKKFEKARELKKHIDKIRKDYTKELKSEVMADRQRATAMYLIDKMALRAGNEKD 570
Query: 569 -EDQADTVGCCSLRVEHIQL 587
E++ADTVGCCSL+ EHI L
Sbjct: 571 TENEADTVGCCSLKYEHITL 590
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 432 GESKAMT-DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
E + +T DK A+ + E++ LE+Q D++ NK +ALGTSK+NY+DPR++V +
Sbjct: 831 AEGRGVTVDKLLKAVDKFDERIKTLELQAQDRDGNKEVALGTSKINYIDPRLTVVF 886
>gi|429858314|gb|ELA33139.1| topoisomerase i [Colletotrichum gloeosporioides Nara gc5]
Length = 879
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/425 (50%), Positives = 275/425 (64%), Gaps = 17/425 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSMTEKERAV--------- 54
GK + L +AEE+A ++ M+ ++ + F NF +D+++ + E +
Sbjct: 272 GKPVNLPIEAEEVAWYFGSMLSSKHNVENPVFQKNFFEDFKQVLKESGKPATDKQGNKVD 331
Query: 55 ITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNF 114
I D SK DF M Y Q+S RK + EKK K E + + + + C DG KEK+GNF
Sbjct: 332 IKDFSKMDFNAMFQYSEQQSAARKNRTAAEKKAAKAEKDELEEPFMYCKWDGRKEKVGNF 391
Query: 115 RIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWL 174
R+EPP LFRGRGEHPK GK KRRV E + IN KD+KVP P GHKWK V HDN+ TWL
Sbjct: 392 RVEPPSLFRGRGEHPKTGKFKRRVYPEQVTINIGKDAKVPEAPKGHKWKAVVHDNKATWL 451
Query: 175 ASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIR 234
A W EN+ G KY+ML +S +KG+ D +K+E AR+L K I++IR +Y D KS+ M R
Sbjct: 452 AMWQENINGAYKYVMLGAASAIKGQSDMKKFEKARELKKHIDRIRRDYTRDLKSEVMADR 511
Query: 235 QRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKD 293
QRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EHI L E P V FDFLGKD
Sbjct: 512 QRATAVYLIDKFALRAGNEKDSENEAETVGCCSLKYEHITLRE-----PNTVIFDFLGKD 566
Query: 294 SIRYYNEVPVEKRVFKNLQLFVENKKG-SDDLFDRLNTSVLNKHLSELMEGLTAKVFRTY 352
SIR+Y+EV VEK+VFKNL+LF + K DD+FDRL T+ LN HL M GLTAKVFRTY
Sbjct: 567 SIRFYDEVTVEKQVFKNLKLFKKAPKADGDDIFDRLTTTQLNNHLKNYMPGLTAKVFRTY 626
Query: 353 NASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKIS 412
NAS T+ L +L + + EK+ YN NR VA+LCNH+R+V +H+ M L ++I
Sbjct: 627 NASFTMSTLLKKLKVENLTIPEKVKLYNDCNREVAILCNHKRTVGAAHEAQMEKLGDRIK 686
Query: 413 NKRKQ 417
R Q
Sbjct: 687 GLRYQ 691
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/107 (57%), Positives = 79/107 (73%), Gaps = 1/107 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D +K+E AR+L K I++IR +Y D KS+
Sbjct: 448 ATWLAMWQENINGAYKYVMLGAASAIKGQSDMKKFEKARELKKHIDRIRRDYTRDLKSEV 507
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHE 589
M RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EHI L E
Sbjct: 508 MADRQRATAVYLIDKFALRAGNEKDSENEAETVGCCSLKYEHITLRE 554
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 31/40 (77%)
Query: 447 RLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
++ E++ LE+Q D++ NK +AL TSK+NY+DPR++V +
Sbjct: 806 KIDERIKALELQAADRDGNKEVALSTSKINYIDPRLTVVF 845
>gi|154336693|ref|XP_001564582.1| DNA topoisomerase IB, large subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061617|emb|CAM38648.1| DNA topoisomerase IB, large subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 637
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/427 (49%), Positives = 285/427 (66%), Gaps = 7/427 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+E K++ + EE+AT +A M EH+Y EAF NF + WR+ + +K + I L CDF
Sbjct: 71 GREFKMTPEEEEVATMFAVMKEHDYYRMEAFRRNFFESWRE-ILDKRQHPIRRLELCDFE 129
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ +++ + E++ +KEEKK IK++ + + Y C DG +E++ NFR+EPPGLFRG
Sbjct: 130 PIYQWYLAEREKKLNRTKEEKKSIKEKQDMDAEPYRYCMWDGRREQVANFRVEPPGLFRG 189
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HP MGKLK RVQ E I IN + ++VP PP GHKW V+HD+ VTWLA W ++V G
Sbjct: 190 RGKHPLMGKLKARVQPEGITINIGETAEVPVPPAGHKWGAVQHDHTVTWLAMWRDSVVGN 249
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+ML SS +KG+ D K+E ARKL ++ IR +Y D+KS ++ + QRAVA+YFID
Sbjct: 250 AKYVMLAASSSVKGQSDMMKFEKARKLKDKVDDIRASYMEDFKSNDVHVAQRAVAMYFID 309
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
+LALR GNEK ED+ADTVGCCSLRVEHIQL + +V FDFLGKDSIRY N+V V
Sbjct: 310 RLALRVGNEKGEDEADTVGCCSLRVEHIQLMSDN-----IVRFDFLGKDSIRYQNDVAVL 364
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
V+ LQ F K D+FD+LN + LN HL M GL+AKVFRTYNASITL + E
Sbjct: 365 PEVYALLQRFTRRKSPGTDIFDQLNPTQLNDHLKSFMNGLSAKVFRTYNASITLDRWFKE 424
Query: 365 -LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
+D +S A+K+ +N+AN VA+LCNHQ+++ K+ M L K RK ++ E+
Sbjct: 425 KPVDSKWSIADKLAYFNKANTEVAILCNHQKAISKNFKLQMMQLTTKSEYTRKMIELLEK 484
Query: 424 ALKDAKK 430
A AKK
Sbjct: 485 AEVTAKK 491
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 81/105 (77%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W ++V G KY+ML SS +KG+ D K+E ARKL ++ IR +Y D+KS
Sbjct: 235 TVTWLAMWRDSVVGNAKYVMLAASSSVKGQSDMMKFEKARKLKDKVDDIRASYMEDFKSN 294
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
++ + QRAVA+YFID+LALR GNEK ED+ADTVGCCSLRVEHIQL
Sbjct: 295 DVHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQL 339
>gi|378733270|gb|EHY59729.1| DNA topoisomerase I [Exophiala dermatitidis NIH/UT8656]
Length = 902
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/430 (48%), Positives = 282/430 (65%), Gaps = 21/430 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSMTEKERAV----- 54
M+ G + L DAEE+A F+ M+ + + F NF D+++ + + A
Sbjct: 294 MKYDGVPISLHPDAEEVAGFFGSMLNSTHNVENPTFQKNFFNDFKEILEKTGGATDAKTG 353
Query: 55 ----ITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEK 110
I + +KCDFR + ++ + +KA+ EKK +K + Y C DG K+K
Sbjct: 354 KKIEIKEFAKCDFRPIFEHYEAERAAKKALPAAEKKALKAAKDEAEAPYMYCIWDGKKQK 413
Query: 111 IGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQ 170
+GNFR+EPPGLFRGRGEHPK GK+K RV E + +N K++KVPPPP GHKWKE++HD Q
Sbjct: 414 VGNFRVEPPGLFRGRGEHPKTGKVKTRVMPEQVTLNIGKEAKVPPPPEGHKWKEIKHDKQ 473
Query: 171 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 230
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ D KS+
Sbjct: 474 GTWLAMWQENINGNYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRQDYRKDLKSEL 533
Query: 231 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFL 290
M RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EHI L P V FDFL
Sbjct: 534 MADRQKATAMYLIDQFALRAGNEKGEDEADTVGCCSLKYEHITLR-----APNTVIFDFL 588
Query: 291 GKDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
GKDSIR++ E V+ +VFKNL++F + KK DD+FDRL T+ LN HL M GLTAKVF
Sbjct: 589 GKDSIRFHEEFEVDPQVFKNLKIFKKPPKKEGDDIFDRLTTTQLNNHLKNYMPGLTAKVF 648
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS T+ + L+E M + S AEK+ +N ANR VA+LCNH+R+V +H M E
Sbjct: 649 RTYNASYTMSKLLSE-MRSEGSVAEKVKDFNDANRKVAILCNHKRTVAATHTNQM----E 703
Query: 410 KISNKRKQVK 419
KI N+ K +K
Sbjct: 704 KIGNRLKGLK 713
>gi|189094083|gb|ACD75869.1| topoisomerase I [Metrius contractus]
Length = 281
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/264 (75%), Positives = 226/264 (85%), Gaps = 5/264 (1%)
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RIRQRAVALYFID+LALRAGNEKDEDQADTVGCCSLRVEHI LHE+KDGK YV FDFLG
Sbjct: 1 RIRQRAVALYFIDRLALRAGNEKDEDQADTVGCCSLRVEHISLHEQKDGKEYVTVFDFLG 60
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRT 351
KDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELM+GLTAKVFRT
Sbjct: 61 KDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMDGLTAKVFRT 120
Query: 352 YNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
YNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKEKI
Sbjct: 121 YNASWTLQQQLDELTNADDTLAEKILSYNRANRAVAILCNHQRSVPKGHQKSMEKLKEKI 180
Query: 412 SNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENK 466
K++ + D +R +KDA+K + + K + DKKK AL RL++QL+KLEVQETD++ENK
Sbjct: 181 DQKKENITDMQRQVKDAQKDAKHGSVKEKVVYDKKKKALERLRDQLMKLEVQETDRDENK 240
Query: 467 TIALGTSKLNYLDPRISVTWLASW 490
+IALGTSKLNYLDPRISV W +
Sbjct: 241 SIALGTSKLNYLDPRISVAWCKKY 264
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/50 (92%), Positives = 48/50 (96%)
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
RIRQRAVALYFID+LALRAGNEKDEDQADTVGCCSLRVEHI LHE+KD K
Sbjct: 1 RIRQRAVALYFIDRLALRAGNEKDEDQADTVGCCSLRVEHISLHEQKDGK 50
>gi|346324469|gb|EGX94066.1| topoisomerase I [Cordyceps militaris CM01]
Length = 900
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 215/431 (49%), Positives = 281/431 (65%), Gaps = 23/431 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMI---EHEYTTKEAFNTNFMKDWRKSM--------TEKERA 53
G+++ L +AEE A+F+ M+ + F NF +D+ + + + ++
Sbjct: 286 GQDVTLPLEAEEAASFWVAMMTPASSHHLENPTFRQNFFEDFAEIVKKAGGAKNSAGDKV 345
Query: 54 VITDLSKCDFRKMHAYFVQKSEERKA--MSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I L KCDF M+ +++ K+E +K +SK EK K E + + Y C DG K+K+
Sbjct: 346 PIKSLEKCDFGNMYDHWLAKTEAKKNKNLSKAEKDAAKAEKDKLEAPYITCLWDGRKQKV 405
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RV E I IN K++KVP PP GHKWK V+HD +
Sbjct: 406 GNFRVEPPSLFRGRGEHPKTGRVKSRVWPEQITINIGKEAKVPEPPKGHKWKAVQHDQKA 465
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I+KIR +Y + KS+ M
Sbjct: 466 TWLAMWQENINGAYKYVMLGAASDVKGQSDFKKFEKARELKKHIDKIRRDYNKELKSEIM 525
Query: 232 RIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFL 290
RQRA A+Y IDKLALRAGNEKD E++ADTVGCCSL+ EHI L P V FDFL
Sbjct: 526 ADRQRATAMYLIDKLALRAGNEKDTENEADTVGCCSLKFEHISLEP-----PNNVTFDFL 580
Query: 291 GKDSIRYYNEVPVEKRVFKNLQLFVENKKG-SDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
GKDSIRY V+ +VFKNL+LF + K DDLFDRL TS LNKHL+ M+GLTAKVF
Sbjct: 581 GKDSIRYNETAKVDAQVFKNLKLFKKAPKSDGDDLFDRLTTSQLNKHLNSYMQGLTAKVF 640
Query: 350 RTYNASITLQQQLNEL-MDP--DFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGN 406
RTYNAS T+ + L EL DP S AEK+ YN NR VA+LCNH+RSV SH++ M
Sbjct: 641 RTYNASFTMSRLLRELENDPRSKGSVAEKVKLYNDCNRQVAILCNHKRSVGASHEQQMQK 700
Query: 407 LKEKISNKRKQ 417
+ ++I R Q
Sbjct: 701 MGDRIKGLRYQ 711
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I+KIR +Y + KS+
Sbjct: 465 ATWLAMWQENINGAYKYVMLGAASDVKGQSDFKKFEKARELKKHIDKIRRDYNKELKSEI 524
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQL 587
M RQRA A+Y IDKLALRAGNEKD E++ADTVGCCSL+ EHI L
Sbjct: 525 MADRQRATAMYLIDKLALRAGNEKDTENEADTVGCCSLKFEHISL 569
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 35/44 (79%)
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
TA+ +L +++ LE+Q D++ NK +ALGTSK+NY+DPR++V +
Sbjct: 822 TAVEKLDDRVKVLELQAEDRDGNKEVALGTSKINYIDPRLTVVF 865
>gi|400602504|gb|EJP70106.1| topoisomerase I [Beauveria bassiana ARSEF 2860]
Length = 901
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 217/431 (50%), Positives = 281/431 (65%), Gaps = 23/431 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMI---EHEYTTKEAFNTNFMKDWRKSMTEK--------ERA 53
G+++ L +AEE+ATF+ M+ + F NF D+ + + + E+
Sbjct: 287 GQDVTLPLEAEEVATFWVAMMTPASSHHLENPTFRQNFFHDFSEIIKKAGGAKNAAGEKV 346
Query: 54 VITDLSKCDFRKMHAYFVQKSEERKA--MSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I L KCDF KM+ +++ K+E +K +SK EK+ K E + + + C DG K+K+
Sbjct: 347 AIKSLDKCDFGKMYDHWLAKTEAKKNKNLSKVEKEAAKAEKDELEAPFTHCLWDGRKQKV 406
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RV E I IN K +KVP PP GHKWK V+HD +
Sbjct: 407 GNFRVEPPSLFRGRGEHPKTGRVKTRVWPEQITINIGKKAKVPEPPKGHKWKAVQHDQKA 466
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I+KIR Y + KS+ M
Sbjct: 467 TWLAMWQENINGAYKYVMLGAASDVKGQSDFKKFEKARELKKHIDKIRREYTKELKSEVM 526
Query: 232 RIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFL 290
RQRA A+Y IDKLALRAGNEKD E++ADTVGCCSL+ EHI L P V FDFL
Sbjct: 527 ADRQRATAMYLIDKLALRAGNEKDTENEADTVGCCSLKYEHITLEP-----PNNVTFDFL 581
Query: 291 GKDSIRYYNEVPVEKRVFKNLQLFVENKKG-SDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
GKDSIRY V+ +VFKNL+LF + K DDLFDRL TS LNKHL+ M+GLTAKVF
Sbjct: 582 GKDSIRYNETAKVDAQVFKNLKLFKKPPKSDGDDLFDRLTTSQLNKHLNSYMQGLTAKVF 641
Query: 350 RTYNASITLQQQLNEL-MDPDF--SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGN 406
RTYNAS T+ + L +L DP S AEK+ YN NR VA+LCNH+RSV SH++ M
Sbjct: 642 RTYNASFTMSRLLRDLEKDPRSRGSIAEKVKLYNDCNREVAILCNHKRSVGASHEQQMQK 701
Query: 407 LKEKISNKRKQ 417
L ++I R Q
Sbjct: 702 LGDRIKGLRYQ 712
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 63/105 (60%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I+KIR Y + KS+
Sbjct: 466 ATWLAMWQENINGAYKYVMLGAASDVKGQSDFKKFEKARELKKHIDKIRREYTKELKSEV 525
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQL 587
M RQRA A+Y IDKLALRAGNEKD E++ADTVGCCSL+ EHI L
Sbjct: 526 MADRQRATAMYLIDKLALRAGNEKDTENEADTVGCCSLKYEHITL 570
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 455 LEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
LE Q D++ NK +ALGTSK+NY+DPR++V +
Sbjct: 835 LETQAEDRDGNKEVALGTSKINYIDPRLTVVF 866
>gi|395145808|gb|AFN53344.1| DNA topoisomerase 1, partial [Crematogaster cf. chlorotica
BBB-2012]
Length = 259
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/245 (79%), Positives = 223/245 (91%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GKEMKLS++ EE+ATFYARM++H+YTTK AFN NF DWR+ MTE ERA I DLSKC+F+
Sbjct: 15 GKEMKLSEETEEVATFYARMLDHDYTTKPAFNNNFFHDWREVMTESERAKINDLSKCNFK 74
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MHAYF+QKSEERKAM+KEEK+KIK++NE I KEYG CTIDGHKEKIGNF+IEPPGLFRG
Sbjct: 75 EMHAYFMQKSEERKAMTKEEKQKIKEKNEEIQKEYGFCTIDGHKEKIGNFKIEPPGLFRG 134
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPK+GK+K+RV ED++INCSKDS +P PP GHKWKE+RHD VTWLASWTEN+QGQ
Sbjct: 135 RGEHPKIGKMKKRVLPEDVLINCSKDSNIPKPPTGHKWKEIRHDPNVTWLASWTENIQGQ 194
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 195 MKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYREDWKSKEMRIRQRAVALYFID 254
Query: 245 KLALR 249
KLALR
Sbjct: 255 KLALR 259
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/84 (85%), Positives = 79/84 (94%), Gaps = 2/84 (2%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +VTWLASWTEN+QGQ+KY+MLNPSSKLKGEKDWQKYETARKLA+SI+KIR Y+ D
Sbjct: 178 DP--NVTWLASWTENIQGQMKYVMLNPSSKLKGEKDWQKYETARKLAQSIDKIRAEYRED 235
Query: 539 WKSKEMRIRQRAVALYFIDKLALR 562
WKSKEMRIRQRAVALYFIDKLALR
Sbjct: 236 WKSKEMRIRQRAVALYFIDKLALR 259
>gi|452841954|gb|EME43890.1| hypothetical protein DOTSEDRAFT_71635 [Dothistroma septosporum
NZE10]
Length = 902
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/427 (49%), Positives = 285/427 (66%), Gaps = 20/427 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSMTEKERAV--------I 55
G + + +AEEIA + M+ + + F NFM D+++ M E A I
Sbjct: 295 GVPVSMHSEAEEIAHAFGAMLNSAHNVENPTFQKNFMADFKEKMAETGNAKDPQGKQVKI 354
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
T KCDF+ + + + + +KA+ EKKK+K E + + Y C DG K+K+GNFR
Sbjct: 355 TTFEKCDFKPIFNHVDAERQAKKALPAAEKKKLKAEKDELEAPYLYCVWDGRKQKVGNFR 414
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRGEHPK GK K+RV E I IN K++ VP PP GHKWKE++HDN TWLA
Sbjct: 415 VEPPGLFRGRGEHPKTGKWKKRVTPEQITINIGKEATVPKPPEGHKWKEIKHDNTATWLA 474
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y + KS+ M RQ
Sbjct: 475 MWQENINGAYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRKDYTKELKSEIMAERQ 534
Query: 236 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSI 295
RA A+Y ID+ ALRAGNEK +D+ADTVGCCSL+ E++ L P + FDFLGKDSI
Sbjct: 535 RATAVYLIDQFALRAGNEKSDDEADTVGCCSLKYENVTLK-----PPNKIIFDFLGKDSI 589
Query: 296 RYYNEVPVEKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
R+Y+EV V +VFKNL++F + KK D++FDRL TS LNKHLS M+GLTAKVFRTYNA
Sbjct: 590 RFYDEVEVTDQVFKNLKIFKRSPKKDGDEIFDRLTTSGLNKHLSNYMQGLTAKVFRTYNA 649
Query: 355 SITLQQQLNELMDPDFSE----AEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
S T+ Q L + M PD S AE++ AYN ANR VA+LCNH+R+V SH + M +++K
Sbjct: 650 SYTMSQLLQQ-MTPDHSGKTAIAEQVKAYNDANRKVAILCNHKRTVAASHAQQMEKMEDK 708
Query: 411 ISNKRKQ 417
++ R Q
Sbjct: 709 MNALRYQ 715
>gi|367052525|ref|XP_003656641.1| hypothetical protein THITE_2121555 [Thielavia terrestris NRRL 8126]
gi|347003906|gb|AEO70305.1| hypothetical protein THITE_2121555 [Thielavia terrestris NRRL 8126]
Length = 842
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/418 (50%), Positives = 276/418 (66%), Gaps = 16/418 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSMTEKERAV--------I 55
G+ + L +AEE+ATF+ M+ + F NF D++ + + A I
Sbjct: 297 GQPVDLHVEAEEVATFFGSMLHSTQNVENPVFQKNFFNDFKDILNKTGGAKDMNGNPVDI 356
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
+ K DF K+ ++ S+ +KA EKK K E Y C DG KEK+GNFR
Sbjct: 357 KEFKKLDFTKIFEHYKALSDAKKARPAAEKKAEKAAKEKAEAPYMYCRWDGRKEKVGNFR 416
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRGEHPK G +K+RV E + IN KD+KVP PPPGHKWK V+HDN+ TWLA
Sbjct: 417 VEPPGLFRGRGEHPKTGMVKKRVMPEQVTINIGKDAKVPDPPPGHKWKAVQHDNKATWLA 476
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y + KS+ M RQ
Sbjct: 477 MWQENVNGNYKYVMLAANSTVKGQADFKKFEKARELKKHIDRIRADYTRELKSEVMADRQ 536
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E P V FDFLGKDS
Sbjct: 537 RATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLRE-----PNTVIFDFLGKDS 591
Query: 295 IRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IR+YNE V+++VFKNL++F + K+ DD+FDRL TS LNKHLS M GLTAKVFRTYN
Sbjct: 592 IRFYNEFVVDRQVFKNLKMFKKPPKEEGDDIFDRLTTSQLNKHLSSYMPGLTAKVFRTYN 651
Query: 354 ASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
AS T+ Q L +L + + AEKI YN NR VA+LCNH+R+V SH+ M L ++I
Sbjct: 652 ASWTMSQLLQKLKVENRTMAEKIKLYNDCNREVAILCNHKRTVGASHEAQMEKLGDRI 709
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 85/125 (68%), Gaps = 10/125 (8%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y + KS+
Sbjct: 472 ATWLAMWQENVNGNYKYVMLAANSTVKGQADFKKFEKARELKKHIDRIRADYTRELKSEV 531
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEE---------KDE 593
M RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E KD
Sbjct: 532 MADRQRATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLREPNTVIFDFLGKDS 591
Query: 594 KKIYN 598
+ YN
Sbjct: 592 IRFYN 596
>gi|116181974|ref|XP_001220836.1| hypothetical protein CHGG_01615 [Chaetomium globosum CBS 148.51]
gi|88185912|gb|EAQ93380.1| hypothetical protein CHGG_01615 [Chaetomium globosum CBS 148.51]
Length = 907
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/424 (50%), Positives = 277/424 (65%), Gaps = 16/424 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSMTEKERAV--------I 55
G+ + L +AEE+ATF+ M+ + F NF D++ + + A I
Sbjct: 300 GQPVDLHIEAEEVATFFGSMLHSTQNVENPVFQKNFFADFKDILKKTGGAKDKQGKPVDI 359
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
+ K DF K+ ++ + RKA EKK K E + + C DG KEK+GNFR
Sbjct: 360 KEFKKLDFTKIFDHYKALGDARKARPAAEKKAEKAEKDKAEGHFMFCKWDGRKEKVGNFR 419
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRGEHPK G +K+RV E + IN KD+KVP PPPGHKWK V+HDN+ TWLA
Sbjct: 420 VEPPGLFRGRGEHPKTGTVKKRVMPEQVTINIGKDAKVPAPPPGHKWKAVQHDNKATWLA 479
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W ENV G KY+ML +S +KG+ D++K+E AR L K I++IR +Y + KS+ M RQ
Sbjct: 480 MWQENVNGNYKYVMLAANSTVKGQADFKKFEKARDLKKHIDRIRADYTRELKSEVMADRQ 539
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y ID+ ALRAGNEKD E++A+TVGCCSL+ EH+ L E P V FDFLGKDS
Sbjct: 540 RATAMYLIDRFALRAGNEKDTENEAETVGCCSLKFEHVTLRE-----PNTVIFDFLGKDS 594
Query: 295 IRYYNEVPVEKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IR+YNE V+++VFKNL++F ++ K+ DD+FDRL TS LNKHLS M GLTAKVFRTYN
Sbjct: 595 IRFYNEFSVDRQVFKNLKVFKKSPKEDGDDIFDRLTTSQLNKHLSSYMTGLTAKVFRTYN 654
Query: 354 ASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN 413
AS T+ Q L +L D + AEKI YN NR VA+LCNH+R+V H+ M L ++I
Sbjct: 655 ASWTMSQLLQKLEVEDRTMAEKIKLYNDCNREVAILCNHKRTVGAGHEAQMEKLGDRIKG 714
Query: 414 KRKQ 417
+ Q
Sbjct: 715 LKYQ 718
>gi|88192407|pdb|2B9S|A Chain A, Crystal Structure Of Heterodimeric L. Donovani
Topoisomerase I-Vanadate-Dna Complex
Length = 432
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/392 (52%), Positives = 274/392 (69%), Gaps = 7/392 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+E K++ + EE+AT +A M EH+Y E F NF + WR+ + +K + I L CDF
Sbjct: 47 GREFKMTPEEEEVATMFAVMKEHDYYRMEVFRRNFFESWRE-ILDKRQHPIRRLELCDFE 105
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + + + E++ + +KEEKK IK++ +A + Y C DG +E++ NFR+EPPGLFRG
Sbjct: 106 PIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEPYRYCVWDGRREQVANFRVEPPGLFRG 165
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HP MGKLK RVQ EDI IN + ++VP PP GHKW V+HD+ VTWLA W ++V G
Sbjct: 166 RGKHPLMGKLKVRVQPEDITINIGETAEVPVPPAGHKWAAVQHDHTVTWLAMWRDSVAGN 225
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+ML PSS +KG+ D K+E ARKL ++ IR +Y D+KS ++ + QRAVA+YFID
Sbjct: 226 MKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEDFKSNDLHVAQRAVAMYFID 285
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
+LALR GNEK ED+ADTVGCCSLRVEHIQL + +V FDFLGKDSIRY N+V V
Sbjct: 286 RLALRVGNEKGEDEADTVGCCSLRVEHIQLMPDN-----IVRFDFLGKDSIRYQNDVAVL 340
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
V+ LQ F K D+FD+LN + LN HL M+GL+AKVFRTYNASITL + E
Sbjct: 341 PEVYALLQRFTRRKSPGMDIFDQLNPTQLNDHLKSFMDGLSAKVFRTYNASITLDRWFKE 400
Query: 365 -LMDPDFSEAEKILAYNRANRAVAVLCNHQRS 395
+DP +S A+K+ +N+AN VA+LCNHQ+S
Sbjct: 401 KPVDPKWSTADKLAYFNKANTEVAILCNHQKS 432
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/105 (61%), Positives = 83/105 (79%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W ++V G +KY+ML PSS +KG+ D K+E ARKL ++ IR +Y D+KS
Sbjct: 211 TVTWLAMWRDSVAGNMKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEDFKSN 270
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
++ + QRAVA+YFID+LALR GNEK ED+ADTVGCCSLRVEHIQL
Sbjct: 271 DLHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQL 315
>gi|189094073|gb|ACD75864.1| topoisomerase I [Amphizoa lecontei]
Length = 268
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 195/264 (73%), Positives = 227/264 (85%), Gaps = 5/264 (1%)
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K +VV FDFLG
Sbjct: 1 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDDKEFVVVFDFLG 60
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRT 351
KDSIRYYNEVPVEKRVFKNLQLF+ENK +DDLFDRLNT ++NKHL+ELM+GLTAKVFRT
Sbjct: 61 KDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTQIMNKHLNELMDGLTAKVFRT 120
Query: 352 YNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+NAS TLQQQL+EL + D + +EKIL+YNRANRAVA+LCNHQRSVPK H K+M LKEKI
Sbjct: 121 FNASYTLQQQLDELTNADDTLSEKILSYNRANRAVAILCNHQRSVPKGHQKTMEKLKEKI 180
Query: 412 SNKRKQVKDAERALKDAKKAGE-----SKAMTDKKKTALGRLKEQLLKLEVQETDKEENK 466
KR+Q+ + ++ +KDA++ + K + DKKK L RLK+QL+KLEVQETDK+ENK
Sbjct: 181 DQKREQITEMQKQVKDAQRDAQHGSVKEKVVLDKKKKGLERLKDQLVKLEVQETDKDENK 240
Query: 467 TIALGTSKLNYLDPRISVTWLASW 490
+IALGTSKLNYLDPRISV W +
Sbjct: 241 SIALGTSKLNYLDPRISVAWCKKY 264
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/52 (90%), Positives = 51/52 (98%)
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKI 596
RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD+K+
Sbjct: 1 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDDKEF 52
>gi|406866162|gb|EKD19202.1| eukaryotic DNA topoisomerase I [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 897
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 212/418 (50%), Positives = 275/418 (65%), Gaps = 16/418 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWRKSM--------TEKERAVI 55
G + LS +AEEIA F+ M+ + F NF +D+ + E+ I
Sbjct: 289 GVPVTLSVEAEEIAGFFGAMLNSTLNVENPTFQKNFFQDFTDEVKKTGGAKGPNGEKINI 348
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
+ SK DF+++ AY+ KS+ RKA S EKK K E + + Y C DG KE++GNFR
Sbjct: 349 KEFSKLDFKQIFAYYDGKSQARKARSAAEKKAEKAEKDEVEAPYTHCLWDGRKEQVGNFR 408
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+EPPGLFRGRG HPK GK+KRRV +IIN K++ VPPPP G+ WKEVRHDN+V+WL
Sbjct: 409 VEPPGLFRGRGAHPKTGKVKRRVYPNQVIINIGKEATVPPPPEGYNWKEVRHDNKVSWLV 468
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ L S +KG+ D++K+E AR+L K I+ IR+ Y D ++ M RQ
Sbjct: 469 MWQENINGAHKYVQLAAKSSVKGQSDFKKFEKARELKKHIDHIRKEYTRDLGAELMADRQ 528
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y ID+LALRAGNEKD E++A+TVGCCSL+ EHI L P +V FDFLGKDS
Sbjct: 529 RATAVYLIDRLALRAGNEKDAENEAETVGCCSLKYEHITLKP-----PNIVIFDFLGKDS 583
Query: 295 IRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IRYY+EV VE +VFKNL+LF + K+ DD+FDRL T+ LNKHL+ M GL+AKVFRTYN
Sbjct: 584 IRYYDEVAVEDKVFKNLKLFKKPPKQEGDDIFDRLTTTQLNKHLTSYMPGLSAKVFRTYN 643
Query: 354 ASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
AS T+ + L L + S EK+ YN NR VAVLCNH+RSV SH M + ++I
Sbjct: 644 ASWTMSKTLQALKVKNLSIQEKVKLYNDCNREVAVLCNHKRSVGASHQAQMEKMTDRI 701
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 89/136 (65%), Gaps = 3/136 (2%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
V+WL W EN+ G KY+ L S +KG+ D++K+E AR+L K I+ IR+ Y D ++
Sbjct: 464 VSWLVMWQENINGAHKYVQLAAKSSVKGQSDFKKFEKARELKKHIDHIRKEYTRDLGAEL 523
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDEKKIYNKTQR 602
M RQRA A+Y ID+LALRAGNEKD E++A+TVGCCSL+ EHI L + I++ +
Sbjct: 524 MADRQRATAVYLIDRLALRAGNEKDAENEAETVGCCSLKYEHITL--KPPNIVIFDFLGK 581
Query: 603 AKFRWAIDMATADFVF 618
R+ ++A D VF
Sbjct: 582 DSIRYYDEVAVEDKVF 597
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+K + A+ +L +++ + +Q D+E NK +ALGTSK+NY+DPR++V +
Sbjct: 813 VEKYEAAIKKLDDRITTMRLQAEDREGNKEVALGTSKINYIDPRLTVIF 861
>gi|409045205|gb|EKM54686.1| hypothetical protein PHACADRAFT_96904 [Phanerochaete carnosa
HHB-10118-sp]
Length = 865
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 234/547 (42%), Positives = 315/547 (57%), Gaps = 67/547 (12%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSM---TEKERAVITD 57
M+ GK + LS AEE+A FYA ++E E+ FN NF +D+ + + + ++ IT
Sbjct: 293 MKYNGKPVNLSSVAEEVAGFYAALLETEHAKDAIFNKNFFEDFLQVLKKDSPRDGTKITK 352
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
CDFR M+ +F ++KAMS EKK+ K + +A+ + C +DG KEK+GNFR+E
Sbjct: 353 FELCDFRPMYEHFELLKAQKKAMSSAEKKEAKSKKDALEAPFTHCVLDGRKEKVGNFRVE 412
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRGEHPK G+LK RV ED+ +N +P P WK V HD VTWLA+W
Sbjct: 413 PPGLFRGRGEHPKKGRLKLRVHPEDVTVNIGGGIPIPKPNVPGNWKAVVHDKTVTWLANW 472
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
ENV G KY+ L S LKG+ D QK+E +R+L K + +R+ Y K K M+ RQ A
Sbjct: 473 VENVNGNYKYVFLAAGSSLKGQSDMQKFEKSRELKKYVADVRKWYNEKLKEKVMKERQLA 532
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
LYFID LALRAGNEK ED+ADTVGCCSLR EHI L P + FDFLGKDSIRY
Sbjct: 533 TCLYFIDVLALRAGNEKGEDEADTVGCCSLRYEHITLEP-----PNFLIFDFLGKDSIRY 587
Query: 298 YNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
YN V V++RVFKN+++F + D LFDR++T+ +NK LS M+GLTAKVFRTYNASIT
Sbjct: 588 YNRVQVDERVFKNIKIFKDQTSEGDMLFDRVDTADVNKKLSSFMKGLTAKVFRTYNASIT 647
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAV---------------AVLCNHQRSVPKSHDK 402
QQQL++ + EK+ AYN ANR + V ++ P + D+
Sbjct: 648 FQQQLDQGTPEKGTVQEKLNAYNHANRMLRGFKYERMKLRHALFTVDSKFKKRKPYAEDE 707
Query: 403 S-------------------------MGNLKEKISNKRKQVKDAERALKDAKKAGESK-- 435
S EK++ + ++++ E ALKD K ES+
Sbjct: 708 SDLDDEAIAEHEEQWKARELEKAEKKFQKDNEKLAEQGEKLQ-PESALKDKIKEIESEFK 766
Query: 436 ----------------AMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
T+K + A+ +L E++ ++Q D+E K +ALGTSK+NYLD
Sbjct: 767 RLNKERGTGKHELKRDKPTEKIEEAIQKLDEKIKTFKLQMEDREAGKEVALGTSKINYLD 826
Query: 480 PRISVTW 486
PRI+ W
Sbjct: 827 PRITAAW 833
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 81/128 (63%), Gaps = 9/128 (7%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+W ENV G KY+ L S LKG+ D QK+E +R+L K + +R+ Y K K
Sbjct: 465 TVTWLANWVENVNGNYKYVFLAAGSSLKGQSDMQKFEKSRELKKYVADVRKWYNEKLKEK 524
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE---------KDE 593
M+ RQ A LYFID LALRAGNEK ED+ADTVGCCSLR EHI L KD
Sbjct: 525 VMKERQLATCLYFIDVLALRAGNEKGEDEADTVGCCSLRYEHITLEPPNFLIFDFLGKDS 584
Query: 594 KKIYNKTQ 601
+ YN+ Q
Sbjct: 585 IRYYNRVQ 592
>gi|2330649|emb|CAA74890.1| topoisomerase I [Pisum sativum]
Length = 892
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 228/494 (46%), Positives = 314/494 (63%), Gaps = 20/494 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ + L+ + YA M + +Y K+ F NF DWRK + VI +L CDF
Sbjct: 370 GRPVDLTPELRRGCYKYAVMRDTDYMQKDRFKENFWNDWRKLLGRNH--VIQNLKDCDFT 427
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + + E++K M+ EEKK +K+E ++Y +DG K ++GNFR+EPPGLFRG
Sbjct: 428 PIYDWCQSEKEKKKQMTTEEKKALKEEKLKQEEKYTWAIVDGVKRRVGNFRVEPPGLFRG 487
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMG+LK+R+ DI+IN +++VP P PG WK++R+DN VTWL W++ +
Sbjct: 488 RGEHPKMGRLKKRIHPSDIVINIGSEAQVPECPIPGEGWKDIRNDNTVTWLCYWSDPINP 547
Query: 184 QV-KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
++ KY+ L SS LKG+ D +KYE AR L I IR Y D+ SK++ +Q AVA Y
Sbjct: 548 KLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIGNIRAYYTKDFTSKDITKQQIAVATYL 607
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+VE++ P + F+FLGKDSI+Y N V
Sbjct: 608 IDKLALRAGNEKDDDEADTVGCCTLKVENVTRET-----PNKLKFNFLGKDSIKYENTVE 662
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+ + F ++K DDLFD+L+T+ LN HL ELM GLTAKVFRT+NASITL +L
Sbjct: 663 VELPVYNAILKFQKDKGPGDDLFDKLDTNKLNAHLKELMPGLTAKVFRTFNASITLDDKL 722
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
N+ D AEKI+ Y AN+ VA++CNHQRSV KSH M L EKI + +K+ +
Sbjct: 723 NKDTK-DGDAAEKIVVYQHANKQVAIICNHQRSVSKSHSAQMTKLNEKIDELQDVLKELK 781
Query: 423 RALKDAKKA-GESKAMTDKKKTALG------RLKEQLLKLEVQETD---KEENKTIALGT 472
L A+K +K+ K K +L ++ + K+E + D K + KT+ALGT
Sbjct: 782 VDLDRARKGKSPTKSSDGKSKRSLTPEVLEKKISQTNAKIEKMQRDMKTKVDLKTVALGT 841
Query: 473 SKLNYLDPRISVTW 486
SK+NYLDPRI+V W
Sbjct: 842 SKINYLDPRITVAW 855
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Query: 483 SVTWLASWTENVQGQV-KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWL W++ + ++ KY+ L SS LKG+ D +KYE AR L I IR Y D+ S
Sbjct: 534 TVTWLCYWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIGNIRAYYTKDFTS 593
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
K++ +Q AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE++
Sbjct: 594 KDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENV 637
>gi|325188249|emb|CCA22788.1| DNA topoisomerase putative [Albugo laibachii Nc14]
Length = 748
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 229/534 (42%), Positives = 318/534 (59%), Gaps = 59/534 (11%)
Query: 5 GKEMKLSQDAEEIATFYARMIEH-----EYTTKEAFNTNFMKDWRKSMTEKERAVITDLS 59
GK ++L+ EE+ +FYA + T++ FN NF +D +K + + DL
Sbjct: 190 GKSVELTPAQEEVVSFYAAIPPDGPQLGNPKTRKIFNQNFFQDLQKLLGKNHTIKKFDL- 248
Query: 60 KCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPP 119
CDF + + EE+K SKEEK+ K+ E G +DGH EK+GN+RIEPP
Sbjct: 249 -CDFSLIRQHLDVAREEKKNRSKEEKQLEKERKELEQFTNGFAIVDGHLEKVGNYRIEPP 307
Query: 120 GLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWT 178
GLFRGRGEHPK G LK RV E++ +N +VP PGH WKEV H + V+WLA W
Sbjct: 308 GLFRGRGEHPKTGTLKERVLPEEVTVNVGISDRVPICNMPGHAWKEVIHRDTVSWLAYWN 367
Query: 179 ENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
ENV G +KY+ L SS KG+ D KYE AR+L K I++IR++Y + K+K+ +QR+
Sbjct: 368 ENVMGGIKYVWLAASSSFKGKSDMIKYEKARQLKKHIDRIRKDYTSGLKAKDRSTQQRST 427
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A++ ID LALR GNEK ED+ADTVGCCSLRVEH+ +++ + FLGKDS+ Y
Sbjct: 428 AMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHMSFNDDN----CELTLAFLGKDSMPYN 483
Query: 299 NEVP------VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTY 352
N V V K+V+ NL+LF K +D +FD L TS LNKHLS LM GLTAKVFRT+
Sbjct: 484 NTVTLAQYGQVGKQVYSNLKLFCHKKSKNDQVFDELATSDLNKHLSSLMPGLTAKVFRTF 543
Query: 353 NASITLQQQLNELMDPD--FSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
NAS+TL+++L +DPD K++AYN ANR VA+LCNHQR+VPKS D ++ + +
Sbjct: 544 NASVTLEKELPYALDPDGKLETNVKVVAYNDANREVAILCNHQRTVPKSFDNTLEKMTAQ 603
Query: 411 ISNKRKQVKDAERALKDAKKAGESKAMTDKKKTA---------LGRLKEQLLK------- 454
+ ++Q++D ++ ++ ++G+S ++ K+ TA LK+ L K
Sbjct: 604 LDQLKEQLQDLKK-MQVLIQSGKSMSIQLKQSTANENGDEKEDQKDLKDLLAKKAQNHLF 662
Query: 455 ----------------------LEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L ++ DK +NK +ALGTSK+NY+DPRISV W
Sbjct: 663 PKTPSLEQVKKRTEAWKKKMNTLAIRLQDKSDNKQVALGTSKINYMDPRISVAW 716
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/113 (53%), Positives = 82/113 (72%)
Query: 481 RISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWK 540
R +V+WLA W ENV G +KY+ L SS KG+ D KYE AR+L K I++IR++Y + K
Sbjct: 357 RDTVSWLAYWNENVMGGIKYVWLAASSSFKGKSDMIKYEKARQLKKHIDRIRKDYTSGLK 416
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDE 593
+K+ +QR+ A++ ID LALR GNEK ED+ADTVGCCSLRVEH+ +++ E
Sbjct: 417 AKDRSTQQRSTAMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHMSFNDDNCE 469
>gi|380090637|emb|CCC11632.1| putative TOP1 protein [Sordaria macrospora k-hell]
Length = 919
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/424 (49%), Positives = 279/424 (65%), Gaps = 16/424 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWRKSMTEK--------ERAVI 55
G ++L +AEE ATF+ M+ + F NF +D+++ + ++ I
Sbjct: 312 GTPVELDIEAEEAATFFGFMLNSTVNVENPTFQKNFFRDFKEILDRTGGAKDKNGKKVDI 371
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
+ K DF ++ AY +++ + A S EKK K E + Y C DG KEK+GN R
Sbjct: 372 KEFEKLDFSQLWAYKDAQTKAKNARSSAEKKAEKAERDTRDAPYLYCKWDGRKEKVGNPR 431
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+E PGLFRGRG+HPK G +K+RV E I IN K++KVP PP GHKWK V+HDN+ TWLA
Sbjct: 432 VEIPGLFRGRGDHPKTGCIKKRVLPEQITINIGKEAKVPDPPAGHKWKAVQHDNKATWLA 491
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y D KS+ M RQ
Sbjct: 492 MWQENINGHYKYVMLAANSTVKGKADFKKFEKARELKKHIDRIRADYTKDLKSEVMADRQ 551
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E P V FDFLGKDS
Sbjct: 552 RATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLRE-----PNTVIFDFLGKDS 606
Query: 295 IRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IR+YNE V+++VFKNL++F + K+ DD+FDRL T+ LNKHLS M GLTAKVFRTYN
Sbjct: 607 IRFYNEFTVDRQVFKNLKMFKKPPKEDGDDIFDRLTTTQLNKHLSSYMPGLTAKVFRTYN 666
Query: 354 ASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN 413
AS T+ + L EL + + AEK+ YN NR VA+LCNH+R+V SH++ M L E+I
Sbjct: 667 ASYTMSKLLQELKVTNATVAEKVKLYNDCNRQVAILCNHKRTVGASHEQQMKKLVEQIKG 726
Query: 414 KRKQ 417
R Q
Sbjct: 727 LRYQ 730
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 85/125 (68%), Gaps = 10/125 (8%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y D KS+
Sbjct: 487 ATWLAMWQENINGHYKYVMLAANSTVKGKADFKKFEKARELKKHIDRIRADYTKDLKSEV 546
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEE---------KDE 593
M RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E KD
Sbjct: 547 MADRQRATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLREPNTVIFDFLGKDS 606
Query: 594 KKIYN 598
+ YN
Sbjct: 607 IRFYN 611
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 41/58 (70%)
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQ 495
+K + AL +L +++ LE+Q D+E NK +ALGTSK+NY+DPR++V + A + ++
Sbjct: 836 VEKLEAALVKLDQRIKNLELQSADREGNKEVALGTSKINYIDPRLTVVFSAKFNVPIE 893
>gi|336261184|ref|XP_003345383.1| TOP1 protein [Sordaria macrospora k-hell]
Length = 912
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/424 (49%), Positives = 279/424 (65%), Gaps = 16/424 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWRKSMTEK--------ERAVI 55
G ++L +AEE ATF+ M+ + F NF +D+++ + ++ I
Sbjct: 305 GTPVELDIEAEEAATFFGFMLNSTVNVENPTFQKNFFRDFKEILDRTGGAKDKNGKKVDI 364
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
+ K DF ++ AY +++ + A S EKK K E + Y C DG KEK+GN R
Sbjct: 365 KEFEKLDFSQLWAYKDAQTKAKNARSSAEKKAEKAERDTRDAPYLYCKWDGRKEKVGNPR 424
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+E PGLFRGRG+HPK G +K+RV E I IN K++KVP PP GHKWK V+HDN+ TWLA
Sbjct: 425 VEIPGLFRGRGDHPKTGCIKKRVLPEQITINIGKEAKVPDPPAGHKWKAVQHDNKATWLA 484
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y D KS+ M RQ
Sbjct: 485 MWQENINGHYKYVMLAANSTVKGKADFKKFEKARELKKHIDRIRADYTKDLKSEVMADRQ 544
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E P V FDFLGKDS
Sbjct: 545 RATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLRE-----PNTVIFDFLGKDS 599
Query: 295 IRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IR+YNE V+++VFKNL++F + K+ DD+FDRL T+ LNKHLS M GLTAKVFRTYN
Sbjct: 600 IRFYNEFTVDRQVFKNLKMFKKPPKEDGDDIFDRLTTTQLNKHLSSYMPGLTAKVFRTYN 659
Query: 354 ASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN 413
AS T+ + L EL + + AEK+ YN NR VA+LCNH+R+V SH++ M L E+I
Sbjct: 660 ASYTMSKLLQELKVTNATVAEKVKLYNDCNRQVAILCNHKRTVGASHEQQMKKLVEQIKG 719
Query: 414 KRKQ 417
R Q
Sbjct: 720 LRYQ 723
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y D KS+
Sbjct: 480 ATWLAMWQENINGHYKYVMLAANSTVKGKADFKKFEKARELKKHIDRIRADYTKDLKSEV 539
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHE 589
M RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E
Sbjct: 540 MADRQRATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLRE 586
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 41/58 (70%)
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQ 495
+K + AL +L +++ LE+Q D+E NK +ALGTSK+NY+DPR++V + A + ++
Sbjct: 829 VEKLEAALVKLDQRIKNLELQSADREGNKEVALGTSKINYIDPRLTVVFSAKFNVPIE 886
>gi|328353528|emb|CCA39926.1| DNA topoisomerase I [Komagataella pastoris CBS 7435]
Length = 625
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/409 (48%), Positives = 273/409 (66%), Gaps = 29/409 (7%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERA--VITDLSKCDF 63
K + L AEE+A F+ D++K + E A I KCDF
Sbjct: 51 KPVDLPIQAEEVACFF--------------------DFKKIVLEHGGANVEIESFDKCDF 90
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
K+ ++ + +K+++ +K++IK E + ++Y C ++G +E++GNFRIEPPGLFR
Sbjct: 91 SKIFDHYETQKSLKKSLTAAQKREIKSEKDKFEEKYKYCLLNGRRERVGNFRIEPPGLFR 150
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPK G++K+R+ ED+ +N S+D+ +PPPP GH+WKE++HDN V WLA+W ENV
Sbjct: 151 GRGSHPKTGRVKKRIYPEDVSLNLSEDAPIPPPPEGHQWKEIKHDNTVAWLATWRENVTN 210
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
VKY++ S LKG D++K+E AR+L K I++IR++Y+ ++ SK M RQ AVA Y I
Sbjct: 211 TVKYVLFAADSSLKGRSDFKKFEKARELKKYIHRIRKDYKKNFSSKVMLERQMAVATYLI 270
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIRYY EV V
Sbjct: 271 DVFALRAGGEKAEDEADTVGCCSLRYEHVTL-----KPPNTVVFDFLGKDSIRYYQEVNV 325
Query: 304 EKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
++VFKNL+LF ++ K+ DDLFDRL ++LNKHL + GL+AKVFRTYNAS T+Q QL
Sbjct: 326 HEKVFKNLRLFKKSPKQPGDDLFDRLTPNILNKHLQNYLPGLSAKVFRTYNASKTMQDQL 385
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+ L+ + S EK++ YN ANR VA+LCNHQR+ PKSHD + + + I
Sbjct: 386 D-LIPNEGSVGEKVVKYNAANREVAILCNHQRTKPKSHDMGVQRISDNI 433
>gi|322701021|gb|EFY92772.1| topoisomerase I [Metarhizium acridum CQMa 102]
Length = 909
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 220/431 (51%), Positives = 285/431 (66%), Gaps = 23/431 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMI---EHEYTTKEAFNTNFMKDWRK------SMTEKE--RA 53
GK + LS++AEE+ATF+ M+ + F NF D+ + T++E +
Sbjct: 295 GKPVTLSKEAEEVATFWVAMMTPASSHHLDNPVFRNNFFTDFSEIVKKNGGATDREGNKV 354
Query: 54 VITDLSKCDFRKMHAYFVQKSEERKA--MSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I L KCDF K++ Y++ K+E K +SKEEK+ K + +A+ Y C DG K+K+
Sbjct: 355 QIKSLDKCDFSKIYDYWLAKTEANKTKNLSKEEKEAAKAKKDALEAPYMYCLWDGRKQKV 414
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RV E I IN KD+K+P PP GHKWK V+HD +
Sbjct: 415 GNFRVEPPSLFRGRGEHPKTGRVKTRVFPEQITINIGKDAKIPEPPAGHKWKAVQHDQKA 474
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I+KIR++Y + KS+ M
Sbjct: 475 TWLAMWQENINGAYKYVMLGAASDVKGQSDYKKFEKARELKKYIDKIRKDYTRELKSEIM 534
Query: 232 RIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFL 290
RQRA A+Y ID+LALRAGNEKD E++ADTVGCCSL+ EHI L P V FDFL
Sbjct: 535 ADRQRATAMYLIDQLALRAGNEKDTENEADTVGCCSLKYEHITLEP-----PNKVTFDFL 589
Query: 291 GKDSIRYYNEVPVEKRVFKNLQLFVENKKG-SDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
GKDSIRY VE +VFKNL+LF + K DDLFDRL TS LNKHL+ M GLTAKVF
Sbjct: 590 GKDSIRYNETAFVEPQVFKNLKLFKKAPKSDGDDLFDRLTTSQLNKHLNSYMTGLTAKVF 649
Query: 350 RTYNASITLQQQLNEL-MDP--DFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGN 406
RTYNAS T+ L EL DP + AEK+ YN NR VA+LCNH+R+V SH++ M
Sbjct: 650 RTYNASYTMSTLLKELSQDPRSKGTIAEKVKLYNDCNRKVAILCNHKRTVGASHEQQMQK 709
Query: 407 LKEKISNKRKQ 417
+ ++I R Q
Sbjct: 710 MGDRIKGLRYQ 720
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 81/105 (77%), Gaps = 1/105 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I+KIR++Y + KS+
Sbjct: 474 ATWLAMWQENINGAYKYVMLGAASDVKGQSDYKKFEKARELKKYIDKIRKDYTRELKSEI 533
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQL 587
M RQRA A+Y ID+LALRAGNEKD E++ADTVGCCSL+ EHI L
Sbjct: 534 MADRQRATAMYLIDQLALRAGNEKDTENEADTVGCCSLKYEHITL 578
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 9/85 (10%)
Query: 407 LKEKISNKRKQVKDAERALKDAKKAGESKA-----MTDKKKTALGRLKEQLLKLEVQETD 461
LKE++ + VKD E K K G+ +A DK A+ +L E++ LE Q D
Sbjct: 794 LKERL----QAVKDLEAKFKKENKTGKVEAEGRGASVDKYLKAIEKLDERVKILETQAED 849
Query: 462 KEENKTIALGTSKLNYLDPRISVTW 486
++ NK +ALGTSK+NY+DPR++V +
Sbjct: 850 RDGNKEVALGTSKINYIDPRLTVVF 874
>gi|303270975|ref|XP_003054849.1| DNA topoisomerase I [Micromonas pusilla CCMP1545]
gi|226462823|gb|EEH60101.1| DNA topoisomerase I [Micromonas pusilla CCMP1545]
Length = 685
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 219/484 (45%), Positives = 308/484 (63%), Gaps = 21/484 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV-ITDLSKCDF 63
G ++ L EE A F+A M + +Y K+ F NF + ++K + A+ I + KCDF
Sbjct: 189 GVDIVLLPHEEEAANFFAVMKDTDYAQKDVFVKNFWEGFKKVLRGGPHAMTIKEFKKCDF 248
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
KM+ + +++ E++KA+S E+KKK K +A ++Y IDG +E++GNFR+EPPGLFR
Sbjct: 249 TKMYMWHLKEREKKKAISNEDKKKAKAAKDAEEEKYNWAVIDGRRERVGNFRVEPPGLFR 308
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRGEHPKMG++K+R+ EDI IN K P P PGHKWK+V H++ VTWL W + +
Sbjct: 309 GRGEHPKMGRIKKRIMPEDITINIGKGVPAPDPGPGHKWKDVIHNDTVTWLCGWNDTINT 368
Query: 184 Q-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ S +K E D QKYE ARKL +++ IR +Y K+ +M +Q AV Y
Sbjct: 369 KDWKYVQFGAMSSIKAESDIQKYEKARKLKLAVDAIRRDYFKKMKTGDMLAKQLAVTTYL 428
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
+DKLALRAG EKDED ADTVG C+LRV H++ P + DFLGKDSIRY E
Sbjct: 429 VDKLALRAGGEKDEDLADTVGVCTLRVGHVEFIT-----PSTLKLDFLGKDSIRYLQEHE 483
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
V+ VF+ +Q F + KK +D+FD+++ S +NKHL LM GLT KVFRTYNAS L + L
Sbjct: 484 VDPLVFEAMQKFCKGKKPDNDIFDQIDPSKVNKHLQTLMPGLTIKVFRTYNASFVLNKLL 543
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
+ +P + K AY+ AN+ VAVLCNHQ+ K+H M EK+ +K+K ++
Sbjct: 544 KD-TNPRDTVPLKKAAYDAANKEVAVLCNHQKGESKAHGAQM----EKLVDKKKAMEKEL 598
Query: 423 RALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRI 482
+AL+ K +K K+ + +KE+L KLE+Q KE+ KT++LGTSK+NYLDPRI
Sbjct: 599 KALRQDK---------EKNKSKISTMKERLAKLELQMKMKEDLKTVSLGTSKINYLDPRI 649
Query: 483 SVTW 486
++ W
Sbjct: 650 TIAW 653
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 68/106 (64%), Gaps = 1/106 (0%)
Query: 483 SVTWLASWTENVQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWL W + + + KY+ S +K E D QKYE ARKL +++ IR +Y K+
Sbjct: 355 TVTWLCGWNDTINTKDWKYVQFGAMSSIKAESDIQKYEKARKLKLAVDAIRRDYFKKMKT 414
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+M +Q AV Y +DKLALRAG EKDED ADTVG C+LRV H++
Sbjct: 415 GDMLAKQLAVTTYLVDKLALRAGGEKDEDLADTVGVCTLRVGHVEF 460
>gi|353239886|emb|CCA71779.1| probable TOP1-DNA topoisomerase I [Piriformospora indica DSM 11827]
Length = 905
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/414 (50%), Positives = 273/414 (65%), Gaps = 11/414 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE---KERAVITDLSKC 61
GK + L ++EE+A F+A M++ E+ + F NF DW++ + E + VI + KC
Sbjct: 296 GKPVDLPPESEEVAGFFAAMLDTEHAQNDVFRKNFFDDWKEVLKEFPPRNGIVIKSMDKC 355
Query: 62 DFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGL 121
DFR M Y + K +SK EK++IK++ + Y C +G EK+GNFR+EPPGL
Sbjct: 356 DFRPMAEYIEAEKARIKRLSKAEKQEIKEKKQKEEAPYATCMFNGRPEKVGNFRVEPPGL 415
Query: 122 FRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENV 181
FRGRGEHPK G +K+RV+ EDI+IN + KVP P KWK V+HDN VTWLA W EN+
Sbjct: 416 FRGRGEHPKKGCVKKRVRPEDIVINIGEGEKVPVPGVPGKWKAVQHDNTVTWLAHWKENI 475
Query: 182 QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALY 241
G KY+ L +S +KG+ D K+E AR+L I++IR +YQ D KSK RQRA A+Y
Sbjct: 476 NGNCKYVFLAATSSIKGKSDRDKFERARELKNHIDRIRSDYQNDLKSKVTADRQRATAMY 535
Query: 242 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEV 301
IDK ALRAGNEK ED+ADTVGCCSLR+EH+ L +K G VV DFLGKDSIRYY E+
Sbjct: 536 LIDKYALRAGNEKGEDEADTVGCCSLRLEHVTL--DKSG---VVILDFLGKDSIRYYKEI 590
Query: 302 -PVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
++ +VFKNL++F KK SD LFDR+ T+ LN HL M+GLTAKVFRTYNAS T +
Sbjct: 591 DDIDPQVFKNLRIFKGSGKKDSDLLFDRVTTAGLNNHLRSYMKGLTAKVFRTYNASTTFE 650
Query: 360 QQLNEL-MDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKIS 412
++L P+ + EK+ AYN AN+ A LCNHQR+ K+H M + +IS
Sbjct: 651 KELLSFEFGPNTLQQEKVNAYNAANKTAAELCNHQRAASKNHAAGMAKMSLQIS 704
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 77/105 (73%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W EN+ G KY+ L +S +KG+ D K+E AR+L I++IR +YQ D KSK
Sbjct: 464 TVTWLAHWKENINGNCKYVFLAATSSIKGKSDRDKFERARELKNHIDRIRSDYQNDLKSK 523
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y IDK ALRAGNEK ED+ADTVGCCSLR+EH+ L
Sbjct: 524 VTADRQRATAMYLIDKYALRAGNEKGEDEADTVGCCSLRLEHVTL 568
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 28/35 (80%)
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ K +++++DKE KTI+L TSK+NYLDPRI+ +
Sbjct: 839 ISKNKLKQSDKESLKTISLTTSKINYLDPRITAAY 873
>gi|336464234|gb|EGO52474.1| DNA topoisomerase I [Neurospora tetrasperma FGSC 2508]
Length = 870
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/424 (49%), Positives = 278/424 (65%), Gaps = 16/424 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWRKSMTEK--------ERAVI 55
G ++L +AEE ATF+ M+ + F NF +D+++ + ++ I
Sbjct: 263 GTPVELDIEAEEAATFFGFMLNSTVNVENPTFQKNFFRDFKEILDRTGGAKDKNGKKVDI 322
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
+ K DF ++ AY +++ + A S EKK K E + Y C DG KEK+GN R
Sbjct: 323 KEFEKLDFSQLWAYKDAQTKAKNARSSAEKKAEKAERDKRDAPYLYCKWDGRKEKVGNPR 382
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+E PGLFRGRG+HPK G +K+RV E I IN K++KVP PP GHKWK V+HDN+ TWLA
Sbjct: 383 VEIPGLFRGRGDHPKTGCIKKRVLPEQITINIGKEAKVPEPPAGHKWKAVQHDNKATWLA 442
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y D KS+ M RQ
Sbjct: 443 MWQENINGHYKYVMLAANSTVKGKADFKKFEKARELKKYIDRIRADYTKDLKSEVMADRQ 502
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E P V FDFLGKDS
Sbjct: 503 RATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLRE-----PNTVIFDFLGKDS 557
Query: 295 IRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IR+YNE V+++VFKNL++F + K+ DD+FDRL T+ LNKHLS M GLTAKVFRTYN
Sbjct: 558 IRFYNEFTVDRQVFKNLKMFKKPPKEDGDDIFDRLTTTQLNKHLSSYMPGLTAKVFRTYN 617
Query: 354 ASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN 413
AS T+ + L EL + + EK+ YN NR VA+LCNH+R+V SH++ M L E+I
Sbjct: 618 ASYTMSKLLQELKVTNATVHEKVKLYNDCNRQVAILCNHKRTVGASHEQQMKKLVEQIKG 677
Query: 414 KRKQ 417
R Q
Sbjct: 678 LRYQ 681
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y D KS+
Sbjct: 438 ATWLAMWQENINGHYKYVMLAANSTVKGKADFKKFEKARELKKYIDRIRADYTKDLKSEV 497
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHE 589
M RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E
Sbjct: 498 MADRQRATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLRE 544
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 41/58 (70%)
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQ 495
+K + AL +L +++ LE+Q D+E NK +ALGTSK+NY+DPR++V + A + ++
Sbjct: 787 VEKLEAALLKLDQRIQTLELQSADREGNKEVALGTSKINYIDPRLTVVFSAKFNVPIE 844
>gi|302511381|ref|XP_003017642.1| hypothetical protein ARB_04524 [Arthroderma benhamiae CBS 112371]
gi|291181213|gb|EFE36997.1| hypothetical protein ARB_04524 [Arthroderma benhamiae CBS 112371]
Length = 838
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/421 (49%), Positives = 273/421 (64%), Gaps = 16/421 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEA-FNTNFMKDWRKSMTEKERA------ 53
++ G + L DAEE+A+ + M+ + + F NF D++ + + A
Sbjct: 274 LKYAGVPVTLHPDAEEVASHFGTMLNSTHNVENPIFQKNFFNDFQAIIKKTGGAKDPQGK 333
Query: 54 --VITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I + SKCDFR + ++ + E++AMS EKK K E +A Y C DG K+K+
Sbjct: 334 PIQIKEFSKCDFRTIFEHYERLRAEKRAMSAAEKKAAKAEKDAAEAPYMYCMWDGRKQKV 393
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G +K RV E I IN KD+ VP PP GH+WKEVRHD +
Sbjct: 394 GNFRVEPPALFRGRGEHPKTGTVKTRVMPEQITINIGKDAPVPAPPEGHRWKEVRHDQEG 453
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 454 TWLAMWQENVNGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIDRIRKDYKKGLKDELM 513
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 514 VNRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTLK-----PPNTVVFDFLG 568
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIRYY+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M GLTAKVFR
Sbjct: 569 KDSIRYYDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSSYMPGLTAKVFR 628
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M + EK+ YN ANR VA+LCNH+R+V H M L ++
Sbjct: 629 TYNASYTMATLLKK-MSATGTIPEKVKQYNDANREVAILCNHKRTVAAGHANQMEKLGDR 687
Query: 411 I 411
I
Sbjct: 688 I 688
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 454 TWLAMWQENVNGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIDRIRKDYKKGLKDELM 513
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 514 VNRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTL 556
>gi|164424928|ref|XP_958033.2| DNA topoisomerase I [Neurospora crassa OR74A]
gi|157070718|gb|EAA28797.2| DNA topoisomerase I [Neurospora crassa OR74A]
Length = 874
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/424 (49%), Positives = 278/424 (65%), Gaps = 16/424 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWRKSMTEK--------ERAVI 55
G ++L +AEE ATF+ M+ + F NF +D+++ + ++ I
Sbjct: 267 GTPVELDIEAEEAATFFGFMLNSTVNVENPTFQKNFFRDFKEILDRTGGAKDKNGKKVDI 326
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
+ K DF ++ AY +++ + A S EKK K E + Y C DG KEK+GN R
Sbjct: 327 KEFEKLDFSQLWAYKDAQTKAKNARSSAEKKAEKAERDKRDAPYLYCKWDGRKEKVGNPR 386
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+E PGLFRGRG+HPK G +K+RV E I IN K++KVP PP GHKWK V+HDN+ TWLA
Sbjct: 387 VEIPGLFRGRGDHPKTGCIKKRVLPEQITINIGKEAKVPEPPAGHKWKAVQHDNKATWLA 446
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y D KS+ M RQ
Sbjct: 447 MWQENINGHYKYVMLAANSTVKGKADFKKFEKARELKKYIDRIRADYTKDLKSEVMADRQ 506
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E P V FDFLGKDS
Sbjct: 507 RATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLRE-----PNTVIFDFLGKDS 561
Query: 295 IRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IR+YNE V+++VFKNL++F + K+ DD+FDRL T+ LNKHLS M GLTAKVFRTYN
Sbjct: 562 IRFYNEFTVDRQVFKNLKMFKKPPKEDGDDIFDRLTTTQLNKHLSSYMPGLTAKVFRTYN 621
Query: 354 ASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN 413
AS T+ + L EL + + EK+ YN NR VA+LCNH+R+V SH++ M L E+I
Sbjct: 622 ASYTMSKLLQELKVTNATVHEKVKLYNDCNRQVAILCNHKRTVGASHEQQMKKLVEQIKG 681
Query: 414 KRKQ 417
R Q
Sbjct: 682 LRYQ 685
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y D KS+
Sbjct: 442 ATWLAMWQENINGHYKYVMLAANSTVKGKADFKKFEKARELKKYIDRIRADYTKDLKSEV 501
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHE 589
M RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E
Sbjct: 502 MADRQRATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLRE 548
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 39/53 (73%)
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
+K + AL +L +++ LE+Q D+E NK +ALGTSK+NY+DPR++V + A +
Sbjct: 791 VEKLEAALEKLDQRIKNLELQSADREGNKEVALGTSKINYIDPRLTVVFSAKF 843
>gi|350296318|gb|EGZ77295.1| DNA topoisomerase I [Neurospora tetrasperma FGSC 2509]
Length = 870
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/424 (49%), Positives = 278/424 (65%), Gaps = 16/424 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWRKSMTEK--------ERAVI 55
G ++L +AEE ATF+ M+ + F NF +D+++ + ++ I
Sbjct: 263 GTPVELDIEAEEAATFFGFMLNSTVNVENPTFQKNFFRDFKEILDRTGGAKDKNGKKVDI 322
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
+ K DF ++ AY +++ + A S EKK K E + Y C DG KEK+GN R
Sbjct: 323 KEFEKLDFSQLWAYKDAQTKAKNARSSAEKKAEKAERDKRDAPYLYCKWDGRKEKVGNPR 382
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+E PGLFRGRG+HPK G +K+RV E I IN K++KVP PP GHKWK V+HDN+ TWLA
Sbjct: 383 VEIPGLFRGRGDHPKTGCIKKRVLPEQITINIGKEAKVPEPPAGHKWKAVQHDNKATWLA 442
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y D KS+ M RQ
Sbjct: 443 MWQENINGHYKYVMLAANSTVKGKADFKKFEKARELKKYIDRIRADYTKDLKSEVMADRQ 502
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E P V FDFLGKDS
Sbjct: 503 RATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLRE-----PNTVIFDFLGKDS 557
Query: 295 IRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IR+YNE V+++VFKNL++F + K+ DD+FDRL T+ LNKHLS M GLTAKVFRTYN
Sbjct: 558 IRFYNEFTVDRQVFKNLKMFKKPPKEDGDDIFDRLTTTQLNKHLSSYMPGLTAKVFRTYN 617
Query: 354 ASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN 413
AS T+ + L EL + + EK+ YN NR VA+LCNH+R+V SH++ M L E+I
Sbjct: 618 ASYTMSKLLQELKVTNATVHEKVKLYNDCNRQVAILCNHKRTVGASHEQQMKKLVEQIKG 677
Query: 414 KRKQ 417
R Q
Sbjct: 678 LRYQ 681
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y D KS+
Sbjct: 438 ATWLAMWQENINGHYKYVMLAANSTVKGKADFKKFEKARELKKYIDRIRADYTKDLKSEV 497
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHE 589
M RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E
Sbjct: 498 MADRQRATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLRE 544
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 41/58 (70%)
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQ 495
+K + AL +L +++ LE+Q D+E NK +ALGTSK+NY+DPR++V + A + ++
Sbjct: 787 VEKLEAALLKLDQRIKTLELQSADREGNKEVALGTSKINYIDPRLTVVFSAKFNVPIE 844
>gi|322707004|gb|EFY98583.1| topoisomerase I [Metarhizium anisopliae ARSEF 23]
Length = 907
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/431 (50%), Positives = 284/431 (65%), Gaps = 23/431 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMI---EHEYTTKEAFNTNFMKDWRK------SMTEKE--RA 53
GK + LS++AEE+ATF+ M+ + F NF D+ + T++E +
Sbjct: 293 GKPVTLSKEAEEVATFWVAMMTPASSHHLDNPVFRNNFFTDFSEIVKKNGGATDREGNKV 352
Query: 54 VITDLSKCDFRKMHAYFVQKSEERKA--MSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I L KCDF K++ +++ K+E K +SKEEK+ K + +A+ Y C DG K+K+
Sbjct: 353 QIKSLDKCDFSKIYDHWLAKTEANKTKNLSKEEKEAAKAKKDALEAPYLYCIWDGRKQKV 412
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RV E I IN KD+K+P PP GHKWK V+HD +
Sbjct: 413 GNFRVEPPSLFRGRGEHPKTGRVKTRVFPEQITINIGKDAKIPEPPAGHKWKAVQHDQKA 472
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I+KIR++Y + KS+ M
Sbjct: 473 TWLAMWQENINGAYKYVMLGAASDVKGQSDYKKFEKARELKKYIDKIRKDYTRELKSEVM 532
Query: 232 RIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFL 290
RQRA A+Y ID+LALRAGNEKD E++ADTVGCCSL+ EHI L P V FDFL
Sbjct: 533 ADRQRATAMYLIDQLALRAGNEKDTENEADTVGCCSLKYEHITLEP-----PNKVTFDFL 587
Query: 291 GKDSIRYYNEVPVEKRVFKNLQLFVENKKG-SDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
GKDSIRY VE +VFKNL+LF + K DDLFDRL TS LNKHL+ M GLTAKVF
Sbjct: 588 GKDSIRYNETALVEPQVFKNLKLFKKAPKSDGDDLFDRLTTSQLNKHLNSYMTGLTAKVF 647
Query: 350 RTYNASITLQQQLNEL-MDP--DFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGN 406
RTYNAS T+ L EL DP S AEK+ YN NR VA+LCNH+R+V H++ M
Sbjct: 648 RTYNASYTMSTLLKELSQDPRSKGSIAEKVKLYNDCNRKVAILCNHKRTVGAGHEQQMQK 707
Query: 407 LKEKISNKRKQ 417
+ ++I R Q
Sbjct: 708 MGDRIKGLRYQ 718
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 81/105 (77%), Gaps = 1/105 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I+KIR++Y + KS+
Sbjct: 472 ATWLAMWQENINGAYKYVMLGAASDVKGQSDYKKFEKARELKKYIDKIRKDYTRELKSEV 531
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQL 587
M RQRA A+Y ID+LALRAGNEKD E++ADTVGCCSL+ EHI L
Sbjct: 532 MADRQRATAMYLIDQLALRAGNEKDTENEADTVGCCSLKYEHITL 576
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 418 VKDAERALKDAKKAGESKA-----MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGT 472
VKD E + K G+ +A DK A+ +L E++ LE Q D++ NK +ALGT
Sbjct: 799 VKDLETKFRKENKIGKVEAEGRGASVDKYLKAIEKLDERVKVLETQAEDRDGNKEVALGT 858
Query: 473 SKLNYLDPRISVTW 486
SK+NY+DPR++V +
Sbjct: 859 SKINYIDPRLTVVF 872
>gi|381143881|gb|AFF58601.1| topoisomerase I, partial [Bembidion transparens]
Length = 272
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/255 (76%), Positives = 221/255 (86%), Gaps = 5/255 (1%)
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
YFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNE
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNE 60
Query: 301 VPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
VPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQ
Sbjct: 61 VPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 120
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKD 420
QL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM LKEKI KR+Q+ D
Sbjct: 121 QLDELTNGDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITD 180
Query: 421 AERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
A++ +KDA++ + + K + DKKK L RLKEQL+KLEVQETD++ENK+IALGTSKL
Sbjct: 181 AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMKLEVQETDRDENKSIALGTSKL 240
Query: 476 NYLDPRISVTWLASW 490
NYLDPRISV W +
Sbjct: 241 NYLDPRISVAWCKKY 255
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 40/41 (97%)
Query: 554 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
YFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGK 41
>gi|381143723|gb|AFF58522.1| topoisomerase I, partial [Bembidion humboldtense]
Length = 260
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/255 (76%), Positives = 221/255 (86%), Gaps = 5/255 (1%)
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
YFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNE
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNE 60
Query: 301 VPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
VPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQ
Sbjct: 61 VPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 120
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKD 420
QL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM LKEKI KR+Q+ D
Sbjct: 121 QLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIAD 180
Query: 421 AERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
A++ +KDA++ + + K + DKKK L RLKEQL+KLEVQETD++ENK+IALGTSKL
Sbjct: 181 AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQETDRDENKSIALGTSKL 240
Query: 476 NYLDPRISVTWLASW 490
NYLDPRISV W +
Sbjct: 241 NYLDPRISVAWCKKY 255
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 40/41 (97%)
Query: 554 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
YFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGK 41
>gi|389624723|ref|XP_003710015.1| DNA topoisomerase 1 [Magnaporthe oryzae 70-15]
gi|351649544|gb|EHA57403.1| DNA topoisomerase 1 [Magnaporthe oryzae 70-15]
gi|440474837|gb|ELQ43557.1| DNA topoisomerase 1 [Magnaporthe oryzae Y34]
gi|440480416|gb|ELQ61078.1| DNA topoisomerase 1 [Magnaporthe oryzae P131]
Length = 906
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 212/422 (50%), Positives = 280/422 (66%), Gaps = 23/422 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEK------------ER 52
G ++L +AEE+ATF+ M+ ++T+ N F+K++ +K +
Sbjct: 298 GIPLQLHPEAEEVATFFGSML---HSTQNVENPTFIKNFFTGFKDKLKKTGGAKDKNGNK 354
Query: 53 AVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIG 112
I + K DF+ + +F +SE +KA SKEEKK K+ + + + Y C DG KEK+G
Sbjct: 355 VDIKEFEKLDFKPIFQHFQAQSEAKKARSKEEKKAEKEARDKMEEPYKYCKWDGRKEKVG 414
Query: 113 NFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVT 172
NFR+EPP LFRGRGEHPK G +K RV E + IN K +KVP PP GHKWK V+HDN+ T
Sbjct: 415 NFRVEPPALFRGRGEHPKTGTIKERVPPEAVTINIGKGAKVPEPPAGHKWKAVQHDNKAT 474
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y + +S+ M
Sbjct: 475 WLAMWQENVNGNYKYVMLAANSAVKGQADFKKFEKARELKKHIDRIRADYTRELRSEIMA 534
Query: 233 IRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+YFIDKLALRAGNEKD E++A+TVGCCSL+VE++ L P V DFLG
Sbjct: 535 DRQRATAMYFIDKLALRAGNEKDTENEAETVGCCSLKVENVSLQP-----PNKVFLDFLG 589
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVENKK-GSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+ EV V+ +VFKNL++F + K DD+FDRL TS LNKHLS M GLTAKVFR
Sbjct: 590 KDSIRFEQEVEVDAQVFKNLKMFKKAPKVEGDDIFDRLTTSQLNKHLSSYMPGLTAKVFR 649
Query: 351 TYNASITLQQQLNELMD-PDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
TYNAS T+ L +L + S+AEK+ YN NR VA+LCNH+RSV SHD M L +
Sbjct: 650 TYNASYTMSTLLQKLHSKKNISDAEKVKIYNDCNRQVAILCNHKRSVGASHDAQMKKLGD 709
Query: 410 KI 411
+I
Sbjct: 710 RI 711
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/106 (57%), Positives = 82/106 (77%), Gaps = 1/106 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y + +S+
Sbjct: 473 ATWLAMWQENVNGNYKYVMLAANSAVKGQADFKKFEKARELKKHIDRIRADYTRELRSEI 532
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLH 588
M RQRA A+YFIDKLALRAGNEKD E++A+TVGCCSL+VE++ L
Sbjct: 533 MADRQRATAMYFIDKLALRAGNEKDTENEAETVGCCSLKVENVSLQ 578
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 32/40 (80%)
Query: 447 RLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+L E++ +E+Q D++ NK +ALGTSK+NY+DPR++V +
Sbjct: 832 KLDERIRTMELQAADRDGNKEVALGTSKINYIDPRLTVVF 871
>gi|381143609|gb|AFF58465.1| topoisomerase I, partial [Bembidion (Zecillenus) sp. 1 DRM-2012]
Length = 271
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/255 (76%), Positives = 219/255 (85%), Gaps = 5/255 (1%)
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
YFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNE
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNE 60
Query: 301 VPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
VPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQ
Sbjct: 61 VPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 120
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKD 420
QL+EL D + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM LKEKI KR+Q+ D
Sbjct: 121 QLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITD 180
Query: 421 AERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
A++ +KDA++ + + K + DKKK L RLKEQL+KLEVQETD++ENK IALGTSKL
Sbjct: 181 AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQETDRDENKAIALGTSKL 240
Query: 476 NYLDPRISVTWLASW 490
NYLDPRISV W +
Sbjct: 241 NYLDPRISVAWCKKY 255
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 40/41 (97%)
Query: 554 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
YFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGK 41
>gi|381143693|gb|AFF58507.1| topoisomerase I, partial [Bembidion farrarae]
Length = 263
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/255 (76%), Positives = 220/255 (86%), Gaps = 5/255 (1%)
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
YFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNE
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNE 60
Query: 301 VPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
VPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQ
Sbjct: 61 VPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 120
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKD 420
QL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM LKEKI KR+Q+ D
Sbjct: 121 QLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIDQKREQITD 180
Query: 421 AERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
A++ +KDA++ + + K + DKKK L RLKEQL+KLEVQETD++ENK IALGTSKL
Sbjct: 181 AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLMKLEVQETDRDENKAIALGTSKL 240
Query: 476 NYLDPRISVTWLASW 490
NYLDPRISV W +
Sbjct: 241 NYLDPRISVAWCKKY 255
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 40/41 (97%)
Query: 554 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
YFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGK 41
>gi|381143851|gb|AFF58586.1| topoisomerase I, partial [Bembidion sexfoveatum]
Length = 260
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/255 (75%), Positives = 221/255 (86%), Gaps = 5/255 (1%)
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
YFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNE
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNE 60
Query: 301 VPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
VPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQ
Sbjct: 61 VPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 120
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKD 420
QL+EL + + + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM LKEKI KR+Q+ D
Sbjct: 121 QLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITD 180
Query: 421 AERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
A++ +KDA++ + + K + DKKK L RLKEQL+KLEVQETD++ENK+IALGTSKL
Sbjct: 181 AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQETDRDENKSIALGTSKL 240
Query: 476 NYLDPRISVTWLASW 490
NYLDPRISV W +
Sbjct: 241 NYLDPRISVAWCKKY 255
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 40/41 (97%)
Query: 554 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
YFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGK 41
>gi|301118855|ref|XP_002907155.1| DNA topoisomerase, putative [Phytophthora infestans T30-4]
gi|262105667|gb|EEY63719.1| DNA topoisomerase, putative [Phytophthora infestans T30-4]
Length = 717
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 225/529 (42%), Positives = 317/529 (59%), Gaps = 53/529 (10%)
Query: 5 GKEMKLSQDAEEIATFYARMIEH-----EYTTKEAFNTNFMKDWRKSMTEKERAVITDLS 59
G+E++L+ EE+A+FYA + + T + FN NF D++K + ++ +
Sbjct: 163 GQEIELTPSQEEVASFYAAIPKDGPQLGNPKTAKIFNKNFFTDFKKVLGKQHE--VKTFD 220
Query: 60 KCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPP 119
CDF ++ A+ + EE+K M+KEEK K++ E G +DGH EK+GNFRIEPP
Sbjct: 221 GCDFSRIAAHLEKLREEKKNMTKEEKLPEKEKREMELFTNGFAFVDGHLEKVGNFRIEPP 280
Query: 120 GLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVP-PPPPGHKWKEVRHDNQVTWLASWT 178
GLFRGRGEHPK G LK RV ED+ +N +VP PGH WK+V H + V+WLA W
Sbjct: 281 GLFRGRGEHPKTGTLKERVMPEDVTVNVGISDRVPICNVPGHAWKQVIHRDTVSWLAYWN 340
Query: 179 ENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
ENV G +KY+ SS KG+ D KYE AR+L K I+KIR +Y K+K+M +QR+
Sbjct: 341 ENVMGGIKYVFFAASSSFKGKSDLAKYEKARRLKKCIDKIRRDYTKGLKAKDMFTKQRST 400
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A++ ID LALR GNEK ED+ADTVGCCSLRVEH+ ++E V FLGKDS+ Y
Sbjct: 401 AMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHMSFNDEN----CAVTLSFLGKDSMPYN 456
Query: 299 NEVP------VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTY 352
N V V K+V+ NLQ F K ++++F L+ + LNKHLS LM GL+AKVFRT+
Sbjct: 457 NTVELAQYGDVGKQVYHNLQKFCTKKGKNEEVFHELSVTELNKHLSSLMPGLSAKVFRTF 516
Query: 353 NASITLQQQL----NELMDPD--FSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGN 406
NAS TL+++L + +DP A K++ YN ANR VA+LCNHQR+ PKS D ++
Sbjct: 517 NASFTLEKELPGPSGQELDPHGKLEVAPKVVLYNDANRKVAILCNHQRTAPKSFDTTLDK 576
Query: 407 LKEKISNKRKQVKDAERALK-------DAKKAGESKAMTDKKKTALGR------------ 447
+ ++ + Q+KD ++ K + K + K ++K++ AL +
Sbjct: 577 MNAQLGQLKDQLKDLKQMQKLIAAGKGSSVKLKKEKPASEKEEDALAKKAQAHLFQRTPS 636
Query: 448 ----------LKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
K+++ L ++ DK +NK +ALGTSKLNY+DPRI+V W
Sbjct: 637 ADQVAKKIESWKKKIKALSLRLQDKTDNKEVALGTSKLNYMDPRITVAW 685
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 79/110 (71%)
Query: 481 RISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWK 540
R +V+WLA W ENV G +KY+ SS KG+ D KYE AR+L K I+KIR +Y K
Sbjct: 330 RDTVSWLAYWNENVMGGIKYVFFAASSSFKGKSDLAKYEKARRLKKCIDKIRRDYTKGLK 389
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
+K+M +QR+ A++ ID LALR GNEK ED+ADTVGCCSLRVEH+ ++E
Sbjct: 390 AKDMFTKQRSTAMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHMSFNDE 439
>gi|381143891|gb|AFF58606.1| topoisomerase I, partial [Bembidion versicolor]
Length = 268
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/254 (76%), Positives = 218/254 (85%), Gaps = 5/254 (1%)
Query: 242 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEV 301
FID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEV
Sbjct: 1 FIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEV 60
Query: 302 PVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
PVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQ
Sbjct: 61 PVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQ 120
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
L+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA
Sbjct: 121 LDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADA 180
Query: 422 ERALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLN 476
++ +KDA+K + K + DKKK L RLKEQL+KLEVQETD++ENK IALGTSKLN
Sbjct: 181 QKQVKDAQKDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLN 240
Query: 477 YLDPRISVTWLASW 490
YLDPRISV W +
Sbjct: 241 YLDPRISVAWCKKY 254
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/40 (90%), Positives = 39/40 (97%)
Query: 555 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
FID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K
Sbjct: 1 FIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGK 40
>gi|381143669|gb|AFF58495.1| topoisomerase I, partial [Bembidion connivens]
Length = 269
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/255 (75%), Positives = 220/255 (86%), Gaps = 5/255 (1%)
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
YFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNE
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNE 60
Query: 301 VPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
VPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQ
Sbjct: 61 VPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 120
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKD 420
QL+EL + + + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM LKEKI KR+Q+ D
Sbjct: 121 QLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITD 180
Query: 421 AERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
A++ +KDA++ + + K + DKKK L RL+EQL+KLEVQETD++ENK IALGTSKL
Sbjct: 181 AQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLREQLIKLEVQETDRDENKAIALGTSKL 240
Query: 476 NYLDPRISVTWLASW 490
NYLDPRISV W +
Sbjct: 241 NYLDPRISVAWCKKY 255
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 40/41 (97%)
Query: 554 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
YFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGK 41
>gi|32264964|gb|AAP78904.1| type IB DNA topoisomerase large subunit [Trypanosoma brucei]
gi|261327436|emb|CBH10411.1| DNA topoisomerase IB, large subunit, putative [Trypanosoma brucei
gambiense DAL972]
Length = 696
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/420 (47%), Positives = 282/420 (67%), Gaps = 9/420 (2%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRK 65
++ +++ + EE+AT +A + EH+Y E F NF + WR+ + +K + I L CDF
Sbjct: 135 QKFEMTPEEEEVATMFAVLREHDYYRNEVFRRNFFQSWRE-ILDKRKHPIRCLELCDFSA 193
Query: 66 MHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGR 125
++ + ++ E+RK+ ++EEKK++K + + Y C +G KE++ NFR+EPPGLFRGR
Sbjct: 194 IYEWHQREVEKRKSRTREEKKELKRIADEEAEPYKWCIWNGKKEQVANFRVEPPGLFRGR 253
Query: 126 GEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQV 185
GEHP GKLK+R+ ED+++N K++ +P P GHKWK V HD VTWLA W E GQ
Sbjct: 254 GEHPMRGKLKKRILPEDVVLNIGKEAPIPQAPAGHKWKGVVHDQNVTWLAMWYEPTIGQC 313
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDK 245
KY+ML PSS LKG+ D+ K+ETAR+L I+ IRE+Y D+ S + RQRAVA YFIDK
Sbjct: 314 KYVMLAPSSTLKGQSDYAKFETARELKNHIDDIRESYTKDFSSTDEMERQRAVATYFIDK 373
Query: 246 LALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEK 305
LALR G+EK E++ADTVGCCSLR EHI+L + VV FDFLGKDSIRY NEV V
Sbjct: 374 LALRVGHEKGEEEADTVGCCSLRKEHIELRPDN-----VVRFDFLGKDSIRYVNEVTVLP 428
Query: 306 RVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE- 364
V+K L F+ K+ ++F ++ + LN +L ++ L+AKVFRTYNASITL + E
Sbjct: 429 EVYKLLGSFI--KRTDSEIFRKVTPTTLNNYLKSFLKDLSAKVFRTYNASITLDEWFREK 486
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
+DP S ++K++ +N+AN VA LCNHQRS+PK+ S+ ++K K+ + ++ + RA
Sbjct: 487 PVDPKASLSDKLVYFNKANTEVAKLCNHQRSIPKTFHVSVQSIKYKLEDIKRTIDTLRRA 546
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 80/105 (76%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W E GQ KY+ML PSS LKG+ D+ K+ETAR+L I+ IRE+Y D+ S
Sbjct: 298 NVTWLAMWYEPTIGQCKYVMLAPSSTLKGQSDYAKFETARELKNHIDDIRESYTKDFSST 357
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+ RQRAVA YFIDKLALR G+EK E++ADTVGCCSLR EHI+L
Sbjct: 358 DEMERQRAVATYFIDKLALRVGHEKGEEEADTVGCCSLRKEHIEL 402
>gi|381143847|gb|AFF58584.1| topoisomerase I, partial [Bembidion semicinctum]
Length = 264
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/254 (75%), Positives = 219/254 (86%), Gaps = 5/254 (1%)
Query: 242 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEV 301
FID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEV
Sbjct: 1 FIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEV 60
Query: 302 PVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
PVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQ
Sbjct: 61 PVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQ 120
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
L+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA
Sbjct: 121 LDELTNGDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDA 180
Query: 422 ERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLN 476
++ +KDA++ + + K + DKKK L RLKEQL+KLEVQETD++ENK IALGTSKLN
Sbjct: 181 QKQVKDAQRDAKHGSVKEKVVYDKKKKTLERLKEQLIKLEVQETDRDENKAIALGTSKLN 240
Query: 477 YLDPRISVTWLASW 490
YLDPRISV W +
Sbjct: 241 YLDPRISVAWCKKY 254
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/40 (90%), Positives = 39/40 (97%)
Query: 555 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
FID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K
Sbjct: 1 FIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGK 40
>gi|408388293|gb|EKJ67979.1| hypothetical protein FPSE_11790 [Fusarium pseudograminearum CS3096]
Length = 906
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/430 (49%), Positives = 286/430 (66%), Gaps = 22/430 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMIEH---EYTTKEAFNTNFMKDWRK-------SMTEKERAV 54
G+ + L+ + EE+ATF+ M+ + F NF +D++ + + ++
Sbjct: 293 GQPVTLAPEVEEVATFWVAMMTAASIHHLENPVFRKNFFEDFKVYCDKYGVTDAQGKKVA 352
Query: 55 ITDLSKCDFRKMHAYFVQKSEERKA--MSKEEKKKIKDENEAITKEYGVCTIDGHKEKIG 112
I L KC+F K++ Y+ ++ E+ K M+KEEK+ K + +A+ + CT DG KEK+G
Sbjct: 353 IKSLDKCNFDKINDYWTKRVEQNKTKNMTKEEKEAAKAKKDALEAPFTHCTWDGRKEKVG 412
Query: 113 NFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVT 172
NFR+EPP LFRGRGEHPK GK+K+RVQ E I IN K +K+P PP GH+WK V+HD + T
Sbjct: 413 NFRVEPPSLFRGRGEHPKTGKVKQRVQPEQITINIGKGAKIPEPPKGHQWKAVQHDQKAT 472
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA W EN+ KY+ML S +KG+ D++K+E AR+L K I+KIR++Y + KS+ M
Sbjct: 473 WLAMWQENINQNYKYVMLGADSAIKGQSDFKKFEKARELKKHIDKIRKDYTKELKSEIMA 532
Query: 233 IRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+YFIDKLALRAGNEKD E++ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 533 DRQRATAMYFIDKLALRAGNEKDTENEADTVGCCSLKYEHVTLEP-----PNKVTFDFLG 587
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVENKKGS-DDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSI Y V+ +VFKNL+LF + K + DDLFDRL TS LNKHL+ M+GLTAKVFR
Sbjct: 588 KDSIPYRETAVVDAQVFKNLKLFKKAPKTTGDDLFDRLTTSQLNKHLTSYMKGLTAKVFR 647
Query: 351 TYNASITLQQQLNEL-MDPDF--SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNL 407
TYNAS T+ LN+L DP + AEK+ YN NR VA+LCNH+R+V SH++ M L
Sbjct: 648 TYNASFTMSTLLNKLGSDPRSRGTVAEKVKLYNDCNREVAILCNHKRTVGASHEQQMAKL 707
Query: 408 KEKISNKRKQ 417
++I R Q
Sbjct: 708 GDRIKGLRYQ 717
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ KY+ML S +KG+ D++K+E AR+L K I+KIR++Y + KS+
Sbjct: 471 ATWLAMWQENINQNYKYVMLGADSAIKGQSDFKKFEKARELKKHIDKIRKDYTKELKSEI 530
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQL 587
M RQRA A+YFIDKLALRAGNEKD E++ADTVGCCSL+ EH+ L
Sbjct: 531 MADRQRATAMYFIDKLALRAGNEKDTENEADTVGCCSLKYEHVTL 575
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 436 AMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
A DK A+ + E++ LE+Q D++ NK +ALGTSK+NY+DPR++V +
Sbjct: 821 ATVDKFLKAVDKFDERIKTLELQAQDRDGNKEVALGTSKINYIDPRLTVVF 871
>gi|72387718|ref|XP_844283.1| DNA topoisomerase IB, large subunit [Trypanosoma brucei TREU927]
gi|62359435|gb|AAX79872.1| DNA topoisomerase IB, large subunit [Trypanosoma brucei]
gi|70800816|gb|AAZ10724.1| DNA topoisomerase IB, large subunit [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 661
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/434 (46%), Positives = 287/434 (66%), Gaps = 9/434 (2%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRK 65
++ +++ + EE+AT +A + EH+Y E F NF + WR+ + +K + I L CDF
Sbjct: 100 QKFEMTPEEEEVATMFAVLREHDYYRNEVFRRNFFQSWRE-ILDKRKHPIRCLELCDFSA 158
Query: 66 MHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGR 125
++ + ++ E+RK+ ++EEKK++K + + Y C +G KE++ NFR+EPPGLFRGR
Sbjct: 159 IYEWHQREVEKRKSRTREEKKELKRIADEEAEPYKWCIWNGKKEQVANFRVEPPGLFRGR 218
Query: 126 GEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQV 185
GEHP GKLK+R+ ED+++N K++ +P P GHKWK V HD VTWLA W E GQ
Sbjct: 219 GEHPMRGKLKKRILPEDVVLNIGKEAPIPQAPAGHKWKGVVHDQNVTWLAMWYEPTIGQC 278
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDK 245
KY+ML PSS LKG+ D+ K+ETAR+L I+ IRE+Y D+ S + RQRAVA YFIDK
Sbjct: 279 KYVMLAPSSTLKGQSDYAKFETARELKNHIDDIRESYTKDFSSTDEMERQRAVATYFIDK 338
Query: 246 LALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEK 305
LALR G+EK E++ADTVGCCSLR EHI+L + VV FDFLGKDSIRY NEV V
Sbjct: 339 LALRVGHEKGEEEADTVGCCSLRKEHIELRPDN-----VVRFDFLGKDSIRYVNEVTVLP 393
Query: 306 RVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE- 364
V+K L F+ K+ ++F ++ + LN +L ++ L+AKVFRTYNASITL + E
Sbjct: 394 EVYKLLGSFI--KRTDSEIFRKVTPTTLNNYLKSFLKDLSAKVFRTYNASITLDEWFREK 451
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
+DP S ++K++ +N+AN VA LCNHQRS+PK+ S+ ++K K+ + ++ + RA
Sbjct: 452 PVDPKASLSDKLVYFNKANTEVAKLCNHQRSIPKTFHVSVQSIKYKLEDIKRTIDTLRRA 511
Query: 425 LKDAKKAGESKAMT 438
++ +A T
Sbjct: 512 QSVSENGSVEEAAT 525
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 80/105 (76%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W E GQ KY+ML PSS LKG+ D+ K+ETAR+L I+ IRE+Y D+ S
Sbjct: 263 NVTWLAMWYEPTIGQCKYVMLAPSSTLKGQSDYAKFETARELKNHIDDIRESYTKDFSST 322
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+ RQRAVA YFIDKLALR G+EK E++ADTVGCCSLR EHI+L
Sbjct: 323 DEMERQRAVATYFIDKLALRVGHEKGEEEADTVGCCSLRKEHIEL 367
>gi|294896326|ref|XP_002775501.1| DNA topoisomerase I, putative [Perkinsus marinus ATCC 50983]
gi|239881724|gb|EER07317.1| DNA topoisomerase I, putative [Perkinsus marinus ATCC 50983]
Length = 647
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 222/505 (43%), Positives = 321/505 (63%), Gaps = 27/505 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ + L +AEE+ATF+A+ + ++ KE F NF D++ + ++ ++ IT L CDF
Sbjct: 121 GEPIDLPPEAEEVATFFAQTLGTDWCQKEKFQNNFWADFQAKLPKELKSKITKLKDCDFE 180
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+ Y ++SE +KA +KEEK+ K+ Y +D +E++GNFR+EPP LFRG
Sbjct: 181 PIKNYLDKRSEAKKARTKEEKEAEKEAKRLNDHPYTHVIVDELRERVGNFRVEPPNLFRG 240
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVP-PPPPGHKWKEVRHDNQVTWLASWTENVQG 183
RG+HPKMGKLK+ + ED+ +NC+ D+ P P PGH +K+V HD VTWLA +T+ +
Sbjct: 241 RGDHPKMGKLKQYILPEDVTVNCAADAPAPRCPVPGHAYKDVVHDPAVTWLAWFTDTINN 300
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
QVKY+ LN +S KG+ DW KYE ARKL K I IR++Y KS + ++ A+Y I
Sbjct: 301 QVKYVFLNAASGFKGQSDWLKYEKARKLKKYIRGIRDDYTKKMKSTDDDEKELGTAVYLI 360
Query: 244 DKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
D+LALR GNEK+ E++ADTVGCCSLRVEH+ E D K + DFLGKDSIRY N V
Sbjct: 361 DRLALRVGNEKNTEEEADTVGCCSLRVEHMTF--EADNK---ITLDFLGKDSIRYLNTVQ 415
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
V+ V+KNL+ + +K D +F ++ S +N + + M+ L+AKVFRTYNASITL+Q+L
Sbjct: 416 VDPLVYKNLKALCKARKPEDMIFS-IDPSKVNDYFKQFMQELSAKVFRTYNASITLEQEL 474
Query: 363 NELMDP---DFSE-AEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
+ DP D S+ +E + YN ANR VA+LCNHQR+ PK H+ M LK+K++++ +
Sbjct: 475 CKF-DPEEHDISDPSEMVKFYNDANRRVAILCNHQRAPPKQHEAGMERLKKKLADQEATL 533
Query: 419 KDAE---------RALKDAKKAGESKAM--TDKKKTALGRLKEQLLKLE---VQETDKEE 464
+ E KD K+ K + ++ + + ++K Q L E +Q DKE+
Sbjct: 534 RGLEGRRDELLGKTVSKDVKEIIVEKKLEKSNNMDSLVRKIKSQKLAAERTKIQIADKED 593
Query: 465 NKTIALGTSKLNYLDPRISVTWLAS 489
NKT++L TSK+NY+DPRISV + S
Sbjct: 594 NKTVSLTTSKINYMDPRISVAFCKS 618
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 105/186 (56%), Gaps = 21/186 (11%)
Query: 407 LKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQ---ETDKE 463
L+E++ N R + + R D K +G+LK+ +L +V D
Sbjct: 223 LRERVGNFRVEPPNLFRGRGDHPK--------------MGKLKQYILPEDVTVNCAADAP 268
Query: 464 ENKTIALGTSKLNYL-DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETAR 522
+ G + + + DP +VTWLA +T+ + QVKY+ LN +S KG+ DW KYE AR
Sbjct: 269 APRCPVPGHAYKDVVHDP--AVTWLAWFTDTINNQVKYVFLNAASGFKGQSDWLKYEKAR 326
Query: 523 KLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLR 581
KL K I IR++Y KS + ++ A+Y ID+LALR GNEK+ E++ADTVGCCSLR
Sbjct: 327 KLKKYIRGIRDDYTKKMKSTDDDEKELGTAVYLIDRLALRVGNEKNTEEEADTVGCCSLR 386
Query: 582 VEHIQL 587
VEH+
Sbjct: 387 VEHMTF 392
>gi|46124993|ref|XP_387050.1| hypothetical protein FG06874.1 [Gibberella zeae PH-1]
Length = 910
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/430 (49%), Positives = 285/430 (66%), Gaps = 22/430 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMIEH---EYTTKEAFNTNFMKDWRK-------SMTEKERAV 54
G+ + L+ + EE+ATF+ M+ + F NF D++ + + ++
Sbjct: 297 GQPVTLAPEVEEVATFWVAMMTAASIHHLENPVFRKNFFDDFKVYCDKYGVTDVQGKKVA 356
Query: 55 ITDLSKCDFRKMHAYFVQKSEERKA--MSKEEKKKIKDENEAITKEYGVCTIDGHKEKIG 112
I L KC+F K++ Y+ ++ E+ K M+KEEK+ K + +A+ + CT DG KEK+G
Sbjct: 357 IKSLDKCNFDKINDYWTKRVEQNKTKNMTKEEKEAAKAKKDALEAPFTHCTWDGRKEKVG 416
Query: 113 NFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVT 172
NFR+EPP LFRGRGEHPK GK+K+RVQ E I IN K +K+P PP GH+WK V+HD + T
Sbjct: 417 NFRVEPPSLFRGRGEHPKTGKVKQRVQPEQITINIGKGAKIPEPPKGHQWKAVQHDQKAT 476
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA W EN+ KY+ML S +KG+ D++K+E AR+L K I+KIR++Y + KS+ M
Sbjct: 477 WLAMWQENINQNYKYVMLGADSAIKGQSDFKKFEKARELKKHIDKIRKDYTKELKSEIMA 536
Query: 233 IRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+YFIDKLALRAGNEKD E++ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 537 DRQRATAMYFIDKLALRAGNEKDTENEADTVGCCSLKYEHVTLEP-----PNKVTFDFLG 591
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVENKKGS-DDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSI Y V+ +VFKNL+LF + K + DDLFDRL TS LNKHL+ M+GLTAKVFR
Sbjct: 592 KDSIPYRETAVVDAQVFKNLKLFKKAPKTTGDDLFDRLTTSQLNKHLTSYMKGLTAKVFR 651
Query: 351 TYNASITLQQQLNEL-MDPDF--SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNL 407
TYNAS T+ LN+L DP + AEK+ YN NR VA+LCNH+R+V SH++ M L
Sbjct: 652 TYNASFTMSTLLNKLGSDPRSRGTVAEKVKLYNDCNREVAILCNHKRTVGASHEQQMAKL 711
Query: 408 KEKISNKRKQ 417
++I R Q
Sbjct: 712 GDRIKGLRYQ 721
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ KY+ML S +KG+ D++K+E AR+L K I+KIR++Y + KS+
Sbjct: 475 ATWLAMWQENINQNYKYVMLGADSAIKGQSDFKKFEKARELKKHIDKIRKDYTKELKSEI 534
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQL 587
M RQRA A+YFIDKLALRAGNEKD E++ADTVGCCSL+ EH+ L
Sbjct: 535 MADRQRATAMYFIDKLALRAGNEKDTENEADTVGCCSLKYEHVTL 579
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 436 AMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
A DK A+ + E++ LE+Q D++ NK +ALGTSK+NY+DPR++V +
Sbjct: 825 ATVDKFLKAVDKFDERIKTLELQAQDRDGNKEVALGTSKINYIDPRLTVVF 875
>gi|381143647|gb|AFF58484.1| topoisomerase I, partial [Bembidion (Furcacampa) cf. cognatum
DRM-2012]
Length = 265
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/254 (75%), Positives = 219/254 (86%), Gaps = 5/254 (1%)
Query: 242 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEV 301
FID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEV
Sbjct: 1 FIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEV 60
Query: 302 PVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
PVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQ
Sbjct: 61 PVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQ 120
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
L+EL + + + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA
Sbjct: 121 LDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADA 180
Query: 422 ERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLN 476
++ +KDA+K + + K + DKKK L RLKEQL+KLEVQETD++ENK IALGTSKLN
Sbjct: 181 QKQVKDAQKDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLN 240
Query: 477 YLDPRISVTWLASW 490
YLDPRISV W +
Sbjct: 241 YLDPRISVAWCKKY 254
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/40 (90%), Positives = 39/40 (97%)
Query: 555 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
FID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K
Sbjct: 1 FIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGK 40
>gi|189094079|gb|ACD75867.1| topoisomerase I [Calosoma scrutator]
Length = 281
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/264 (75%), Positives = 225/264 (85%), Gaps = 5/264 (1%)
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KD K YVV FDFLG
Sbjct: 1 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDDKEYVVVFDFLG 60
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRT 351
KDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRT
Sbjct: 61 KDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRT 120
Query: 352 YNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
YNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKEKI
Sbjct: 121 YNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEKI 180
Query: 412 SNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENK 466
K+ + + ER ++DA++A + K + DKKK AL +LK+QL+KLEVQETDK+ENK
Sbjct: 181 EQKKDTISEMERQVQDAQRAAKRGSVKEKVVYDKKKKALEKLKDQLVKLEVQETDKDENK 240
Query: 467 TIALGTSKLNYLDPRISVTWLASW 490
+IALGTSKLNYLDPRISV W +
Sbjct: 241 SIALGTSKLNYLDPRISVAWCKKY 264
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/50 (94%), Positives = 49/50 (98%)
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI LHE+KD+K
Sbjct: 1 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHITLHEQKDDK 50
>gi|237638746|gb|ACR07927.1| topoisomerase I [Fusarium culmorum]
Length = 909
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 213/430 (49%), Positives = 285/430 (66%), Gaps = 22/430 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMIEH---EYTTKEAFNTNFMKDWRK-------SMTEKERAV 54
G+ + L+ + EE+ATF+ M+ + F NF D++ + + ++
Sbjct: 296 GQPVTLAPEVEEVATFWVAMMTAASIHHLENPVFRKNFFDDFKVYCDKYGVTDAQGKKVA 355
Query: 55 ITDLSKCDFRKMHAYFVQKSEERKA--MSKEEKKKIKDENEAITKEYGVCTIDGHKEKIG 112
I L KC+F K++ Y+ ++ E+ K M+KEEK+ K + +A+ + CT DG KEK+G
Sbjct: 356 IKSLDKCNFDKINDYWTKRVEQNKTKNMTKEEKEAAKAKKDALEAPFTHCTWDGRKEKVG 415
Query: 113 NFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVT 172
NFR+EPP LFRGRGEHPK GK+K+RVQ E I IN K +K+P PP GH+WK V+HD + T
Sbjct: 416 NFRVEPPSLFRGRGEHPKTGKVKQRVQPEQITINIGKGAKIPEPPKGHQWKAVQHDQKAT 475
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA W EN+ KY+ML S +KG+ D++K+E AR+L K I+KIR++Y + KS+ M
Sbjct: 476 WLAMWQENINQNYKYVMLGADSAIKGQSDFKKFEKARELKKHIDKIRKDYTKELKSEIMA 535
Query: 233 IRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+YFIDKLALRAGNEKD E++ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 536 DRQRATAMYFIDKLALRAGNEKDTENEADTVGCCSLKYEHVTLEP-----PNKVTFDFLG 590
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVENKKGS-DDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSI Y V+ +VFKNL+LF + K + DDLFDRL TS LNKHL+ M+GLTAKVFR
Sbjct: 591 KDSIPYRETAVVDAQVFKNLKLFKKAPKTTGDDLFDRLTTSQLNKHLTSYMKGLTAKVFR 650
Query: 351 TYNASITLQQQLNEL-MDPDF--SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNL 407
TYNAS T+ LN+L DP + AEK+ YN NR VA+LCNH+R+V SH++ M L
Sbjct: 651 TYNASFTMSTLLNKLGSDPRSRGTVAEKVKLYNDCNREVAILCNHKRTVGASHEQQMAKL 710
Query: 408 KEKISNKRKQ 417
++I R Q
Sbjct: 711 GDRIKGLRYQ 720
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ KY+ML S +KG+ D++K+E AR+L K I+KIR++Y + KS+
Sbjct: 474 ATWLAMWQENINQNYKYVMLGADSAIKGQSDFKKFEKARELKKHIDKIRKDYTKELKSEI 533
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQL 587
M RQRA A+YFIDKLALRAGNEKD E++ADTVGCCSL+ EH+ L
Sbjct: 534 MADRQRATAMYFIDKLALRAGNEKDTENEADTVGCCSLKYEHVTL 578
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 436 AMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
A DK A+ + E++ LE+Q D++ NK +ALGTSK+NY+DPR++V +
Sbjct: 824 ATVDKFLKAVDKFDERIKTLELQAQDRDGNKEVALGTSKINYIDPRLTVVF 874
>gi|381143677|gb|AFF58499.1| topoisomerase I, partial [Bembidion dentellum]
Length = 271
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/255 (74%), Positives = 220/255 (86%), Gaps = 5/255 (1%)
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
YFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNE
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNE 60
Query: 301 VPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
VPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQ
Sbjct: 61 VPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQ 120
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKD 420
QL+EL + + + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM LKEKI KR+Q+ D
Sbjct: 121 QLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITD 180
Query: 421 AERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
A++ +KDA++ + + K + DKKK L RLK+QL+KLEV ETD++ENK+IALGTSKL
Sbjct: 181 AQKQVKDAQRDAKHGSVKEKVVYDKKKKTLERLKDQLMKLEVMETDRDENKSIALGTSKL 240
Query: 476 NYLDPRISVTWLASW 490
NYLDPRISV W +
Sbjct: 241 NYLDPRISVAWCKKY 255
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/41 (90%), Positives = 40/41 (97%)
Query: 554 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
YFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K
Sbjct: 1 YFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGK 41
>gi|381143727|gb|AFF58524.1| topoisomerase I, partial [Bembidion impotens]
Length = 270
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/253 (76%), Positives = 217/253 (85%), Gaps = 5/253 (1%)
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
ID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVP
Sbjct: 1 IDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVP 60
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL
Sbjct: 61 VEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQL 120
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA+
Sbjct: 121 DELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQ 180
Query: 423 RALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
+ +KDA+K + K + DKKK L RLKEQL+KLEVQETD++ENK IALGTSKLNY
Sbjct: 181 KQVKDAQKDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNY 240
Query: 478 LDPRISVTWLASW 490
LDPRISV W +
Sbjct: 241 LDPRISVAWCKKY 253
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/39 (89%), Positives = 38/39 (97%)
Query: 556 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
ID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K
Sbjct: 1 IDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGK 39
>gi|326481179|gb|EGE05189.1| topoisomerase I [Trichophyton equinum CBS 127.97]
Length = 892
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/421 (49%), Positives = 273/421 (64%), Gaps = 16/421 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEA-FNTNFMKDWRKSMTEKERA------ 53
++ G + L DAEE+A+ + M+ + + F NF D++ + + A
Sbjct: 285 LKYAGVPVTLHPDAEEVASHFGTMLNSTHNVENPIFQKNFFNDFQAIIKKTGGAKDPQGK 344
Query: 54 --VITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I + SKCDFR + ++ + E+KAMS EKK K E +A Y C DG K+K+
Sbjct: 345 PIQIKEFSKCDFRTIFEHYEKLRAEKKAMSAAEKKAAKAEKDAAEAPYMYCMWDGRKQKV 404
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G +K RV E I IN KD+ VP PP GH+WKEVRHD +
Sbjct: 405 GNFRVEPPALFRGRGEHPKTGTVKTRVMPEQITINIGKDAPVPAPPEGHRWKEVRHDQEG 464
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 465 TWLAMWQENVNGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIDRIRKDYKKGLKDELM 524
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 525 VNRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTLR-----PPNTVVFDFLG 579
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIRYY+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M GLTAKVFR
Sbjct: 580 KDSIRYYDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSSYMPGLTAKVFR 639
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M + EK+ YN ANR VA+LCNH+R+V H M L ++
Sbjct: 640 TYNASYTMATLLKK-MSATGTIPEKVKQYNDANREVAILCNHKRTVAAGHANQMEKLSDR 698
Query: 411 I 411
I
Sbjct: 699 I 699
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 465 TWLAMWQENVNGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIDRIRKDYKKGLKDELM 524
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 525 VNRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTL 567
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 32/42 (76%)
Query: 445 LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ ++ +++ + +Q DKE NK +ALGTSKLNY+DPR++V +
Sbjct: 818 ISKIDQRIENMLLQAEDKENNKEVALGTSKLNYIDPRLTVVF 859
>gi|302661284|ref|XP_003022311.1| hypothetical protein TRV_03522 [Trichophyton verrucosum HKI 0517]
gi|291186251|gb|EFE41693.1| hypothetical protein TRV_03522 [Trichophyton verrucosum HKI 0517]
Length = 919
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 211/421 (50%), Positives = 273/421 (64%), Gaps = 16/421 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEA-FNTNFMKDWRKSMTEKERA------ 53
++ G + L DAEE+A+ + M+ + + F NF D++ + + A
Sbjct: 312 LKYAGVPVTLRPDAEEVASHFGTMLNSTHNVENPIFQKNFFNDFQAIIKKTGGAKDPQGK 371
Query: 54 --VITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I + SKCDFR + ++ + E+KAMS EKK K E +A Y C DG K+K+
Sbjct: 372 PIQIKEFSKCDFRTIFEHYEKLRAEKKAMSAAEKKAAKAEKDAAEAPYMYCMWDGRKQKV 431
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFRIEPP LFRGRGEHPK G +K RV E I IN KD+ VP PP GH+WKEVRHD +
Sbjct: 432 GNFRIEPPALFRGRGEHPKTGTVKTRVMPEQITINIGKDAPVPAPPEGHRWKEVRHDQEG 491
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 492 TWLAMWQENVNGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIDRIRKDYKKGLKDELM 551
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 552 VNRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTLK-----PPNTVVFDFLG 606
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIRYY+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M GLTAKVFR
Sbjct: 607 KDSIRYYDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSSYMPGLTAKVFR 666
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M + EK+ YN ANR VA+LCNH+R+V H M L ++
Sbjct: 667 TYNASYTMATLLKK-MSATGTIPEKVKQYNDANREVAILCNHKRTVAAGHANQMEKLSDR 725
Query: 411 I 411
I
Sbjct: 726 I 726
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 492 TWLAMWQENVNGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIDRIRKDYKKGLKDELM 551
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 552 VNRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTL 594
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 32/42 (76%)
Query: 445 LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ ++ +++ + +Q DKE NK +ALGTSKLNY+DPR++V +
Sbjct: 845 ISKIDQRIENMLLQAEDKENNKEVALGTSKLNYIDPRLTVVF 886
>gi|326476352|gb|EGE00362.1| topoisomerase I [Trichophyton tonsurans CBS 112818]
Length = 878
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/421 (49%), Positives = 273/421 (64%), Gaps = 16/421 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEA-FNTNFMKDWRKSMTEKERA------ 53
++ G + L DAEE+A+ + M+ + + F NF D++ + + A
Sbjct: 285 LKYAGVPVTLHPDAEEVASHFGTMLNSTHNVENPIFQKNFFNDFQAIIKKTGGAKDPQGK 344
Query: 54 --VITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I + SKCDFR + ++ + E+KAMS EKK K E +A Y C DG K+K+
Sbjct: 345 PIQIKEFSKCDFRTIFEHYEKLRAEKKAMSAAEKKAAKAEKDAAEAPYMYCMWDGRKQKV 404
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G +K RV E I IN KD+ VP PP GH+WKEVRHD +
Sbjct: 405 GNFRVEPPALFRGRGEHPKTGTVKTRVMPEQITINIGKDAPVPAPPEGHRWKEVRHDQEG 464
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 465 TWLAMWQENVNGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIDRIRKDYKKGLKDELM 524
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 525 VNRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTLR-----PPNTVVFDFLG 579
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIRYY+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M GLTAKVFR
Sbjct: 580 KDSIRYYDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSSYMPGLTAKVFR 639
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M + EK+ YN ANR VA+LCNH+R+V H M L ++
Sbjct: 640 TYNASYTMATLLKK-MSATGTIPEKVKQYNDANREVAILCNHKRTVAAGHANQMEKLSDR 698
Query: 411 I 411
I
Sbjct: 699 I 699
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 465 TWLAMWQENVNGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIDRIRKDYKKGLKDELM 524
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 525 VNRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTL 567
>gi|224009518|ref|XP_002293717.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970389|gb|EED88726.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 536
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 215/491 (43%), Positives = 296/491 (60%), Gaps = 37/491 (7%)
Query: 31 TKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKD 90
T F NF D+R + + +I D KCDF + + ++ RKA++ EE+K KD
Sbjct: 8 TAPIFIKNFFTDFRTILGKNH--IIKDFKKCDFGPIQRHLNEQKLIRKAITDEERKVNKD 65
Query: 91 ENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKD 150
++G +DGH EK+GN+ +EPPG FRGRGEHPKMGKLK+RV+ E ++IN S+D
Sbjct: 66 SKNETLFKFGYALVDGHLEKVGNYNMEPPGAFRGRGEHPKMGKLKQRVEPEQVMINVSED 125
Query: 151 SKVP-PPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETAR 209
+ VP PGH W EVRHD V WL W EN+ QVKY+ L S KG+ D KY A
Sbjct: 126 APVPMCSVPGHAWGEVRHDPTVQWLCQWKENINNQVKYMQLAAQSSFKGKSDRSKYNKAA 185
Query: 210 KLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLR 268
KL +I+KIR +Y+ + SK + RQ A A++ ID+LALR G EKD D +ADTVGCCSLR
Sbjct: 186 KLCGNIDKIRTDYKKNLTSKSLETRQLATAMWVIDRLALRVGGEKDTDEEADTVGCCSLR 245
Query: 269 VEHIQLHEEKDGK-PYVVCFDFLGKDSIRYYNEV-----------PVEKRVFKNLQLFVE 316
VEH++ +G+ + +FLGKDS+ + + + ++V+KN QLF +
Sbjct: 246 VEHLKFDPNNEGEDSKEIELEFLGKDSMLFKQTIDFGSALYTENNGMGEQVYKNFQLFCK 305
Query: 317 NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPD----FSE 372
KK +DD+F L ++LN HL +MEGLTAKVFRTYNAS TLQ +L + +
Sbjct: 306 KKKPTDDVFSDLTPTILNAHLKSIMEGLTAKVFRTYNASKTLQDELTKTETAAGWKRLTA 365
Query: 373 AEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALK------ 426
AEK++ YN ANR VA+LCNHQRSV K+ + ++ NL +K+ Q K ++ LK
Sbjct: 366 AEKVVEYNNANREVAILCNHQRSVSKAQETTLENLGDKLQTLNDQKKALKKILKVIMENS 425
Query: 427 --------DAKKAG---ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
DA KAG E K ++ + E++ K+E+ K++NK ++LGTSKL
Sbjct: 426 DKKIPMKEDATKAGHLWEKKPTKEQVTKRITAWSEKIKKMELNIKHKDDNKEVSLGTSKL 485
Query: 476 NYLDPRISVTW 486
NY+DPRISV W
Sbjct: 486 NYMDPRISVAW 496
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 88/146 (60%), Gaps = 9/146 (6%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DP +V WL W EN+ QVKY+ L S KG+ D KY A KL +I+KIR +Y+ +
Sbjct: 144 DP--TVQWLCQWKENINNQVKYMQLAAQSSFKGKSDRSKYNKAAKLCGNIDKIRTDYKKN 201
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQL---HEEKDEK 594
SK + RQ A A++ ID+LALR G EKD D +ADTVGCCSLRVEH++ +E +D K
Sbjct: 202 LTSKSLETRQLATAMWVIDRLALRVGGEKDTDEEADTVGCCSLRVEHLKFDPNNEGEDSK 261
Query: 595 KI---YNKTQRAKFRWAIDMATADFV 617
+I + F+ ID +A +
Sbjct: 262 EIELEFLGKDSMLFKQTIDFGSALYT 287
>gi|327296986|ref|XP_003233187.1| topoisomerase I [Trichophyton rubrum CBS 118892]
gi|326464493|gb|EGD89946.1| topoisomerase I [Trichophyton rubrum CBS 118892]
Length = 892
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 210/421 (49%), Positives = 273/421 (64%), Gaps = 16/421 (3%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEA-FNTNFMKDWRKSMTEKERA------ 53
++ G + L DAEE+A+ + M+ + + F NF D++ + + A
Sbjct: 285 LKYAGVPVTLHPDAEEVASHFGTMLNSTHNVENPIFQKNFFNDFQAIIKKTGGAKDPQGK 344
Query: 54 --VITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I + SKCDFR + ++ + E+KAMS EKK K E +A Y C DG K+K+
Sbjct: 345 PIQIKEFSKCDFRTIFEHYEKLRAEKKAMSAAEKKAAKAEKDAAEAPYMYCMWDGRKQKV 404
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G +K RV E I IN KD+ VP PP GH+WKEVRHD +
Sbjct: 405 GNFRVEPPALFRGRGEHPKTGTVKTRVMPEQITINIGKDAPVPAPPEGHRWKEVRHDQEG 464
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 465 TWLAMWQENVNGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIDRIRKDYKKGLKDELM 524
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 525 VNRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTLK-----PPNTVVFDFLG 579
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIRYY+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS M GLTAKVFR
Sbjct: 580 KDSIRYYDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSSYMPGLTAKVFR 639
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M + EK+ YN ANR VA+LCNH+R+V H M L ++
Sbjct: 640 TYNASYTMATLLKK-MSATGTIPEKVKQYNDANREVAILCNHKRTVAAGHADQMEKLSDR 698
Query: 411 I 411
I
Sbjct: 699 I 699
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 465 TWLAMWQENVNGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIDRIRKDYKKGLKDELM 524
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 525 VNRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTL 567
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 32/42 (76%)
Query: 445 LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ ++ +++ + +Q DKE NK +ALGTSKLNY+DPR++V +
Sbjct: 818 ISKIDQRIENMLLQAEDKENNKEVALGTSKLNYIDPRLTVVF 859
>gi|323335697|gb|EGA76980.1| Top1p [Saccharomyces cerevisiae Vin13]
Length = 533
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 191/340 (56%), Positives = 242/340 (71%), Gaps = 7/340 (2%)
Query: 66 MHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGR 125
M YF + E++K ++ +EKK+I+ E E ++Y C +DG +E++GNF++EPP LFRGR
Sbjct: 1 MFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFRGR 60
Query: 126 GEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQV 185
G HPK GKLKRRV EDI++N SKD+ VPP P GHKW E+RHDN V WLA W EN+
Sbjct: 61 GAHPKTGKLKRRVNPEDIVLNLSKDAPVPPAPEGHKWGEIRHDNTVQWLAMWRENIFNSF 120
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDK 245
KY+ L +S LKG+ D++K+E AR+L I+ IR +Y + KSK M RQ+AVA+Y ID
Sbjct: 121 KYVRLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKXMLERQKAVAIYLIDV 180
Query: 246 LALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEK 305
ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y EV V+K
Sbjct: 181 FALRAGGEKSEDEADTVGCCSLRYEHVTLK-----PPNTVIFDFLGKDSIRFYQEVEVDK 235
Query: 306 RVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
+VFKNL +F K+ LFDRL+ S+LNK+L M GLTAKVFRTYNAS T+Q QL+
Sbjct: 236 QVFKNLTIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQDQLD- 294
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSM 404
L+ S AEKIL YN ANR VA+LCNHQR+V K H +++
Sbjct: 295 LIPNKGSVAEKILKYNAANRTVAILCNHQRTVTKGHAQTV 334
>gi|381143703|gb|AFF58512.1| topoisomerase I, partial [Bembidion frontale]
Length = 262
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/252 (76%), Positives = 217/252 (86%), Gaps = 5/252 (1%)
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPV
Sbjct: 1 DRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPV 60
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+
Sbjct: 61 EKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLD 120
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL + D + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++
Sbjct: 121 ELTNSDDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIEQKREQISDAQK 180
Query: 424 ALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
+KDA+K + + K + DKKK L RLKEQL+KLEVQETD++ENK IALGTSKLNYL
Sbjct: 181 QVKDAQKDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYL 240
Query: 479 DPRISVTWLASW 490
DPRISV W +
Sbjct: 241 DPRISVAWCKKY 252
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/38 (89%), Positives = 37/38 (97%)
Query: 557 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
D+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K
Sbjct: 1 DRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGK 38
>gi|189094077|gb|ACD75866.1| topoisomerase I [Macrogyrus oblongus]
Length = 263
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/260 (76%), Positives = 227/260 (87%), Gaps = 5/260 (1%)
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
R+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K YVV FDFLG
Sbjct: 1 RVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDDKEYVVVFDFLG 60
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRT 351
KDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+++NKHL+ELMEGLTAKVFRT
Sbjct: 61 KDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAIMNKHLNELMEGLTAKVFRT 120
Query: 352 YNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
YNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPK H K+M LKEKI
Sbjct: 121 YNASWTLQQQLDELTNDDDTVAEKILSYNRANRAVAILCNHQRSVPKGHQKTMEKLKEKI 180
Query: 412 SNKRKQVKDAERALKDAKKAGES-----KAMTDKKKTALGRLKEQLLKLEVQETDKEENK 466
KR+Q+ + +R +KDA++ + K + DKKK AL +LKEQ+++LEVQETDK+ENK
Sbjct: 181 EQKREQINEMQRQVKDAQRDARNGSVKEKMVFDKKKKALEKLKEQMIRLEVQETDKDENK 240
Query: 467 TIALGTSKLNYLDPRISVTW 486
+IALGTSKLNYLDPRISV W
Sbjct: 241 SIALGTSKLNYLDPRISVAW 260
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/50 (92%), Positives = 50/50 (100%)
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
R+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD+K
Sbjct: 1 RVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDDK 50
>gi|348690366|gb|EGZ30180.1| hypothetical protein PHYSODRAFT_358817 [Phytophthora sojae]
Length = 751
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 229/535 (42%), Positives = 314/535 (58%), Gaps = 62/535 (11%)
Query: 5 GKEMKLSQDAEEIATFYARMIEH-----EYTTKEAFNTNFMKDWRKSMTEKERAVITDLS 59
GK+++L+ EEIA+FYA + + T + FN NF D++K + ++ + +
Sbjct: 194 GKDIELTPSQEEIASFYAAIPKDGPQLGNPKTAKIFNKNFFTDFKKVLGKQHE--VKNFE 251
Query: 60 KCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPP 119
CDF K+ Y + EE+K+M+KEEK+ K++ E G +DGH EK+GNFRIEPP
Sbjct: 252 SCDFSKIATYLEKLREEKKSMTKEEKQPEKEKREMEVFTNGFAFVDGHLEKVGNFRIEPP 311
Query: 120 GLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVP-PPPPGHKWKEVRHDNQVTWLASWT 178
GLFRGRGEHPK G LK RV ED+ +N +VP PGH WK+V H + V+WLA W
Sbjct: 312 GLFRGRGEHPKTGTLKERVMPEDVTVNVGISDRVPICNVPGHAWKQVIHRDTVSWLAYWN 371
Query: 179 ENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
ENV G +KY+ SS KG+ D KYE AR+L I+KIR +Y ++K+M +QR+
Sbjct: 372 ENVMGGIKYVFFAASSSFKGKSDLAKYEKARRLKNCIDKIRRDYTKGLRAKDMFTKQRST 431
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A++ ID LALR GNEK ED+ADTVGCCSLRVEH+ ++E + FLGKDS+ Y
Sbjct: 432 AMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHMSFNDEN----CALTLSFLGKDSMPYN 487
Query: 299 NEV------PVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTY 352
N V V K V++NLQ F K ++ +F L+ + LNKHLS LM GL+AKVFRT+
Sbjct: 488 NTVELAQYGDVGKLVYQNLQKFCAKKDKNEKVFHELSVTELNKHLSSLMPGLSAKVFRTF 547
Query: 353 NASITLQQQL-----NELMDPD--FSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMG 405
NAS TL+++L NEL DP A K++ YN ANR VA+LCNHQR+ PKS D ++
Sbjct: 548 NASFTLEKELPGPSGNEL-DPQGKMEVAPKVVLYNDANRKVAILCNHQRTAPKSFDTTLD 606
Query: 406 NLKEKISNKRKQVKDA------------------------------ERALKDAKKAG--- 432
+ ++ + Q+KD E AL AKKA
Sbjct: 607 KMNAQLDQLKDQLKDLKQMQTLIAKGKSSSIKLKKEKKEKPSGDKDEDAL--AKKAQAHL 664
Query: 433 -ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ D+ + K+++ L ++ DK +NK +ALGTSKLNY+DPRI+V W
Sbjct: 665 FQRTPSVDQVAKKIENWKKKIKALSLRLQDKTDNKEVALGTSKLNYMDPRITVAW 719
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 78/110 (70%)
Query: 481 RISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWK 540
R +V+WLA W ENV G +KY+ SS KG+ D KYE AR+L I+KIR +Y +
Sbjct: 361 RDTVSWLAYWNENVMGGIKYVFFAASSSFKGKSDLAKYEKARRLKNCIDKIRRDYTKGLR 420
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
+K+M +QR+ A++ ID LALR GNEK ED+ADTVGCCSLRVEH+ ++E
Sbjct: 421 AKDMFTKQRSTAMWVIDVLALRVGNEKGEDEADTVGCCSLRVEHMSFNDE 470
>gi|365758450|gb|EHN00291.1| Top1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 455
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/340 (55%), Positives = 242/340 (71%), Gaps = 7/340 (2%)
Query: 66 MHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGR 125
M YF + +++K ++ +EKK+I+ E E ++Y C +DG KE++GNF++EPP LFRGR
Sbjct: 1 MFDYFQLQKDQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRKEQVGNFKVEPPDLFRGR 60
Query: 126 GEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQV 185
G HPK GKLKRRV EDI++N SKD+ VPP P GHKW E+RHDN V WLA W EN+
Sbjct: 61 GAHPKTGKLKRRVNPEDIVLNLSKDAAVPPAPEGHKWGEIRHDNTVQWLAMWRENIFNSF 120
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDK 245
KY+ L +S LKG+ D++K+E AR+L IN IR +Y + KSK M RQ+AVA+Y ID
Sbjct: 121 KYVRLAANSSLKGQSDYKKFEKARQLKSYINAIRRDYTRNLKSKVMLERQKAVAIYLIDV 180
Query: 246 LALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEK 305
ALRAG EK +D+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y EV V+K
Sbjct: 181 FALRAGGEKSDDEADTVGCCSLRYEHVTLKP-----PNTVIFDFLGKDSIRFYQEVEVDK 235
Query: 306 RVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
+VFKNL +F K+ LFDRL+ S+LNK+L M GLTAKVFRTYNAS T+Q QL+
Sbjct: 236 QVFKNLTIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQDQLD- 294
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSM 404
L+ S AEK+L YN ANR VA+LCNHQR+V K H +++
Sbjct: 295 LIPNSGSVAEKLLKYNAANRTVAILCNHQRTVTKGHAQTV 334
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/105 (55%), Positives = 74/105 (70%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA W EN+ KY+ L +S LKG+ D++K+E AR+L IN IR +Y + KSK
Sbjct: 105 TVQWLAMWRENIFNSFKYVRLAANSSLKGQSDYKKFEKARQLKSYINAIRRDYTRNLKSK 164
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M RQ+AVA+Y ID ALRAG EK +D+ADTVGCCSLR EH+ L
Sbjct: 165 VMLERQKAVAIYLIDVFALRAGGEKSDDEADTVGCCSLRYEHVTL 209
>gi|432864217|ref|XP_004070231.1| PREDICTED: DNA topoisomerase 1-like [Oryzias latipes]
Length = 597
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/307 (64%), Positives = 239/307 (77%), Gaps = 9/307 (2%)
Query: 189 MLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLAL 248
M +++GEKDW+KYE ARKL ++ IR Y D KS+EM RQRAVALYFIDKLAL
Sbjct: 258 MTKEEKQIQGEKDWEKYEIARKLKSCVDDIRNTYLGDLKSREMVTRQRAVALYFIDKLAL 317
Query: 249 RAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRV 307
RAGNEK+E + ADTVGCCSLRVEHI LHE+ DG VV FDFLGKDSIRYYN+VPV +V
Sbjct: 318 RAGNEKEEGETADTVGCCSLRVEHITLHEQLDGNKCVVEFDFLGKDSIRYYNKVPVISKV 377
Query: 308 FKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMD 367
FK+L+ F++NK+ D+LFDRLNTS+LNKHLS LM GLTAKVFRTYNASITLQQQL EL +
Sbjct: 378 FKSLKRFMDNKEPGDELFDRLNTSLLNKHLSSLMPGLTAKVFRTYNASITLQQQLKELSN 437
Query: 368 PDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKD 427
+ AEK+L+YNRANRAVA+LCNHQR+ PK+ ++SM NL+ KI +++Q+ A+ LK
Sbjct: 438 KSDNVAEKLLSYNRANRAVAILCNHQRAPPKTFEQSMANLQAKIDARKEQLALAKSELKQ 497
Query: 428 AKKAGESK--------AMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
AKK + K A+ ++KK A+ R +E LLK+EVQ TD+EENK IALGTSKLNYLD
Sbjct: 498 AKKEAKDKGNSDIKLQALVERKKAAVKRCEEHLLKMEVQATDREENKQIALGTSKLNYLD 557
Query: 480 PRISVTW 486
PRISV W
Sbjct: 558 PRISVAW 564
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/92 (66%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Query: 502 MLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLAL 561
M +++GEKDW+KYE ARKL ++ IR Y D KS+EM RQRAVALYFIDKLAL
Sbjct: 258 MTKEEKQIQGEKDWEKYEIARKLKSCVDDIRNTYLGDLKSREMVTRQRAVALYFIDKLAL 317
Query: 562 RAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
RAGNEK+E + ADTVGCCSLRVEHI LHE+ D
Sbjct: 318 RAGNEKEEGETADTVGCCSLRVEHITLHEQLD 349
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 77/115 (66%), Gaps = 5/115 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK+MKLS AEE+A F+A+M++HEYTTK+ F NF KDWRK MT +ER+VI DL+KCDF
Sbjct: 183 GKKMKLSVAAEEVALFFAQMLDHEYTTKKVFRENFFKDWRKEMTPEERSVIQDLNKCDFG 242
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENE----AITKEYGVCTIDGHKEKIGNFR 115
++HA K E RK M+KEE K+I+ E + I ++ C D +G+ +
Sbjct: 243 EIHAMHKTKVEARKNMTKEE-KQIQGEKDWEKYEIARKLKSCVDDIRNTYLGDLK 296
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDM DF F
Sbjct: 574 KIYNKTQREKFAWAIDMTEDDFEF 597
>gi|302916741|ref|XP_003052181.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733120|gb|EEU46468.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 919
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/430 (49%), Positives = 280/430 (65%), Gaps = 22/430 (5%)
Query: 5 GKEMKLSQDAEEIATFYARMI---EHEYTTKEAFNTNFMKDWRK-------SMTEKERAV 54
GK + L+ + EE+ATF+ M+ + F NF +D+++ + + ++
Sbjct: 306 GKPVNLAPEVEEVATFWVAMMTPASSHHMENPVFRKNFFEDFQEYCKKYGVTDADGKKVQ 365
Query: 55 ITDLSKCDFRKMHAYFVQKSEERKA--MSKEEKKKIKDENEAITKEYGVCTIDGHKEKIG 112
I L KCDF K+ Y++ K+E+ K M+KEEK+ K + EA+ + C DG K+K+G
Sbjct: 366 IKSLDKCDFTKLADYWLAKAEQNKTKNMTKEEKEAAKAKKEALEAPFTHCMWDGRKQKVG 425
Query: 113 NFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVT 172
NFR+EPP LFRGRGEHPK GK+K RV E I IN K +K+P PP GH+WK V+HD + T
Sbjct: 426 NFRVEPPSLFRGRGEHPKTGKVKNRVTPEQITINIGKGAKIPDPPKGHQWKAVQHDQKAT 485
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA W EN+ KY+ML +S +KG+ D++K+E AR+L K I++IR++Y + KS+ M
Sbjct: 486 WLAMWQENINNNYKYVMLGAASDIKGQSDFKKFEKARELKKHIDRIRKDYTKELKSEVMA 545
Query: 233 IRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+Y ID+LALRAGNEKD E++ADTVGCCSL+ EHI L P V FDFLG
Sbjct: 546 DRQRATAMYLIDRLALRAGNEKDTENEADTVGCCSLKYEHITLEP-----PNKVTFDFLG 600
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVENKKG-SDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSI Y VE +VFKNL+LF + K DDLFDRL T+ LNKHL+ M GLTAKVFR
Sbjct: 601 KDSIPYRETAHVEPQVFKNLKLFKKAPKTKGDDLFDRLTTTQLNKHLTNYMPGLTAKVFR 660
Query: 351 TYNASITLQQQLNELM-DPDF--SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNL 407
TYNAS T+ + L L DP S AEK+ YN NR VA+LCNH+R+V H++ M L
Sbjct: 661 TYNASFTMSELLKGLSKDPRSRGSVAEKVKLYNDCNREVAILCNHKRTVGAGHEQQMQKL 720
Query: 408 KEKISNKRKQ 417
++I R Q
Sbjct: 721 GDRIKGLRYQ 730
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ KY+ML +S +KG+ D++K+E AR+L K I++IR++Y + KS+
Sbjct: 484 ATWLAMWQENINNNYKYVMLGAASDIKGQSDFKKFEKARELKKHIDRIRKDYTKELKSEV 543
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQL 587
M RQRA A+Y ID+LALRAGNEKD E++ADTVGCCSL+ EHI L
Sbjct: 544 MADRQRATAMYLIDRLALRAGNEKDTENEADTVGCCSLKYEHITL 588
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
DK A+ +L E++ LE Q D++ NK +ALGTSK+NY+DPR++V +
Sbjct: 836 VDKFIKAIEKLDERVKVLETQAEDRDGNKEVALGTSKINYIDPRLTVVF 884
>gi|426236003|ref|XP_004011964.1| PREDICTED: LOW QUALITY PROTEIN: DNA topoisomerase I, mitochondrial
[Ovis aries]
Length = 601
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 216/472 (45%), Positives = 287/472 (60%), Gaps = 39/472 (8%)
Query: 15 EEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKS 74
EE A FY +M++HEYTTKE F N DWRK MT +ER V+ L +CDF + H + ++
Sbjct: 136 EEAAAFYGKMLQHEYTTKEVFPDNSFSDWRKEMTAEERKVVKHLDRCDFTETHRHSADRT 195
Query: 75 EERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKL 134
+KA+S ++K+K+E E + +E+G C +DGH+EKIG+F EP G G+HPKM +L
Sbjct: 196 ASQKALSGGRRQKLKEEEEKLQQEFGYCILDGHREKIGSFETEPLVSLXGWGDHPKMERL 255
Query: 135 KRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSS 194
KRRV ED+++NCS+DS VP PP G +WKEV V LA+WTENVQ +KY+ LNP S
Sbjct: 256 KRRVLPEDVVVNCSRDSAVPEPPAGPRWKEVGCVRTVMRLAAWTENVQNLIKYVTLNPGS 315
Query: 195 KLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEK 254
KLKGE+DW KYE A+ L + +IR Y+ S EMR RQ AVALYFIDK
Sbjct: 316 KLKGERDWGKYEVAQHLKGVVGEIRSXYRTAXTSLEMRARQYAVALYFIDKGT--CAMPY 373
Query: 255 DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLF 314
E+ GCCSL VEH QLH E G P +V
Sbjct: 374 GEEGGGHGGCCSLHVEHYQLHPEASGSPDLV----------------------------- 404
Query: 315 VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAE 374
N G ++R T+ LN+HL + +GLTA+V RTYNASI LQ QL L + S A
Sbjct: 405 --NGSGG---WNR-ATASLNRHLQDPRDGLTARVLRTYNASIMLQGQLQALPXAEDSIAA 458
Query: 375 KILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGES 434
++L+YN ANR A LC+HQR+ PK+ DKS+ L+ +I K +QV +A+ L++A S
Sbjct: 459 ELLSYNEANRXCAFLCSHQRTAPKTFDKSVQMLQSQIEAKEQQVAEAKTELQEAWADHTS 518
Query: 435 KAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ + +L+EQLL++ + DKEE+K +ALGTSKLNYLDPR+ VTW
Sbjct: 519 QGDSRSPLFLEKKLEEQLLRVSM--XDKEESKQVALGTSKLNYLDPRVGVTW 568
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V LA+WTENVQ +KY+ LNP SKLKGE+DW KYE A+ L + +IR Y+ S
Sbjct: 291 TVMRLAAWTENVQNLIKYVTLNPGSKLKGERDWGKYEVAQHLKGVVGEIRSXYRTAXTSL 350
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMR RQ AVALYFIDK E+ GCCSL VEH QLH E
Sbjct: 351 EMRARQYAVALYFIDKGT--CAMPYGEEGGGHGGCCSLHVEHYQLHPE 396
>gi|389611807|dbj|BAM19469.1| topoisomerase, partial [Papilio xuthus]
Length = 279
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/246 (78%), Positives = 211/246 (85%), Gaps = 5/246 (2%)
Query: 246 LALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEK 305
LALRAGNEKD+DQADTVGCCSLRVEHIQLH+EKDGK YVV FDFLGKDSIRYYNEVPVEK
Sbjct: 1 LALRAGNEKDDDQADTVGCCSLRVEHIQLHKEKDGKEYVVVFDFLGKDSIRYYNEVPVEK 60
Query: 306 RVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNEL 365
RVFKNL+LF+ENK+ SDDLFDRLNT LN+HL +LM GLTAKVFRTYNASITLQ+QL+EL
Sbjct: 61 RVFKNLELFMENKRDSDDLFDRLNTQTLNEHLKDLMPGLTAKVFRTYNASITLQRQLDEL 120
Query: 366 MDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERAL 425
DP+ S EKILAYNRANRAVAVLCNHQR+VPK H KSM LKEKI KR Q+ +AE L
Sbjct: 121 TDPNASIPEKILAYNRANRAVAVLCNHQRAVPKGHSKSMEALKEKIQAKRDQIDEAEEDL 180
Query: 426 KDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDP 480
++A KA + K DKKKTAL RLKEQL KLE+QETD++ENKTIALGTSKLNYLDP
Sbjct: 181 REATKAAKRGSVKEKIAADKKKTALERLKEQLKKLELQETDRDENKTIALGTSKLNYLDP 240
Query: 481 RISVTW 486
RISV W
Sbjct: 241 RISVAW 246
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/36 (91%), Positives = 35/36 (97%)
Query: 559 LALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
LALRAGNEKD+DQADTVGCCSLRVEHIQLH+EKD K
Sbjct: 1 LALRAGNEKDDDQADTVGCCSLRVEHIQLHKEKDGK 36
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 23/24 (95%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAIDMAT+++VF
Sbjct: 256 KIYNKTQRDKFRWAIDMATSEYVF 279
>gi|67623925|ref|XP_668245.1| DNA topoisomerase I [Cryptosporidium hominis TU502]
gi|54659457|gb|EAL38033.1| DNA topoisomerase I [Cryptosporidium hominis]
Length = 641
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 221/551 (40%), Positives = 317/551 (57%), Gaps = 72/551 (13%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVIT-DLS 59
+E G+ ++L +AEEIA++++ M + E+ KE F+ N K + S+ ++ +
Sbjct: 66 LEYNGERIQLPPEAEEIASYWSVMKDTEWAQKEKFSNNVRKAFMNSIPVGDKLHNNLEWE 125
Query: 60 KCDFRKMHAYFVQKSEERKAMSKEEK---KKIKDENEAITKEYGVCTIDGHKEKIGNFRI 116
KC+F + YF + E +K +SKEEK KK + + E+ + +D KEK+GNFRI
Sbjct: 126 KCNFDIIKQYFEDEKEAKKNLSKEEKELQKKCRGDQES---PFVYALVDWIKEKVGNFRI 182
Query: 117 EPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP---PGHKWKEVRHDNQVTW 173
EPPGLF+GRGEHPK G LKRR+ ED+ +N ++D+ VP P GH WK++ HDN VTW
Sbjct: 183 EPPGLFKGRGEHPKSGMLKRRIFPEDVTLNIAEDAPVPKVPNSMKGHAWKDIFHDNTVTW 242
Query: 174 LASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRI 233
LA + +++ Q KYI L+ SS KG D+ KYE ARKL I+ IR +Y+ S ++
Sbjct: 243 LAYYRDSINNQFKYIFLSASSGFKGMSDYNKYEKARKLKDHIDAIRSDYRKKMTSGDITQ 302
Query: 234 RQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGK 292
RQ A Y ID LALR G EKD D+ ADTVGCCSLRVEHI ++++ + DFLGK
Sbjct: 303 RQLGTATYLIDFLALRVGGEKDTDEEADTVGCCSLRVEHITFNQQEKS----ITLDFLGK 358
Query: 293 DSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTY 352
DSIRYYN V ++ F NL +F NK +++FD++N S LN++L +M L+AKVFRT+
Sbjct: 359 DSIRYYNTVVIDPSAFNNLTIFCRNKDKMENVFDQINMSSLNQYLKSIMPELSAKVFRTF 418
Query: 353 NASITLQQQLNELM------------------------------DPDFSEAEKIL-AYNR 381
NASITL+++L+++ + D + IL YN
Sbjct: 419 NASITLERELSKISAKSAVKSEKKTKMELESCLKDELNLSNFNNEVDITNVNDILRFYND 478
Query: 382 ANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKK 441
ANR VA+LCNHQRSVPK H+ SM + ++ + +K E LK KK +S M D
Sbjct: 479 ANREVAILCNHQRSVPKQHESSMEKMIKQQQELEEDLKICEAFLKILKKNNKSVTMNDLP 538
Query: 442 KTA--------------------------LGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
K + + +K ++ L ++ K++NKT+AL TSK+
Sbjct: 539 KLSTEVSFNGKQRKYPINLNSSLDVVQKKIDSIKSKISNLYLKIKIKDDNKTVALNTSKI 598
Query: 476 NYLDPRISVTW 486
NY+DPRISV +
Sbjct: 599 NYMDPRISVAF 609
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA + +++ Q KYI L+ SS KG D+ KYE ARKL I+ IR +Y+ S
Sbjct: 239 TVTWLAYYRDSINNQFKYIFLSASSGFKGMSDYNKYEKARKLKDHIDAIRSDYRKKMTSG 298
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEE 590
++ RQ A Y ID LALR G EKD D +ADTVGCCSLRVEHI +++
Sbjct: 299 DITQRQLGTATYLIDFLALRVGGEKDTDEEADTVGCCSLRVEHITFNQQ 347
>gi|66363066|ref|XP_628499.1| eukaryotic DNA topoisomerase I [Cryptosporidium parvum Iowa II]
gi|46229815|gb|EAK90633.1| eukaryotic DNA topoisomerase I [Cryptosporidium parvum Iowa II]
Length = 653
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 220/551 (39%), Positives = 319/551 (57%), Gaps = 72/551 (13%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVIT-DLS 59
+E G+ ++L +AEEIA++++ M + E+ KE F+ N K + S+ ++ +
Sbjct: 78 LEYNGERIQLPPEAEEIASYWSVMKDTEWAQKEKFSNNVRKAFMNSIPVGDKLHNNLEWE 137
Query: 60 KCDFRKMHAYFVQKSEERKAMSKEEK---KKIKDENEAITKEYGVCTIDGHKEKIGNFRI 116
KC+F + YF + E +K +SKEEK KK + + E+ + +D KEK+GNFRI
Sbjct: 138 KCNFDIIKQYFEDEKEAKKNLSKEEKELQKKCRGDQES---PFVYALVDWIKEKVGNFRI 194
Query: 117 EPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP---PGHKWKEVRHDNQVTW 173
EPPGLF+GRGEHPK G LKRR+ ED+ +N ++D+ VP P GH WK++ HDN VTW
Sbjct: 195 EPPGLFKGRGEHPKSGMLKRRIFPEDVTLNIAEDAPVPKVPNSMKGHAWKDIFHDNTVTW 254
Query: 174 LASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRI 233
LA + +++ Q KYI L+ SS KG D+ KYE ARKL I+ IR++Y+ S ++
Sbjct: 255 LAYYRDSINNQFKYIFLSASSGFKGMSDYNKYEKARKLKDHIDAIRDDYRKKMTSGDITQ 314
Query: 234 RQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGK 292
RQ A Y ID LALR G EKD D+ ADTVGCCSLRVEHI ++++ + DFLGK
Sbjct: 315 RQLGTATYLIDFLALRVGGEKDTDEEADTVGCCSLRVEHITFNQQEKS----ITLDFLGK 370
Query: 293 DSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTY 352
DSIRYYN V ++ F NL +F NK +++FD++N S LN++L +M L+AKVFRT+
Sbjct: 371 DSIRYYNTVVIDPSAFNNLTIFCRNKDKMENVFDQINMSSLNQYLKSIMPELSAKVFRTF 430
Query: 353 NASITLQQQLNELM------------------------------DPDFSEAEKIL-AYNR 381
NASITL+++L+++ + D + IL YN
Sbjct: 431 NASITLERELSKISAKSAVKSEKRTKMELESYLKDELNLSNFNNEVDITNVNDILRFYND 490
Query: 382 ANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKK 441
ANR VA+LCNHQRSVPK H+ SM + ++ + +K E LK KK +S ++D
Sbjct: 491 ANREVAILCNHQRSVPKQHESSMEKMIKQQQELEEDLKICEAFLKILKKNNKSVTISDLP 550
Query: 442 KTA--------------------------LGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
K + + +K ++ L ++ K++NKT+AL TSK+
Sbjct: 551 KLSTEVSFNGKQRKYPINLNSSLDVVQKKIDSIKSKISNLYLKIKIKDDNKTVALNTSKI 610
Query: 476 NYLDPRISVTW 486
NY+DPRISV +
Sbjct: 611 NYMDPRISVAF 621
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 73/109 (66%), Gaps = 1/109 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA + +++ Q KYI L+ SS KG D+ KYE ARKL I+ IR++Y+ S
Sbjct: 251 TVTWLAYYRDSINNQFKYIFLSASSGFKGMSDYNKYEKARKLKDHIDAIRDDYRKKMTSG 310
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEE 590
++ RQ A Y ID LALR G EKD D +ADTVGCCSLRVEHI +++
Sbjct: 311 DITQRQLGTATYLIDFLALRVGGEKDTDEEADTVGCCSLRVEHITFNQQ 359
>gi|381143593|gb|AFF58457.1| topoisomerase I, partial [Asaphidion rossii]
Length = 260
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 195/257 (75%), Positives = 221/257 (85%), Gaps = 5/257 (1%)
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
ALYFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KDGK YVV FDFLGKDSIRYY
Sbjct: 1 ALYFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYY 60
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
NEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TL
Sbjct: 61 NEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTL 120
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
QQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM LKEKI KR+Q+
Sbjct: 121 QQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEKIDQKREQI 180
Query: 419 KDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTS 473
DA++ LKDA++ + + K + DKKK L +LKEQL+KLEV ETD++ENK IALGTS
Sbjct: 181 TDAQKQLKDAQRDAKHGSVKEKVVYDKKKKMLEKLKEQLVKLEVLETDRDENKAIALGTS 240
Query: 474 KLNYLDPRISVTWLASW 490
KLNYLDPRISV W +
Sbjct: 241 KLNYLDPRISVAWCKKY 257
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/43 (90%), Positives = 42/43 (97%)
Query: 552 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK 594
ALYFID+LALRAGNEKDEDQADTVGCCSLRVEHI+LHE+KD K
Sbjct: 1 ALYFIDRLALRAGNEKDEDQADTVGCCSLRVEHIELHEQKDGK 43
>gi|118384307|ref|XP_001025304.1| Eukaryotic DNA topoisomerase I, catalytic core family protein
[Tetrahymena thermophila]
gi|89307071|gb|EAS05059.1| Eukaryotic DNA topoisomerase I, catalytic core family protein
[Tetrahymena thermophila SB210]
Length = 713
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 224/532 (42%), Positives = 320/532 (60%), Gaps = 53/532 (9%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ EE+AT++++ + ++ K + NF K + + + + D K DF
Sbjct: 161 GKPIDLNLLQEEMATYWSQTLGTDWEHKPKYRENFSKQFLDTFGKDKGKY--DFDKFDFT 218
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+ + ++ E RK SKEEK + K + E ++ Y +DG +EK+G F IEPP LF+G
Sbjct: 219 PIKIHLEEQKEIRKNRSKEEKNQEKQKKERLSDYYAGAILDGFREKVGQFMIEPPTLFKG 278
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPP------------------GHKWKEV 165
RGEHPKMG +K R+Q E ++IN SKD+ VP P GH W E+
Sbjct: 279 RGEHPKMGMMKGRIQPEAVVINISKDAPVPKCSVPDCIHICRQIFNEFPKKQLGHGWSEI 338
Query: 166 RHDNQVTWLASWTEN-VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQA 224
H VTWLAS+ ++ V+ Q KYI L+ SKLK E D +KYE AR+L I +IRENY+
Sbjct: 339 VHKQDVTWLASYKDDSVKKQHKYIFLSAESKLKAENDKKKYEKARRLKNLIGQIRENYER 398
Query: 225 DWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYV 284
+S + RQ A Y IDKLALR GNEK E++ADTVGCCSLRVEHIQ+ E+
Sbjct: 399 KLRSSDPVDRQLGTATYLIDKLALRVGNEKSEEEADTVGCCSLRVEHIQVIEDTQ----- 453
Query: 285 VCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGL 344
+ FDFLGKDS+RY N V V + V+KN+Q F++NKK DDLFDR++ S LN++L MEGL
Sbjct: 454 IGFDFLGKDSMRYQNTVKVTEIVWKNMQSFIKNKKPGDDLFDRIDASSLNEYLKSQMEGL 513
Query: 345 TAKVFRTYNASITLQQQLNELMDPDFSEA---EKILAYNRANRAVAVLCNHQRSVPKSHD 401
TAKVFRTYNAS TLQ++L++ + + +K+ Y+ ANR VA+LCNHQ++V K+ D
Sbjct: 514 TAKVFRTYNASHTLQKELDKADEEGLDKMDLKDKLNFYDEANRNVAILCNHQKTVGKNFD 573
Query: 402 KSMGNLKEKISNKRKQVKDAERALKDAKKAG----ESKAMTDKK---------------- 441
+G ++++I+ + K+ L KK G E + + ++K
Sbjct: 574 VMVGKMEQRINVYKDYEKELHTHLNKCKKNGVNAYEKEVILEEKDDGKHKMFVKKFPGTK 633
Query: 442 ---KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
+ A+ ++K+++ + + ++ KE+NK IALGTSK NY DPRISV W W
Sbjct: 634 EKIQEAIEKIKKKIDEEQNKKQSKEKNKEIALGTSKTNYNDPRISVVWCKKW 685
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 484 VTWLASWTEN-VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
VTWLAS+ ++ V+ Q KYI L+ SKLK E D +KYE AR+L I +IRENY+ +S
Sbjct: 344 VTWLASYKDDSVKKQHKYIFLSAESKLKAENDKKKYEKARRLKNLIGQIRENYERKLRSS 403
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
+ RQ A Y IDKLALR GNEK E++ADTVGCCSLRVEHIQ+ E+
Sbjct: 404 DPVDRQLGTATYLIDKLALRVGNEKSEEEADTVGCCSLRVEHIQVIED 451
>gi|241756697|ref|XP_002412547.1| DNA topoisomerase I, putative [Ixodes scapularis]
gi|215506158|gb|EEC15652.1| DNA topoisomerase I, putative [Ixodes scapularis]
Length = 499
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 172/241 (71%), Positives = 204/241 (84%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRK 65
K +KLS AEE+A FY RM++H+YT+KEAFN NF KDWRK+MT KE +ITDLSKC+F++
Sbjct: 259 KVVKLSPAAEEVAGFYGRMLDHDYTSKEAFNKNFFKDWRKTMTPKEAELITDLSKCNFKE 318
Query: 66 MHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGR 125
+ Y+ QKSEERKAMSKEEK+ IK +NE + +EYG C IDGH++KIGNF+IEPPGLFRGR
Sbjct: 319 IDVYYKQKSEERKAMSKEEKQAIKAQNEKLLEEYGFCIIDGHRQKIGNFKIEPPGLFRGR 378
Query: 126 GEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQV 185
GEHPKMG LKRRV ED+IIN K++K+PPPP GH+WKEVRHDN V+WL+SWTEN+ GQ
Sbjct: 379 GEHPKMGMLKRRVMPEDVIINIGKEAKIPPPPEGHRWKEVRHDNTVSWLSSWTENILGQT 438
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDK 245
KYIMLNPSSKLKGEKD QKYE ARKL + IRE+Y DWKSKEMRIRQR+VALYFIDK
Sbjct: 439 KYIMLNPSSKLKGEKDMQKYEMARKLKSKVGVIREDYMRDWKSKEMRIRQRSVALYFIDK 498
Query: 246 L 246
+
Sbjct: 499 V 499
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/77 (75%), Positives = 66/77 (85%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V+WL+SWTEN+ GQ KYIMLNPSSKLKGEKD QKYE ARKL + IRE+Y DWKSK
Sbjct: 423 TVSWLSSWTENILGQTKYIMLNPSSKLKGEKDMQKYEMARKLKSKVGVIREDYMRDWKSK 482
Query: 543 EMRIRQRAVALYFIDKL 559
EMRIRQR+VALYFIDK+
Sbjct: 483 EMRIRQRSVALYFIDKV 499
>gi|428170450|gb|EKX39375.1| DNA topoisomerase I [Guillardia theta CCMP2712]
Length = 701
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 224/523 (42%), Positives = 316/523 (60%), Gaps = 50/523 (9%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M+ G+ + L+ + E IAT YA M +Y K+ F NF K++ + + + I DL
Sbjct: 158 MKYDGQIISLTPEQEAIATMYAAMSRTDYAGKDVFKKNFWKEFSEKLGKNH--AIKDLEN 215
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF+ + + + E++KA++KEEK KIK E Y +D H EK GNFR+EP G
Sbjct: 216 CDFQPIVDHLDAEREKKKALTKEEKLKIKQAKEKTEAPYVTVVLDSHLEKNGNFRVEPAG 275
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPP--PPPGHKWKEVRHDNQVTWLASWT 178
LFRGRGEHPKMG++K +Q EDI +NCS+D+ PP PGH W+ + H ++ TWLA +
Sbjct: 276 LFRGRGEHPKMGQVKGVIQPEDITMNCSEDA-CPPRCSLPGHAWQSLVHKDEQTWLAFYK 334
Query: 179 ENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + G+ KY+ L+ S LKG+ D +K+E AR+L K + +IR+ KS + ++Q
Sbjct: 335 DTINGEFKYVFLSAGSSLKGQSDREKFEKARELKKHVARIRQRITQGLKSSGLEMQQN-T 393
Query: 239 ALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
AL+ ID LA+RAGNEKD ++ADTVGCCSLRVEHI L +++G + F+FLGKDSI Y
Sbjct: 394 ALWLIDNLAIRAGNEKDTNEEADTVGCCSLRVEHITLGTDEEGP--TIYFNFLGKDSIEY 451
Query: 298 YNEVPVE---------------------------KRVFKNLQLFVEN-KKGSDDLFDRLN 329
N V + +RV +N++ N KK SDD+FD+LN
Sbjct: 452 KNLVKLRPKDEEKAKEGEENPCVSFVREGEEKNFRRVVENMRSLTSNSKKPSDDVFDQLN 511
Query: 330 TSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMD-PDFS-----EAEKILAYNRAN 383
TS LN +L +LM GLTAKVFRTYNAS TL Q+L +L D P+ S +A ++ YN AN
Sbjct: 512 TSSLNTYLKDLMPGLTAKVFRTYNASFTLDQELYKLEDHPEKSSFLRNDATQLKFYNDAN 571
Query: 384 RAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKT 443
VA+LCNH R+V K+ D + + EKI +++ D LK KK+ ++K KK
Sbjct: 572 YQVAILCNHSRAVSKTFDSQVEKMDEKIKGLHEELAD----LKKKKKSADNKEQMKKK-- 625
Query: 444 ALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ L+E++ K E Q+ K + +AL TSK+NYLDPRI+V W
Sbjct: 626 -IANLEERISKQETQKQIKLKLAGVALSTSKVNYLDPRITVAW 667
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 77/114 (67%), Gaps = 2/114 (1%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA + + + G+ KY+ L+ S LKG+ D +K+E AR+L K + +IR+ KS +
Sbjct: 328 TWLAFYKDTINGEFKYVFLSAGSSLKGQSDREKFEKARELKKHVARIRQRITQGLKSSGL 387
Query: 545 RIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDEKKIY 597
++Q AL+ ID LA+RAGNEKD ++ADTVGCCSLRVEHI L +++ IY
Sbjct: 388 EMQQN-TALWLIDNLAIRAGNEKDTNEEADTVGCCSLRVEHITLGTDEEGPTIY 440
>gi|209876474|ref|XP_002139679.1| DNA topoisomerase I [Cryptosporidium muris RN66]
gi|209555285|gb|EEA05330.1| DNA topoisomerase I, putative [Cryptosporidium muris RN66]
Length = 660
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 228/559 (40%), Positives = 328/559 (58%), Gaps = 85/559 (15%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLS--KCD 62
GKE++L ++EEIAT++A++++ E+++KE F N K+ S K + + + KCD
Sbjct: 78 GKEIELPNESEEIATYWAQILDTEWSSKERFVKN-AKEAFISSIPKGHILYKNCNWDKCD 136
Query: 63 FRKMHAYFVQKSEERKAMSKEEK---KKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPP 119
F + +F ++ E +K M+KE+K K+IK+E+E+ Y +D KEK+GNFRIEPP
Sbjct: 137 FSLIKEHFDEEKERKKNMNKEQKEQQKRIKNESES---PYIYALVDWIKEKVGNFRIEPP 193
Query: 120 GLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVP---PPPPGHKWKEVRHDNQVTWLAS 176
GLFRGRGEHPK G LK+R+ +E++ +N ++D+ VP GH WK+V HD+ VTWLA
Sbjct: 194 GLFRGRGEHPKSGMLKKRIFSEEVTLNVAEDAPVPKVDSSIIGHAWKDVFHDSNVTWLAY 253
Query: 177 WTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQR 236
+ +++ Q KYI L+ SS KG D+ KYE ARKL I+ IR++Y KS ++ RQ
Sbjct: 254 YKDSINNQFKYIFLSASSGFKGMSDYNKYEKARKLKNFIHAIRDDYNKKMKSNDIIHRQL 313
Query: 237 AVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSI 295
A Y ID LALR G EKD E++ADTVGCCSLRVEHI +E+ + DFLGKDSI
Sbjct: 314 GTATYLIDFLALRVGGEKDIEEEADTVGCCSLRVEHISFNEDSKS----ITLDFLGKDSI 369
Query: 296 RYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNAS 355
RY+N V ++ F NL LF +NK+ +++FD++N S LN++L +M L+AKVFRT+NAS
Sbjct: 370 RYFNTVCIDAAAFYNLMLFCKNKEKHENVFDQINMSSLNQYLKSIMPELSAKVFRTFNAS 429
Query: 356 ITLQQQLNEL--------------MD--------------------------PDFSEAEK 375
ITL+++L +L +D D +
Sbjct: 430 ITLERELLKLRSLTNFSNQTTKSNLDLVKNEFGIKSDDIKQDDLLRSNLNNIVDITNVND 489
Query: 376 IL-AYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-AGE 433
IL YN ANR VA+LCNHQRS+PK H+ SM L ++ ++ +K E L+ KK +
Sbjct: 490 ILRFYNDANREVAILCNHQRSIPKQHESSMEKLLKQQLELQEDLKICEVYLRLLKKNPNK 549
Query: 434 SKAMTDKKKTA--------------------------LGRLKEQLLKLEVQETDKEENKT 467
S + D K + L +K +L LE++ K++NKT
Sbjct: 550 SITLKDLPKLSTETSFNGKPRKFPINLSSNSEIIQKKLDSIKTKLSNLELKIKIKDDNKT 609
Query: 468 IALGTSKLNYLDPRISVTW 486
++L TSKLNY+DPRISV +
Sbjct: 610 VSLNTSKLNYMDPRISVAF 628
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA + +++ Q KYI L+ SS KG D+ KYE ARKL I+ IR++Y KS
Sbjct: 247 NVTWLAYYKDSINNQFKYIFLSASSGFKGMSDYNKYEKARKLKNFIHAIRDDYNKKMKSN 306
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEE 590
++ RQ A Y ID LALR G EKD E++ADTVGCCSLRVEHI +E+
Sbjct: 307 DIIHRQLGTATYLIDFLALRVGGEKDIEEEADTVGCCSLRVEHISFNED 355
>gi|14285799|sp|P93119.1|TOP1_DAUCA RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|1800221|gb|AAB41401.1| topoisomerase I [Daucus carota]
Length = 790
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 235/521 (45%), Positives = 311/521 (59%), Gaps = 53/521 (10%)
Query: 10 LSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAY 69
L+ + EE+AT +A M+E EY TK F NFM DWRK + EK +I +L CDF ++ +
Sbjct: 247 LTPEQEEVATMFAVMLETEYMTKPKFRENFMSDWRKILGEKH--IIQNLEDCDFTPIYEW 304
Query: 70 FVQKSEERKAMSKEEKKKIKDENEAITKE-YGVCTIDG-HKEKIGNFRIEPPGLFRGRGE 127
++ E++K MS +EKK IK+ + KE Y +DG +EK+GNFR+ + +
Sbjct: 305 HQREKEKKKQMSTDEKKAIKEGKDETRKEKYMWAVVDGMSREKVGNFRVGTTRVVQRSWR 364
Query: 128 HPKMGKLKRRVQAE-DIIINCSKDSKVPPPPPGH-KWKEVRHDNQVTWLASWTENVQG-Q 184
K ++K+ V ++ DI IN KD+ +P PP +WKE+RHDN VTWLA W + + +
Sbjct: 365 ASKDPQVKKNVYSQIDITINIGKDAPIPEPPIPGERWKEIRHDNTVTWLAFWNDPINPKE 424
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIREN-YQADWKSKEMRIRQRAVALYFI 243
KY+ L SS LKG+ +KYE +RKL I IR Y D+ SK+ + RQ AVA Y I
Sbjct: 425 FKYVFLAASSSLKGKVTREKYEKSRKLKDYIEGIRAAAYTKDFASKDSKKRQIAVATYLI 484
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALRAGNEKD+D+ADTVGCC+L+VE+++ +P ++ FDFLGKDSIRY NEV V
Sbjct: 485 DKLALRAGNEKDDDEADTVGCCTLKVENVETK-----RPNILKFDFLGKDSIRYQNEVEV 539
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL- 362
E RVF ++ F K+G DDLFD+L+TS LN HL ELM GLTAKVFRTYNASITL + +
Sbjct: 540 EPRVFSAIEQFRSGKEGGDDLFDQLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMVR 599
Query: 363 -----NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQ 417
E D AEK++ Y AN+ VA++CNHQR+V KSH M L EKI +
Sbjct: 600 CKLLSRETKGGDV--AEKVVVYQHANKEVAIICNHQRTVSKSHSAQMVRLNEKIEELKGL 657
Query: 418 VKDAERALKDAKKAGESKAMTD---KKKTALGRLKEQLLKL------------------- 455
+K+ + L K +D K+ L R K +LLKL
Sbjct: 658 LKELQEDLTRVNKGKPPLKNSDGKPKRNLNLKRYKGKLLKLIQKLRKWSETRRLSVTKKI 717
Query: 456 -------EVQETDKEEN---KTIALGTSKLNYLDPRISVTW 486
E E DKE KT+ALGTSK+NYLDPRI+V W
Sbjct: 718 AQTNTKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAW 758
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIREN-YQADWK 540
+VTWLA W + + + KY+ L SS LKG+ +KYE +RKL I IR Y D+
Sbjct: 409 TVTWLAFWNDPINPKEFKYVFLAASSSLKGKVTREKYEKSRKLKDYIEGIRAAAYTKDFA 468
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
SK+ + RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 469 SKDSKKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 514
>gi|427779891|gb|JAA55397.1| Putative dna topoisomerase i [Rhipicephalus pulchellus]
Length = 709
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 169/243 (69%), Positives = 203/243 (83%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G +KLS +AEE+A FY RM++H+YT+K+ FN NF DWRK MT KE +ITDL KC+F+
Sbjct: 447 GVPVKLSPEAEEVAGFYGRMLDHDYTSKDVFNKNFFHDWRKCMTSKEAELITDLKKCNFK 506
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ AY+ KSEERKAM+KEEK+ IK +NE + +EYG C IDGHK+KIGNF+IEPPGLFRG
Sbjct: 507 EIDAYYKMKSEERKAMTKEEKQAIKLQNEKLVEEYGFCIIDGHKQKIGNFKIEPPGLFRG 566
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG LKRR+ ED+IIN K++KVP PPPGHKWKEVRHD+ V+WL+SWTEN+ GQ
Sbjct: 567 RGEHPKMGMLKRRIMPEDVIINIGKEAKVPDPPPGHKWKEVRHDDNVSWLSSWTENILGQ 626
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYIMLNPSSKLKGEKD QKYE ARKL ++KIR+NY DWKSKEMRIRQR+VALYFID
Sbjct: 627 TKYIMLNPSSKLKGEKDMQKYEMARKLKSCVDKIRQNYMNDWKSKEMRIRQRSVALYFID 686
Query: 245 KLA 247
K+
Sbjct: 687 KVC 689
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 68/78 (87%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V+WL+SWTEN+ GQ KYIMLNPSSKLKGEKD QKYE ARKL ++KIR+NY DWKSK
Sbjct: 612 NVSWLSSWTENILGQTKYIMLNPSSKLKGEKDMQKYEMARKLKSCVDKIRQNYMNDWKSK 671
Query: 543 EMRIRQRAVALYFIDKLA 560
EMRIRQR+VALYFIDK+
Sbjct: 672 EMRIRQRSVALYFIDKVC 689
>gi|451927077|gb|AGF84955.1| topoisomerase 1b [Moumouvirus goulette]
Length = 542
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/489 (40%), Positives = 298/489 (60%), Gaps = 31/489 (6%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G E+ L ++EEIAT YA++IE +Y FN NF DWRK + +I +L DFR
Sbjct: 48 GDEIILDTNSEEIATLYAKLIETDYIKNRTFNKNFWSDWRKVLGPNH--IIQNLEDVDFR 105
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ Y +++ EE+K +K++ +E ++Y +DG ++ +GNFRIEPPG+F G
Sbjct: 106 PIYNYILEQKEEKKLDPTLREKRLIEE-----EKYKFALVDGKEQPVGNFRIEPPGIFLG 160
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG +PK G +K+R+ EDIIIN K++ +P P PGH+W ++ HD V WLA++ + + G+
Sbjct: 161 RGCNPKSGHVKKRIYPEDIIINIGKNTPIPEPLPGHQWMDIIHDQTVEWLAAYKDTITGK 220
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+ L S K + D K++ ARKL + I +IR + +S + RQ A ALYFID
Sbjct: 221 MKYVWLGAQSDFKAKSDLNKFDLARKLKRKIKQIRTENEISLRSDDKFTRQIATALYFID 280
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
ALR GNEK +D+ DTVG SLR+EH+ L DG V DFLGKDS+RY + ++
Sbjct: 281 NFALRVGNEKADDETDTVGVTSLRIEHVNLL---DGNR--VRLDFLGKDSVRYNRTLEID 335
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
+V++NL +E K SD LFD + + +NK+L M+ LTAKVFRTYNAS Q++LN+
Sbjct: 336 SQVYQNLVELMEGKSSSDQLFDLITPTDINKYLQSFMKNLTAKVFRTYNASNLFQKELNK 395
Query: 365 LMD--PDFSEAEKILA----YNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
+ + EA+KI +N+AN VA LCNHQ+++ KS ++ + L E I + ++
Sbjct: 396 INKKYDSYDEADKINILLDDFNKANAKVAQLCNHQKNITKSTNEQLKKLDESIKKAQDKL 455
Query: 419 KDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
+ A R+ K K + + RL+ + KL+ + K E K I+LGTSK+NY+
Sbjct: 456 RKARRSKK-------------KNQQTIERLENNVKKLKSKRALKTELKNISLGTSKINYI 502
Query: 479 DPRISVTWL 487
DPRI+V ++
Sbjct: 503 DPRITVAFM 511
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 67/105 (63%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA++ + + G++KY+ L S K + D K++ ARKL + I +IR + +S
Sbjct: 206 TVEWLAAYKDTITGKMKYVWLGAQSDFKAKSDLNKFDLARKLKRKIKQIRTENEISLRSD 265
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+ RQ A ALYFID ALR GNEK +D+ DTVG SLR+EH+ L
Sbjct: 266 DKFTRQIATALYFIDNFALRVGNEKADDETDTVGVTSLRIEHVNL 310
>gi|441432691|ref|YP_007354733.1| DNA topoisomerase 1b [Acanthamoeba polyphaga moumouvirus]
gi|440383771|gb|AGC02297.1| DNA topoisomerase 1b [Acanthamoeba polyphaga moumouvirus]
Length = 542
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/489 (41%), Positives = 300/489 (61%), Gaps = 31/489 (6%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G E+ L DAEEIAT YA++IE +Y FN NF DWRK + VI +L DFR
Sbjct: 48 GDEVVLDTDAEEIATLYAKLIETDYIKNRTFNKNFWSDWRKVLGPNH--VIQNLEDVDFR 105
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ Y +++ EE+K +++K+ +E ++Y +DG ++ +GNFRIEPPG+F G
Sbjct: 106 PIYNYILRQKEEKKLDPTIKERKLAEE-----EKYKFALVDGKEQPVGNFRIEPPGIFLG 160
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG +PK G +K+R+ EDIIIN K++ VP P PGH+W ++ HD V WLA++ + + G+
Sbjct: 161 RGCNPKSGHVKKRIYPEDIIINIGKNAPVPEPLPGHQWMDIIHDQTVEWLAAYKDTITGK 220
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+ L S LK + D K++ ARKL + I +IR+ + +S + RQ A ALYFID
Sbjct: 221 MKYVWLGAQSDLKAKSDLNKFDLARKLKRKIKQIRKENENALRSDDKFTRQIATALYFID 280
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
ALR GNEK +D+ DTVG SLR+EH+ L E V DFLGKDS+RY + ++
Sbjct: 281 NFALRVGNEKADDETDTVGVTSLRIEHVHLLENNR-----VRLDFLGKDSVRYNRTLEID 335
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
+V++NL+ F+E K D LFD + + +NK+L M+ LTAKVFRTYNAS Q++L +
Sbjct: 336 TQVYQNLKEFMEGKSPKDQLFDLITPTDVNKYLQSFMKNLTAKVFRTYNASNLFQKELKK 395
Query: 365 LMD--PDFSEAEKILA----YNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
+ + EA+KI +N+AN VA LCNHQ+++ KS ++ + L E I + ++
Sbjct: 396 INKKYDSYDEADKINILLDDFNKANAKVAQLCNHQKNITKSTNEQLKKLDESIKKAQDKL 455
Query: 419 KDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
+ A RA K K + +L+ + KL+ ++ K E K I+LGTSK+NY+
Sbjct: 456 RKARRAKK-------------KNPQTIAKLENNVKKLKSKKALKTELKNISLGTSKINYI 502
Query: 479 DPRISVTWL 487
DPRI+V ++
Sbjct: 503 DPRITVAFM 511
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 70/107 (65%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA++ + + G++KY+ L S LK + D K++ ARKL + I +IR+ + +S
Sbjct: 206 TVEWLAAYKDTITGKMKYVWLGAQSDLKAKSDLNKFDLARKLKRKIKQIRKENENALRSD 265
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHE 589
+ RQ A ALYFID ALR GNEK +D+ DTVG SLR+EH+ L E
Sbjct: 266 DKFTRQIATALYFIDNFALRVGNEKADDETDTVGVTSLRIEHVHLLE 312
>gi|413921286|gb|AFW61218.1| hypothetical protein ZEAMMB73_011101 [Zea mays]
Length = 438
Score = 369 bits (947), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 186/360 (51%), Positives = 246/360 (68%), Gaps = 9/360 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK 60
M GK + L+ + EE+AT +A M + +Y K F NF DWRK + + +I +
Sbjct: 81 MLYNGKPIDLTPEQEEVATMFAVMKDTDYAAKPTFIDNFFTDWRKVLGKNH--IIKNFEL 138
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF ++ + +++ E +K M+ EEKK ++++ ++Y +DG KEK+GNFR+EPPG
Sbjct: 139 CDFTPIYEWHLREKERKKQMTTEEKKTLREDKLKQEEKYMWAVVDGVKEKVGNFRVEPPG 198
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTE 179
LFRGRGEHPKMGKLKRR+ DI IN K + VP P PG WKEV+HDN VTWLA W +
Sbjct: 199 LFRGRGEHPKMGKLKRRILPSDITINIGKGAPVPECPIPGESWKEVKHDNTVTWLAFWND 258
Query: 180 NVQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + KY+ L SS LKG+ D +KYE +RKL I +IRENY D+K+K++ RQ AV
Sbjct: 259 PINPKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAV 318
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A Y IDKLALRAGNEKD+D+ADTVGCC+L+V+++ P + FDFLGKDSIRY+
Sbjct: 319 ATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNVTCMP-----PNQIQFDFLGKDSIRYF 373
Query: 299 NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
N V VE+ V+K ++ F KK DLFD+++TS LN HL +LM GLTAKVFRTYNASITL
Sbjct: 374 NTVEVEELVYKAIEGFRAGKKPGQDLFDKIDTSRLNAHLKDLMPGLTAKVFRTYNASITL 433
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 79/104 (75%), Gaps = 1/104 (0%)
Query: 483 SVTWLASWTENVQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L SS LKG+ D +KYE +RKL I +IRENY D+K+
Sbjct: 249 TVTWLAFWNDPINPKDFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKN 308
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
K++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V+++
Sbjct: 309 KDVTRRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVDNV 352
>gi|403353776|gb|EJY76433.1| Eukaryotic DNA topoisomerase I, catalytic core family protein
[Oxytricha trifallax]
Length = 617
Score = 367 bits (942), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 211/496 (42%), Positives = 301/496 (60%), Gaps = 22/496 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ M L+ + EEI ++A++I+ ++ K+ NF K + + E + +T L DF
Sbjct: 98 GQPMSLTPEQEEICNWWAQIIDQDFAKKDIVRKNFEKSFIELFDEDQG--VTSLDDFDFA 155
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+ Y + E RK + +EKK+ +E + Y C IDG EKI NF +EPPG+FRG
Sbjct: 156 PIVRYLQEFKESRKNRTTDEKKRELEERQKQDAFYKYCLIDGQLEKISNFMVEPPGIFRG 215
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASW----TE 179
RG+HP GKLK R+ E++ IN + +P PGH WK V + + TWL+ + TE
Sbjct: 216 RGDHPLAGKLKSRILPENVQINIGPEEPIPICNIPGHSWKRVLSNPEATWLSHFKDERTE 275
Query: 180 NVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVA 239
KY+ L SKLKGE D +KYE AR+L ++I I+ NY+ +S++ +Q V
Sbjct: 276 KSNNTGKYVFLAAESKLKGENDKKKYEKARRLKQNIKIIQRNYEDKMRSQDKVDQQLGVC 335
Query: 240 LYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYN 299
Y IDKLALR GNEK ED+ADTVGCCSL+V+++QL E D K + DFLGKDSIRY N
Sbjct: 336 TYLIDKLALRVGNEKGEDEADTVGCCSLKVKNVQL--EADNK---ITLDFLGKDSIRYLN 390
Query: 300 EVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V V++N++ F + K D+LF+R+N S LN +L E+ME L+AKVFRTYNAS+TLQ
Sbjct: 391 TVDVTPIVYQNIENFQKGKGPDDELFERINASRLNDYLKEMMEDLSAKVFRTYNASVTLQ 450
Query: 360 QQLNELMDPDFSEAE----KILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKR 415
QL E D SEA+ K+ Y NR VA LCNHQ+ K+HD+ + +K+ + K+
Sbjct: 451 TQLQE-HDNQLSEADVIQKKVDFYENCNREVARLCNHQKEAAKNHDEQVIKMKDVLEQKQ 509
Query: 416 KQVKDAERALKDAKKA-GESKAMTDKK----KTALGRLKEQLLKLEVQETDKEENKTIAL 470
+++++ E + KK G S K K + + +EQ + + T KE+NK AL
Sbjct: 510 QKLRNLEAEMIKIKKGKGSSDPKMPKTAEQCKIQIEKAREQYEQQLSRVTKKEQNKNYAL 569
Query: 471 GTSKLNYLDPRISVTW 486
GTSK+NY+DPRI+++W
Sbjct: 570 GTSKINYMDPRITISW 585
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 72/108 (66%), Gaps = 4/108 (3%)
Query: 484 VTWLASW----TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW 539
TWL+ + TE KY+ L SKLKGE D +KYE AR+L ++I I+ NY+
Sbjct: 263 ATWLSHFKDERTEKSNNTGKYVFLAAESKLKGENDKKKYEKARRLKQNIKIIQRNYEDKM 322
Query: 540 KSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+S++ +Q V Y IDKLALR GNEK ED+ADTVGCCSL+V+++QL
Sbjct: 323 RSQDKVDQQLGVCTYLIDKLALRVGNEKGEDEADTVGCCSLKVKNVQL 370
>gi|340506252|gb|EGR32433.1| hypothetical protein IMG5_083110 [Ichthyophthirius multifiliis]
Length = 675
Score = 364 bits (934), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 217/518 (41%), Positives = 318/518 (61%), Gaps = 45/518 (8%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
K + L+ EE+AT++++ + ++ K + NF K + + +EK D +K +F
Sbjct: 143 NKPIDLTLYQEEMATYWSQTLGTDWENKPCYRDNFSKQFLTTFSEKN----MDFNKFNFW 198
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+ + + E RK SKEEKK KD + + Y +D ++EK+G + IEPP LF+G
Sbjct: 199 PIKEHLEAQKEIRKNRSKEEKKSEKDRKDQLANFYAGAILDFYREKVGQYMIEPPTLFKG 258
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPP-PPGHKWKEVRHDNQVTWLASWTEN-VQ 182
RGEHPKMG +K R+Q E ++IN +KD+ +P GH W ++ H VTWLAS+ +N V+
Sbjct: 259 RGEHPKMGLMKGRIQPEAVVINIAKDAPIPKCIVAGHAWGDIVHKQDVTWLASYKDNSVK 318
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
Q KY L+ S+LK E D +KYE ARKL I +IRENY+ KS RQ A Y
Sbjct: 319 KQHKYFFLSAESRLKAENDKKKYEKARKLKNVIGQIRENYEMKLKSSNEVDRQLGTATYL 378
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALR GNEK E++ADTVGCCSLR+EHIQ+ ++ + FDFLGKDS+RY N V
Sbjct: 379 IDKLALRVGNEKSEEEADTVGCCSLRIEHIQVLDDCQ-----ISFDFLGKDSMRYQNTVK 433
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
V + V+KN+ F++NKK +LFD+++ S LN++L M+GLTAKVFRTYNAS TLQ++L
Sbjct: 434 VNEIVWKNISQFIKNKKDDQNLFDKIDASSLNEYLKSQMKGLTAKVFRTYNASHTLQKEL 493
Query: 363 NELMDPDFSEA---EKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVK 419
+ + ++ EK+ Y+ ANR VA+LCNHQ++V K+ D+ + +++++ K K
Sbjct: 494 DMAVSTKMNKMDLKEKLNFYDEANRNVAILCNHQKTVGKNFDQMLNRMEQRL----KAYK 549
Query: 420 DAERAL---------KDAKKA-----------GESKAMT-------DKKKTALGRLKEQL 452
D E+ L KD K+ G+ K +T DK + AL ++++++
Sbjct: 550 DYEKELLDHLNKCKKKDVKEYEEETILEEREDGKHKMLTKKFPSSADKTQEALEKIRKKI 609
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
+ + ++ +KE+NK IALGTSK NY DPRISV + W
Sbjct: 610 NEEKNKKDNKEKNKEIALGTSKTNYNDPRISVNFCKKW 647
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/105 (59%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
Query: 484 VTWLASWTEN-VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
VTWLAS+ +N V+ Q KY L+ S+LK E D +KYE ARKL I +IRENY+ KS
Sbjct: 306 VTWLASYKDNSVKKQHKYFFLSAESRLKAENDKKKYEKARKLKNVIGQIRENYEMKLKSS 365
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ A Y IDKLALR GNEK E++ADTVGCCSLR+EHIQ+
Sbjct: 366 NEVDRQLGTATYLIDKLALRVGNEKSEEEADTVGCCSLRIEHIQV 410
>gi|317447687|emb|CBK00915.1| topoisomerase 1 [Albonectria rigidiuscula]
Length = 482
Score = 364 bits (934), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 184/315 (58%), Positives = 224/315 (71%), Gaps = 10/315 (3%)
Query: 108 KEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRH 167
KEK+GNFR+EPPGLFRGRGEHPK GK+K RV E I IN KD+KVP PP GHKWK V+H
Sbjct: 2 KEKVGNFRVEPPGLFRGRGEHPKTGKVKNRVAPEQITINIGKDAKVPDPPKGHKWKAVQH 61
Query: 168 DNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWK 227
D + TWLA W EN+ G KY+ML S +KG+ D++K+E AR+L K I++IR++Y + K
Sbjct: 62 DQKATWLAMWQENINGNYKYVMLGADSDIKGKSDFKKFEKARELKKHIDRIRKDYTKELK 121
Query: 228 SKEMRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVC 286
S+ M RQRA A+Y ID+LALRAGNEKD E++ADTVGCCSL+ EHI L P V
Sbjct: 122 SEVMADRQRATAMYLIDRLALRAGNEKDTENEADTVGCCSLKYEHITLEP-----PNQVT 176
Query: 287 FDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKG-SDDLFDRLNTSVLNKHLSELMEGLT 345
FDFLGKDSI Y VE +VFKNL+LF + K DDLFDRLNTS LNKHL+ M GLT
Sbjct: 177 FDFLGKDSIPYRETATVEPQVFKNLKLFKKAPKTKGDDLFDRLNTSQLNKHLTNCMPGLT 236
Query: 346 AKVFRTYNASITLQQQLNELM-DPDF--SEAEKILAYNRANRAVAVLCNHQRSVPKSHDK 402
AKVFRTYNAS T+ + L E+ DP S AEK+ YN NR VA+LCNH+R+V H++
Sbjct: 237 AKVFRTYNASYTMSELLKEIAKDPRSRGSVAEKVKLYNDCNRKVAILCNHKRTVGAGHEQ 296
Query: 403 SMGNLKEKISNKRKQ 417
M L ++I R Q
Sbjct: 297 QMQKLGDRIKGLRYQ 311
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML S +KG+ D++K+E AR+L K I++IR++Y + KS+
Sbjct: 65 ATWLAMWQENINGNYKYVMLGADSDIKGKSDFKKFEKARELKKHIDRIRKDYTKELKSEV 124
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQL 587
M RQRA A+Y ID+LALRAGNEKD E++ADTVGCCSL+ EHI L
Sbjct: 125 MADRQRATAMYLIDRLALRAGNEKDTENEADTVGCCSLKYEHITL 169
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 32/43 (74%)
Query: 444 ALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
A +L +++ L+ Q D++ NK +ALGTSK+NY+DPR++V +
Sbjct: 423 AXEKLDDRIKTLKTQAEDRDGNKEVALGTSKINYIDPRLTVVF 465
>gi|258565969|ref|XP_002583729.1| DNA topoisomerase I [Uncinocarpus reesii 1704]
gi|237907430|gb|EEP81831.1| DNA topoisomerase I [Uncinocarpus reesii 1704]
Length = 889
Score = 362 bits (929), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 196/421 (46%), Positives = 261/421 (61%), Gaps = 34/421 (8%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSMTEKERA------ 53
M+ G + LS +AEE+A F+ M+ + + F NF +D+ + + A
Sbjct: 300 MKYDGVPITLSLEAEEVAGFFGSMLNSTHNVENPTFQKNFFEDFTAIIKKTGGAKNPQGN 359
Query: 54 --VITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I D KCDF+ + Y+ K E+KA+ E+K++K E +A Y C DG K+K+
Sbjct: 360 AVPIKDFKKCDFQPIFEYYEMKRLEKKALPAAERKRLKAEKDAAEAPYMYCMWDGRKQKV 419
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN K + VPPPPPGHKWKEV+HD +
Sbjct: 420 GNFRVEPPALFRGRGEHPKTGRVKTRVQPEQITINIGKGAAVPPPPPGHKWKEVKHDQEG 479
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K +
Sbjct: 480 TWLAMWQENINGNYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRKDYRKGLKDELT 539
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 540 ANRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLK-----PPNKVIFDFLG 594
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVENKKG-SDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL+ F + KG D++FDRL VFR
Sbjct: 595 KDSIRFYDEVEVDHQVFKNLKFFKKAPKGEGDEIFDRLT------------------VFR 636
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ L + M + EK+ YN ANR VA+LCNH+R+V H M L E+
Sbjct: 637 TYNASYTMATLLKQ-MQATGTVHEKVKQYNDANRKVAILCNHKRTVAAGHANQMEKLSER 695
Query: 411 I 411
I
Sbjct: 696 I 696
>gi|294885337|ref|XP_002771280.1| DNA topoisomerase, putative [Perkinsus marinus ATCC 50983]
gi|239874776|gb|EER03096.1| DNA topoisomerase, putative [Perkinsus marinus ATCC 50983]
Length = 551
Score = 362 bits (929), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 194/424 (45%), Positives = 278/424 (65%), Gaps = 13/424 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ + L +AEE+ATF+A+ + ++ KE F NF D++ + ++ ++ IT L CDF
Sbjct: 121 GEPIDLPPEAEEVATFFAQTLGTDWCQKEKFQNNFWADFQAKLPKELKSKITKLKDCDFE 180
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+ Y ++SE +KA +KEEK+ K+ Y +D +E++GNFR+EPP LFRG
Sbjct: 181 PIKNYLDKRSEAKKARTKEEKEAEKEAKRLNDHPYTHVIVDELRERVGNFRVEPPNLFRG 240
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVP-PPPPGHKWKEVRHDNQVTWLASWTENVQG 183
RG+HPKMGKLK+ + ED+ +NC+ D+ P P PGH +K+V HD VTWLA +T+ +
Sbjct: 241 RGDHPKMGKLKQYILPEDVTVNCAADAPAPRCPVPGHAYKDVVHDPAVTWLAWFTDTINN 300
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
QVKY+ LN +S KG+ DW KYE ARKL K I IR++Y KS + ++ A+Y I
Sbjct: 301 QVKYVFLNAASGFKGQSDWLKYEKARKLKKYIRGIRDDYTKKMKSSDDDEKELGTAVYLI 360
Query: 244 DKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
D+LALR GNEK+ E++ADTVGCCSLRVEH+ E D K + DFLGKDSIRY N V
Sbjct: 361 DRLALRVGNEKNTEEEADTVGCCSLRVEHMTF--EADNK---ITLDFLGKDSIRYLNTVQ 415
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
V+ V+KNL+ + +K D +F ++ S +N + + M+ L+AKVFRTYNASITL+Q+L
Sbjct: 416 VDPLVYKNLKTLCKARKPEDMIFS-IDPSKVNDYFKQFMQELSAKVFRTYNASITLEQEL 474
Query: 363 NELMDP---DFSE-AEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
+ DP D S+ +E + YN ANR VA+LCNHQR+ PK H+ M LK+K++++ +
Sbjct: 475 CKF-DPEEHDISDPSEMVKFYNDANRRVAILCNHQRAPPKQHEAGMERLKKKLADQEATL 533
Query: 419 KDAE 422
+ E
Sbjct: 534 RGLE 537
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 105/186 (56%), Gaps = 21/186 (11%)
Query: 407 LKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQ---ETDKE 463
L+E++ N R + + R D K +G+LK+ +L +V D
Sbjct: 223 LRERVGNFRVEPPNLFRGRGDHPK--------------MGKLKQYILPEDVTVNCAADAP 268
Query: 464 ENKTIALGTSKLNYL-DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETAR 522
+ G + + + DP +VTWLA +T+ + QVKY+ LN +S KG+ DW KYE AR
Sbjct: 269 APRCPVPGHAYKDVVHDP--AVTWLAWFTDTINNQVKYVFLNAASGFKGQSDWLKYEKAR 326
Query: 523 KLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLR 581
KL K I IR++Y KS + ++ A+Y ID+LALR GNEK+ E++ADTVGCCSLR
Sbjct: 327 KLKKYIRGIRDDYTKKMKSSDDDEKELGTAVYLIDRLALRVGNEKNTEEEADTVGCCSLR 386
Query: 582 VEHIQL 587
VEH+
Sbjct: 387 VEHMTF 392
>gi|378793086|gb|AFC56767.1| topoisomerase I, partial [Nebria crassicornis]
Length = 252
Score = 358 bits (920), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 175/233 (75%), Positives = 200/233 (85%), Gaps = 5/233 (2%)
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSD 322
GCCSLRVEHI LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK D
Sbjct: 1 GCCSLRVEHISLHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGD 60
Query: 323 DLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRA 382
DLFDRLNT+++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL +PD S AEKIL+YNRA
Sbjct: 61 DLFDRLNTAIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNPDDSVAEKILSYNRA 120
Query: 383 NRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAM 437
NRAVA+LCNHQRSVPKSH+KSM LKEKI KR+ V+D +R +KDA++ + + K +
Sbjct: 121 NRAVAILCNHQRSVPKSHEKSMEKLKEKIDQKRENVQDMQRQVKDAQRDAKHGSVKEKVV 180
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
DKKK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 YDKKKKTLERLKEQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 233
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 576 GCCSLRVEHIQLHEEKDEK 594
GCCSLRVEHI LHE+KD K
Sbjct: 1 GCCSLRVEHISLHEQKDGK 19
>gi|378793088|gb|AFC56768.1| topoisomerase I, partial [Nebria gyllenhali]
gi|378793090|gb|AFC56769.1| topoisomerase I, partial [Nebria nivalis]
gi|378793092|gb|AFC56770.1| topoisomerase I, partial [Nebria nivalis]
gi|378793094|gb|AFC56771.1| topoisomerase I, partial [Nebria baicalica]
gi|378793096|gb|AFC56772.1| topoisomerase I, partial [Nebria subdilatata]
gi|378793098|gb|AFC56773.1| topoisomerase I, partial [Nebria gouleti]
gi|378793100|gb|AFC56774.1| topoisomerase I, partial [Nebria gouleti]
Length = 252
Score = 358 bits (918), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 174/233 (74%), Positives = 200/233 (85%), Gaps = 5/233 (2%)
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSD 322
GCCSLRVEHI LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK D
Sbjct: 1 GCCSLRVEHISLHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGD 60
Query: 323 DLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRA 382
DLFDRLNT+++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL +PD S AEKIL+YNRA
Sbjct: 61 DLFDRLNTAIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNPDDSMAEKILSYNRA 120
Query: 383 NRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAM 437
NRAVA+LCNHQRSVPKSH+KSM LKEKI KR+ ++D +R +KDA++ + + K +
Sbjct: 121 NRAVAILCNHQRSVPKSHEKSMEKLKEKIDQKRENIQDMQRQVKDAQRDAKHGSVKEKVV 180
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
DKKK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 YDKKKKTLERLKEQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 233
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 576 GCCSLRVEHIQLHEEKDEK 594
GCCSLRVEHI LHE+KD K
Sbjct: 1 GCCSLRVEHISLHEQKDGK 19
>gi|119602668|gb|EAW82262.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_c [Homo sapiens]
Length = 383
Score = 358 bits (918), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 157/245 (64%), Positives = 199/245 (81%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ ++LS AEE+ATFY RM++HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 74 GRPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFT 133
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +S+EEK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRG
Sbjct: 134 EIHRYFVDKAAARKVLSREEKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRG 193
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ
Sbjct: 194 RGDHPKMGMLKRRITPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNS 253
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 254 IKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 313
Query: 245 KLALR 249
K+ ++
Sbjct: 314 KVGVQ 318
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 68/80 (85%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 239 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 298
Query: 543 EMRIRQRAVALYFIDKLALR 562
EM+ RQRAVALYFIDK+ ++
Sbjct: 299 EMKTRQRAVALYFIDKVGVQ 318
>gi|119602671|gb|EAW82265.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_f [Homo sapiens]
Length = 389
Score = 358 bits (918), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 157/245 (64%), Positives = 199/245 (81%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ ++LS AEE+ATFY RM++HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 80 GRPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFT 139
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +S+EEK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRG
Sbjct: 140 EIHRYFVDKAAARKVLSREEKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRG 199
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ
Sbjct: 200 RGDHPKMGMLKRRITPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNS 259
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 260 IKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 319
Query: 245 KLALR 249
K+ ++
Sbjct: 320 KVGVQ 324
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 68/80 (85%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 245 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 304
Query: 543 EMRIRQRAVALYFIDKLALR 562
EM+ RQRAVALYFIDK+ ++
Sbjct: 305 EMKTRQRAVALYFIDKVGVQ 324
>gi|323448323|gb|EGB04223.1| hypothetical protein AURANDRAFT_70404 [Aureococcus anophagefferens]
Length = 651
Score = 357 bits (917), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 210/518 (40%), Positives = 296/518 (57%), Gaps = 55/518 (10%)
Query: 5 GKEMKLSQDAEEIATFYARMIEH------EYTTKEAFNTNFMKDWRKSMTEKERAVITDL 58
G + L+ EE+ATFYA M E +E F NF DW K + + I
Sbjct: 113 GVPISLTPYQEELATFYAAMPEDGPQLNVSGGQREIFQRNFWDDWHKVLGKSH--AIKSF 170
Query: 59 SKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEP 118
KCDF + + + ++A S EK ++ + G +D H EK+GNFR+EP
Sbjct: 171 DKCDFSDISKHLDRLKFVKRAASDAEKVVARELRDDCQLRSGYAILDDHLEKVGNFRMEP 230
Query: 119 PGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPP-----GHKWKEVRHDNQVTW 173
P LFRGRG+HPK G +K RV+ + + INC PPP G W E++HD+ VTW
Sbjct: 231 PSLFRGRGKHPKTGVVKLRVEPDQVSINCGASR----PPPICLELGRSWGEIKHDDTVTW 286
Query: 174 LASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRI 233
L++W ENV KY+ML +S LKG+ D++K++ A +L I ++R Y + KSK+ +
Sbjct: 287 LSTWHENVMQSNKYVMLAANSSLKGKSDFKKFQKAMQLKGCIERVRHGYHKNLKSKDRHL 346
Query: 234 RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKD 293
+Q+A ++ ID LALR G EK E++ADTVGCCSLRVEH H K GK V +FLGKD
Sbjct: 347 KQQATTMWLIDTLALRVGGEKSEEEADTVGCCSLRVEHFTFH--KTGKD--VDLEFLGKD 402
Query: 294 SIRYYNEVPVE------KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAK 347
SI + + ++ + N++ +KK ++ +F+ + + LN HLS +M GLTAK
Sbjct: 403 SILFKQSIDFAGFDEHGQQAYDNIREMCRSKKKNEQVFELIEPTSLNAHLSSIMPGLTAK 462
Query: 348 VFRTYNASITLQQQLNELMDPDF-------SEAEKILAYNRANRAVAVLCNHQRSVPKSH 400
VFRTYNAS TLQ QL PD S +K++AYN ANR VA+LCNHQR+V +
Sbjct: 463 VFRTYNASETLQNQL-----PDAEHVLEMRSIGDKLIAYNEANRIVAILCNHQRTVSAAA 517
Query: 401 DKSMGNLKEKISNKRKQVKDAERALKDAK---KAGESKA-------MTDKKKTA--LGRL 448
+ EK+ +Q+KD R L++ + KAG+ A + D+K + +
Sbjct: 518 ATGLEAQAEKL----EQLKDQRRELQNMRTTLKAGKDNAEAHRFAKLPDEKDVSKRIDIW 573
Query: 449 KEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
E++ KLE+ +KEENK ++LGTSK NYLDPRISV W
Sbjct: 574 TEKIKKLEIDLRNKEENKEVSLGTSKANYLDPRISVAW 611
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 85/134 (63%), Gaps = 1/134 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL++W ENV KY+ML +S LKG+ D++K++ A +L I ++R Y + KSK
Sbjct: 283 TVTWLSTWHENVMQSNKYVMLAANSSLKGKSDFKKFQKAMQLKGCIERVRHGYHKNLKSK 342
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE-KDEKKIYNKTQ 601
+ ++Q+A ++ ID LALR G EK E++ADTVGCCSLRVEH H+ KD +
Sbjct: 343 DRHLKQQATTMWLIDTLALRVGGEKSEEEADTVGCCSLRVEHFTFHKTGKDVDLEFLGKD 402
Query: 602 RAKFRWAIDMATAD 615
F+ +ID A D
Sbjct: 403 SILFKQSIDFAGFD 416
>gi|357467031|ref|XP_003603800.1| DNA topoisomerase I [Medicago truncatula]
gi|355492848|gb|AES74051.1| DNA topoisomerase I [Medicago truncatula]
Length = 921
Score = 357 bits (917), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 198/420 (47%), Positives = 266/420 (63%), Gaps = 24/420 (5%)
Query: 84 EKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPK-----MGKLKRRV 138
EKK +K++ ++Y +DG KEK+GNFR+EPPGLF GRGEHPK +GK+KRR+
Sbjct: 470 EKKALKEQKMKQEEKYMWAIVDGVKEKVGNFRVEPPGLFIGRGEHPKVGTIIIGKVKRRI 529
Query: 139 QAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQ-GQVKYIMLNPSSKL 196
D+ IN K + +P P PG WKE++H + WLA W + + + K++ L+PSS L
Sbjct: 530 HPSDVSINIGKYTPIPECPIPGESWKEIKHKDTRIWLAKWRDPINPNKSKHVSLDPSSSL 589
Query: 197 KGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDE 256
KG+ D +KYE AR L I IR Y + SK++ +Q AVA YFIDKLALRAGNEKD+
Sbjct: 590 KGQSDKEKYEKARMLKSYIGNIRAAYTEGFTSKDITKQQIAVATYFIDKLALRAGNEKDD 649
Query: 257 DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVE 316
++ADTVGCC+L++E++ K FDFLGKDSI+Y N V VE V+ + F +
Sbjct: 650 EEADTVGCCTLKIENVTAQGHNKLK-----FDFLGKDSIKYENTVEVELPVYNAILKFQK 704
Query: 317 NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN-ELMDPDFSEAEK 375
+K DDLFD+L+TS LN HL ELM LTAKVFRT+NAS TL LN E D D +E +
Sbjct: 705 DKHPGDDLFDKLDTSKLNAHLKELMPNLTAKVFRTFNASFTLDDMLNKETKDGDVAEKKD 764
Query: 376 ILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESK 435
+ Y AN+ VA++CNHQRSV K+H + L EKI + +++ + LK A+K
Sbjct: 765 V--YQHANKQVAIICNHQRSVSKNHSAQISKLNEKIVELQASLRELKIDLKRARKENSPL 822
Query: 436 AMTDKKKTALG------RLKEQLLKLEVQETD---KEENKTIALGTSKLNYLDPRISVTW 486
+D KK L ++ + K+E + D KE+ KT+ALGTSK+NYLDPRISV W
Sbjct: 823 TSSDGKKRNLNPEAIEKKITQTSAKIEKMQRDMHTKEDLKTVALGTSKINYLDPRISVAW 882
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 56/112 (50%), Positives = 78/112 (69%), Gaps = 4/112 (3%)
Query: 475 LNYLDPRISVTWLASWTENVQ-GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRE 533
+ + D RI WLA W + + + K++ L+PSS LKG+ D +KYE AR L I IR
Sbjct: 557 IKHKDTRI---WLAKWRDPINPNKSKHVSLDPSSSLKGQSDKEKYEKARMLKSYIGNIRA 613
Query: 534 NYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
Y + SK++ +Q AVA YFIDKLALRAGNEKD+++ADTVGCC+L++E++
Sbjct: 614 AYTEGFTSKDITKQQIAVATYFIDKLALRAGNEKDDEEADTVGCCTLKIENV 665
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
K + L+ + EE+AT +A +++ +Y E F NF DWRK + E VI +L CDF
Sbjct: 323 AKPVTLTPEQEEVATMFA-VVDAKYMQNEIFKDNFWNDWRKLLGENH--VIQNLKDCDFT 379
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIK 89
++ + + +++K MS E ++++K
Sbjct: 380 PIYDWCQVEKDKKKQMSSESRQRVK 404
>gi|429327307|gb|AFZ79067.1| DNA topoisomerase type I, putative [Babesia equi]
Length = 807
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 216/544 (39%), Positives = 298/544 (54%), Gaps = 69/544 (12%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKE-----RAVITDLS 59
G+EM L + EEIAT +A+ I Y T E + NF W ++ E R + L
Sbjct: 247 GEEMVLPPEIEEIATMWAQSIGTNYETSEIYCKNF---WNVFTSKFEKSHPIRKSSSKLK 303
Query: 60 KCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPP 119
CDF K+ + ++ +++K +KE + E + ++ +D +EK+ + ++EPP
Sbjct: 304 DCDFSKIKEH-LENEKQKKKDNKEFYQAKAAETAKLEHKFNYALVDWIREKVSSNKLEPP 362
Query: 120 GLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP----PGHKWKEVRHDNQVTWLA 175
GLF+GRG HPK G LK R+ D+I+N SKD+ VP GH WK++ HDN VTWLA
Sbjct: 363 GLFKGRGLHPKQGLLKCRMFPYDVILNLSKDAPVPKVSNFQRDGHCWKDIYHDNSVTWLA 422
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
+ +++ Q KY+ L SK KG D KY AR L I KIRE+Y A S +M RQ
Sbjct: 423 YYRDSINDQFKYMYLAAQSKFKGLHDLLKYNKARDLKNYIEKIREDYHAKMLSLDMFERQ 482
Query: 236 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSI 295
A Y ID LALR G EKD D+ADTVGCCSLRVEHI+ + D KP V+ DFLGKDSI
Sbjct: 483 IGTATYLIDFLALRVGGEKDADEADTVGCCSLRVEHIKFN---DKKPNVITLDFLGKDSI 539
Query: 296 RYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNAS 355
RY+N V + + N+ F KK + ++F+ +NT+ LN +L E+M+GL+AKVFRTYNAS
Sbjct: 540 RYFNTVTLNDVAYNNMVKFCYRKKPNAEIFNLINTTKLNDYLKEMMDGLSAKVFRTYNAS 599
Query: 356 ITLQQQLNEL----------------------MDPDFSEAEKILA-YNRANRAVAVLCNH 392
ITLQ Q L + D ++L YN ANR VA+LCNH
Sbjct: 600 ITLQNQFKRLKGKKKQNTDSSGDVSTDSSTKPISVDICNVSELLQFYNFANREVAILCNH 659
Query: 393 QRSVPKSHDKSMGN-------LKEKISNKRKQVKDAERALKD------------------ 427
QRS+PK H+ SM LKE I + +K E K
Sbjct: 660 QRSIPKQHENSMSKLKVQADMLKEDIEELNQYIKHLESGSKTEFQFESKTLDVNGNPRKR 719
Query: 428 -AKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
K + +A ++ +T R K+ +K+ + K+ NKT+ALGTSK+NY+DPRI+V +
Sbjct: 720 ITKSGMKLEACKNRLQTVKKRQKDHSIKMRI----KDSNKTVALGTSKINYMDPRITVAF 775
Query: 487 LASW 490
+
Sbjct: 776 CKKY 779
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 71/109 (65%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SVTWLA + +++ Q KY+ L SK KG D KY AR L I KIRE+Y A S
Sbjct: 417 SVTWLAYYRDSINDQFKYMYLAAQSKFKGLHDLLKYNKARDLKNYIEKIREDYHAKMLSL 476
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEK 591
+M RQ A Y ID LALR G EKD D+ADTVGCCSLRVEHI+ +++K
Sbjct: 477 DMFERQIGTATYLIDFLALRVGGEKDADEADTVGCCSLRVEHIKFNDKK 525
>gi|378793108|gb|AFC56778.1| topoisomerase I, partial [Nebria lacustris]
Length = 231
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/229 (75%), Positives = 199/229 (86%), Gaps = 5/229 (2%)
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSD 322
GCCSLRVEHI LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK D
Sbjct: 1 GCCSLRVEHISLHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGD 60
Query: 323 DLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRA 382
DLFDRLNT+++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL +PD S AEKIL+YNRA
Sbjct: 61 DLFDRLNTAIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNPDDSMAEKILSYNRA 120
Query: 383 NRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAM 437
NRAVA+LCNHQRSVPKSH+KSM LKEKI KR+ ++D +R +KDA++ + + K +
Sbjct: 121 NRAVAILCNHQRSVPKSHEKSMEKLKEKIDQKRENIQDMQRQVKDAQRDAKHGSVKEKVV 180
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
DKKK L RLK+QL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W
Sbjct: 181 YDKKKKTLERLKDQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAW 229
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 576 GCCSLRVEHIQLHEEKDEK 594
GCCSLRVEHI LHE+KD K
Sbjct: 1 GCCSLRVEHISLHEQKDGK 19
>gi|378793084|gb|AFC56766.1| topoisomerase I, partial [Nebria brevicollis]
Length = 252
Score = 357 bits (916), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/233 (74%), Positives = 201/233 (86%), Gaps = 5/233 (2%)
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSD 322
GCCSLRVEHI LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK D
Sbjct: 1 GCCSLRVEHITLHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGD 60
Query: 323 DLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRA 382
DLFDRLNT+++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL +PD S AEKIL+YNRA
Sbjct: 61 DLFDRLNTAIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNPDDSLAEKILSYNRA 120
Query: 383 NRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAM 437
NRAVA+LCNHQRSVPKSH+KSM LKEKI KR+ V+D +R +KDA++ + + K +
Sbjct: 121 NRAVAILCNHQRSVPKSHEKSMEKLKEKIEQKRENVQDMQRQVKDAQRDAKHGSVKEKVV 180
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
DKKK +L RLK+QL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 YDKKKKSLERLKDQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 233
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 576 GCCSLRVEHIQLHEEKDEK 594
GCCSLRVEHI LHE+KD K
Sbjct: 1 GCCSLRVEHITLHEQKDGK 19
>gi|298711983|emb|CBJ32924.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1123
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 220/568 (38%), Positives = 304/568 (53%), Gaps = 85/568 (14%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKE---AFNTNFMKDWRKSMTEKERAVITDLSKC 61
GKE+ L+ EE+ATFYA M E FN NF D++ + + VI D
Sbjct: 393 GKEVHLTTQQEEVATFYASMPLDGPQLAEQGKVFNKNFFTDFKAVLGKGH--VIKDFKLL 450
Query: 62 DFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGL 121
DF + A+ + + A + EK K E + +Y +DGH EK+GN+ +EPPGL
Sbjct: 451 DFSAIRAHLDITKQIKLAATDGEKAAAKTVKEELVHKYSYAIVDGHLEKVGNYNVEPPGL 510
Query: 122 FRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTEN 180
FRGRGEHPK GKLK RV A DI INC++ VP PG+ W+ V+H+ TWL+ W
Sbjct: 511 FRGRGEHPKTGKLKARVTASDIAINCAEGVCVPRCNMPGYAWQSVQHNPSATWLSKWDGL 570
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ G KY+ML SS KG+ D KY+ A KL I +IR +Y S + R +Q A A+
Sbjct: 571 LAG-TKYMMLAASSSFKGKSDMAKYDKAMKLKGFIERIRTDYVKKLSSSDRRTKQIATAV 629
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
+ IDKLALR G EK +D+ADTVGCCSLR EH+ H + + +FLGKDS+ +
Sbjct: 630 WIIDKLALRVGGEKGQDEADTVGCCSLRTEHLTFHATNN----EIDLEFLGKDSMLFKET 685
Query: 301 V------PVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
+ V +RVFKNLQ F + K+ S+++FD L+ S+LN HL LM GLTAKVFRTYNA
Sbjct: 686 IDFDRYGDVGRRVFKNLQAFCKGKRQSEEVFDYLDPSILNLHLQSLMPGLTAKVFRTYNA 745
Query: 355 SITLQQQL-NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI-- 411
S TLQQ+L E S AEK+ YN ANR VA+LCNHQR+V + + + ++++
Sbjct: 746 SDTLQQKLPGEAALAGLSVAEKVALYNLANREVAILCNHQRTVSSAQKEGLEKQRDRLAM 805
Query: 412 -------------------------SNKRKQVKDAERALKD----------------AKK 430
SN + Q + A RAL+ A K
Sbjct: 806 LTKQKQELKQMLRTIKSGKGSVPLKSNDKSQEESAVRALEKAKKAKANAKTNAEKVAATK 865
Query: 431 AGES-----KAMTDKKKTALG----------------RLKEQLLKLEVQETDKEENKTIA 469
AGE+ KA ++ A+ R +++ KL++ D+++NK ++
Sbjct: 866 AGETAKALRKAAQQARQEAMHLFAKNPSAESVEERIKRWGDKIKKLQIVIRDRDDNKEVS 925
Query: 470 LGTSKLNYLDPRISVTWLAS---WTENV 494
L TSK+NY+DPR+ L + W NV
Sbjct: 926 LSTSKINYMDPRVFAKTLQNKFVWAMNV 953
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
S TWL+ W + G KY+ML SS KG+ D KY+ A KL I +IR +Y S
Sbjct: 560 SATWLSKWDGLLAG-TKYMMLAASSSFKGKSDMAKYDKAMKLKGFIERIRTDYVKKLSSS 618
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDE 593
+ R +Q A A++ IDKLALR G EK +D+ADTVGCCSLR EH+ H +E
Sbjct: 619 DRRTKQIATAVWIIDKLALRVGGEKGQDEADTVGCCSLRTEHLTFHATNNE 669
>gi|378793102|gb|AFC56775.1| topoisomerase I, partial [Nebria hudsonica]
gi|378793104|gb|AFC56776.1| topoisomerase I, partial [Nebria lacustris]
gi|378793106|gb|AFC56777.1| topoisomerase I, partial [Nebria lacustris]
gi|378793110|gb|AFC56779.1| topoisomerase I, partial [Nebria lacustris]
gi|378793112|gb|AFC56780.1| topoisomerase I, partial [Nebria lacustris]
gi|378793114|gb|AFC56781.1| topoisomerase I, partial [Nebria lacustris]
gi|378793116|gb|AFC56782.1| topoisomerase I, partial [Nebria lacustris]
gi|378793118|gb|AFC56783.1| topoisomerase I, partial [Nebria lacustris]
gi|378793120|gb|AFC56784.1| topoisomerase I, partial [Nebria lacustris]
gi|378793122|gb|AFC56785.1| topoisomerase I, partial [Nebria lacustris]
gi|378793124|gb|AFC56786.1| topoisomerase I, partial [Nebria lacustris]
gi|378793126|gb|AFC56787.1| topoisomerase I, partial [Nebria lacustris]
gi|378793128|gb|AFC56788.1| topoisomerase I, partial [Nebria bellorum]
gi|378793130|gb|AFC56789.1| topoisomerase I, partial [Nebria bellorum]
gi|378793132|gb|AFC56790.1| topoisomerase I, partial [Nebria bellorum]
Length = 252
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 173/233 (74%), Positives = 200/233 (85%), Gaps = 5/233 (2%)
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSD 322
GCCSLRVEHI LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK D
Sbjct: 1 GCCSLRVEHISLHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGD 60
Query: 323 DLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRA 382
DLFDRLNT+++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL +PD S AEKIL+YNRA
Sbjct: 61 DLFDRLNTAIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNPDDSMAEKILSYNRA 120
Query: 383 NRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAM 437
NRAVA+LCNHQRSVPKSH+KSM LKEKI KR+ ++D +R +KDA++ + + K +
Sbjct: 121 NRAVAILCNHQRSVPKSHEKSMEKLKEKIDQKRENIQDMQRQVKDAQRDAKHGSVKEKVV 180
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
DKKK L RLK+QL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 YDKKKKTLERLKDQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 233
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/19 (84%), Positives = 17/19 (89%)
Query: 576 GCCSLRVEHIQLHEEKDEK 594
GCCSLRVEHI LHE+KD K
Sbjct: 1 GCCSLRVEHISLHEQKDGK 19
>gi|363540711|ref|YP_004894910.1| mg859 gene product [Megavirus chiliensis]
gi|448825862|ref|YP_007418793.1| DNA topoisomerase 1b [Megavirus lba]
gi|350611876|gb|AEQ33320.1| DNA topoisomerase 1b [Megavirus chiliensis]
gi|425701804|gb|AFX92966.1| DNA topoisomerase 1b [Megavirus courdo11]
gi|444237047|gb|AGD92817.1| DNA topoisomerase 1b [Megavirus lba]
Length = 543
Score = 356 bits (914), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 202/489 (41%), Positives = 296/489 (60%), Gaps = 31/489 (6%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+E+ L D+EEIAT YA+ IE +Y + FN NF DWR+ + +I +L DF
Sbjct: 49 GQEIVLDIDSEEIATLYAKYIESDYVKSKTFNRNFWNDWRQILGPDH--IIQNLEDVDFG 106
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ Y +Q+ EE+K ++ K+ + E E Y +DG + +GNFRIEPPG+F G
Sbjct: 107 LIYEYLLQQREEKK-LNPINKELKEKEEEKYKYAY----VDGKMQPVGNFRIEPPGIFLG 161
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG +PK G +KRR+ EDIIIN +++VP P PGH+W++V HD V WLAS+ +++ G+
Sbjct: 162 RGCNPKSGLVKRRIYPEDIIINIGVEARVPDPLPGHEWRDVIHDKTVEWLASYKDDITGK 221
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KY+ L S K D K++ ARKL + I IR+ + S ++ RQ A ALYFID
Sbjct: 222 IKYVWLGAQSDFKANSDINKFDLARKLKRRIKSIRKQNEEAMNSNDIYTRQIATALYFID 281
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
K ALR GNEK ED+ DTVG SLRVEHI L + DFLGKDS+RY + V+
Sbjct: 282 KFALRVGNEKGEDETDTVGVTSLRVEHIDLLNNDK-----IRLDFLGKDSVRYDRTLEVD 336
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
V+KN+Q F+E KK D LFD + + +NK+L M+ LTAKVFRTYNAS Q++LN+
Sbjct: 337 PLVYKNIQEFMEGKKKGDQLFDLITPTDVNKYLQSFMKNLTAKVFRTYNASDLFQKELNK 396
Query: 365 LMD--PDFSEAEKILA----YNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
+ + E +KI +N+AN VA+LCNHQ+++ KS ++ + + E I
Sbjct: 397 ITKKYDKYEEIDKINILLDDFNKANAKVAMLCNHQKNITKSTNQQLKKIDEMIK------ 450
Query: 419 KDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
K K +++ K ++ R++ + +L+ +++ K E K I+LGTSK+NY+
Sbjct: 451 -------KSQDKLRKARKAKKKNPQSIARMESVVKRLKSKKSLKTELKNISLGTSKINYI 503
Query: 479 DPRISVTWL 487
DPRI+V ++
Sbjct: 504 DPRITVAFM 512
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 68/105 (64%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLAS+ +++ G++KY+ L S K D K++ ARKL + I IR+ + S
Sbjct: 207 TVEWLASYKDDITGKIKYVWLGAQSDFKANSDINKFDLARKLKRRIKSIRKQNEEAMNSN 266
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
++ RQ A ALYFIDK ALR GNEK ED+ DTVG SLRVEHI L
Sbjct: 267 DIYTRQIATALYFIDKFALRVGNEKGEDETDTVGVTSLRVEHIDL 311
>gi|226287479|gb|EEH42992.1| DNA topoisomerase [Paracoccidioides brasiliensis Pb18]
Length = 825
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 204/511 (39%), Positives = 290/511 (56%), Gaps = 41/511 (8%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDW----RKSMTEKER--- 52
M+ G + L+ +AEE+A F+ M+ + + F NF D+ +KS K+
Sbjct: 298 MKYDGVPITLAPEAEEVAGFFGSMLNSTHNVENPTFQKNFFNDFTAYVKKSGGAKDPNGN 357
Query: 53 -AVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
I KCDF+ + ++ E+KA+ EKK++K E + + Y C DG K+K+
Sbjct: 358 PVAINSFDKCDFKPIFEFYEAARLEKKALPATEKKRLKAEKDELEAPYMYCMWDGRKQKV 417
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK GK+K RV E I IN K++KVP PP GHKWKEV+HD +
Sbjct: 418 GNFRVEPPALFRGRGEHPKTGKVKTRVMPEQITINIGKEAKVPIPPAGHKWKEVKHDQEG 477
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y+ K + M
Sbjct: 478 TWLAMWQENINGNYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRSDYKKGLKQELM 537
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 538 AERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTLK-----PPNTVIFDFLG 592
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIRYY+EV V+ +VFKNL++F + KK D++FDRL L L + + +
Sbjct: 593 KDSIRYYDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTIKGLKYQQWRLKQMMLDLDPK 652
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
+L+E +D ++ + + A L QR K + +
Sbjct: 653 LKKKKGAAYFELDESLDQEWIKEHQ-----------AFLVEEQRQKIKKKFEKDNEKRVA 701
Query: 411 ISNKRKQVKDAERALKDAKK--------AGESKAMTDKKKTALGRLKEQLLKL------- 455
K + K+ E L+ A + K + + K + +L+ QLLKL
Sbjct: 702 EGEKEMKAKELEERLEAANELEAKFKKENKSKKVVPEGKGVTVEKLENQLLKLGQRIENM 761
Query: 456 EVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+Q DKE NK +ALGTSK+NY+DPR++V +
Sbjct: 762 SLQAEDKENNKEVALGTSKINYIDPRLTVVF 792
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 77/103 (74%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y+ K + M
Sbjct: 478 TWLAMWQENINGNYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIRSDYKKGLKQELM 537
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 538 AERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYEHVTL 580
>gi|156085707|ref|XP_001610263.1| DNA topoisomerase [Babesia bovis]
gi|154797515|gb|EDO06695.1| DNA topoisomerase [Babesia bovis]
Length = 701
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 218/542 (40%), Positives = 307/542 (56%), Gaps = 73/542 (13%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDW-----RKSMTEKERAVITDLS 59
G+ + L+ D EE+ATF+A+ I Y E + NF + + + K +A + D
Sbjct: 141 GEPITLTPDLEEVATFWAQSIGTNYEESEIYRRNFWNTFTSMFPKGHVIRKSKATLKD-- 198
Query: 60 KCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPP 119
CDF ++ A+ + E+K KE K +K+E Y +D +EK+G+ R+EPP
Sbjct: 199 -CDFSEIRAH-LDMEREKKKEQKEYYKALKEETAKKEHPYCYALVDWIREKVGSNRMEPP 256
Query: 120 GLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP----PGHKWKEVRHDNQVTWLA 175
GLF+GRG HPK G LK R +++N SKD+ VP GH W ++ HD+ VTWLA
Sbjct: 257 GLFKGRGLHPKQGLLKGRTFPHSVVLNLSKDAPVPKVSMFERQGHGWSDIFHDSSVTWLA 316
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
+ + V Q KY+ SK KG D+ KY AR+L K I KIR++Y +S E+ RQ
Sbjct: 317 YYRDTVNDQTKYMYPAAQSKFKGLHDFLKYSKARELKKHIMKIRKDYHGKMRSPEIVDRQ 376
Query: 236 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSI 295
A Y ID LALR G EKD D+ADTVGCCSLRVEHI+ D KP + DFLGKDSI
Sbjct: 377 LGTATYLIDFLALRVGGEKDADEADTVGCCSLRVEHIKF----DRKPNTITLDFLGKDSI 432
Query: 296 RYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNAS 355
RY++ V +++ +NL F + KK ++D+FD++NT LN +L +LM GLTAKVFRTYNAS
Sbjct: 433 RYFHTVTLDEVACRNLSEFCK-KKPTEDIFDKINTVKLNDYLKDLMTGLTAKVFRTYNAS 491
Query: 356 ITLQQQLNEL-----------MDP-------------DFSEAEKILA-YNRANRAVAVLC 390
ITL +QL L + P D ++ ++++ YN ANR VA+LC
Sbjct: 492 ITLCRQLRRLKVRKSLDSSLMLQPGKSDDDLDKPVLVDVTDVNELISFYNEANRRVAILC 551
Query: 391 NHQRSVPKSHDKSMGNLK-------EKI-----------SNKRKQVKDAERALK---DAK 429
NHQRS+PK H+ SM ++ E+I SN+ K R + + +
Sbjct: 552 NHQRSIPKQHESSMSKMQAQAELISEEIAELQAYMKYLESNQTKPFTFESRTVDAKGNPR 611
Query: 430 KAGESKAM-----TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
KA + M K +TA+ R K +K+ + K++NKT+ALGTSK+NY+DPRI+V
Sbjct: 612 KAATRQGMKLEACQKKLETAMKRSKVHAIKMRI----KDDNKTVALGTSKINYMDPRITV 667
Query: 485 TW 486
+
Sbjct: 668 AF 669
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 68/105 (64%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SVTWLA + + V Q KY+ SK KG D+ KY AR+L K I KIR++Y +S
Sbjct: 311 SVTWLAYYRDTVNDQTKYMYPAAQSKFKGLHDFLKYSKARELKKHIMKIRKDYHGKMRSP 370
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
E+ RQ A Y ID LALR G EKD D+ADTVGCCSLRVEHI+
Sbjct: 371 EIVDRQLGTATYLIDFLALRVGGEKDADEADTVGCCSLRVEHIKF 415
>gi|76156808|gb|AAX27935.2| SJCHGC03473 protein [Schistosoma japonicum]
Length = 238
Score = 352 bits (903), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 171/222 (77%), Positives = 196/222 (88%)
Query: 190 LNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALR 249
LNPSS+LKGEKDW+KYETAR L K I+KIR +Y+AD+K KEMRIRQRAVALYFIDKLALR
Sbjct: 1 LNPSSRLKGEKDWKKYETARCLHKVIDKIRADYRADFKHKEMRIRQRAVALYFIDKLALR 60
Query: 250 AGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFK 309
AGNEKDED+ADTVGCCSLR EHI+LHEE +G+PYVV FDFLGKDSIRY N V V KRVFK
Sbjct: 61 AGNEKDEDEADTVGCCSLRYEHIKLHEELNGQPYVVEFDFLGKDSIRYQNSVSVPKRVFK 120
Query: 310 NLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPD 369
N++LF++NKK +DDLFDRLNTSVLN++L ELM+GLTAKVFRTYNAS TL++QL L +PD
Sbjct: 121 NVKLFLKNKKENDDLFDRLNTSVLNQYLRELMDGLTAKVFRTYNASRTLEEQLERLTNPD 180
Query: 370 FSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
K+LAYNRANRAVAVLCNHQRSVPKS KSM NL++K+
Sbjct: 181 DPPHAKLLAYNRANRAVAVLCNHQRSVPKSFAKSMENLQKKV 222
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/88 (84%), Positives = 82/88 (93%)
Query: 503 LNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALR 562
LNPSS+LKGEKDW+KYETAR L K I+KIR +Y+AD+K KEMRIRQRAVALYFIDKLALR
Sbjct: 1 LNPSSRLKGEKDWKKYETARCLHKVIDKIRADYRADFKHKEMRIRQRAVALYFIDKLALR 60
Query: 563 AGNEKDEDQADTVGCCSLRVEHIQLHEE 590
AGNEKDED+ADTVGCCSLR EHI+LHEE
Sbjct: 61 AGNEKDEDEADTVGCCSLRYEHIKLHEE 88
>gi|219121233|ref|XP_002185844.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582693|gb|ACI65314.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 594
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 214/520 (41%), Positives = 313/520 (60%), Gaps = 38/520 (7%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEY-----TTKEAFNTNFMKDWRKSMTEKERAVI 55
M G+ ++L+ EE ATF+A M T + F NF D+R+ + +K ++
Sbjct: 39 MMYDGQPVELTPIQEEAATFFAAMDPEGMHLGNPKTGKIFIKNFFADFREILGKKH--IV 96
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
+ KCDF + + ++ RKA++ EE+K K++ ++G +DGH E++GNF
Sbjct: 97 KEFKKCDFEPIRKHLNEQKIIRKAITDEERKANKEDRSQTLHQFGFSIVDGHIERVGNFN 156
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPP-GHKWKEVRHDNQVTWL 174
+EPPG FRGRGEHPKMGKLK RV E + +N S+ + VPP P GH W +VRHD + WL
Sbjct: 157 MEPPGAFRGRGEHPKMGKLKSRVLPEQVSLNLSECAPVPPCPVPGHAWSDVRHDPRGQWL 216
Query: 175 ASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIR 234
A+W EN+ Q KY+ L S KG+ D KY A L K+I KIR++Y+ D KSK+M ++
Sbjct: 217 ATWKENINNQSKYMQLAAQSSFKGKSDRSKYSKAGLLCKNIEKIRKSYKKDLKSKDMEVK 276
Query: 235 QRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEEKDGK-PYVVCFDFLGK 292
Q A A + ID+LALR G EKD D +ADTVGCCSLRVEH+ +G + +FLGK
Sbjct: 277 QLATATWVIDRLALRVGGEKDTDEEADTVGCCSLRVEHLHFDPNGEGGDSKEIELEFLGK 336
Query: 293 DSIRY----------YNEV-PVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELM 341
DS+ + YN+ + +V+ NL+ F + KK S+++F +N ++LN HL + M
Sbjct: 337 DSMLFKQTIDFGATLYNDSNGLGAQVYDNLKSFCKKKKSSEEVFHVINPTMLNNHLKQFM 396
Query: 342 EGLTAKVFRTYNASITLQQQLNEL-MDP---DFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+GL+AKVFRTYNAS TLQ +L + + P + + +EK++ YN ANR VA+LCNHQRSV
Sbjct: 397 DGLSAKVFRTYNASKTLQTELRKYEVSPAWRNLTASEKVVEYNNANREVAILCNHQRSVS 456
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLL---- 453
K+ + + N+ K+ K+ K + + AGE+ + KK+ EQ++
Sbjct: 457 KAQETQLENITAKVG-MLKKQKKDLKKILKLLTAGEADKIP-TKKSPQTMTDEQVVKKIE 514
Query: 454 -------KLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
K+E+ K++NK ++LGTSK+NY+DPRISV W
Sbjct: 515 AWNGKISKMEMDLKHKDDNKEVSLGTSKINYMDPRISVAW 554
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 74/110 (67%), Gaps = 3/110 (2%)
Query: 479 DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
DPR WLA+W EN+ Q KY+ L S KG+ D KY A L K+I KIR++Y+ D
Sbjct: 210 DPR--GQWLATWKENINNQSKYMQLAAQSSFKGKSDRSKYSKAGLLCKNIEKIRKSYKKD 267
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQL 587
KSK+M ++Q A A + ID+LALR G EKD D +ADTVGCCSLRVEH+
Sbjct: 268 LKSKDMEVKQLATATWVIDRLALRVGGEKDTDEEADTVGCCSLRVEHLHF 317
>gi|399217729|emb|CCF74616.1| unnamed protein product [Babesia microti strain RI]
Length = 706
Score = 351 bits (900), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 210/537 (39%), Positives = 295/537 (54%), Gaps = 60/537 (11%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GKE+KL+ +AEEIAT + + EY K F NF K ++ L CDF
Sbjct: 160 NGKELKLNSEAEEIATMWCTTLGTEYENKPIFRKNFWKTFKSKFPTLHPIKKAKLESCDF 219
Query: 64 RKMHAYF-------VQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRI 116
+ Y Q E + EK+ +K + + + +D +EK+ F++
Sbjct: 220 TAIKNYLDNKKLKAAQDLENDRESVLAEKEALKRAKKELELPFTYALVDNIREKVSGFKV 279
Query: 117 EPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPP---PPPGHKWKEVRHDNQVTW 173
EPPGLFRGRGEHPK G K+R+ D+ IN +K + VP P G+ W +V H+N +TW
Sbjct: 280 EPPGLFRGRGEHPKQGLWKQRIIPTDVKINIAKTAPVPKAIYPLNGYCWNDVVHENSLTW 339
Query: 174 LASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRI 233
LA + + +Q Q+KY+ L+ SK KG D+ KYE AR+L I IR+ Y+ +S ++
Sbjct: 340 LAYYKDTIQDQIKYMYLSAQSKFKGLNDFLKYEKARRLKTCITNIRDGYRQKLRSDDLVD 399
Query: 234 RQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGK 292
+Q A Y ID LALR G+EKD D +ADTVGCCSLRVEHI + D + DFLGK
Sbjct: 400 KQLGTATYLIDFLALRVGSEKDTDEEADTVGCCSLRVEHITFDKLTD----TINLDFLGK 455
Query: 293 DSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTY 352
DSIRY N V V+ F NL F ++KK +D+FD+++T+ LN +L EL+ GL+AKVFRTY
Sbjct: 456 DSIRYTNSVKVDHYAFTNLMEFCKDKKPDEDIFDKISTAKLNDYLKELLPGLSAKVFRTY 515
Query: 353 NASITLQQQL------------------NELMDPDFSEAEKIL-AYNRANRAVAVLCNHQ 393
NAS TL+ L NE++ + +++L YN ANR VA+LCNHQ
Sbjct: 516 NASATLEACLDLLKLEEGTLVATVKDEGNEVLSVNCGSVDELLHYYNHANRRVAILCNHQ 575
Query: 394 RSVPKSHDKSMGN--LKEKI-SNKRKQVKDAERALKDAKKAGESKAMTDKKKTALG---- 446
R+VPK H + LKE I K KD + L + K +S MT K G
Sbjct: 576 RTVPKLHQATQKKMMLKENILEEDLKMCKDYIKHLNEGSK--KSFCMTPKLNDLKGNPRK 633
Query: 447 -----------------RLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+K+ + KL+++ ++NKT+ALGTSK+NY+DPRI++ +
Sbjct: 634 APFKEGAKVEALEKKVENIKKNISKLKLKIKIHDDNKTVALGTSKINYMDPRITIAF 690
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 73/111 (65%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
S+TWLA + + +Q Q+KY+ L+ SK KG D+ KYE AR+L I IR+ Y+ +S
Sbjct: 336 SLTWLAYYKDTIQDQIKYMYLSAQSKFKGLNDFLKYEKARRLKTCITNIRDGYRQKLRSD 395
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEEKD 592
++ +Q A Y ID LALR G+EKD D +ADTVGCCSLRVEHI + D
Sbjct: 396 DLVDKQLGTATYLIDFLALRVGSEKDTDEEADTVGCCSLRVEHITFDKLTD 446
>gi|300121797|emb|CBK22371.2| unnamed protein product [Blastocystis hominis]
Length = 575
Score = 351 bits (900), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 207/545 (37%), Positives = 299/545 (54%), Gaps = 82/545 (15%)
Query: 5 GKEMKLSQDAEEIATFYARMIE-----HEYTTKEAFNTNFMKDWRKSMTEKERAVITDLS 59
GK + L+ + EEIAT YA++ + + T FN NF +R+++ + + +
Sbjct: 18 GKPVALTPEQEEIATLYAQVGDDAIQLRDPKTAAVFNANFFSFFREALGAD--SPVRTMD 75
Query: 60 KCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPP 119
KCDF + A+ + ++R S EEK++ + G +DG+ +K+GN+ IEPP
Sbjct: 76 KCDFSAIRAHLEAQRKQRVKTSAEEKQQQQ-------LRMGYMLVDGNCQKVGNYVIEPP 128
Query: 120 GLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWT 178
LFRGRG HP+MG +K RV E +++N + VP P PGH ++ + WLA W
Sbjct: 129 SLFRGRGMHPRMGSVKMRVIPEQVLLNVDLNMAVPACPMPGHNYESIVCKKDTLWLAKWE 188
Query: 179 ENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+N+ G KY +N S LKG+ D +KYE AR+L + I KIR D KS + + +Q A
Sbjct: 189 DNL-GHGKYCGVNASCYLKGQNDMEKYEIARRLKRFIRKIRSTVLRDLKSDDKKEKQLAT 247
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
A++ IDKLALR GNEK ED+ADTVGCCSLRVEH+ ++ + DFL KDS+ Y+
Sbjct: 248 AIWIIDKLALRVGNEKSEDEADTVGCCSLRVEHLSFADD-----CTLTLDFLAKDSMPYH 302
Query: 299 NEVPVE-----KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
+ ++ K VFKNL+ F + K DD+FD L+TS LN L++ M GLTAKVFRTYN
Sbjct: 303 QTIQLDQYEGGKLVFKNLKSFCKAKSPKDDVFDLLSTSSLNARLTQFMPGLTAKVFRTYN 362
Query: 354 ASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN 413
AS+TL++QL+ S E +L YN ANR VA+LCNHQRS+PK+ D++ + +I
Sbjct: 363 ASVTLEEQLHSTYPAGTSVEEMVLQYNDANREVAILCNHQRSLPKNWDQTNAKKRGQIEL 422
Query: 414 KRKQVKDAERALKDAK-------------------------------------------- 429
++Q + + L+D +
Sbjct: 423 LQRQTDELRQMLRDVRAQKPVELLPEAYWAPVKKEEVPEDASEEERKQIKEKHDERVAER 482
Query: 430 -------KAGESKAMTDKKKTALG-RLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPR 481
K+ ++A +K+ A RL + LKL D E NK +ALGTSK+NY+DPR
Sbjct: 483 AQYLHLFKSQPTEAQVEKRLEAYSKRLADGELKLR----DMESNKLVALGTSKINYMDPR 538
Query: 482 ISVTW 486
I+V W
Sbjct: 539 ITVAW 543
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
Query: 486 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 545
WLA W +N+ G KY +N S LKG+ D +KYE AR+L + I KIR D KS + +
Sbjct: 183 WLAKWEDNL-GHGKYCGVNASCYLKGQNDMEKYEIARRLKRFIRKIRSTVLRDLKSDDKK 241
Query: 546 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
+Q A A++ IDKLALR GNEK ED+ADTVGCCSLRVEH+ ++
Sbjct: 242 EKQLATAIWIIDKLALRVGNEKSEDEADTVGCCSLRVEHLSFADD 286
>gi|323449565|gb|EGB05452.1| hypothetical protein AURANDRAFT_70313 [Aureococcus anophagefferens]
Length = 658
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 205/520 (39%), Positives = 290/520 (55%), Gaps = 53/520 (10%)
Query: 5 GKEMKLSQDAEEIATFYARMIEH------EYTTKEAFNTNFMKDWRKSMTEKERAVITDL 58
G + L+ EE+ATFYA M E +E F NF DW K + + I
Sbjct: 139 GVPISLTPYQEELATFYAAMPEDGPQLNVSGGQREIFQRNFWDDWHKVLGKSH--AIKSF 196
Query: 59 SKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEP 118
KCDF + + + ++A S EK ++ + G +D H EK+GNFR+EP
Sbjct: 197 DKCDFSDISKHLDRLKFVKRAASDAEKVVARELRDDCQLRSGYAILDDHLEKVGNFRMEP 256
Query: 119 PGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPP-----GHKWKEVRHDNQVTW 173
P LFRGRG+HPK G +K RV+ + + INC PPP G W E++HD+ VTW
Sbjct: 257 PSLFRGRGKHPKTGVVKLRVEPDQVSINCGASR----PPPICLELGRSWGEIKHDDTVTW 312
Query: 174 LASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRI 233
L++W ENV KY+ML +S LKG+ D++K++ A +L I ++R +Y + KSK+ +
Sbjct: 313 LSTWHENVMQSNKYVMLAANSSLKGKSDFKKFQKAMQLKGCIERVRHDYHKNLKSKDRHL 372
Query: 234 RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKD 293
+Q+A ++ ID LALR G EK E++ADTVGCCSLRVEH H K GK V +FLGKD
Sbjct: 373 KQQATTMWLIDTLALRVGGEKSEEEADTVGCCSLRVEHFTFH--KTGKD--VDLEFLGKD 428
Query: 294 SIRYYNEVPVE------KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAK 347
SI + + ++ + N++ +KK ++ +F+ + + LN HLS +M GLTAK
Sbjct: 429 SILFKQSIDFAGFDEHGQQAYDNIREMCRSKKKNEQVFELIEPTSLNAHLSSIMPGLTAK 488
Query: 348 VFRTYNASITLQQQLNELMDPDF-------SEAEKILAYNRANRAVAVLCNHQRSVPKSH 400
VFRTYNAS TLQ QL PD S +K++AYN ANR VA+LCNHQR+V +
Sbjct: 489 VFRTYNASETLQNQL-----PDAEHVIEMRSIGDKLIAYNEANRIVAILCNHQRTVSAAA 543
Query: 401 DKSMGNLKEKISNKRKQ------------VKDAERALKDAKKAGESKAMTDKKKTA--LG 446
+ EK+ ++Q +K E +A + D+K + +
Sbjct: 544 ATGLEAQAEKLEQTQEQKIAATAAYEAATIKKREANKSKQAEAHRFSKLPDEKDVSRRID 603
Query: 447 RLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
E++ KLE+ +KEENK ++LGTSK NYLDPRISV W
Sbjct: 604 IWTEKIKKLEIDLRNKEENKEVSLGTSKANYLDPRISVAW 643
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 86/134 (64%), Gaps = 1/134 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL++W ENV KY+ML +S LKG+ D++K++ A +L I ++R +Y + KSK
Sbjct: 309 TVTWLSTWHENVMQSNKYVMLAANSSLKGKSDFKKFQKAMQLKGCIERVRHDYHKNLKSK 368
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE-KDEKKIYNKTQ 601
+ ++Q+A ++ ID LALR G EK E++ADTVGCCSLRVEH H+ KD +
Sbjct: 369 DRHLKQQATTMWLIDTLALRVGGEKSEEEADTVGCCSLRVEHFTFHKTGKDVDLEFLGKD 428
Query: 602 RAKFRWAIDMATAD 615
F+ +ID A D
Sbjct: 429 SILFKQSIDFAGFD 442
>gi|313219335|emb|CBY16450.1| unnamed protein product [Oikopleura dioica]
Length = 325
Score = 349 bits (895), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 183/303 (60%), Positives = 233/303 (76%), Gaps = 8/303 (2%)
Query: 189 MLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLAL 248
MLN +S++KGEKDW KYE ARKL I ++R Y+AD +SK M RQRAVA+YFIDKLAL
Sbjct: 1 MLNANSRIKGEKDWLKYEKARKLKDIIGEVRRTYEADLQSKMMADRQRAVAMYFIDKLAL 60
Query: 249 RAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRV 307
RAGNEKD E+ ADTVGCCSLRVEH++ +++ YV+ FDFLGKDS+RY+N V KRV
Sbjct: 61 RAGNEKDTEEAADTVGCCSLRVEHVKGEKQQ----YVIEFDFLGKDSMRYHNFTQVSKRV 116
Query: 308 FKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMD 367
FKN+++F ENK G D+LFDRL+T LNKHL+ +M+GLTAKVFRTYNAS TLQ+QL+E
Sbjct: 117 FKNVRIFCENKSGEDELFDRLDTGRLNKHLNSIMDGLTAKVFRTYNASKTLQEQLDETTK 176
Query: 368 PDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKD 427
D S AE +L YN ANR VA+LCNH+R+ PK+ D M +EKIS+K +++K+ ++ +K
Sbjct: 177 KDLSVAEYVLTYNNANRQVAILCNHKRTAPKTFDDQMKKAEEKISDKEEKIKEKKKEVKA 236
Query: 428 AKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWL 487
AKK GE + KKK L RL++QL+KL+ +TD+EENK IALGTSKLNYLDPRI++ W
Sbjct: 237 AKKNGED---SSKKKQQLARLEDQLIKLKCAKTDREENKEIALGTSKLNYLDPRITIGWA 293
Query: 488 ASW 490
W
Sbjct: 294 KKW 296
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 82/114 (71%), Gaps = 11/114 (9%)
Query: 502 MLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLAL 561
MLN +S++KGEKDW KYE ARKL I ++R Y+AD +SK M RQRAVA+YFIDKLAL
Sbjct: 1 MLNANSRIKGEKDWLKYEKARKLKDIIGEVRRTYEADLQSKMMADRQRAVAMYFIDKLAL 60
Query: 562 RAGNEKD-EDQADTVGCCSLRVEHIQLHEE----------KDEKKIYNKTQRAK 604
RAGNEKD E+ ADTVGCCSLRVEH++ ++ KD + +N TQ +K
Sbjct: 61 RAGNEKDTEEAADTVGCCSLRVEHVKGEKQQYVIEFDFLGKDSMRYHNFTQVSK 114
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
K+YNKTQR KF WAI MA +DF F
Sbjct: 302 KVYNKTQRDKFAWAIAMAGSDFSF 325
>gi|317447685|emb|CBK00914.1| topoisomerase 1 [Fusarium solani]
Length = 480
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 175/313 (55%), Positives = 219/313 (69%), Gaps = 10/313 (3%)
Query: 110 KIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDN 169
K+GNFR+EPPGLFRGRGEHPK G++K RV E I IN K +K+P PP GH+WK V+HD
Sbjct: 2 KVGNFRVEPPGLFRGRGEHPKTGRVKNRVTPEQITINIGKGAKIPDPPKGHQWKAVQHDQ 61
Query: 170 QVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 229
+ TWLA W EN+ KY+ML +S +KG+ D++K+E AR+L K I++IR++Y + KS+
Sbjct: 62 KATWLAMWQENINNNYKYVMLGAASDIKGQSDFKKFEKARELKKHIDRIRKDYTKELKSE 121
Query: 230 EMRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFD 288
M RQRA A+Y ID+LALRAGNEKD E++ADTVGCCSL+ EHI L P V FD
Sbjct: 122 VMADRQRATAMYLIDRLALRAGNEKDTENEADTVGCCSLKYEHITLEP-----PNKVTFD 176
Query: 289 FLGKDSIRYYNEVPVEKRVFKNLQLFVENKKG-SDDLFDRLNTSVLNKHLSELMEGLTAK 347
FLGKDSI Y VE +VFKNL+LF + K DDLFDRL T+ LNKHL+ M GLTAK
Sbjct: 177 FLGKDSIPYRETAHVEPQVFKNLKLFKKAPKTKGDDLFDRLTTTQLNKHLTNYMPGLTAK 236
Query: 348 VFRTYNASITLQQQLNELM-DPDF--SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSM 404
VFRTYNAS T+ + L L DP S AEK+ YN NR VA+LCNH+R+V H++ M
Sbjct: 237 VFRTYNASFTMSELLKGLSKDPRSRGSVAEKVKLYNDCNREVAILCNHKRTVGAGHEQQM 296
Query: 405 GNLKEKISNKRKQ 417
L ++I R Q
Sbjct: 297 QKLGDRIKGLRYQ 309
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/105 (57%), Positives = 80/105 (76%), Gaps = 1/105 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ KY+ML +S +KG+ D++K+E AR+L K I++IR++Y + KS+
Sbjct: 63 ATWLAMWQENINNNYKYVMLGAASDIKGQSDFKKFEKARELKKHIDRIRKDYTKELKSEV 122
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQL 587
M RQRA A+Y ID+LALRAGNEKD E++ADTVGCCSL+ EHI L
Sbjct: 123 MADRQRATAMYLIDRLALRAGNEKDTENEADTVGCCSLKYEHITL 167
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 438 TDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
DK A+ +L E++ LE Q D++ NK +ALGTSK+NY+DPR++V +
Sbjct: 415 VDKFIKAIEKLDERVKVLETQAEDRDGNKEVALGTSKINYIDPRLTVVF 463
>gi|145530640|ref|XP_001451092.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124418736|emb|CAK83695.1| unnamed protein product [Paramecium tetraurelia]
Length = 596
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 211/506 (41%), Positives = 292/506 (57%), Gaps = 35/506 (6%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+++ EE+ T++A+ I Y KE + NF M K L K DF
Sbjct: 70 GKLITLTEEQEELCTYWAQSIGSPYENKEIYRKNF----ESLMQTKFEGF--QLDKADFT 123
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
K+ Y Q+ R S E+KK+ K E + YG +DG E++GN+ +E P LF+G
Sbjct: 124 KIKEYLEQQRLLRLNKSDEQKKQEKLERDQRELFYGYALVDGCLERVGNYTLEQPTLFKG 183
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENV-- 181
RGEHPK G LK R+ E++ +N S + VP PGH W ++ H N VTWL S+ ++
Sbjct: 184 RGEHPKAGLLKARIFPEELTVNLSTQAPVPQCKLPGHSWGKIVHRNDVTWLFSYVDSSIR 243
Query: 182 QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALY 241
+ KY+ +S+ K D +KYE AR+L I++IRENY +S ++ RQ A Y
Sbjct: 244 KDNHKYVQFAATSRFKQMNDKRKYEKARRLKNQIDQIRENYTKKLQSDSIKERQLGTATY 303
Query: 242 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEV 301
IDKLALR GNEKDED+ADTVGCCSLRVEHI+L E+ VV FDFLGKDS+RY NEV
Sbjct: 304 LIDKLALRVGNEKDEDEADTVGCCSLRVEHIKLKEDD-----VVAFDFLGKDSMRYNNEV 358
Query: 302 PVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
+ +++KNL+LF++ K+ D+LF ++ LN L + MEGLTAKVFRTYNAS TLQQQ
Sbjct: 359 KLAHQIWKNLKLFIKGKQPEDNLFSDISVDDLNDFLKKQMEGLTAKVFRTYNASFTLQQQ 418
Query: 362 LNELMDPD-FSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKD 420
L+ D S +K+ Y+ AN+ VA+LCNHQ+++ K + + + K+ + +++
Sbjct: 419 LDLGGKLDGHSVQQKVDFYDNANKQVAILCNHQKTISKQFELTKKKINTKLECMKTYIQE 478
Query: 421 AERALK----------DAKKAGESK----------AMTDKKKTALGRLKEQLLKLEVQET 460
E+ K + G K DK K + + +E+ K
Sbjct: 479 LEQHYKKKNPNEYEEEVQLEEGSQKKNSIFIKKFPGQHDKIKQTIQKTQEKYQKELKGLE 538
Query: 461 DKEENKTIALGTSKLNYLDPRISVTW 486
KEENK IALGTSK NY DPRISV +
Sbjct: 539 KKEENKEIALGTSKTNYNDPRISVAF 564
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 75/112 (66%), Gaps = 2/112 (1%)
Query: 481 RISVTWLASWTENV--QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
R VTWL S+ ++ + KY+ +S+ K D +KYE AR+L I++IRENY
Sbjct: 228 RNDVTWLFSYVDSSIRKDNHKYVQFAATSRFKQMNDKRKYEKARRLKNQIDQIRENYTKK 287
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
+S ++ RQ A Y IDKLALR GNEKDED+ADTVGCCSLRVEHI+L E+
Sbjct: 288 LQSDSIKERQLGTATYLIDKLALRVGNEKDEDEADTVGCCSLRVEHIKLKED 339
>gi|380714819|gb|AFE02782.1| topoisomerase I, partial [Bembidion coxendix]
Length = 245
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 197/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q++DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIEDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143667|gb|AFF58494.1| topoisomerase I, partial [Bembidion concretum]
Length = 244
Score = 346 bits (887), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143815|gb|AFF58568.1| topoisomerase I, partial [Bembidion rawlinsi]
Length = 241
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|380714823|gb|AFE02784.1| topoisomerase I, partial [Bembidion lapponicum]
Length = 246
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 197/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q++DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIEDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143623|gb|AFF58472.1| topoisomerase I, partial [Bembidion articulatum]
Length = 246
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|189094107|gb|ACD75881.1| topoisomerase I [Bembidion inaequale]
gi|380714815|gb|AFE02780.1| topoisomerase I, partial [Bembidion bowditchii]
gi|381143785|gb|AFF58553.1| topoisomerase I, partial [Bembidion paraenulum]
Length = 247
Score = 345 bits (886), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 197/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q++DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIEDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143929|gb|AFF58625.1| topoisomerase I, partial [Sinechostictus elongatus]
Length = 247
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D S AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDSVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVIHDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL++LEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIRLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143699|gb|AFF58510.1| topoisomerase I, partial [Bembidion fortestriatum]
Length = 247
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143701|gb|AFF58511.1| topoisomerase I, partial [Bembidion foveolatum]
gi|381143821|gb|AFF58571.1| topoisomerase I, partial [Bembidion opulentum riverinae]
Length = 247
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143687|gb|AFF58504.1| topoisomerase I, partial [Bembidion ephippium]
Length = 244
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNGDDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGES-----KAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ ++ K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKNGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143607|gb|AFF58464.1| topoisomerase I, partial [Bembidion (Omotaphus) sp. 1 DRM-2012]
Length = 247
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143803|gb|AFF58562.1| topoisomerase I, partial [Bembidion poculare]
Length = 244
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143737|gb|AFF58529.1| topoisomerase I, partial [Bembidion kuprianovii]
Length = 245
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143621|gb|AFF58471.1| topoisomerase I, partial [Bembidion aratum]
gi|381143681|gb|AFF58501.1| topoisomerase I, partial [Bembidion dorsale]
Length = 247
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143645|gb|AFF58483.1| topoisomerase I, partial [Bembidion castor]
Length = 230
Score = 345 bits (885), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|189094099|gb|ACD75877.1| topoisomerase I [Bembidion concolor]
gi|380714813|gb|AFE02779.1| topoisomerase I, partial [Bembidion californicum]
gi|381143775|gb|AFF58548.1| topoisomerase I, partial [Bembidion nigrum]
Length = 247
Score = 345 bits (885), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143817|gb|AFF58569.1| topoisomerase I, partial [Bembidion recticolle]
Length = 247
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143849|gb|AFF58585.1| topoisomerase I, partial [Bembidion semistriatum]
Length = 241
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143783|gb|AFF58552.1| topoisomerase I, partial [Bembidion octomaculatum]
Length = 247
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIXDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143659|gb|AFF58490.1| topoisomerase I, partial [Bembidion clemens]
gi|381143757|gb|AFF58539.1| topoisomerase I, partial [Bembidion maorinum]
Length = 247
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143801|gb|AFF58561.1| topoisomerase I, partial [Bembidion platynoides]
Length = 242
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143697|gb|AFF58509.1| topoisomerase I, partial [Bembidion flohri]
gi|381143887|gb|AFF58604.1| topoisomerase I, partial [Bembidion varium]
Length = 247
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143807|gb|AFF58564.1| topoisomerase I, partial [Bembidion proprium]
Length = 244
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLR+EHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRIEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143779|gb|AFF58550.1| topoisomerase I, partial [Bembidion nitidum]
Length = 243
Score = 345 bits (884), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143635|gb|AFF58478.1| topoisomerase I, partial [Bembidion breve]
Length = 240
Score = 345 bits (884), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKTLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143663|gb|AFF58492.1| topoisomerase I, partial [Bembidion commotum]
gi|381143743|gb|AFF58532.1| topoisomerase I, partial [Bembidion lenae]
Length = 245
Score = 345 bits (884), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143631|gb|AFF58476.1| topoisomerase I, partial [Bembidion biguttatum]
Length = 247
Score = 345 bits (884), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143713|gb|AFF58517.1| topoisomerase I, partial [Bembidion grandiceps]
Length = 247
Score = 345 bits (884), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQINDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143765|gb|AFF58543.1| topoisomerase I, partial [Bembidion mexicanum]
Length = 246
Score = 345 bits (884), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143823|gb|AFF58572.1| topoisomerase I, partial [Bembidion rogersi]
Length = 246
Score = 345 bits (884), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143671|gb|AFF58496.1| topoisomerase I, partial [Bembidion constricticolle]
gi|381143675|gb|AFF58498.1| topoisomerase I, partial [Bembidion cupreostriatum]
gi|381143863|gb|AFF58592.1| topoisomerase I, partial [Bembidion (Notaphus) nr. ugartei
DRM-2012]
Length = 247
Score = 345 bits (884), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143835|gb|AFF58578.1| topoisomerase I, partial [Bembidion sarpedon]
Length = 246
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|189094091|gb|ACD75873.1| topoisomerase I [Bembidion umbratum]
Length = 247
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143751|gb|AFF58536.1| topoisomerase I, partial [Bembidion lugubre]
gi|381143791|gb|AFF58556.1| topoisomerase I, partial [Bembidion pernotum]
Length = 247
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|189094089|gb|ACD75872.1| topoisomerase I [Bembidion transversale]
Length = 247
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143843|gb|AFF58582.1| topoisomerase I, partial [Bembidion scopulinum]
Length = 237
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143721|gb|AFF58521.1| topoisomerase I, partial [Bembidion horni]
gi|381143771|gb|AFF58546.1| topoisomerase I, partial [Bembidion mundum]
Length = 247
Score = 344 bits (883), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNGDDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143825|gb|AFF58573.1| topoisomerase I, partial [Bembidion rolandi]
Length = 228
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 170/226 (75%), Positives = 194/226 (85%), Gaps = 5/226 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W
Sbjct: 181 KKKMLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAW 226
>gi|381143893|gb|AFF58607.1| topoisomerase I, partial [Bembidion vile]
Length = 247
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNGDDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143625|gb|AFF58473.1| topoisomerase I, partial [Bembidion assimile]
Length = 247
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNGDDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143793|gb|AFF58557.1| topoisomerase I, partial [Bembidion persimile]
Length = 241
Score = 344 bits (883), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 197/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q++DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIEDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RL+EQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLREQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143819|gb|AFF58570.1| topoisomerase I, partial [Bembidion ripicola]
Length = 245
Score = 344 bits (883), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L R+KEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERMKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143651|gb|AFF58486.1| topoisomerase I, partial [Bembidion (Plataphus) cf. curtulatum
DRM-2012]
Length = 238
Score = 344 bits (883), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIVDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143601|gb|AFF58461.1| topoisomerase I, partial [Bembidion (Hypsipezum) sp. 1 DRM-2012]
Length = 246
Score = 344 bits (882), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 171/230 (74%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQLNEL D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLNELTXVDDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIGDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143715|gb|AFF58518.1| topoisomerase I, partial [Bembidion grapii]
Length = 240
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|189094093|gb|ACD75874.1| topoisomerase I [Bembidion plagiatum]
gi|381143717|gb|AFF58519.1| topoisomerase I, partial [Bembidion hastii]
gi|381143759|gb|AFF58540.1| topoisomerase I, partial [Bembidion maroccanum]
gi|381143797|gb|AFF58559.1| topoisomerase I, partial [Bembidion planatum]
Length = 247
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIVDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143689|gb|AFF58505.1| topoisomerase I, partial [Bembidion errans]
Length = 235
Score = 344 bits (882), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLR+EHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRIEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143845|gb|AFF58583.1| topoisomerase I, partial [Bembidion sejunctum semiaureum]
Length = 245
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIVDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLVKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143705|gb|AFF58513.1| topoisomerase I, partial [Bembidion gebleri turbatum]
Length = 241
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIVDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143643|gb|AFF58482.1| topoisomerase I, partial [Bembidion carinula]
Length = 246
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/229 (73%), Positives = 196/229 (85%), Gaps = 5/229 (2%)
Query: 267 LRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFD 326
LRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFD
Sbjct: 1 LRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFD 60
Query: 327 RLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAV 386
RLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAV
Sbjct: 61 RLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAV 120
Query: 387 AVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKK 441
A+LCNHQRSVPKSH KSM LKEKI KR+Q++DA++ +KDA++ + + K + DKK
Sbjct: 121 AILCNHQRSVPKSHAKSMEKLKEKIEQKREQIEDAQKQVKDAQRDAKHGSVKEKVVYDKK 180
Query: 442 KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
K L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 229
>gi|189094095|gb|ACD75875.1| topoisomerase I [Bembidion rapidum]
Length = 247
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIVDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLVKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143679|gb|AFF58500.1| topoisomerase I, partial [Bembidion connivens]
Length = 247
Score = 344 bits (882), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RL+EQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLREQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143619|gb|AFF58470.1| topoisomerase I, partial [Bembidion anthracinum]
Length = 246
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|189094101|gb|ACD75878.1| topoisomerase I [Bembidion integrum]
gi|189094103|gb|ACD75879.1| topoisomerase I [Bembidion integrum]
gi|189094113|gb|ACD75884.1| topoisomerase I [Bembidion rufotinctum]
gi|189094115|gb|ACD75885.1| topoisomerase I [Bembidion rufotinctum]
gi|380714831|gb|AFE02788.1| topoisomerase I, partial [Bembidion cheyennense]
Length = 247
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 197/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+++A++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143897|gb|AFF58609.1| topoisomerase I, partial [Bembidion xanthacrum]
Length = 246
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 168/229 (73%), Positives = 196/229 (85%), Gaps = 5/229 (2%)
Query: 267 LRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFD 326
LRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFD
Sbjct: 1 LRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFD 60
Query: 327 RLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAV 386
RLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL +PD + AEKIL+YNRANRAV
Sbjct: 61 RLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNPDDTVAEKILSYNRANRAV 120
Query: 387 AVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKK 441
A+LCNHQR+VPKSH KSM LKEKI KR+Q+++A++ +KDA++ + + K + DKK
Sbjct: 121 AILCNHQRTVPKSHAKSMEKLKEKIEQKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDKK 180
Query: 442 KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
K L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 229
>gi|380714835|gb|AFE02790.1| topoisomerase I, partial [Bembidion arenobilis]
Length = 232
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 197/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+++A++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143773|gb|AFF58547.1| topoisomerase I, partial [Bembidion nigrivestis]
Length = 247
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTSGDDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL++LEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKTLERLKEQLIRLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|380714839|gb|AFE02792.1| topoisomerase I, partial [Bembidion honestum]
Length = 239
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 197/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+++A++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143809|gb|AFF58565.1| topoisomerase I, partial [Bembidion pseudocautum]
Length = 247
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVMETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143763|gb|AFF58542.1| topoisomerase I, partial [Bembidion melanopodum]
gi|381143831|gb|AFF58576.1| topoisomerase I, partial [Bembidion rugosellum]
Length = 247
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143719|gb|AFF58520.1| topoisomerase I, partial [Bembidion hirtipes]
Length = 245
Score = 343 bits (881), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVMETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143735|gb|AFF58528.1| topoisomerase I, partial [Bembidion mimekara]
Length = 247
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQINDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLK+QL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKDQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143755|gb|AFF58538.1| topoisomerase I, partial [Bembidion luridicorne]
Length = 243
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKTLERLKEQLMKLEVMETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143925|gb|AFF58623.1| topoisomerase I, partial [Sinechostictus alesmetana]
Length = 247
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + S AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDSVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+QV DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQVTDAQKQVKDAQRDAKHGSVKEKVIFDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L R+KEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKLLERMKEQLVKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143709|gb|AFF58515.1| topoisomerase I, partial [Bembidion geniculatum]
Length = 247
Score = 343 bits (880), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ D ++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDVQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKTLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143931|gb|AFF58626.1| topoisomerase I, partial [Sinechostictus solarii]
Length = 247
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + S AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDSVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVHDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL++LEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLVRLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143739|gb|AFF58530.1| topoisomerase I, partial [Bembidion laetum]
Length = 246
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/229 (73%), Positives = 194/229 (84%), Gaps = 5/229 (2%)
Query: 267 LRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFD 326
LRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFD
Sbjct: 1 LRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFD 60
Query: 327 RLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAV 386
RLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAV
Sbjct: 61 RLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAV 120
Query: 387 AVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKK 441
A+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKK
Sbjct: 121 AILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKK 180
Query: 442 KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
K L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKMLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 229
>gi|381143655|gb|AFF58488.1| topoisomerase I, partial [Bembidion (Andrewesa) cf. incisum
DRM-2012]
Length = 242
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVMETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143611|gb|AFF58466.1| topoisomerase I, partial [Bembidion actuosum]
Length = 243
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/229 (73%), Positives = 194/229 (84%), Gaps = 5/229 (2%)
Query: 267 LRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFD 326
LRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFD
Sbjct: 1 LRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFD 60
Query: 327 RLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAV 386
RLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAV
Sbjct: 61 RLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAV 120
Query: 387 AVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKK 441
A+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKK
Sbjct: 121 AILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKK 180
Query: 442 KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
K L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 229
>gi|380714837|gb|AFE02791.1| topoisomerase I, partial [Bembidion bellorum]
Length = 243
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADXTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGE-----SKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ +A++ +KDA++ + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIDEAQKQVKDAQRDAKHGSVXEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKXIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143841|gb|AFF58581.1| topoisomerase I, partial [Bembidion scitulum]
Length = 247
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|380714841|gb|AFE02793.1| topoisomerase I, partial [Bembidion louisella]
Length = 245
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ +A++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIDEAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143695|gb|AFF58508.1| topoisomerase I, partial [Bembidion festivum]
Length = 247
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNGDDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ D ++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDVQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143867|gb|AFF58594.1| topoisomerase I, partial [Bembidion sphaeroderum]
Length = 247
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DD F
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDXF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143685|gb|AFF58503.1| topoisomerase I, partial [Bembidion dyschirinum]
gi|381143805|gb|AFF58563.1| topoisomerase I, partial [Bembidion properans]
Length = 246
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVMETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|380714821|gb|AFE02783.1| topoisomerase I, partial [Bembidion balli]
Length = 245
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+ L + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDGLTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q++DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIEDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|380714843|gb|AFE02794.1| topoisomerase I, partial [Bembidion rothfelsi]
Length = 241
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ +A++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIDEAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|189094109|gb|ACD75882.1| topoisomerase I [Bembidion chalceum]
gi|189094111|gb|ACD75883.1| topoisomerase I [Bembidion chalceum]
Length = 247
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ +A++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIDEAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143745|gb|AFF58533.1| topoisomerase I, partial [Bembidion levigatum]
Length = 247
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVMETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143829|gb|AFF58575.1| topoisomerase I, partial [Bembidion rufoplagiatum]
Length = 241
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKTLERLKEQLMKLEVLETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143909|gb|AFF58615.1| topoisomerase I, partial [Bembidion osculans]
Length = 247
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D S AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDSVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ D ++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDVQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLK+QL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKDQLVKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|380714825|gb|AFE02785.1| topoisomerase I, partial [Bembidion levettei]
Length = 246
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q++DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIEDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVLETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143613|gb|AFF58467.1| topoisomerase I, partial [Bembidion aenulum]
Length = 247
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q++DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIEDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVLETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143877|gb|AFF58599.1| topoisomerase I, partial [Bembidion texanum]
Length = 246
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAXDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQISDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143649|gb|AFF58485.1| topoisomerase I, partial [Bembidion (Hoquedela) cf. csikii
DRM-2012]
Length = 243
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/229 (73%), Positives = 194/229 (84%), Gaps = 5/229 (2%)
Query: 267 LRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFD 326
LRVEHI+LH++KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFD
Sbjct: 1 LRVEHIELHDQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFD 60
Query: 327 RLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAV 386
RLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAV
Sbjct: 61 RLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNTDDTVAEKILSYNRANRAV 120
Query: 387 AVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKK 441
A+LCNHQRSVPKSH KSM LKEKI KR+QV DA++ +KDA++ + + K + DKK
Sbjct: 121 AILCNHQRSVPKSHAKSMEKLKEKIEQKREQVTDAQKQVKDAQRDAKHGSVKEKVVYDKK 180
Query: 442 KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
K L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKTLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 229
>gi|381143905|gb|AFF58613.1| topoisomerase I, partial [Bembidion disjunctum]
gi|381143907|gb|AFF58614.1| topoisomerase I, partial [Bembidion erasum]
Length = 247
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D S AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDSVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ D ++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADVQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLK+QL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKDQLVKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143903|gb|AFF58612.1| topoisomerase I, partial [Bembidion castum]
Length = 246
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D S AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDSVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ D ++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADVQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLK+QL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKDQLVKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|380714817|gb|AFE02781.1| topoisomerase I, partial [Bembidion confusum]
Length = 246
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 197/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+++A++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143653|gb|AFF58487.1| topoisomerase I, partial [Bembidion (Philochtemphanes) cf.
exquisitum DRM-2012]
Length = 228
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 168/226 (74%), Positives = 194/226 (85%), Gaps = 5/226 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQ++EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQVDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KK L RLK+QL+KLEVQETD++ENK IALGTSKLNYLDPRISV W
Sbjct: 181 KKKMLERLKDQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAW 226
>gi|381143731|gb|AFF58526.1| topoisomerase I, partial [Bembidion iridescens]
Length = 247
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+ L + + + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDGLTNAEDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA+R +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQISDAQRQVKDAQRDAKHGSVKEKVVHDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143837|gb|AFF58579.1| topoisomerase I, partial [Bembidion sciakyi sciakyi]
Length = 226
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 169/224 (75%), Positives = 193/224 (86%), Gaps = 5/224 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKK 442
+LCNHQRSVPKSH KSM LKEKI KR+QV DA++ +KDA++ + + K + DKKK
Sbjct: 121 ILCNHQRSVPKSHAKSMEKLKEKIEQKREQVADAQKQVKDAQRDAKHGSVKEKVVYDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W
Sbjct: 181 KMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAW 224
>gi|381143885|gb|AFF58603.1| topoisomerase I, partial [Bembidion variegatum]
Length = 246
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVMETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143777|gb|AFF58549.1| topoisomerase I, partial [Bembidion niloticum batesi]
Length = 245
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 168/228 (73%), Positives = 194/228 (85%), Gaps = 5/228 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKK 442
+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 ILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 228
>gi|357467001|ref|XP_003603785.1| DNA topoisomerase I [Medicago truncatula]
gi|355492833|gb|AES74036.1| DNA topoisomerase I [Medicago truncatula]
Length = 789
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 194/429 (45%), Positives = 267/429 (62%), Gaps = 27/429 (6%)
Query: 16 EIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSE 75
E+AT +A + + +Y+ E F NF DWRK + E +I +L CD ++ + + +
Sbjct: 350 EVATMFA-VTDTKYSQNEIFKVNFWNDWRKLLGENH--MIQNLKDCDITPIYDWCQIEKD 406
Query: 76 ERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLK 135
++K MS EKK +K+E ++Y +DG KEK+G+FR+EPPGLF GRGEHPK+GK+K
Sbjct: 407 KKKQMSSAEKKALKEEKMKQEEKYMWAIVDGVKEKVGSFRVEPPGLFIGRGEHPKIGKVK 466
Query: 136 RRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQGQ-VKYIMLNPS 193
RR+ D+ IN K + +P P PG WK + H++ VTWLA W + + + +KY+ L S
Sbjct: 467 RRILPHDVTINIGKYAPIPECPIPGESWK-ITHEDTVTWLAKWCDPIDPKLIKYVWLGAS 525
Query: 194 SKLKGEKDWQKYETARKLAKSINKIR-ENYQADWKSKEMRIRQRAVALYFIDKLALRAGN 252
S LKG+ D +KYE AR L I IR Y +KSK + +Q AVA YFIDKLALRAGN
Sbjct: 526 SSLKGKSDKEKYEKARMLKSYIGNIRAAAYTKGFKSKYITKQQIAVATYFIDKLALRAGN 585
Query: 253 EKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQ 312
EKD+++ADTVGCC+L+VE++ K F+FLGKDSI+Y N V VE V+ +
Sbjct: 586 EKDDEEADTVGCCTLKVENVTAQGHNKLK-----FEFLGKDSIKYENTVEVELPVYNAIL 640
Query: 313 LFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDF-- 370
F ++K DDLFD+L+TS LN HL ELM LTAKVF T+NAS TL + + D+
Sbjct: 641 KFQKDKHPGDDLFDKLDTSKLNAHLKELMPNLTAKVFCTFNASFTLDDMVKSSLRRDYYV 700
Query: 371 ------------SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
AEK+ + +AN+ VA++CNHQRSV KSH + + L EKI +K++
Sbjct: 701 FKLKLNKETKDGDVAEKVYVHRQANKQVAIICNHQRSVSKSHSEQISKLNEKIDELQKEL 760
Query: 419 K-DAERALK 426
K D ERA K
Sbjct: 761 KIDLERAKK 769
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 75/105 (71%), Gaps = 2/105 (1%)
Query: 483 SVTWLASWTENVQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIREN-YQADWK 540
+VTWLA W + + + +KY+ L SS LKG+ D +KYE AR L I IR Y +K
Sbjct: 501 TVTWLAKWCDPIDPKLIKYVWLGASSSLKGKSDKEKYEKARMLKSYIGNIRAAAYTKGFK 560
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
SK + +Q AVA YFIDKLALRAGNEKD+++ADTVGCC+L+VE++
Sbjct: 561 SKYITKQQIAVATYFIDKLALRAGNEKDDEEADTVGCCTLKVENV 605
>gi|381143683|gb|AFF58502.1| topoisomerase I, partial [Bembidion durangoense]
Length = 238
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 197/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+++A++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|189094097|gb|ACD75876.1| topoisomerase I [Bembidion mandibulare]
Length = 247
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELM+GLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLTELMDGLTAKVFRTYNASWTLQQQLDELTNADDTIAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKTLERLKEQLMKLEVMETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143641|gb|AFF58481.1| topoisomerase I, partial [Bembidion caoduroi]
Length = 247
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVMETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143857|gb|AFF58589.1| topoisomerase I, partial [Bembidion solieri]
Length = 245
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 168/228 (73%), Positives = 193/228 (84%), Gaps = 5/228 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKK 442
+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 ILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 228
>gi|381143927|gb|AFF58624.1| topoisomerase I, partial [Sinechostictus dahli]
Length = 247
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + S AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDSVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ +A++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITEAQKQVKDAQRDAKHGSVKEKVVHDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL++LEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLVRLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143875|gb|AFF58598.1| topoisomerase I, partial [Bembidion tetracolum]
Length = 247
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 193/230 (83%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTSADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIVDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRI V W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRIXVAWCKKY 230
>gi|381143813|gb|AFF58567.1| topoisomerase I, partial [Bembidion quadrimaculatum dubitans]
Length = 247
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 193/230 (83%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLXELMEGLTAKVFRTYNASWTLQQQLDELTNGDDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVP SH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPXSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143741|gb|AFF58531.1| topoisomerase I, partial [Bembidion laterale]
Length = 247
Score = 342 bits (876), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 193/230 (83%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNKDDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA + +KDA + + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDANKQVKDAYRDAKHGSVKEKMIHDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143895|gb|AFF58608.1| topoisomerase I, partial [Bembidion wickhami]
Length = 247
Score = 342 bits (876), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK +L RLKEQL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKSLERLKEQLIKLEVLETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143747|gb|AFF58534.1| topoisomerase I, partial [Bembidion liangi]
Length = 245
Score = 342 bits (876), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNEGDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|351698448|gb|EHB01367.1| DNA topoisomerase I, mitochondrial [Heterocephalus glaber]
Length = 716
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 200/488 (40%), Positives = 267/488 (54%), Gaps = 139/488 (28%)
Query: 33 EAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKK------ 86
E +F+ + +T +ER +I L KCDF ++H +FV K+ +A+ +EEK+
Sbjct: 67 EGVRASFVTE----LTVEERCLIKHLDKCDFTEIHRHFVDKAVAWRALPREEKQVGLLGA 122
Query: 87 ----------KIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKR 136
K+K+E E + +E+G C +DG+ EKIGNF+ EPPGLF G G+HPKMG LKR
Sbjct: 123 LCKEWKWLVGKLKEEAEKLEQEFGYCILDGYLEKIGNFKAEPPGLFCGCGDHPKMGMLKR 182
Query: 137 RVQAEDIIINCSK-----------DSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQV 185
R++ ED++INCSK DSK+P PP GH+WKEVR D VTWLA+WTENVQ +
Sbjct: 183 RIRPEDVVINCSKCADQAARLSWRDSKIPEPPAGHQWKEVRSDKTVTWLAAWTENVQNSI 242
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDK 245
KYIMLNPSSKL K
Sbjct: 243 KYIMLNPSSKL------------------------------------------------K 254
Query: 246 LALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
LALR GNEK+E + ADTVGCCSL+VEH++LH + +G
Sbjct: 255 LALRTGNEKEEGETADTVGCCSLQVEHVRLHVDANG-----------------------H 291
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
K VF+NLQLF++NK+ DDLFD+L +QL
Sbjct: 292 KHVFQNLQLFMKNKEPGDDLFDKLT------------------------------KQLRV 321
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
+ + S A KILAYNRANR VA+ HQ+++PK+ +KSM NL+ KI K+ QV +A+
Sbjct: 322 VTRAEDSIATKILAYNRANRVVAIYRGHQQAIPKTFEKSMRNLRTKIQAKKTQVAEAQGE 381
Query: 425 LKDA------KKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
L+ A K G+S ++ +KK+ L +L+EQL+ L + DKEENK +ALG SKLNYL
Sbjct: 382 LRKAEVDHRIKGDGKSTSILEKKQRLLRKLEEQLVHLSTRAIDKEENKQVALGASKLNYL 441
Query: 479 DPRISVTW 486
DPRIS W
Sbjct: 442 DPRISTAW 449
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 60/121 (49%), Gaps = 50/121 (41%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTENVQ +KYIMLNPSSKL
Sbjct: 227 TVTWLAAWTENVQNSIKYIMLNPSSKL--------------------------------- 253
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD-EKKIYNKT 600
KLALR GNEK+E + ADTVGCCSL+VEH++LH + + K ++
Sbjct: 254 ---------------KLALRTGNEKEEGETADTVGCCSLQVEHVRLHVDANGHKHVFQNL 298
Query: 601 Q 601
Q
Sbjct: 299 Q 299
>gi|381143859|gb|AFF58590.1| topoisomerase I, partial [Bembidion (Antiperyphanes) nr. chilense
DRM-2012]
Length = 244
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + EKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVTEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKTLERLKEQLMKLEVLETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143883|gb|AFF58602.1| topoisomerase I, partial [Bembidion trechiforme]
Length = 247
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+ L + + + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDGLTNGEDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA+R +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQISDAQRQVKDAQRDAKHGSVKEKVVHDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143923|gb|AFF58622.1| topoisomerase I, partial [Sinechostictus (Pseudolimnaeum) sp. 3
DRM-2012]
Length = 247
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEHKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + S AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDSVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+QV DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQVTDAQKQVKDAQRDAKHGSVKEKVIFDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L R+KEQL++LEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKLLERMKEQLVRLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143657|gb|AFF58489.1| topoisomerase I, partial [Bembidion chilense]
Length = 247
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + EKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVTEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKTLERLKEQLMKLEVLETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|380714833|gb|AFE02789.1| topoisomerase I, partial [Bembidion antiquum]
Length = 245
Score = 341 bits (875), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ + ++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIDEVQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143933|gb|AFF58627.1| topoisomerase I, partial [Sloaneana lamingtonensis]
Length = 247
Score = 341 bits (875), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 168/226 (74%), Positives = 194/226 (85%), Gaps = 5/226 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT+++NKHL+ELMEGLTAK FRTYNAS TLQQQL+EL + D + EKIL+YNRANRA
Sbjct: 61 DRLNTAIMNKHLNELMEGLTAKTFRTYNASWTLQQQLDELTNSDDTIPEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA+R +KDA+K + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQISDAQRQVKDAQKDAKHGSVKEKVIYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KK L RLK+QL++LEVQETD++ENK+IALGTSKLNYLDPRISV W
Sbjct: 181 KKKMLERLKDQLVRLEVQETDRDENKSIALGTSKLNYLDPRISVAW 226
>gi|381143661|gb|AFF58491.1| topoisomerase I, partial [Bembidion coloradense]
Length = 235
Score = 341 bits (874), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 168/228 (73%), Positives = 193/228 (84%), Gaps = 5/228 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKK 442
+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 ILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 228
>gi|381143691|gb|AFF58506.1| topoisomerase I, partial [Bembidion escherichi]
Length = 246
Score = 341 bits (874), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDP ISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPXISVAWCKKY 230
>gi|381143627|gb|AFF58474.1| topoisomerase I, partial [Bembidion astrabadense]
Length = 244
Score = 341 bits (874), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 168/229 (73%), Positives = 193/229 (84%), Gaps = 5/229 (2%)
Query: 267 LRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFD 326
LRVEHI+LHE KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFD
Sbjct: 1 LRVEHIELHEHKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFD 60
Query: 327 RLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAV 386
RLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAV
Sbjct: 61 RLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAV 120
Query: 387 AVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKK 441
A+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKK
Sbjct: 121 AILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKK 180
Query: 442 KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
K L RL+EQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKMLERLREQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 229
>gi|381143595|gb|AFF58458.1| topoisomerase I, partial [Bembidarenas reicheellum]
Length = 243
Score = 341 bits (874), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 167/230 (72%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+E+K DDLF
Sbjct: 1 SLRVEHIELHEKKDDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMESKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D S EKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASYTLQQQLDELTNEDDSITEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGES-----KAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA+R +KDA++ ++ K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQIADAQRQVKDAQRDAKNGSVKEKVIFDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L R+K+QL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKQLERMKDQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143725|gb|AFF58523.1| topoisomerase I, partial [Bembidion immaturum]
Length = 247
Score = 341 bits (874), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ LKDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQLKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLK+QL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKTLERLKDQLMKLEVLETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143789|gb|AFF58555.1| topoisomerase I, partial [Bembidion pedicellatum]
Length = 245
Score = 341 bits (874), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 168/228 (73%), Positives = 193/228 (84%), Gaps = 5/228 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNGDDTVAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKK 442
+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 ILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 228
>gi|189094105|gb|ACD75880.1| topoisomerase I [Bembidion inaequale]
Length = 247
Score = 340 bits (873), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q++DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIEDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVLETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143879|gb|AFF58600.1| topoisomerase I, partial [Bembidion tigrinum]
Length = 246
Score = 340 bits (873), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDG+ YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGREYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKLVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDP ISV W +
Sbjct: 181 KKKMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPXISVAWCKKY 230
>gi|380714829|gb|AFE02787.1| topoisomerase I, partial [Bembidion bifossulatum]
Length = 245
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 167/228 (73%), Positives = 195/228 (85%), Gaps = 5/228 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKK 442
+LCNHQRSVPKSH KSM LKEKI KR+Q+++A++ +KDA++ + + K + DKKK
Sbjct: 121 ILCNHQRSVPKSHAKSMEKLKEKIEQKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KMLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 228
>gi|381143839|gb|AFF58580.1| topoisomerase I, partial [Bembidion scintillans]
Length = 245
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 167/228 (73%), Positives = 193/228 (84%), Gaps = 5/228 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHI+LHE+KDGK +VV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RVEHIELHEQKDGKEFVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKK 442
+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 ILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KMLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 228
>gi|381143855|gb|AFF58588.1| topoisomerase I, partial [Bembidion siticum]
Length = 244
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/228 (73%), Positives = 192/228 (84%), Gaps = 5/228 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKK 442
+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA+K + + K + DKKK
Sbjct: 121 ILCNHQRSVPKSHAKSMEKLKEKIEQKREQISDAQKQVKDAQKDAKHGSVKEKVVYDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK ALGTSKLNYLDPRISV W +
Sbjct: 181 KMLERLKEQLIKLEVQETDRDENKAXALGTSKLNYLDPRISVAWCKKY 228
>gi|381143833|gb|AFF58577.1| topoisomerase I, partial [Bembidion salinarium]
Length = 245
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTSGEDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLERLKEQLMKLEVMETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143781|gb|AFF58551.1| topoisomerase I, partial [Bembidion obtusum]
Length = 245
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 167/228 (73%), Positives = 193/228 (84%), Gaps = 5/228 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTLAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKK 442
+LCNHQRSVPKSH KSM LKEKI KR+Q+ D ++ LKDA++ + + K + DKKK
Sbjct: 121 ILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDGQKQLKDAQRDAKHGSVKEKVVYDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLK+QL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KMLERLKDQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 228
>gi|385302927|gb|EIF47032.1| dna topoisomerase i [Dekkera bruxellensis AWRI1499]
Length = 385
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 184/362 (50%), Positives = 238/362 (65%), Gaps = 11/362 (3%)
Query: 108 KEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRH 167
K ++ F+IEPPGLFRGRG HPK G LKRRV E + +N +++VP PP GH WKEVRH
Sbjct: 4 KXRLEIFKIEPPGLFRGRGAHPKTGMLKRRVYPEQVTLNLGNEAEVPLPPKGHNWKEVRH 63
Query: 168 DNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWK 227
DN V+WLA W EN+ KY+ +S LKG D++K+E AR L I+ IR++Y+ K
Sbjct: 64 DNTVSWLAMWRENISNSFKYVRFANNSSLKGISDFKKFEKARALKNVIDDIRKDYRRKLK 123
Query: 228 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCF 287
SK M RQ A A YFID LALRAG EK ED+ADTVGCCSLR EHI L P V F
Sbjct: 124 SKLMIERQIATATYFIDVLALRAGGEKSEDEADTVGCCSLRYEHIFLRP-----PNTVIF 178
Query: 288 DFLGKDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTSVLNKHLSELMEGLTA 346
DFLGKDS+R+Y EV V+ +VFKNL++F + KK DDLFDRL+ S+LNK+ + GLTA
Sbjct: 179 DFLGKDSVRFYQEVEVDPQVFKNLRIFKKAPKKPGDDLFDRLDPSILNKYFHSYLPGLTA 238
Query: 347 KVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGN 406
KVFRTYNAS T+Q QLB L+ + EK++ +N ANR VA+LCNHQR+V K + S+
Sbjct: 239 KVFRTYNASKTMQDQLB-LIPNKGTVNEKVVRFNAANREVAILCNHQRNVSKGFEASVQK 297
Query: 407 LKEKISN---KRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKE 463
+ EKI ++ ++K L K + KA D+ +T L + KEQ + + E +KE
Sbjct: 298 MNEKIEEMQWRKFRLKRMMLQLDKNLKRKKGKAYFDEIET-LXKEKEQQIINSLLEKEKE 356
Query: 464 EN 465
N
Sbjct: 357 RN 358
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 72/105 (68%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V+WLA W EN+ KY+ +S LKG D++K+E AR L I+ IR++Y+ KSK
Sbjct: 66 TVSWLAMWRENISNSFKYVRFANNSSLKGISDFKKFEKARALKNVIDDIRKDYRRKLKSK 125
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M RQ A A YFID LALRAG EK ED+ADTVGCCSLR EHI L
Sbjct: 126 LMIERQIATATYFIDVLALRAGGEKSEDEADTVGCCSLRYEHIFL 170
>gi|381143733|gb|AFF58527.1| topoisomerase I, partial [Bembidion jacksoniense]
Length = 239
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 167/227 (73%), Positives = 193/227 (85%), Gaps = 5/227 (2%)
Query: 269 VEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRL 328
VEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRL
Sbjct: 1 VEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRL 60
Query: 329 NTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAV 388
NT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+
Sbjct: 61 NTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAI 120
Query: 389 LCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKT 443
LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 LCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDKKKK 180
Query: 444 ALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 MLERLKEQLIKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 227
>gi|381143707|gb|AFF58514.1| topoisomerase I, partial [Bembidion genei illigeri]
Length = 244
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 167/228 (73%), Positives = 192/228 (84%), Gaps = 5/228 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKK 442
+LCNHQRSVPK H KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 ILCNHQRSVPKXHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KMLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 228
>gi|381143605|gb|AFF58463.1| topoisomerase I, partial [Bembidion (Nothocys) sp. 1 DRM-2012]
Length = 241
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 167/228 (73%), Positives = 193/228 (84%), Gaps = 5/228 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKK 442
+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ LKDA++ + + K + DKKK
Sbjct: 121 ILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQLKDAQRDAKHGSVKEKVVYDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLK+QL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KTLERLKDQLMKLEVLETDRDENKSIALGTSKLNYLDPRISVAWCKKY 228
>gi|381143603|gb|AFF58462.1| topoisomerase I, partial [Bembidion (Notaphus) sp. 1 DRM-2012]
Length = 239
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 167/227 (73%), Positives = 192/227 (84%), Gaps = 5/227 (2%)
Query: 269 VEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRL 328
VEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRL
Sbjct: 1 VEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRL 60
Query: 329 NTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAV 388
NT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+
Sbjct: 61 NTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAI 120
Query: 389 LCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKT 443
LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 LCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKKK 180
Query: 444 ALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 MLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 227
>gi|189094075|gb|ACD75865.1| topoisomerase I [Dineutus sublineatus]
Length = 234
Score = 339 bits (869), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 166/226 (73%), Positives = 193/226 (85%), Gaps = 5/226 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE KD + +VV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK +DDLF
Sbjct: 1 SLRVEHIELHERKDDRDHVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNTS++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL D + AEKIL+YNRANRA
Sbjct: 61 DRLNTSIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTSADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPK H KSM LKEKI KR+QV DA+R LKDA++ + + + + DK
Sbjct: 121 VAILCNHQRSVPKGHQKSMEKLKEKIEQKREQVADAQRQLKDAQRDAKRGSVKERVVADK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KK L RL++QL++LEVQETD++ENK+IALGTSKLNYLDPRISV W
Sbjct: 181 KKKQLDRLRDQLVRLEVQETDRDENKSIALGTSKLNYLDPRISVAW 226
>gi|381143583|gb|AFF58452.1| topoisomerase I, partial [Amerizus spectabilis]
Length = 245
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 167/229 (72%), Positives = 194/229 (84%), Gaps = 5/229 (2%)
Query: 267 LRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFD 326
LRVEHI+LHE+KDGK +VV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFD
Sbjct: 1 LRVEHIELHEQKDGKEFVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFD 60
Query: 327 RLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAV 386
RLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D S AEKIL+YNRANRAV
Sbjct: 61 RLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNGDDSVAEKILSYNRANRAV 120
Query: 387 AVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKK 441
A+LCNHQRSVPKSH KSM LKEKI KR+Q+ D +R +KDA++ + + K + DKK
Sbjct: 121 AILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDGQRQVKDAQRDAKHGSVKEKLVYDKK 180
Query: 442 KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
K L RL++QL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKMLERLRDQLVKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 229
>gi|381143827|gb|AFF58574.1| topoisomerase I, partial [Bembidion ruficolle]
Length = 228
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 168/226 (74%), Positives = 192/226 (84%), Gaps = 5/226 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+E+K DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMESKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + EKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVTEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KK L RLKEQLLKLEV ETD++ENK IALGTSKLNYLDPRISV W
Sbjct: 181 KKKMLERLKEQLLKLEVLETDRDENKAIALGTSKLNYLDPRISVAW 226
>gi|381143873|gb|AFF58597.1| topoisomerase I, partial [Bembidion tairuense]
Length = 243
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 167/226 (73%), Positives = 190/226 (84%), Gaps = 5/226 (2%)
Query: 270 EHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLN 329
EHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLN
Sbjct: 1 EHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLN 60
Query: 330 TSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVL 389
T ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL D + AEKIL+YNRANRAVA+L
Sbjct: 61 TQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTSADDTVAEKILSYNRANRAVAIL 120
Query: 390 CNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTA 444
CNHQRSVPKSH KSM LKEKI KR+Q+ DA++ LKDA++ + + K + DKKK
Sbjct: 121 CNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQLKDAQRDAKHGSVKEKVVYDKKKKT 180
Query: 445 LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 LERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 226
>gi|381143585|gb|AFF58453.1| topoisomerase I, partial [Amerizus wingatei]
Length = 238
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 167/229 (72%), Positives = 194/229 (84%), Gaps = 5/229 (2%)
Query: 267 LRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFD 326
LRVEHI+LHE+KDGK +VV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFD
Sbjct: 1 LRVEHIELHEQKDGKEFVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFD 60
Query: 327 RLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAV 386
RLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D S AEKIL+YNRANRAV
Sbjct: 61 RLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNKDDSVAEKILSYNRANRAV 120
Query: 387 AVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKK 441
A+LCNHQRSVPKSH KSM LKEKI KR+Q+ D +R +KDA++ + + K + DKK
Sbjct: 121 AILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDGQRQVKDAQRDAKHGSVKEKLVYDKK 180
Query: 442 KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
K L RL++QL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKMLERLRDQLVKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 229
>gi|189094081|gb|ACD75868.1| topoisomerase I [Scaphinotus petersi]
Length = 247
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 167/230 (72%), Positives = 191/230 (83%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI LHE+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHISLHEQKDDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D +EAEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNEDDTEAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDK 440
VA+LCNHQRSVPK H KSM LKEKI K+ + DAE+ +KDA++ + K + DK
Sbjct: 121 VAILCNHQRSVPKGHAKSMEKLKEKIEQKKDAISDAEQQVKDAQRDAKRGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLK+QL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKTLERLKDQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143629|gb|AFF58475.1| topoisomerase I, partial [Bembidion basicorne]
Length = 237
Score = 338 bits (867), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 167/228 (73%), Positives = 192/228 (84%), Gaps = 5/228 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKK 442
+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 ILCNHQRSVPKSHAKSMEKLKEKIEQKREQIVDAQKQVKDAQRDAKHGSVKEKVVYDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRI V W +
Sbjct: 181 KMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRIXVAWCKKY 228
>gi|381143799|gb|AFF58560.1| topoisomerase I, partial [Bembidion planum]
Length = 244
Score = 338 bits (866), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 166/227 (73%), Positives = 191/227 (84%), Gaps = 5/227 (2%)
Query: 269 VEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRL 328
VEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRL
Sbjct: 1 VEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRL 60
Query: 329 NTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAV 388
NT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + EKIL+YNRANRAVA+
Sbjct: 61 NTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVTEKILSYNRANRAVAI 120
Query: 389 LCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKT 443
LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 LCNHQRSVPKSHAKSMEKLKEKIEQKREQINDAQKQVKDAQRDAKHGSVKEKVVYDKKKK 180
Query: 444 ALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 MLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 227
>gi|381143639|gb|AFF58480.1| topoisomerase I, partial [Bembidion canadianum]
Length = 242
Score = 338 bits (866), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 166/227 (73%), Positives = 191/227 (84%), Gaps = 5/227 (2%)
Query: 269 VEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRL 328
VEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRL
Sbjct: 1 VEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRL 60
Query: 329 NTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAV 388
NT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+
Sbjct: 61 NTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAI 120
Query: 389 LCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKT 443
LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 LCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKKK 180
Query: 444 ALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRI V W +
Sbjct: 181 MLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRIXVAWCKKY 227
>gi|381143795|gb|AFF58558.1| topoisomerase I, partial [Bembidion perspicuum]
Length = 241
Score = 337 bits (865), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 166/226 (73%), Positives = 191/226 (84%), Gaps = 5/226 (2%)
Query: 270 EHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLN 329
EHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLN
Sbjct: 1 EHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLN 60
Query: 330 TSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVL 389
T ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+L
Sbjct: 61 TQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAIL 120
Query: 390 CNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTA 444
CNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 CNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKKKM 180
Query: 445 LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 LERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 226
>gi|381143853|gb|AFF58587.1| topoisomerase I, partial [Bembidion simplex]
Length = 233
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 167/230 (72%), Positives = 192/230 (83%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK ALGTSKLNYLDP I V W +
Sbjct: 181 KKKMLERLKEQLMKLEVQETDRDENKAXALGTSKLNYLDPXIXVXWCKKY 230
>gi|381143665|gb|AFF58493.1| topoisomerase I, partial [Bembidion complanulum]
Length = 234
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 166/226 (73%), Positives = 191/226 (84%), Gaps = 5/226 (2%)
Query: 270 EHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLN 329
EHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLN
Sbjct: 1 EHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLN 60
Query: 330 TSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVL 389
T ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+L
Sbjct: 61 TQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAIL 120
Query: 390 CNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTA 444
CNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 CNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKKKM 180
Query: 445 LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 LERLKEQLMKLEVQETDRDENKXIALGTSKLNYLDPRISVAWCKKY 226
>gi|442749081|gb|JAA66700.1| Putative dna topoisomerase i [Ixodes ricinus]
Length = 306
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 168/252 (66%), Positives = 202/252 (80%), Gaps = 7/252 (2%)
Query: 246 LALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
LALRAGNEK+E + ADTVGCCSLRVEH+ LH+ KDGK +VV FDFLGKDSIRY N VPVE
Sbjct: 26 LALRAGNEKEEGETADTVGCCSLRVEHLTLHDSKDGKEFVVEFDFLGKDSIRYVNAVPVE 85
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVF+NL+LF+ENKK +DDLFDRLNTS+LNKHL+ELMEGLTAKVFRTYNAS TLQ+QL
Sbjct: 86 KRVFRNLKLFMENKKPADDLFDRLNTSILNKHLNELMEGLTAKVFRTYNASKTLQEQLEL 145
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L + D S EK+LAYNRANRAVA+LCNHQR+VPK+ DK M NL++K+ K Q++ ++
Sbjct: 146 LTEADMSLPEKMLAYNRANRAVAILCNHQRAVPKTFDKQMENLQKKMEEKEAQIRQCKKE 205
Query: 425 LKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
LK K + + K + ++KK + +L++Q+ KLEVQ TDKEENK IALGTSKLNYL
Sbjct: 206 LKQHKSDYNNSRTEKDKQLLERKKKRMQQLEDQMKKLEVQATDKEENKQIALGTSKLNYL 265
Query: 479 DPRISVTWLASW 490
DPRISV W W
Sbjct: 266 DPRISVAWCKKW 277
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 33/39 (84%), Gaps = 1/39 (2%)
Query: 559 LALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDEKKI 596
LALRAGNEK+E + ADTVGCCSLRVEH+ LH+ KD K+
Sbjct: 26 LALRAGNEKEEGETADTVGCCSLRVEHLTLHDSKDGKEF 64
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KFRWAI+MA D+ F
Sbjct: 283 KIYNKTQRDKFRWAIEMAGPDYKF 306
>gi|241709640|ref|XP_002413389.1| DNA topoisomerase type I, putative [Ixodes scapularis]
gi|215507203|gb|EEC16697.1| DNA topoisomerase type I, putative [Ixodes scapularis]
Length = 250
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 167/248 (67%), Positives = 203/248 (81%), Gaps = 7/248 (2%)
Query: 246 LALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
LALRAGNEK+E + ADTVGCCSLRVEH+ LH+ KDGK +VV FDFLGKDSIRY N VPVE
Sbjct: 2 LALRAGNEKEEGETADTVGCCSLRVEHLTLHDSKDGKEFVVEFDFLGKDSIRYVNAVPVE 61
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVF+NL+LF+ENKK +DDLFDRLNTS+LNKHL+ELMEGLTAKVFRTYNAS TLQ+QL
Sbjct: 62 KRVFRNLKLFMENKKPADDLFDRLNTSILNKHLNELMEGLTAKVFRTYNASKTLQEQLEL 121
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L + D S EK+LAYNRANRAVA+LCNHQR+VPK+ DK M NL++K+ K Q+++ ++
Sbjct: 122 LTEADMSLPEKMLAYNRANRAVAILCNHQRAVPKTFDKQMENLQKKMEEKEAQIRECKKE 181
Query: 425 LKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
LK K ++ + K + ++KK + +L++Q+ KLEVQ TDKEENK IALGTSKLNYL
Sbjct: 182 LKQHKSDYNNSRSEKDKQLLERKKKRMQQLEDQMKKLEVQATDKEENKQIALGTSKLNYL 241
Query: 479 DPRISVTW 486
DPRISV W
Sbjct: 242 DPRISVAW 249
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 33/39 (84%), Gaps = 1/39 (2%)
Query: 559 LALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDEKKI 596
LALRAGNEK+E + ADTVGCCSLRVEH+ LH+ KD K+
Sbjct: 2 LALRAGNEKEEGETADTVGCCSLRVEHLTLHDSKDGKEF 40
>gi|381143769|gb|AFF58545.1| topoisomerase I, partial [Bembidion modestum]
Length = 242
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 165/225 (73%), Positives = 190/225 (84%), Gaps = 5/225 (2%)
Query: 271 HIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNT 330
HI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT
Sbjct: 1 HIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNT 60
Query: 331 SVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLC 390
++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LC
Sbjct: 61 QIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILC 120
Query: 391 NHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTAL 445
NHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK L
Sbjct: 121 NHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKKKML 180
Query: 446 GRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 ERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 225
>gi|381143673|gb|AFF58497.1| topoisomerase I, partial [Bembidion contractum]
Length = 236
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 165/225 (73%), Positives = 189/225 (84%), Gaps = 5/225 (2%)
Query: 271 HIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNT 330
HI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT
Sbjct: 1 HIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNT 60
Query: 331 SVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLC 390
++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL D + AEKIL+YNRANRAVA+LC
Sbjct: 61 QIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTSADDTVAEKILSYNRANRAVAILC 120
Query: 391 NHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTAL 445
NHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK L
Sbjct: 121 NHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKKKML 180
Query: 446 GRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 ERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 225
>gi|119602665|gb|EAW82259.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_a [Homo sapiens]
gi|119602667|gb|EAW82261.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_a [Homo sapiens]
gi|119602672|gb|EAW82266.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_a [Homo sapiens]
Length = 291
Score = 335 bits (859), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 146/226 (64%), Positives = 184/226 (81%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKE 83
M++HEYTTKE F NF DWRK M +ER VI L KCDF ++H YFV K+ RK +S+E
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 84 EKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
EK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRGRG+HPKMG LKRR+ ED+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ 203
+INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ +KYIMLNP SKLKGE WQ
Sbjct: 121 VINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQ 180
Query: 204 KYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALR 249
K+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFIDK+ ++
Sbjct: 181 KFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKVGVQ 226
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 68/80 (85%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 147 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 206
Query: 543 EMRIRQRAVALYFIDKLALR 562
EM+ RQRAVALYFIDK+ ++
Sbjct: 207 EMKTRQRAVALYFIDKVGVQ 226
>gi|381143937|gb|AFF58629.1| topoisomerase I, partial [Typhlocharis armatus]
Length = 245
Score = 335 bits (858), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 198/230 (86%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHEEKDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK G DDLF
Sbjct: 1 SLRVEHIELHEEKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAGGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRT+NAS TLQQQLNEL +PD S AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTFNASWTLQQQLNELTNPDDSVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH+KSM LKEKI K++Q+ +A++ +KDA K + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHEKSMEKLKEKIDAKKEQIAEAKKQVKDAHKDAKHGSVKEKIVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L ++K+QL+KLEVQETD++ENKTI+LGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLEKMKDQLVKLEVQETDRDENKTISLGTSKLNYLDPRISVAWCKKY 230
>gi|381143861|gb|AFF58591.1| topoisomerase I, partial [Bembidion (Nothonepha) nr. lonae
DRM-2012]
Length = 239
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 164/226 (72%), Positives = 191/226 (84%), Gaps = 5/226 (2%)
Query: 270 EHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLN 329
EHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLN
Sbjct: 1 EHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLN 60
Query: 330 TSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVL 389
T ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + + AEKIL+YNRANRAVA+L
Sbjct: 61 TQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAIL 120
Query: 390 CNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTA 444
CNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 CNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKKKM 180
Query: 445 LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 LERLKEQLIKLEVMETDRDENKSIALGTSKLNYLDPRISVAWCKKY 226
>gi|381143869|gb|AFF58595.1| topoisomerase I, partial [Bembidion spinolai]
Length = 244
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 163/227 (71%), Positives = 191/227 (84%), Gaps = 5/227 (2%)
Query: 269 VEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRL 328
VEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRL
Sbjct: 1 VEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRL 60
Query: 329 NTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAV 388
NT ++NKHL+ELM+GLTAKVFRTYNAS TLQQQL+EL + + + EKIL+YNRANRAVA+
Sbjct: 61 NTQIMNKHLTELMDGLTAKVFRTYNASWTLQQQLDELTNANDTVTEKILSYNRANRAVAI 120
Query: 389 LCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKT 443
LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 LCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKKK 180
Query: 444 ALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 TLERLKEQLMKLEVMETDRDENKSIALGTSKLNYLDPRISVAWCKKY 227
>gi|381143811|gb|AFF58566.1| topoisomerase I, partial [Bembidion punctulatum]
Length = 243
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 165/230 (71%), Positives = 192/230 (83%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLR+EHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+E+K DDLF
Sbjct: 1 SLRIEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMEHKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D S AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDSVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQINDAQKQVKDAERDAKRGSVKEKMVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLK+QL KLE+ ETD++ENK IALGTSKLNYLDP ISV W +
Sbjct: 181 KKKMLERLKDQLTKLEILETDRDENKAIALGTSKLNYLDPXISVAWCKKY 230
>gi|381143753|gb|AFF58537.1| topoisomerase I, partial [Bembidion lunulatum]
Length = 243
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 164/226 (72%), Positives = 190/226 (84%), Gaps = 5/226 (2%)
Query: 270 EHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLN 329
EHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLN
Sbjct: 1 EHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLN 60
Query: 330 TSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVL 389
T ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + + AEKIL+YNRANRAVA+L
Sbjct: 61 TQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAIL 120
Query: 390 CNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTA 444
CNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 CNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKKKM 180
Query: 445 LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 XERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 226
>gi|119602669|gb|EAW82263.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_d [Homo sapiens]
Length = 290
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 146/222 (65%), Positives = 181/222 (81%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKE 83
M++HEYTTKE F NF DWRK M +ER VI L KCDF ++H YFV K+ RK +S+E
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 84 EKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
EK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRGRG+HPKMG LKRR+ ED+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ 203
+INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ +KYIMLNP SKLKGE WQ
Sbjct: 121 VINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQ 180
Query: 204 KYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDK 245
K+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFIDK
Sbjct: 181 KFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDK 222
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/76 (69%), Positives = 65/76 (85%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 147 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 206
Query: 543 EMRIRQRAVALYFIDK 558
EM+ RQRAVALYFIDK
Sbjct: 207 EMKTRQRAVALYFIDK 222
>gi|189094069|gb|ACD75862.1| topoisomerase I [Laccophilus pictus]
Length = 247
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 164/230 (71%), Positives = 192/230 (83%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHEE+D K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEERDDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQ+QL++L + + S EKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASHTLQEQLDKLTNAEDSVTEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPK H KSM LKEKI KR+Q+++ +R +KDA + + + K + DK
Sbjct: 121 VAILCNHQRSVPKGHQKSMEKLKEKIDQKREQIEEMQRQVKDAARDAKHGSVKEKLVHDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK +L RLKEQL KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKSLDRLKEQLKKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|189094067|gb|ACD75861.1| topoisomerase I [Chauliognathus opacus]
Length = 247
Score = 332 bits (850), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 164/226 (72%), Positives = 192/226 (84%), Gaps = 5/226 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLR+EHI LHE KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+E K+ DDLF
Sbjct: 1 SLRIEHIALHEHKDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMEKKEPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT++LNKHL+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRA
Sbjct: 61 DRLNTAILNKHLNELMEGLTAKVFRTYNASWTLQQQLDKLTNEDDSISEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQR+VPK H+KSM +KEKI KR+ +KDAER +KDA++ + + K + +K
Sbjct: 121 VAILCNHQRAVPKGHEKSMEKIKEKIDAKRQAIKDAERQVKDAQRDAKHGSVKEKTVYEK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
K+ L RLKEQL KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 KRKLLERLKEQLTKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 226
>gi|381143767|gb|AFF58544.1| topoisomerase I, partial [Bembidion mimus]
Length = 234
Score = 331 bits (849), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 164/223 (73%), Positives = 188/223 (84%), Gaps = 5/223 (2%)
Query: 273 QLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSV 332
+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT +
Sbjct: 1 ELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQI 60
Query: 333 LNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNH 392
+NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNH
Sbjct: 61 MNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNH 120
Query: 393 QRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGR 447
QRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA+K + + K + DKKK L R
Sbjct: 121 QRSVPKSHAKSMEKLKEKIEQKREQIADAQKQVKDAQKDAKHGSVKEKVVYDKKKKMLER 180
Query: 448 LKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
LKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 LKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 223
>gi|47937947|gb|AAH71418.1| Top1l protein [Danio rerio]
Length = 469
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 156/222 (70%), Positives = 187/222 (84%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS +AEE+ATF+++M++HEYTTK+ F NF KDWRK MT +E++ ITDL+KCDF
Sbjct: 237 GKHMKLSPNAEEVATFFSKMLDHEYTTKDIFRKNFFKDWRKEMTSEEKSKITDLNKCDFS 296
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF +SE RKAM+KEEK KIK+ENE I +EYG C +D HKE+I NFRIEPPGLFRG
Sbjct: 297 NMSEYFKAQSEARKAMTKEEKLKIKEENERILQEYGFCIMDNHKERIANFRIEPPGLFRG 356
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR++ EDIIINCSKDSK P PPPG KWKEVRHDN+VTWL SWTEN+QG
Sbjct: 357 RGDHPKMGMLKRRIRPEDIIINCSKDSKHPTPPPGTKWKEVRHDNKVTWLVSWTENIQGS 416
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW 226
+KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DW
Sbjct: 417 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRSQYRDDW 458
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/56 (71%), Positives = 49/56 (87%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW 539
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DW
Sbjct: 403 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRSQYRDDW 458
>gi|189094063|gb|ACD75859.1| topoisomerase I [Sialis sp. ALW-2008]
Length = 234
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 162/230 (70%), Positives = 193/230 (83%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAAGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNTS++NKHL+ELM+GLTAKVFRTYNAS TLQ+QL+ L + D + +EKIL+YNRANRA
Sbjct: 61 DRLNTSIMNKHLNELMDGLTAKVFRTYNASSTLQEQLDLLTNEDDTLSEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPK H KSM LKEKI KR+ +++ ++ +KDA K + + K + DK
Sbjct: 121 VAILCNHQRSVPKGHQKSMEKLKEKIEQKREFIQEMQKXVKDAAKDAKHGSVKEKVVHDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK AL RL++QL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKALERLRDQLMKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143633|gb|AFF58477.1| topoisomerase I, partial [Bembidion bimaculatum]
Length = 218
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 163/218 (74%), Positives = 187/218 (85%), Gaps = 5/218 (2%)
Query: 269 VEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRL 328
VEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRL
Sbjct: 1 VEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRL 60
Query: 329 NTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAV 388
NT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+
Sbjct: 61 NTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAI 120
Query: 389 LCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKT 443
LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 LCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKKK 180
Query: 444 ALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPR 481
L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPR
Sbjct: 181 MLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPR 218
>gi|189094085|gb|ACD75870.1| topoisomerase I [Sirdenus grayii]
Length = 247
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 170/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D S AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDSLAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDK----- 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA+R +KDA+K + ++ +K
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQIADAQRQVKDAQKDAKHGSVKEKLVYEK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L +LK+QL KLEVQETD++ENKTIALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLDKLKDQLKKLEVQETDRDENKTIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143889|gb|AFF58605.1| topoisomerase I, partial [Bembidion vernale]
Length = 238
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 163/223 (73%), Positives = 188/223 (84%), Gaps = 5/223 (2%)
Query: 273 QLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSV 332
+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT +
Sbjct: 1 ELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQI 60
Query: 333 LNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNH 392
+NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNH
Sbjct: 61 MNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNH 120
Query: 393 QRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGR 447
QRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK L R
Sbjct: 121 QRSVPKSHAKSMEKLKEKIDQKREQIVDAQKQVKDAQRDAKHGSVKEKVVHDKKKKMLER 180
Query: 448 LKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
LKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 LKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 223
>gi|154280290|ref|XP_001540958.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412901|gb|EDN08288.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 651
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 161/341 (47%), Positives = 221/341 (64%), Gaps = 15/341 (4%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTK-EAFNTNFMKDWRKSMTEKERA------ 53
M+ G + L+ +AEE+A F+ M+ + + F NF D+ + A
Sbjct: 302 MKYDGIPITLAPEAEEVAGFFGSMLNSTHNVENPTFQKNFFTDFTAYIKNSGGAKDPNGN 361
Query: 54 --VITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKI 111
+ KCDF+ + Y+ E+K++ EKK++K E + + Y C DG K+K+
Sbjct: 362 PVAVKSFEKCDFKPIFEYYEAARLEKKSLPSAEKKRLKAEKDELEAPYMYCMWDGRKQKV 421
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK GK+K RV E I IN K++KVP PPPGHKWKE++HD +
Sbjct: 422 GNFRVEPPALFRGRGEHPKTGKVKTRVMPEQITINIGKEAKVPVPPPGHKWKEIKHDQEG 481
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W ENV G KY+ML +S +KG D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 482 TWLAMWQENVNGNYKYVMLAANSDIKGLSDYKKFEKARELKKHIDRIRKDYKKGLKHELM 541
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L P V FDFLG
Sbjct: 542 SERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTLKP-----PNTVIFDFLG 596
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVE-NKKGSDDLFDRLNTS 331
KDSIR+Y+EV V+ +VFKNL++F + K+ D++FDRL TS
Sbjct: 597 KDSIRFYDEVEVDPQVFKNLKIFKKPPKREGDEIFDRLTTS 637
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 77/103 (74%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W ENV G KY+ML +S +KG D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 482 TWLAMWQENVNGNYKYVMLAANSDIKGLSDYKKFEKARELKKHIDRIRKDYKKGLKHELM 541
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 542 SERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTL 584
>gi|189094087|gb|ACD75871.1| topoisomerase I [Asaphidion yukonense]
Length = 247
Score = 328 bits (842), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 195/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L +LKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKMLEKLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143637|gb|AFF58479.1| topoisomerase I, partial [Bembidion decorum subconvexum]
Length = 245
Score = 328 bits (842), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 167/228 (73%), Positives = 192/228 (84%), Gaps = 5/228 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKK 442
+LCNHQRSVPKSH KSM KEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 ILCNHQRSVPKSHAKSMEKXKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KMLERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 228
>gi|381143911|gb|AFF58616.1| topoisomerase I, partial [Merizodus nr. catapileanus DRM-2012]
Length = 245
Score = 328 bits (840), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 172/230 (74%), Positives = 196/230 (85%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKLYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT+++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + S AEKIL+YNRANRA
Sbjct: 61 DRLNTAIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNNEDSVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR Q+ DA+R +KDA+K + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKRDQIGDAQRQVKDAQKDAKRGSVKEKLVFDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKLLERLKEQLVKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143871|gb|AFF58596.1| topoisomerase I, partial [Bembidion stillaguamish]
Length = 247
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 169/230 (73%), Positives = 194/230 (84%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + EKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVTEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKLLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143899|gb|AFF58610.1| topoisomerase I, partial [Diplochaetus planatus]
Length = 245
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 168/229 (73%), Positives = 193/229 (84%), Gaps = 5/229 (2%)
Query: 267 LRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFD 326
LRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFD
Sbjct: 1 LRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFD 60
Query: 327 RLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAV 386
RLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D S AEKIL+YNRANRAV
Sbjct: 61 RLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDSLAEKILSYNRANRAV 120
Query: 387 AVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDK-----K 441
A+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA+R +KDA+K + ++ +K K
Sbjct: 121 AILCNHQRSVPKSHAKSMEKLKEKIDQKREQIADAQRQVKDAQKDAKHGSVKEKLIHEKK 180
Query: 442 KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
K L +LK+QL +LEVQETD++ENKTIALGTSKLNYLDPRISV W +
Sbjct: 181 KKMLDKLKDQLKRLEVQETDRDENKTIALGTSKLNYLDPRISVAWCKKY 229
>gi|189094071|gb|ACD75863.1| topoisomerase I [Copelatus distinctus]
Length = 234
Score = 327 bits (837), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/230 (70%), Positives = 189/230 (82%), Gaps = 5/230 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAEGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELM+GLTAKVFRTYNAS TLQ+QL+ L + D S EKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMDGLTAKVFRTYNASSTLQEQLDLLTNEDDSVTEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPK H KSM LKEKI K++ + + ++ +KDA K + + K + DK
Sbjct: 121 VAILCNHQRSVPKGHQKSMEKLKEKIEQKKEHIAEMQKQVKDAAKDAKHGSVKEKVVHDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KK AL RLK+QL KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KKKALERLKDQLKKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 230
>gi|381143749|gb|AFF58535.1| topoisomerase I, partial [Bembidion lonae]
Length = 236
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 160/222 (72%), Positives = 187/222 (84%), Gaps = 5/222 (2%)
Query: 274 LHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVL 333
LHE+K+GK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++
Sbjct: 1 LHEQKEGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIM 60
Query: 334 NKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQ 393
NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + + AEKIL+YNRANRAVA+LCNHQ
Sbjct: 61 NKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQ 120
Query: 394 RSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRL 448
RSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK L RL
Sbjct: 121 RSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERL 180
Query: 449 KEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KEQL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KEQLIKLEVMETDRDENKSIALGTSKLNYLDPRISVAWCKKY 222
>gi|221483488|gb|EEE21807.1| DNA topoisomerase I, putative [Toxoplasma gondii GT1]
Length = 953
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 177/382 (46%), Positives = 240/382 (62%), Gaps = 25/382 (6%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE--------------- 49
GK + L +AEE+A ++ ++E +Y TK F NF K + +++ +
Sbjct: 333 GKPVSLPPEAEEVANYWCGVLESDYATKPRFVENFWKAFLRNLPKDHPILVEEGFAEAKL 392
Query: 50 ----KERAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTID 105
KE + + CDF + Y ++ E +K MSKEEK+ +K + Y +D
Sbjct: 393 ATEYKEGERMVGFAACDFSPIKEYLDKQKELKKEMSKEEKEILKQQKLQEGAPYAYALVD 452
Query: 106 GHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVP-PPPPGHKWKE 164
+EK+GN R+EPPGLFRGRGEHPK G LKRR+ + D+I+N ++D+ VP PGH WK+
Sbjct: 453 FIREKVGNTRVEPPGLFRGRGEHPKQGMLKRRIFSYDVILNLAEDAPVPRVALPGHAWKD 512
Query: 165 VRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQA 224
V HDN VTWLA + +++ QVKY+ L SK KG++D+ KYE ARKL +++IR++Y
Sbjct: 513 VFHDNSVTWLAFYRDSINDQVKYMYLAAQSKFKGQQDFLKYEKARKLKLHVDRIRQDYFK 572
Query: 225 DWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPY 283
+S RQ A Y ID LALR G EKD D+ ADTVGCCSLRVEH+ EK
Sbjct: 573 KLESTNSLDRQLGTATYLIDVLALRVGGEKDTDEEADTVGCCSLRVEHLTFDTEKQE--- 629
Query: 284 VVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEG 343
V FDFLGKDSIRY+N V V +VFKN+ F + KK DD+FD++N++ LN HL + M G
Sbjct: 630 -VTFDFLGKDSIRYFNTVKVHPQVFKNVVGFCKGKKPEDDVFDKINSAALNNHLRQFMPG 688
Query: 344 LTAKVFRTYNASITLQQQLNEL 365
L+AKVFRTYNASITLQ +L +L
Sbjct: 689 LSAKVFRTYNASITLQNELFKL 710
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SVTWLA + +++ QVKY+ L SK KG++D+ KYE ARKL +++IR++Y +S
Sbjct: 518 SVTWLAFYRDSINDQVKYMYLAAQSKFKGQQDFLKYEKARKLKLHVDRIRQDYFKKLEST 577
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEEKDE 593
RQ A Y ID LALR G EKD D +ADTVGCCSLRVEH+ EK E
Sbjct: 578 NSLDRQLGTATYLIDVLALRVGGEKDTDEEADTVGCCSLRVEHLTFDTEKQE 629
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 33/143 (23%)
Query: 373 AEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLK--------------------EKIS 412
E + YN ANRAVA+LCNHQRSVPK H SM ++ +K
Sbjct: 783 GELVQFYNDANRAVAILCNHQRSVPKQHAASMQKMEHQQLMLDEDIRECEEYLEFLKKPP 842
Query: 413 NKRKQ----VKDAERALKDAKKAGESKAMTD-----KKKTALGRLKEQLLKLEVQETDKE 463
+KRK+ V D + + +K M + + + L R + LLK+++ K+
Sbjct: 843 SKRKERFTFVSDVKDFQGNPRKTNVRDGMKEDVCARRLQALLKRRADHLLKIKL----KD 898
Query: 464 ENKTIALGTSKLNYLDPRISVTW 486
+NKT+ALGTSK+NY+DPRI+V +
Sbjct: 899 DNKTVALGTSKINYMDPRITVAF 921
>gi|237839157|ref|XP_002368876.1| DNA topoisomerase I, putative [Toxoplasma gondii ME49]
gi|211966540|gb|EEB01736.1| DNA topoisomerase I, putative [Toxoplasma gondii ME49]
Length = 953
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 177/382 (46%), Positives = 240/382 (62%), Gaps = 25/382 (6%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE--------------- 49
GK + L +AEE+A ++ ++E +Y TK F NF K + +++ +
Sbjct: 333 GKPVSLPPEAEEVANYWCGVLESDYATKPRFVENFWKAFLRNLPKDHPILVEEGFAEAKL 392
Query: 50 ----KERAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTID 105
KE + + CDF + Y ++ E +K MSKEEK+ +K + Y +D
Sbjct: 393 ATEYKEGERMVGFAACDFSPIKEYLDKQKELKKEMSKEEKEILKQQKLQEGAPYAYALVD 452
Query: 106 GHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVP-PPPPGHKWKE 164
+EK+GN R+EPPGLFRGRGEHPK G LKRR+ + D+I+N ++D+ VP PGH WK+
Sbjct: 453 FIREKVGNTRVEPPGLFRGRGEHPKQGMLKRRIFSYDVILNLAEDAPVPRVALPGHAWKD 512
Query: 165 VRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQA 224
V HDN VTWLA + +++ QVKY+ L SK KG++D+ KYE ARKL +++IR++Y
Sbjct: 513 VFHDNSVTWLAFYRDSINDQVKYMYLAAQSKFKGQQDFLKYEKARKLKLHVDRIRQDYFK 572
Query: 225 DWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPY 283
+S RQ A Y ID LALR G EKD D+ ADTVGCCSLRVEH+ EK
Sbjct: 573 KLESTNSLDRQLGTATYLIDVLALRVGGEKDTDEEADTVGCCSLRVEHLTFDTEKQE--- 629
Query: 284 VVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEG 343
V FDFLGKDSIRY+N V V +VFKN+ F + KK DD+FD++N++ LN HL + M G
Sbjct: 630 -VTFDFLGKDSIRYFNTVKVHPQVFKNVVGFCKGKKPEDDVFDKINSAALNNHLRQFMPG 688
Query: 344 LTAKVFRTYNASITLQQQLNEL 365
L+AKVFRTYNASITLQ +L +L
Sbjct: 689 LSAKVFRTYNASITLQNELFKL 710
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SVTWLA + +++ QVKY+ L SK KG++D+ KYE ARKL +++IR++Y +S
Sbjct: 518 SVTWLAFYRDSINDQVKYMYLAAQSKFKGQQDFLKYEKARKLKLHVDRIRQDYFKKLEST 577
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEEKDE 593
RQ A Y ID LALR G EKD D +ADTVGCCSLRVEH+ EK E
Sbjct: 578 NSLDRQLGTATYLIDVLALRVGGEKDTDEEADTVGCCSLRVEHLTFDTEKQE 629
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 33/143 (23%)
Query: 373 AEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLK--------------------EKIS 412
E + YN ANRAVA+LCNHQRSVPK H SM ++ +K
Sbjct: 783 GELVQFYNDANRAVAILCNHQRSVPKQHAASMQKMEHQQLMLDEDIRECEEYLEFLKKPP 842
Query: 413 NKRKQ----VKDAERALKDAKKAGESKAMTD-----KKKTALGRLKEQLLKLEVQETDKE 463
+KRK+ V D + + +K M + + + L R + LLK+++ K+
Sbjct: 843 SKRKERFTFVSDVKDFQGNPRKTNVRDGMKEDVCARRLQALLKRRADHLLKIKL----KD 898
Query: 464 ENKTIALGTSKLNYLDPRISVTW 486
+NKT+ALGTSK+NY+DPRI+V +
Sbjct: 899 DNKTVALGTSKINYMDPRITVAF 921
>gi|221507958|gb|EEE33545.1| DNA topoisomerase I, putative [Toxoplasma gondii VEG]
Length = 953
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 177/382 (46%), Positives = 240/382 (62%), Gaps = 25/382 (6%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE--------------- 49
GK + L +AEE+A ++ ++E +Y TK F NF K + +++ +
Sbjct: 333 GKPVSLPPEAEEVANYWCGVLESDYATKPRFVENFWKAFLRNLPKDHPILVEEGFAEAKL 392
Query: 50 ----KERAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTID 105
KE + + CDF + Y ++ E +K MSKEEK+ +K + Y +D
Sbjct: 393 ATEYKEGERMVGFAACDFSPIKEYLDKQKELKKEMSKEEKEILKQQKLQEGAPYAYALVD 452
Query: 106 GHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVP-PPPPGHKWKE 164
+EK+GN R+EPPGLFRGRGEHPK G LKRR+ + D+I+N ++D+ VP PGH WK+
Sbjct: 453 FIREKVGNTRVEPPGLFRGRGEHPKQGMLKRRIFSYDVILNLAEDAPVPRVALPGHAWKD 512
Query: 165 VRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQA 224
V HDN VTWLA + +++ QVKY+ L SK KG++D+ KYE ARKL +++IR++Y
Sbjct: 513 VFHDNSVTWLAFYRDSINDQVKYMYLAAQSKFKGQQDFLKYEKARKLKLHVDRIRQDYFK 572
Query: 225 DWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPY 283
+S RQ A Y ID LALR G EKD D+ ADTVGCCSLRVEH+ EK
Sbjct: 573 KLESTNSLDRQLGTATYLIDVLALRVGGEKDTDEEADTVGCCSLRVEHLTFDTEKQE--- 629
Query: 284 VVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEG 343
V FDFLGKDSIRY+N V V +VFKN+ F + KK DD+FD++N++ LN HL + M G
Sbjct: 630 -VTFDFLGKDSIRYFNTVKVHPQVFKNVVGFCKGKKPEDDVFDKINSAALNNHLRQFMPG 688
Query: 344 LTAKVFRTYNASITLQQQLNEL 365
L+AKVFRTYNASITLQ +L +L
Sbjct: 689 LSAKVFRTYNASITLQNELFKL 710
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SVTWLA + +++ QVKY+ L SK KG++D+ KYE ARKL +++IR++Y +S
Sbjct: 518 SVTWLAFYRDSINDQVKYMYLAAQSKFKGQQDFLKYEKARKLKLHVDRIRQDYFKKLEST 577
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEEKDE 593
RQ A Y ID LALR G EKD D +ADTVGCCSLRVEH+ EK E
Sbjct: 578 NSLDRQLGTATYLIDVLALRVGGEKDTDEEADTVGCCSLRVEHLTFDTEKQE 629
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 33/143 (23%)
Query: 373 AEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLK--------------------EKIS 412
E + YN ANRAVA+LCNHQRSVPK H SM ++ +K
Sbjct: 783 GELVQFYNDANRAVAILCNHQRSVPKQHAASMQKMEHQQLMLDEDIRECEEYLEFLKKPP 842
Query: 413 NKRKQ----VKDAERALKDAKKAGESKAMTD-----KKKTALGRLKEQLLKLEVQETDKE 463
+KRK+ V D + + +K M + + + L R + LLK+++ K+
Sbjct: 843 SKRKERFTFVSDVKDFQGNPRKTNVRDGMKEDVCARRLQALLKRRADHLLKIKL----KD 898
Query: 464 ENKTIALGTSKLNYLDPRISVTW 486
+NKT+ALGTSK+NY+DPRI+V +
Sbjct: 899 DNKTVALGTSKINYMDPRITVAF 921
>gi|381143615|gb|AFF58468.1| topoisomerase I, partial [Bembidion affine]
Length = 242
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 165/225 (73%), Positives = 189/225 (84%), Gaps = 5/225 (2%)
Query: 271 HIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNT 330
HI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT
Sbjct: 1 HIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNT 60
Query: 331 SVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLC 390
++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LC
Sbjct: 61 QIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILC 120
Query: 391 NHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTAL 445
NHQRSVPKSH KSM KEKI KR+Q+ DA++ +KDA+K + + K + DKKK L
Sbjct: 121 NHQRSVPKSHAKSMEKXKEKIEQKREQIADAQKQVKDAQKDAKHGSVKEKVVYDKKKKML 180
Query: 446 GRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
RLKEQL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 ERLKEQLIKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 225
>gi|381143913|gb|AFF58617.1| topoisomerase I, partial [Ocys quinquestriatus]
Length = 217
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 161/217 (74%), Positives = 186/217 (85%), Gaps = 5/217 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA+K + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIEQKREQITDAQKQVKDAQKDAKHGSVKEKIVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
KK +L RLK+QL+KLEVQETD++ENK IALGTSKLNY
Sbjct: 181 KKKSLERLKDQLMKLEVQETDRDENKAIALGTSKLNY 217
>gi|381143711|gb|AFF58516.1| topoisomerase I, partial [Bembidion gordoni]
Length = 236
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/226 (74%), Positives = 191/226 (84%), Gaps = 5/226 (2%)
Query: 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLF 325
SLRVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLF
Sbjct: 1 SLRVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLF 60
Query: 326 DRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRA 385
DRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL D + AEKIL+YNRANRA
Sbjct: 61 DRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTSADDTVAEKILSYNRANRA 120
Query: 386 VAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDK 440
VA+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DK
Sbjct: 121 VAILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDK 180
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KK L RLKEQL+KLEVQETD++ENK IALGTSKLNYLDP I V W
Sbjct: 181 KKKLLERLKEQLMKLEVQETDRDENKAIALGTSKLNYLDPXIXVAW 226
>gi|381143581|gb|AFF58451.1| topoisomerase I, partial [Amerizus (Tiruka) sp. DRM-2012]
Length = 239
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 166/228 (72%), Positives = 192/228 (84%), Gaps = 5/228 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHI+LHE KDGK +VV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RVEHIELHETKDGKEFVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELME LTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEALTAKVFRTYNASWTLQQQLDELTNADDTLAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGES-----KAMTDKKK 442
+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA+R +KDA++ ++ K + DKKK
Sbjct: 121 ILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQRQVKDAQRDAKNGSVKEKVVHDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLK+QL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KLLERLKDQLVKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 228
>gi|381143591|gb|AFF58456.1| topoisomerase I, partial [Asaphidion curtum]
Length = 245
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 166/228 (72%), Positives = 192/228 (84%), Gaps = 5/228 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
RVEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RVEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKK 442
+LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 ILCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L +LKEQL+KLEV ETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 KMLEKLKEQLMKLEVMETDRDENKAIALGTSKLNYLDPRISVAWCKKY 228
>gi|401410206|ref|XP_003884551.1| hypothetical protein NCLIV_049500 [Neospora caninum Liverpool]
gi|325118969|emb|CBZ54521.1| hypothetical protein NCLIV_049500 [Neospora caninum Liverpool]
Length = 898
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 175/383 (45%), Positives = 241/383 (62%), Gaps = 27/383 (7%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITD------- 57
G+ + L +AEE+A ++ ++E +Y TK F NF K + +++ K+ ++ D
Sbjct: 276 GQPVSLPPEAEEVANYWCGVLESDYATKPRFIENFWKAFLRNLP-KDHPILRDEGHAEAK 334
Query: 58 -------------LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTI 104
+ CDF + Y ++ E +K M+KEEK+ +K + Y +
Sbjct: 335 LATEYKSGERLAGFAACDFSPIKEYLDKQKELKKEMTKEEKEVVKQQKLQEAAPYAYALV 394
Query: 105 DGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWK 163
D +EK+GN R+EPPGLFRGRGEHPK G LKRR+ + D+I+N ++D+ VP PGH WK
Sbjct: 395 DFIREKVGNTRVEPPGLFRGRGEHPKQGMLKRRIFSYDVILNLAEDAPVPRVALPGHAWK 454
Query: 164 EVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQ 223
+V HDN VTWLA + +++ QVKY+ L SK KG++D+ KYE ARKL +++IR++Y
Sbjct: 455 DVFHDNSVTWLAFYRDSINDQVKYMYLAAQSKFKGQQDFLKYEKARKLKLHVDRIRQDYF 514
Query: 224 ADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKP 282
+S RQ A Y ID LALR G EKD D+ ADTVGCCSLRVEH+ EK
Sbjct: 515 KKLESTNSLDRQLGTATYLIDVLALRVGGEKDTDEEADTVGCCSLRVEHLTFDTEKQ--- 571
Query: 283 YVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELME 342
V FDFLGKDSIRY+N V V +VFKN+ F + KK DD+FD++N++ LN HL + M
Sbjct: 572 -EVTFDFLGKDSIRYFNTVKVHPQVFKNIVGFCKGKKLEDDVFDKINSAALNNHLRQFMP 630
Query: 343 GLTAKVFRTYNASITLQQQLNEL 365
GL+AKVFRTYNASITLQ +L +L
Sbjct: 631 GLSAKVFRTYNASITLQNELRKL 653
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 74/112 (66%), Gaps = 1/112 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SVTWLA + +++ QVKY+ L SK KG++D+ KYE ARKL +++IR++Y +S
Sbjct: 461 SVTWLAFYRDSINDQVKYMYLAAQSKFKGQQDFLKYEKARKLKLHVDRIRQDYFKKLEST 520
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEEKDE 593
RQ A Y ID LALR G EKD D +ADTVGCCSLRVEH+ EK E
Sbjct: 521 NSLDRQLGTATYLIDVLALRVGGEKDTDEEADTVGCCSLRVEHLTFDTEKQE 572
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 33/143 (23%)
Query: 373 AEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLK--------------------EKIS 412
E + YN ANRAVA+LCNHQRSVPK H SM ++ +K
Sbjct: 728 GELVQFYNDANRAVAILCNHQRSVPKQHAASMQKMEHQQLMLDEDIRECEEYLAYLKKPP 787
Query: 413 NKRKQ----VKDAERALKDAKKAGESKAMTD-----KKKTALGRLKEQLLKLEVQETDKE 463
+KRK+ + D + + +K M + + + L R + LLK+++ K+
Sbjct: 788 SKRKEHFTYISDVKDFQGNPRKTNVRDGMKEDVCARRLQALLKRRADHLLKIKL----KD 843
Query: 464 ENKTIALGTSKLNYLDPRISVTW 486
+NKT+ALGTSK+NY+DPRI+V +
Sbjct: 844 DNKTVALGTSKINYMDPRITVAF 866
>gi|381143587|gb|AFF58454.1| topoisomerase I, partial [Asaphidion alaskanum]
Length = 243
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 164/227 (72%), Positives = 191/227 (84%), Gaps = 5/227 (2%)
Query: 269 VEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRL 328
VEHI+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRL
Sbjct: 1 VEHIELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRL 60
Query: 329 NTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAV 388
NT ++NKHL+ELME LTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+
Sbjct: 61 NTQIMNKHLNELMEALTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAI 120
Query: 389 LCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKT 443
LCNHQRSVPKSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK
Sbjct: 121 LCNHQRSVPKSHAKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKKK 180
Query: 444 ALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L +LK+QL+KLEVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 MLEKLKDQLVKLEVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 227
>gi|304273979|gb|ADM18427.1| topoisomerase I [Ontholestes murinus]
Length = 241
Score = 321 bits (822), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 160/214 (74%), Positives = 181/214 (84%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK +DDLFDRLNT+V+NKHL
Sbjct: 2 KDDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQL 452
K H KSM LKEKI NKR + DAER +KDA+K + K + DKKK L RLKEQL
Sbjct: 122 KGHQKSMEKLKEKIENKRDAIADAERQVKDAQKDAKHGSVKEKVIYDKKKKQLERLKEQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 182 VKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304273919|gb|ADM18397.1| topoisomerase I [Acylophorus sp. SC-2010]
Length = 241
Score = 321 bits (822), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 158/215 (73%), Positives = 180/215 (83%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
EKD + YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKH
Sbjct: 1 EKDDREYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFIENKAPGDDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L +PD S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNPDDSLSEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI KR + DAER +KDA++ + K + DKKK L R+KEQ
Sbjct: 121 PKGHQKSMEKLKEKIDGKRDSIADAERQVKDAQRDAKHGSVKEKVIYDKKKKQLERMKEQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304273989|gb|ADM18432.1| topoisomerase I [Platydracus cinnamopterus]
Length = 239
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 160/214 (74%), Positives = 182/214 (85%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK +DDLFDRLNT+V+NKHL
Sbjct: 2 KDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLDKLTNADDSLSEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQL 452
K H KSM LKEKI NKR+ + DAER +KDA+K + + K + DKKK L RLKEQL
Sbjct: 122 KGHQKSMEKLKEKIENKREIIADAERQVKDAQKDAKHGSVKEKVIYDKKKKQLERLKEQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 182 AKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|381143729|gb|AFF58525.1| topoisomerase I, partial [Bembidion interventor]
Length = 235
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 159/218 (72%), Positives = 182/218 (83%), Gaps = 5/218 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL
Sbjct: 1 KDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHL 60
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVP
Sbjct: 61 NELMEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVP 120
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQL 452
KSH KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK L RLKEQL
Sbjct: 121 KSHAKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQL 180
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
+KLEV ETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 IKLEVMETDRDENKAIALGTSKLNYLDPRISVAWCKKY 218
>gi|304273967|gb|ADM18421.1| topoisomerase I [Nausicotus spectabilis]
Length = 241
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 157/215 (73%), Positives = 181/215 (84%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF++NK DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMDNKSPGDDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L +PD + AEKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNPDDTVAEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI +KR + DAER +KDA+K + K + DKKK L RL++Q
Sbjct: 121 PKGHQKSMDKLKEKIDSKRDIIADAERQVKDAEKDARRGSVKEKVVYDKKKKQLERLRDQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304273931|gb|ADM18403.1| topoisomerase I [Arrowinus relictus]
Length = 238
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 158/215 (73%), Positives = 180/215 (83%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNADDSISEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGES-----KAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI KR +KDAER +KDA++ + K + DKKK L RLK+Q
Sbjct: 121 PKGHQKSMEKLKEKIDTKRDTIKDAERQVKDAQRDARNGSVKEKQIYDKKKKMLERLKDQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304274013|gb|ADM18444.1| topoisomerase I [Tympanophorus sp. SC-2010]
Length = 241
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 157/215 (73%), Positives = 181/215 (84%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK +DDLFDRLNTSV+NKH
Sbjct: 1 QKDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSKADDLFDRLNTSVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNADDSISEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGE-----SKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI KR+ + DAER +KDA++ + K + DKKK L RL++Q
Sbjct: 121 PKGHQKSMEKLKEKIETKRETIADAERQVKDAQRDAKHGSVREKVVYDKKKKMLERLRDQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|381143597|gb|AFF58459.1| topoisomerase I, partial [Bembidarenas setiventre]
Length = 243
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 164/228 (71%), Positives = 191/228 (83%), Gaps = 5/228 (2%)
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDR 327
R+EHI+LHE+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDR
Sbjct: 1 RIEHIELHEKKDNKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDR 60
Query: 328 LNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVA 387
LNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D S AEKIL+YNRANRAVA
Sbjct: 61 LNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDSLAEKILSYNRANRAVA 120
Query: 388 VLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDK-----KK 442
+LCNHQRSVPKSH KSM LKEKI KR+Q+ DAE+ +K+A++ + ++ +K KK
Sbjct: 121 ILCNHQRSVPKSHAKSMEKLKEKIEQKREQIVDAEKQVKEAQRDAKHGSVKEKVVFDKKK 180
Query: 443 TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L RLKEQL+KLEV ETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 KLLDRLKEQLVKLEVLETDRDENKSIALGTSKLNYLDPRISVAWCKKY 228
>gi|304273973|gb|ADM18424.1| topoisomerase I [Nudobius pugetanus]
Length = 239
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 158/218 (72%), Positives = 180/218 (82%), Gaps = 5/218 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKHL
Sbjct: 2 KDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L + D + AEKILAYNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLDKLTNADDTVAEKILAYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQL 452
K H+KSMG LKEKI KR + DAER + DAK+ + K + DKKK L RL++QL
Sbjct: 122 KGHEKSMGKLKEKIEAKRDAISDAERQVGDAKREAKHGSVKEKLVYDKKKKQLERLRDQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KLE+QETD++ENKTIALGTSKLNYLDPRISV W +
Sbjct: 182 AKLEIQETDRDENKTIALGTSKLNYLDPRISVAWCKKY 219
>gi|304273933|gb|ADM18404.1| topoisomerase I [Astenus sp. SC-2010]
Length = 241
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 158/214 (73%), Positives = 182/214 (85%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKHL
Sbjct: 2 KDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L +PD S +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASWTLQQQLDKLTNPDDSISEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQL 452
K H KSM LKEKI KR +KDAER +KDA++ + + K + +KKK L RL+EQL
Sbjct: 122 KGHQKSMEKLKEKIETKRDNIKDAERQVKDAQRDAKHGSVKEKQIYEKKKKMLERLREQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 182 VKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304273955|gb|ADM18415.1| topoisomerase I [Hadropinus fossor]
Length = 241
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 157/215 (73%), Positives = 180/215 (83%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK +DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI KR + DAER +KDA++ + K + DKKK L RL+EQ
Sbjct: 121 PKGHQKSMEKLKEKIETKRDTIADAERQVKDAQRDAKHGSVKEKVIYDKKKKQLERLREQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304273929|gb|ADM18402.1| topoisomerase I [Tolmerinus sp. SC-2010]
Length = 241
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/219 (70%), Positives = 182/219 (83%), Gaps = 5/219 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAAGDDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L +PD S +E IL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNPDDSLSEMILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI KR+ + DAER +KDA++ + + K + DKKK L R+++Q
Sbjct: 121 PKGHQKSMEKLKEKIEAKRESIADAERQVKDAQRDAKHGSVKEKIIYDKKKKQLERMRDQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W +
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAWCKKY 219
>gi|381143787|gb|AFF58554.1| topoisomerase I, partial [Bembidion parviceps]
Length = 226
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 157/213 (73%), Positives = 179/213 (84%), Gaps = 5/213 (2%)
Query: 283 YVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELME 342
YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELME
Sbjct: 2 YVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELME 61
Query: 343 GLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDK 402
GLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPKSH K
Sbjct: 62 GLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAK 121
Query: 403 SMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEV 457
SM LKEKI KR+Q+ DA++ LKDA++ + + K + DKKK L RLKEQL+KLEV
Sbjct: 122 SMEKLKEKIEQKREQITDAQKQLKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEV 181
Query: 458 QETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
QETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 182 QETDRDENKAIALGTSKLNYLDPRISVAWCKKY 214
>gi|381143761|gb|AFF58541.1| topoisomerase I, partial [Bembidion mckinleyi carneum]
Length = 232
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/215 (73%), Positives = 180/215 (83%), Gaps = 5/215 (2%)
Query: 281 KPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSEL 340
K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+EL
Sbjct: 1 KEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNEL 60
Query: 341 MEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSH 400
MEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPKSH
Sbjct: 61 MEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSH 120
Query: 401 DKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKL 455
KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK L RLKEQL+KL
Sbjct: 121 AKSMEKLKEKIEQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIKL 180
Query: 456 EVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
EVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 EVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 215
>gi|304273941|gb|ADM18408.1| topoisomerase I [Belonuchus mimeticus]
Length = 241
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 155/219 (70%), Positives = 181/219 (82%), Gaps = 5/219 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
EKDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQL++ENK DDLFDRLNT+++NKH
Sbjct: 1 EKDGKNYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLYMENKAPGDDLFDRLNTALMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELM GLTAKVFRTYNAS TLQQQL++L +PD S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMSGLTAKVFRTYNASFTLQQQLDKLTNPDDSISEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQ 451
PK H KSM +KEKI KR + DAER +KDA++ + K + DKKK L RL++Q
Sbjct: 121 PKGHQKSMEKIKEKIDAKRDAISDAERQVKDAQRDAKHGSVKEKVIYDKKKKMLERLRDQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W +
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAWCKKY 219
>gi|381143865|gb|AFF58593.1| topoisomerase I, partial [Bembidion sparsum]
Length = 225
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/215 (73%), Positives = 180/215 (83%), Gaps = 5/215 (2%)
Query: 281 KPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSEL 340
K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+EL
Sbjct: 1 KEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNEL 60
Query: 341 MEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSH 400
MEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPKSH
Sbjct: 61 MEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSH 120
Query: 401 DKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKL 455
KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK L RLKEQL+KL
Sbjct: 121 AKSMEKLKEKIEQKREQIADAQKQVKDAQRDAXHGSVKEKVVYDKKKKMLERLKEQLMKL 180
Query: 456 EVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
EVQETD++ENK IALGTSKLNYLDPRISV W +
Sbjct: 181 EVQETDRDENKAIALGTSKLNYLDPRISVAWCKKY 215
>gi|304273957|gb|ADM18416.1| topoisomerase I [Hadrotes crassus]
Length = 241
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 157/219 (71%), Positives = 180/219 (82%), Gaps = 5/219 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI KR + DAER +KDA++ + K + DKKK L RL+EQ
Sbjct: 121 PKGHQKSMEKLKEKIETKRDTIADAERXVKDAQRDAKHGSVKEKVIYDKKKKQLERLREQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W +
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAWCKKY 219
>gi|304274015|gb|ADM18445.1| topoisomerase I [Velleius dilatatus]
Length = 241
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 156/215 (72%), Positives = 180/215 (83%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKNTGDDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAE 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI +KR+ + D ER +KDA+K + K + DKKK L RLK+Q
Sbjct: 121 PKGHQKSMEKLKEKIDSKREAIADGERQVKDAQKDAKRGSVKEKVLFDKKKKMLQRLKDQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L+KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LVKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304274003|gb|ADM18439.1| topoisomerase I [Quedius molochinus]
Length = 241
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 157/215 (73%), Positives = 179/215 (83%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK +DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI +KR + D ER +KDA++ + K DKKK L RLKEQ
Sbjct: 121 PKGHQKSMEKLKEKIDSKRDAIADGERQVKDAQREAKHGSVKEKVNFDKKKKMLQRLKEQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304274001|gb|ADM18438.1| topoisomerase I [Quedius picipes]
Length = 241
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 157/215 (73%), Positives = 179/215 (83%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK +DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI +KR + D ER +KDA++ + K DKKK L RLKEQ
Sbjct: 121 PKGHQKSMEKLKEKIDSKRDAIADGERQVKDAQREAKHGSVKEKVNFDKKKKMLQRLKEQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304274009|gb|ADM18442.1| topoisomerase I [Tasgius pedator]
Length = 241
Score = 315 bits (806), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 156/218 (71%), Positives = 179/218 (82%), Gaps = 5/218 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K +VV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKHL
Sbjct: 2 KDDKEFVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQL 452
K H KSM LKEKI KR + DAER +KDA++ + K + DKKK L RL+EQL
Sbjct: 122 KGHQKSMEKLKEKIDTKRDNIADAERQVKDAQRDAKHGSVKEKVLYDKKKKQLERLREQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KLE+QETD++ENKTIALGTSKLNYLDPRISV W +
Sbjct: 182 AKLEIQETDRDENKTIALGTSKLNYLDPRISVAWCKKY 219
>gi|304273975|gb|ADM18425.1| topoisomerase I [Ocypus olens]
Length = 241
Score = 314 bits (805), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 156/218 (71%), Positives = 179/218 (82%), Gaps = 5/218 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K +VV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKHL
Sbjct: 2 KDDKDFVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQL 452
K H KSM LKEKI KR + DAER +KDA++ + K + DKKK L RL+EQL
Sbjct: 122 KGHQKSMEKLKEKIETKRDNIADAERQVKDAQRDAKHGSVKEKVIYDKKKKQLERLREQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KLE+QETD++ENKTIALGTSKLNYLDPRISV W +
Sbjct: 182 AKLEIQETDRDENKTIALGTSKLNYLDPRISVAWCKKY 219
>gi|381143919|gb|AFF58620.1| topoisomerase I, partial [Pogonus chalceus]
Length = 236
Score = 314 bits (804), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 162/223 (72%), Positives = 187/223 (83%), Gaps = 5/223 (2%)
Query: 273 QLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSV 332
+LHE+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT +
Sbjct: 1 ELHEQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQI 60
Query: 333 LNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNH 392
+NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D S AEKIL+YNRANRAVA+LCNH
Sbjct: 61 MNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNADDSIAEKILSYNRANRAVAILCNH 120
Query: 393 QRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDK-----KKTALGR 447
QRSVPKSH KSM LKEKI KR+Q+ DA+R +KDA+K + ++ +K KK L +
Sbjct: 121 QRSVPKSHAKSMEKLKEKIDQKREQITDAQRQVKDAQKDAKHGSVKEKLIYDKKKKMLDK 180
Query: 448 LKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
LK+QL +LEVQETD++ENKTIALGTSKLNYLDPRISV W +
Sbjct: 181 LKDQLKRLEVQETDRDENKTIALGTSKLNYLDPRISVAWCKKY 223
>gi|304273999|gb|ADM18437.1| topoisomerase I [Quedius cruentus]
Length = 241
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 155/214 (72%), Positives = 179/214 (83%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF++NK DDLFDRLNT+V+NKHL
Sbjct: 2 KDDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMDNKNTGDDLFDRLNTAVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+ P
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAEP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQL 452
K H KSM LKEKI +KR+ + D ER +KDA++ + K + DKKK L RLKEQL
Sbjct: 122 KGHQKSMEKLKEKIDSKREAIADGERQVKDAQRDAKHGSVKEKVLFDKKKKMLQRLKEQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 182 VKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304274007|gb|ADM18441.1| topoisomerase I [Tasgius morsitans]
Length = 241
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 156/218 (71%), Positives = 179/218 (82%), Gaps = 5/218 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K +VV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKHL
Sbjct: 2 KDDKDFVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQL 452
K H KSM LKEKI KR + DAER +KDA++ + K + DKKK L RL+EQL
Sbjct: 122 KGHQKSMEKLKEKIETKRDTIADAERQVKDAQRDAKHGSVKEKVVYDKKKKQLERLREQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KLE+QETD++ENKTIALGTSKLNYLDPRISV W +
Sbjct: 182 AKLEIQETDRDENKTIALGTSKLNYLDPRISVAWCKKY 219
>gi|62320878|dbj|BAD93853.1| DNA topoisomerase I [Arabidopsis thaliana]
Length = 396
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 173/368 (47%), Positives = 236/368 (64%), Gaps = 20/368 (5%)
Query: 132 GKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQG-QVKYIM 189
G+LK+R+ +I +N K + +P P G +WKEV+HDN VTWLA W + + + KY+
Sbjct: 1 GELKKRIHPCEITLNIGKGAPIPECPIAGERWKEVKHDNTVTWLAFWADPINPKEFKYVF 60
Query: 190 LNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALR 249
L S LKG D +KYE AR L I+ IR Y ++ +K++++RQ AVA Y IDKLALR
Sbjct: 61 LGAGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVKMRQIAVATYLIDKLALR 120
Query: 250 AGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFK 309
AGNEKD+D+ADTVGCC+L+V +++ P + FDFLGKDSI+Y N V VE V+K
Sbjct: 121 AGNEKDDDEADTVGCCTLKVGNVECIP-----PNKIKFDFLGKDSIQYVNTVEVEPLVYK 175
Query: 310 NLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN-ELMDP 368
+ F K +DDLFD L+TS LN HL EL+ GLTAKVFRTYNASITL + L+ E D
Sbjct: 176 AIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDG 235
Query: 369 DFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDA 428
D + +KI+ Y +AN+ VA++CNHQR+V K+H + L +I ++ +K+ + L A
Sbjct: 236 DVT--QKIVVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRA 293
Query: 429 KKAGESKAMTDKKKTAL-------GRLKEQLLKLEVQETD---KEENKTIALGTSKLNYL 478
KK +D KK ++ +Q K+E E D KE+ KT+ALGTSK+NYL
Sbjct: 294 KKGKPPLEGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYL 353
Query: 479 DPRISVTW 486
DPRI+V W
Sbjct: 354 DPRITVAW 361
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L S LKG D +KYE AR L I+ IR Y ++ +
Sbjct: 40 TVTWLAFWADPINPKEFKYVFLGAGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTA 99
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K++++RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 100 KDVKMRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 144
>gi|12851114|dbj|BAB28946.1| unnamed protein product [Mus musculus]
Length = 295
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/262 (62%), Positives = 200/262 (76%), Gaps = 6/262 (2%)
Query: 231 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDF 289
M+ RQ AVALYFIDKLALR GNEK+E + ADTVGCCSLRVEHI+LH G+ +VV DF
Sbjct: 1 MKKRQLAVALYFIDKLALRTGNEKEEGETADTVGCCSLRVEHIRLHAPAGGQEHVVELDF 60
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRY N V VEK VF+NLQ F+E+K DDLFD L TS LNKHL +LMEGLTAKVF
Sbjct: 61 LGKDSIRYKNHVTVEKLVFQNLQHFMEDKDPRDDLFDALTTSSLNKHLQDLMEGLTAKVF 120
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS+TLQ+QL L + S K+LAYNRANRAVAVLCNHQR+VPK+ +KSM L++
Sbjct: 121 RTYNASVTLQEQLRVLTRAEDSVTCKVLAYNRANRAVAVLCNHQRAVPKTFEKSMQTLQK 180
Query: 410 KISNKRKQVKDAERALK----DAKKAGESKAMTD-KKKTALGRLKEQLLKLEVQETDKEE 464
KI K+ QV +A+ L+ D + G+SK + +K+ L +L+EQL +L + TDKEE
Sbjct: 181 KIETKKAQVAEAQVELQKAETDLRMRGDSKPKSFLQKQRRLLKLEEQLARLCAKATDKEE 240
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
NK +ALGT+KLNYLDPRIS+ W
Sbjct: 241 NKQVALGTAKLNYLDPRISIAW 262
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/46 (80%), Positives = 41/46 (89%), Gaps = 1/46 (2%)
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLH 588
M+ RQ AVALYFIDKLALR GNEK+E + ADTVGCCSLRVEHI+LH
Sbjct: 1 MKKRQLAVALYFIDKLALRTGNEKEEGETADTVGCCSLRVEHIRLH 46
>gi|260784949|ref|XP_002587526.1| hypothetical protein BRAFLDRAFT_237079 [Branchiostoma floridae]
gi|229272674|gb|EEN43537.1| hypothetical protein BRAFLDRAFT_237079 [Branchiostoma floridae]
Length = 299
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 174/306 (56%), Positives = 210/306 (68%), Gaps = 27/306 (8%)
Query: 196 LKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKD 255
L+GEKDW KYETARKL K +++IR Y+ +WKSKEMRIRQRAVALYFIDKLALRAGNEKD
Sbjct: 1 LQGEKDWMKYETARKLHKCVDRIRAQYREEWKSKEMRIRQRAVALYFIDKLALRAGNEKD 60
Query: 256 EDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLF 314
D+ ADTVGCCSLRVEHI LH E +GK +VV FDFLGKDSIRY+N V VEK+VFKNL ++
Sbjct: 61 SDEAADTVGCCSLRVEHINLHREHEGKEFVVEFDFLGKDSIRYHNFVAVEKKVFKNL-VW 119
Query: 315 VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSE-- 372
+ GS L L + +L + L GL V + ++ DP FS
Sbjct: 120 SPDHTGSCLL---LGSYLLCCGVQGLQVGLVCTVKQCLCSA-----------DPPFSPPG 165
Query: 373 ----AEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDA 428
A KIL+YNRANRAVA+LCNHQRSVPK+ +KSM NL+ K+ K ++ L
Sbjct: 166 EDSVAAKILSYNRANRAVAILCNHQRSVPKTFEKSMSNLQAKVGRKHHLIRICHIYLATC 225
Query: 429 KKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLA 488
+ + M ++KK + RL+EQL+KLEVQ TDKEENK IALGTSKLNYLDPRISV
Sbjct: 226 R-----QMMLERKKKQMERLEEQLMKLEVQATDKEENKEIALGTSKLNYLDPRISVACGK 280
Query: 489 SWTENV 494
S E +
Sbjct: 281 SHVEKI 286
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/89 (75%), Positives = 76/89 (85%), Gaps = 1/89 (1%)
Query: 509 LKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKD 568
L+GEKDW KYETARKL K +++IR Y+ +WKSKEMRIRQRAVALYFIDKLALRAGNEKD
Sbjct: 1 LQGEKDWMKYETARKLHKCVDRIRAQYREEWKSKEMRIRQRAVALYFIDKLALRAGNEKD 60
Query: 569 EDQ-ADTVGCCSLRVEHIQLHEEKDEKKI 596
D+ ADTVGCCSLRVEHI LH E + K+
Sbjct: 61 SDEAADTVGCCSLRVEHINLHREHEGKEF 89
>gi|310831141|ref|YP_003969784.1| putative DNA topoisomerase IB [Cafeteria roenbergensis virus
BV-PW1]
gi|309386325|gb|ADO67185.1| putative DNA topoisomerase IB [Cafeteria roenbergensis virus
BV-PW1]
Length = 534
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 189/492 (38%), Positives = 285/492 (57%), Gaps = 36/492 (7%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G ++ L D EE T +A+ I+ Y F NF + + + + + D + DF
Sbjct: 37 GNKITLKPDIEEKLTAFAKYIDTAYYENPKFIKNFFNEIKPNFPDMS---LNDFKEFDFS 93
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+ Y ++ E++ SKEEK+KIK++ + K Y IDG ++K+GNF+IEPPG+F G
Sbjct: 94 LIKKYLNEQKEKKLNKSKEEKEKIKEQMTELDKPYASLQIDGGEQKVGNFKIEPPGIFLG 153
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP--PGHKWKEVRHDNQVTWLASWTENVQ 182
RG HPK+GK KRR+ ED+I+N K++ +P P P KW ++ H + WLA+W + +
Sbjct: 154 RGSHPKIGKWKRRIYPEDVILNLDKNAPIPKPHLYPNRKWNKIVHQTEAIWLATWKDEIT 213
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
G+ KY+ + S K + D +K++ ARKL I KIR + D S ++ RQ A ALY
Sbjct: 214 GKNKYVFPSVESSFKADSDKEKFDLARKLKNKIGKIRTQFTEDMSSTDIVTRQYATALYL 273
Query: 243 IDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEV 301
ID+LA+R G +KD +++ADTVG SLRVEHI L+ + V DFLGKDS+R+
Sbjct: 274 IDELAIRVGGKKDAKEEADTVGVTSLRVEHITLNNNNN-----VKLDFLGKDSVRFCKVF 328
Query: 302 PVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
V V+ NL+ F ENK D+FD++ ++ LN +L M+ L+AKV+RT+ AS T Q++
Sbjct: 329 SVSDIVWNNLKEFTENKTKKTDIFDKITSNSLNNYLKSFMKDLSAKVWRTFKASTTFQKE 388
Query: 362 LNELMDPD---FSEAEKI----LAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNK 414
LN++ D F+E+EKI +N AN VA+LCNHQ+ + KS D E+I+
Sbjct: 389 LNKVKTEDIKHFNESEKINYLLSKFNYANTQVALLCNHQKGISKSFD-------EQINKI 441
Query: 415 RKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSK 474
+ Q+K+ + AK + T+K A +L+ K + K ++LGTSK
Sbjct: 442 KNQIKELRKKKTKAKTKEKQAQYTNKILLAKSKLET-----------KTKMKNVSLGTSK 490
Query: 475 LNYLDPRISVTW 486
NY+DPRI V++
Sbjct: 491 TNYIDPRIIVSF 502
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Query: 486 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 545
WLA+W + + G+ KY+ + S K + D +K++ ARKL I KIR + D S ++
Sbjct: 204 WLATWKDEITGKNKYVFPSVESSFKADSDKEKFDLARKLKNKIGKIRTQFTEDMSSTDIV 263
Query: 546 IRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDEK 594
RQ A ALY ID+LA+R G +KD +++ADTVG SLRVEHI L+ + K
Sbjct: 264 TRQYATALYLIDELAIRVGGKKDAKEEADTVGVTSLRVEHITLNNNNNVK 313
>gi|304274011|gb|ADM18443.1| topoisomerase I [Thinopinus pictus]
Length = 241
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 155/213 (72%), Positives = 178/213 (83%), Gaps = 5/213 (2%)
Query: 279 DGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLS 338
D K +VV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK +DDLFDRLNT+V+NKHL+
Sbjct: 3 DDKEHVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKHLN 62
Query: 339 ELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPK 398
ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+VPK
Sbjct: 63 ELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVPK 122
Query: 399 SHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQLL 453
H KSM LKEKI KR + DAER +KDA++ + K + DKKK L RL+EQL
Sbjct: 123 GHQKSMEKLKEKIETKRDTIADAERQVKDAQRDAKHGSVKEKVIYDKKKKQLERLREQLA 182
Query: 454 KLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 183 KLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|189094065|gb|ACD75860.1| topoisomerase I [Prolixocupes lobiceps]
Length = 229
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 153/212 (72%), Positives = 178/212 (83%), Gaps = 5/212 (2%)
Query: 284 VVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEG 343
VV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK G DDLFDRLNTS+LNKHL+ELMEG
Sbjct: 1 VVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFIENKSGEDDLFDRLNTSILNKHLNELMEG 60
Query: 344 LTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKS 403
LTAKVFRTYNAS TLQQQL++L + D S +EK+L+YNRANRAVAVLCNHQRSVPK H+KS
Sbjct: 61 LTAKVFRTYNASFTLQQQLDQLTNADDSVSEKMLSYNRANRAVAVLCNHQRSVPKGHEKS 120
Query: 404 MGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQ 458
M LKEKI KR Q+ + E+ +KDA+K + + K + DKKK L RL+EQL+KLEV
Sbjct: 121 MEKLKEKIGTKRDQIAEMEKQVKDAQKDAKRGSVKEKVVYDKKKKHLERLREQLVKLEVA 180
Query: 459 ETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
ETD++ENK+IALGTSKLNYLDPRI+V W +
Sbjct: 181 ETDRDENKSIALGTSKLNYLDPRITVAWCKKY 212
>gi|304273937|gb|ADM18406.1| topoisomerase I [Atanygnathus sp. SC-2010]
Length = 241
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 152/214 (71%), Positives = 180/214 (84%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KDGK +V+ FDFLGKDSIRYYNE+PVEKRVFKNLQLF+ENK DDLFDRL T+VLNKHL
Sbjct: 2 KDGKQFVIVFDFLGKDSIRYYNELPVEKRVFKNLQLFIENKSAGDDLFDRLXTTVLNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELM+GLTAKVFRTYNAS TLQ+QLN+L +PD + KIL+YNRANRAVA+LCNHQR++P
Sbjct: 62 NELMDGLTAKVFRTYNASFTLQEQLNKLTNPDDNVQAKILSYNRANRAVAILCNHQRAIP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKA-----GESKAMTDKKKTALGRLKEQL 452
KSH KSM LKEKI +K++ + DA+R +DA++A ++K DKKK L RLKEQL
Sbjct: 122 KSHQKSMEALKEKIKSKKEAITDAQRQAEDARRAAKDGSAKNKIGYDKKKRMLDRLKEQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KLE+QETDK+ENKTIALGTSKLNYLDPRI+V W
Sbjct: 182 NKLEIQETDKDENKTIALGTSKLNYLDPRITVAW 215
>gi|304273983|gb|ADM18429.1| topoisomerase I [Paederus sp. SC-2010]
Length = 241
Score = 311 bits (797), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 156/214 (72%), Positives = 178/214 (83%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K Y+V FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKHL
Sbjct: 2 KDDKDYLVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASWTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGE-----SKAMTDKKKTALGRLKEQL 452
K H KSM LKEKI K+ ++D ER +KDA+K + K + DKKK L RLKEQL
Sbjct: 122 KGHQKSMEKLKEKIETKKDAIRDGERQVKDAQKDAKHGSVREKQIYDKKKKMLERLKEQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 182 AKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|381143915|gb|AFF58618.1| topoisomerase I, partial [Oopterus helmsi]
Length = 228
Score = 311 bits (796), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 163/220 (74%), Positives = 187/220 (85%), Gaps = 5/220 (2%)
Query: 276 EEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNK 335
E+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+++NK
Sbjct: 1 EQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAIMNK 60
Query: 336 HLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRS 395
HL+ELMEGLTAKVFRTYNAS TLQQQL+EL + + S+AEKIL+YNRANRAVA+LCNHQRS
Sbjct: 61 HLNELMEGLTAKVFRTYNASWTLQQQLDELTNGEDSDAEKILSYNRANRAVAILCNHQRS 120
Query: 396 VPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKE 450
VPKSH KSM LKEKI KR Q+ DA+R +KDA+K + + K + DKKK L RLKE
Sbjct: 121 VPKSHAKSMEKLKEKIDQKRDQIGDAQRQVKDAQKDAKHGSVKEKVIYDKKKKLLERLKE 180
Query: 451 QLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
QL+KLEVQETD++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 QLVKLEVQETDRDENKSIALGTSKLNYLDPRISVAWCKKY 220
>gi|304273965|gb|ADM18420.1| topoisomerase I [Naddia sp. SC-2010]
Length = 241
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 155/215 (72%), Positives = 180/215 (83%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+K K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK +DDLFDRLNT+V+NKH
Sbjct: 1 QKXDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI KR+ + AER +KDA+K + + K + DKKK L RLK+Q
Sbjct: 121 PKGHQKSMEKLKEKIEAKRESIAXAERQVKDAQKDAKHGSVKEKVIYDKKKKMLERLKDQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTI+LGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDRDENKTISLGTSKLNYLDPRISVAW 215
>gi|304273993|gb|ADM18434.1| topoisomerase I [Platyprosopus sp. SC-2010]
Length = 241
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 155/214 (72%), Positives = 176/214 (82%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT V+NKHL
Sbjct: 2 KDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTGVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLDKLTNADDSISEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQL 452
K H KSM LKEKI + + DAER +KDA+K + K + D+KK L RLK+QL
Sbjct: 122 KGHQKSMEKLKEKIETXKDAIADAERQVKDAQKDARHGSVKEKQIYDRKKKMLERLKDQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 182 SKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304273947|gb|ADM18411.1| topoisomerase I [Dinothenarus saphyrinus]
Length = 241
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 157/215 (73%), Positives = 179/215 (83%), Gaps = 6/215 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKHL
Sbjct: 2 KDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKHL 61
Query: 338 SE-LMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
+E LMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 62 NEELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAV 121
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI KR + DAER +KDA++ + + K + DKKK L RL+EQ
Sbjct: 122 PKGHQKSMEKLKEKIEAKRDTIADAERQVKDAQRDAKHGSVKEKVIYDKKKKQLERLREQ 181
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 182 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 216
>gi|304273963|gb|ADM18419.1| topoisomerase I [Indoquedius sp. SC-2010]
Length = 241
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 154/215 (71%), Positives = 177/215 (82%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FD LGKDSIRYYNEVPVE RVFKNLQLF+ENK DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKDYVVVFDLLGKDSIRYYNEVPVEXRVFKNLQLFMENKAPGDDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI NKR + DAER +K A++ + K + DKKK L RL++Q
Sbjct: 121 PKGHQKSMEKLKEKIDNKRDAIADAERQVKSAQRDASKGSVKEKVIYDKKKKQLERLRDQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304274005|gb|ADM18440.1| topoisomerase I [Quedius suturalis]
Length = 241
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 155/215 (72%), Positives = 177/215 (82%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK +DDLFDRLNT+V+NKH
Sbjct: 1 QKDDLEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAK FRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKCFRTYNASFTLQQQLDKLTNEDDSLSEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI +KR + D ER +KDA++ + K DKKK L RLKEQ
Sbjct: 121 PKGHQKSMEKLKEKIDSKRDAIADGERQVKDAQREAKHGSVKEKVNFDKKKKMLQRLKEQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304273981|gb|ADM18428.1| topoisomerase I [Othius punctulatus]
Length = 241
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 157/214 (73%), Positives = 177/214 (82%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNTSV+NK L
Sbjct: 2 KDEKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTSVMNKQL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L + S +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLDKLTNEGDSLSEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGE-----SKAMTDKKKTALGRLKEQL 452
K H KSM LKEKI KR+ + DAER +KDA+K + K + DKKK L RLK+QL
Sbjct: 122 KGHQKSMEKLKEKIDAKRESISDAERQVKDAQKDAKHGSVREKQIYDKKKKMLERLKDQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 182 CKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|381143935|gb|AFF58628.1| topoisomerase I, partial [Thalassotrechus barbarae]
Length = 237
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 165/220 (75%), Positives = 185/220 (84%), Gaps = 5/220 (2%)
Query: 276 EEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNK 335
E+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NK
Sbjct: 1 EQKDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNK 60
Query: 336 HLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRS 395
HLSELMEGLTAKVFRTYNAS TLQQQL+EL + D S AEKIL+YNRANRAVA+LCNHQRS
Sbjct: 61 HLSELMEGLTAKVFRTYNASWTLQQQLDELTNADDSIAEKILSYNRANRAVAILCNHQRS 120
Query: 396 VPKSHDKSMGNLKEKISNKRKQVKDAER----ALKDAKKAG-ESKAMTDKKKTALGRLKE 450
VPKSH KSM LKEKI KR+Q+ DA+R ALKDAK+ + K + +KKK L +LK+
Sbjct: 121 VPKSHAKSMELLKEKIDQKREQIADAQRQVKDALKDAKRGSVKEKLIHEKKKKMLDKLKD 180
Query: 451 QLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
QL KLEVQETD++ENKTIALGTSKLNYLDPRISV W +
Sbjct: 181 QLKKLEVQETDRDENKTIALGTSKLNYLDPRISVAWCKKY 220
>gi|304273953|gb|ADM18414.1| topoisomerase I [Gastrisus sp. SC-2010]
Length = 241
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 157/215 (73%), Positives = 181/215 (84%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L +PD + AEKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNPDDTVAEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI KR + DAER +KDA+K + + K + +KKK L RL++Q
Sbjct: 121 PKGHQKSMDKLKEKIDTKRDTIADAERQVKDAEKDARRGSVKEKVVYEKKKKQLERLRDQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304273945|gb|ADM18410.1| topoisomerase I [Cafius seminitens]
Length = 238
Score = 309 bits (792), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 154/214 (71%), Positives = 178/214 (83%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
K K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+++NKHL
Sbjct: 2 KGDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTALMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELM GLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMSGLTAKVFRTYNASFTLQQQLDKLTNADDSISEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQL 452
K H KSM LKEKI KR+ + DAER +KDA++ + + K + DKKK L RL+EQL
Sbjct: 122 KGHQKSMEKLKEKIEVKREAISDAERQVKDAQRDAKHGSVKEKVIYDKKKKMLERLREQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 182 TKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304273987|gb|ADM18431.1| topoisomerase I [Hesperopalpus sp. SC-2010]
Length = 241
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 153/214 (71%), Positives = 177/214 (82%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+++NKHL
Sbjct: 2 KDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTTLMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELM GLTAKVFRTYNAS TLQ QL++L + D S +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMAGLTAKVFRTYNASFTLQXQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQL 452
K+H KSM LKEKI KR +KDAER +KDA+K + K + DKKK L R ++QL
Sbjct: 122 KTHQKSMEKLKEKIDQKRLAIKDAERQVKDAQKDAKHGSVKEKVVYDKKKKLLERFRDQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KLE+QETD++ENKTI+LGTSKLNYLDPRISV W
Sbjct: 182 AKLEIQETDRDENKTISLGTSKLNYLDPRISVAW 215
>gi|304273951|gb|ADM18413.1| topoisomerase I [Elecatopselaphus sp. SC-2010]
Length = 241
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 157/214 (73%), Positives = 180/214 (84%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKHL
Sbjct: 2 KDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L +PD S AEKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLDKLTNPDDSVAEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQL 452
K H KSM LKEKI KR + DAER +KDA+K + + K + +KKK L R+++QL
Sbjct: 122 KGHQKSMEKLKEKIDAKRDTIADAERQVKDAEKDARRGSVKEKVVYEKKKKQLERMRDQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 182 AKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304273959|gb|ADM18417.1| topoisomerase I [Hesperus sp. SC-2010]
Length = 241
Score = 308 bits (788), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 154/215 (71%), Positives = 178/215 (82%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+++NKH
Sbjct: 1 QKDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTALMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELM GLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMGGLTAKVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI KR+ + DAER +KDA+K + K + DKKK L RL++Q
Sbjct: 121 PKGHQKSMEKLKEKIEAKREAISDAERQVKDAQKDAKRGSVKEKVVYDKKKKMLERLRDQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLD RISV W
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDLRISVAW 215
>gi|380714827|gb|AFE02786.1| topoisomerase I, partial [Bembidion americanum]
Length = 227
Score = 308 bits (788), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 152/210 (72%), Positives = 178/210 (84%), Gaps = 5/210 (2%)
Query: 286 CFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLT 345
FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLT
Sbjct: 1 VFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLT 60
Query: 346 AKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMG 405
AKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM
Sbjct: 61 AKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSME 120
Query: 406 NLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQET 460
LKEKI KR+Q+++A++ +KDA++ + + K + DKKK L RLKEQL+KLEVQET
Sbjct: 121 KLKEKIEQKREQIEEAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQET 180
Query: 461 DKEENKTIALGTSKLNYLDPRISVTWLASW 490
D++ENK+IALGTSKLNYLDPRISV W +
Sbjct: 181 DRDENKSIALGTSKLNYLDPRISVAWCKKY 210
>gi|304273991|gb|ADM18433.1| topoisomerase I [Platydracus sp. SC-2010]
Length = 241
Score = 307 bits (787), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 153/214 (71%), Positives = 178/214 (83%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK +DDLFDRLNT+V+NKHL
Sbjct: 2 KDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLDKLTNADDSLSEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTA-----LGRLKEQL 452
K H KSM LKEKI KR+ + DAER +KDA++ + ++ +K L R+KEQL
Sbjct: 122 KGHQKSMEKLKEKIDTKRETIADAERQVKDAQRDAKHGSVKEKVVYEKKKKLLQRMKEQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 182 AKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304273985|gb|ADM18430.1| topoisomerase I [Philonthus splendens]
Length = 241
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 153/215 (71%), Positives = 177/215 (82%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+++NKH
Sbjct: 1 QKDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTALMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELM GLTAKVFRTYNAS TLQQQL++L + S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMPGLTAKVFRTYNASFTLQQQLDKLTNEGDSISEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI KR+ + DAE +KDA++ + K + DKKK L RL+EQ
Sbjct: 121 PKGHQKSMEKLKEKIDQKREAIADAEHQVKDAQRDAKHGSVKEKVVYDKKKKMLERLREQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304273997|gb|ADM18436.1| topoisomerase I [Quedius antipodus]
Length = 241
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 158/219 (72%), Positives = 180/219 (82%), Gaps = 5/219 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL +L + D S AEKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLEKLTNEDDSIAEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI K+ + DAER +KDA+K + + K + +KKK L RL+EQ
Sbjct: 121 PKGHQKSMEALKEKIQTKKDTIADAERQVKDAQKDAKRGSVKEKVVFEKKKKMLDRLREQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L KLE+QETDK+ENKTIALGTSKLNYLDPRISV W +
Sbjct: 181 LAKLEIQETDKDENKTIALGTSKLNYLDPRISVAWCKKY 219
>gi|304273971|gb|ADM18423.1| topoisomerase I [Nordus fungicola]
Length = 241
Score = 306 bits (784), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 156/215 (72%), Positives = 180/215 (83%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
EKD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKH
Sbjct: 1 EKDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L + D + AEKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNADDTVAEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI KR + DAER +KDA+K + + K + +KKK L R+++Q
Sbjct: 121 PKGHQKSMEKLKEKIDAKRDSIADAERQVKDAEKDARRGSVKEKVVYEKKKKQLERMRDQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|381143917|gb|AFF58619.1| topoisomerase I, partial [Phrypeus rickseckeri]
Length = 218
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 158/216 (73%), Positives = 185/216 (85%), Gaps = 5/216 (2%)
Query: 276 EEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNK 335
E+KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NK
Sbjct: 1 EQKDGKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTXIMNK 60
Query: 336 HLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRS 395
HL+ELMEGLTAKVFRTYNAS TLQQQL+EL + D S AEKIL+YNRANRAVA+LCNHQRS
Sbjct: 61 HLNELMEGLTAKVFRTYNASWTLQQQLDELTNEDDSLAEKILSYNRANRAVAILCNHQRS 120
Query: 396 VPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKE 450
VPKSH KSM LKEKI K++Q+ DA++ +K+A+K + + K + DKKK L ++KE
Sbjct: 121 VPKSHAKSMEKLKEKIEQKKEQIADAQKQVKEAQKDAKHGSVKEKIIYDKKKKMLEKMKE 180
Query: 451 QLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
QL++LEVQETD++ENK+IALGTSKLNYLDPRISV W
Sbjct: 181 QLVRLEVQETDRDENKSIALGTSKLNYLDPRISVAW 216
>gi|304274019|gb|ADM18447.1| topoisomerase I [Xenopygus analis]
Length = 241
Score = 305 bits (780), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 156/219 (71%), Positives = 181/219 (82%), Gaps = 5/219 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L + D + AEKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDTVAEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI KR + DAER +KDA+K + + K + +KKK L RL++Q
Sbjct: 121 PKGHQKSMEKLKEKIDAKRDTIADAERQVKDAEKDARRGSVKEKVVYEKKKKQLERLRDQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W +
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAWCKKY 219
>gi|304274017|gb|ADM18446.1| topoisomerase I [Xanthopygus sp. SC-2010]
Length = 241
Score = 304 bits (779), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 156/215 (72%), Positives = 180/215 (83%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L + D + AEKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNADDTVAEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI KR + DAER +KDA+K + + K + +KKK L RL++Q
Sbjct: 121 PKGHQKSMEKLKEKIDAKRDVIADAERQVKDAEKDARRGSVKEKVVYEKKKKQLERLRDQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304273923|gb|ADM18399.1| topoisomerase I [Amblyopinus emarginatus]
Length = 241
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/215 (72%), Positives = 181/215 (84%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL++L + + S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLDKLTNEEDSISEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQ 451
PK H KSM LKEKI K++ + DAER +KDA+K + + K + +KKK L R++EQ
Sbjct: 121 PKGHQKSMEALKEKIQAKKESIADAERQVKDAQKDAKRGSVKEKVVFEKKKKMLDRMREQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETDK+ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDKDENKTIALGTSKLNYLDPRISVAW 215
>gi|304273977|gb|ADM18426.1| topoisomerase I [Oligotergus sp. SC-2010]
Length = 241
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/214 (72%), Positives = 179/214 (83%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKHL
Sbjct: 2 KDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTAVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L + D + AEKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDTVAEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQL 452
K H KSM LKEKI KR + DAER +KDA+K + + K + +KKK L R+++QL
Sbjct: 122 KGHQKSMEKLKEKIDAKRDSIADAERQVKDAEKDARRGSVKEKVVYEKKKKQLERMRDQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 182 AKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|304273943|gb|ADM18409.1| topoisomerase I [Bolitogyrus sp. SC-2010]
Length = 241
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/214 (71%), Positives = 180/214 (84%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV F FLGKDSIRYYNEVPVEKRVFKNLQLF+ENK +DDLFDRLNT+V+NKHL
Sbjct: 2 KDDKDYVVVFXFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAAADDLFDRLNTAVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L +PD + +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLDKLTNPDDTLSEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQL 452
K H KSM LKEKI KR+ + DAER +KDA++ + + K + +KKK L RL++ L
Sbjct: 122 KGHQKSMEKLKEKIDTKRETIADAERQVKDAQRDAKRGSVKEKVVYEKKKKMLERLRDXL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 182 AKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|381143921|gb|AFF58621.1| topoisomerase I, partial [Serranillus sp. DRM-2012]
Length = 220
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 152/209 (72%), Positives = 174/209 (83%), Gaps = 5/209 (2%)
Query: 287 FDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTA 346
F FLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTA
Sbjct: 1 FXFLGKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLTELMEGLTA 60
Query: 347 KVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGN 406
KVFRT+NAS TLQ+QL EL + D S AEKIL+YNRANRAVAVLCNHQRSVPKSH KSM
Sbjct: 61 KVFRTFNASSTLQEQLIELTNEDDSIAEKILSYNRANRAVAVLCNHQRSVPKSHAKSMEK 120
Query: 407 LKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETD 461
LKEKI KR+Q+ DA++ +KDA+K + + K + KKK L R+KEQL+KLEVQETD
Sbjct: 121 LKEKIDQKREQIADAQKQVKDAQKDAXHGSVKEKVLYXKKKKMLERMKEQLVKLEVQETD 180
Query: 462 KEENKTIALGTSKLNYLDPRISVTWLASW 490
++ENKTIALGTSKLNYLDPRISV W +
Sbjct: 181 RDENKTIALGTSKLNYLDPRISVAWCKKY 209
>gi|304273927|gb|ADM18401.1| topoisomerase I [Anchocerus sp. SC-2010]
Length = 241
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 152/219 (69%), Positives = 178/219 (81%), Gaps = 5/219 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFIENKSPGDDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL +L + + S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLEKLTNAEDSISEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTA-----LGRLKEQ 451
PK H KSM LKEKI KR+ + DAER +KDA+K + ++ +K L RL++Q
Sbjct: 121 PKGHQKSMEKLKEKIDAKRETISDAERQVKDAQKDAKHGSVKEKVVYEKKKKQLERLRDQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W +
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAWCKKY 219
>gi|304273969|gb|ADM18422.1| topoisomerase I [Neobisnius occidentoides]
Length = 239
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/212 (72%), Positives = 173/212 (81%), Gaps = 3/212 (1%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV FDFLGKDS RYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+++NKHL
Sbjct: 2 KDDKDYVVVFDFLGKDSXRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTALMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELM GLTAKVFRTYNAS TLQQQL +L + D S +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMPGLTAKVFRTYNASFTLQQQLEKLTNADDSISEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGES---KAMTDKKKTALGRLKEQLLK 454
K H KSM LKEKI KR+ + +AER +K K S K + DKKK L RL+EQL K
Sbjct: 122 KGHQKSMEKLKEKIEAKREAIAEAERQVKGCKDKHGSVKEKVVYDKKKKMLARLREQLTK 181
Query: 455 LEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
LE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 182 LEIQETDRDENKTIALGTSKLNYLDPRISVAW 213
>gi|304273925|gb|ADM18400.1| topoisomerase I [Anaquedius vernix]
Length = 241
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/215 (71%), Positives = 176/215 (81%), Gaps = 5/215 (2%)
Query: 277 EKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKH 336
+KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKH
Sbjct: 1 QKDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKH 60
Query: 337 LSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSV 396
L+ELMEGLTAKVFRTYNAS TLQQQL +L + D S +EKIL+YNRANRAVA+LCNHQR+V
Sbjct: 61 LNELMEGLTAKVFRTYNASFTLQQQLEKLTNADDSISEKILSYNRANRAVAILCNHQRAV 120
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTA-----LGRLKEQ 451
PK H KSM LKEKI KR + DAER +KDA+K + ++ +K L RL++Q
Sbjct: 121 PKGHQKSMEKLKEKIEAKRDIIADAERQVKDAQKDAKHGSVKEKVVYEKKKKQLERLRDQ 180
Query: 452 LLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
L KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 181 LAKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|342180523|emb|CCC89999.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 375
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 154/313 (49%), Positives = 209/313 (66%), Gaps = 9/313 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G++ ++ + EE+AT +A + EH+Y + F NF WRK + + I L CDF
Sbjct: 68 GRKFVMTPEEEEVATMFAVLREHDYYRNQIFRENFFLSWRKILDRRPHP-IRSLELCDFT 126
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + +++ E++ + ++EEKK++K + + Y C DG +E++ NFR+EPPGLFRG
Sbjct: 127 PIYEWHLREREKKLSRTREEKKELKLIADKEAEPYKWCIWDGRREQVANFRVEPPGLFRG 186
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LK+R+ EDI+IN ++S +P PP GH+W V H++ VTWLA W ENV
Sbjct: 187 RGCHPKMGTLKKRLVPEDIVINIGEESPIPTPPAGHRWGAVIHNHNVTWLAMWKENVSNL 246
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+ML PSS +KG+ D K+E AR+L I++IR++Y D+KS ++R QRAVA YFID
Sbjct: 247 NKYVMLAPSSAVKGQSDLMKFEKARELKDHIDEIRKSYHKDFKSGDLRTAQRAVATYFID 306
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKP-YVVCFDFLGKDSIRYYNEVP 302
KLALR GNEK ED+ADTVGCCSLR EHI+L KP VV FDFLGKDSIRY NE
Sbjct: 307 KLALRVGNEKCQEDEADTVGCCSLRKEHIEL------KPNNVVKFDFLGKDSIRYENEAV 360
Query: 303 VEKRVFKNLQLFV 315
V V+ LQ F
Sbjct: 361 VLPEVYALLQKFT 373
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/106 (62%), Positives = 81/106 (76%), Gaps = 1/106 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W ENV KY+ML PSS +KG+ D K+E AR+L I++IR++Y D+KS
Sbjct: 232 NVTWLAMWKENVSNLNKYVMLAPSSAVKGQSDLMKFEKARELKDHIDEIRKSYHKDFKSG 291
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQL 587
++R QRAVA YFIDKLALR GNEK ED+ADTVGCCSLR EHI+L
Sbjct: 292 DLRTAQRAVATYFIDKLALRVGNEKCQEDEADTVGCCSLRKEHIEL 337
>gi|381143599|gb|AFF58460.1| topoisomerase I, partial [Bembidion (Hoquedela) sp. 1 DRM-2012]
Length = 205
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 151/203 (74%), Positives = 172/203 (84%), Gaps = 5/203 (2%)
Query: 289 FLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKV 348
FLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKV
Sbjct: 1 FLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNELMEGLTAKV 60
Query: 349 FRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLK 408
FRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM LK
Sbjct: 61 FRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLK 120
Query: 409 EKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKE 463
EKI KR+QV DA++ +KDA++ + + K + DKKK L RLKEQL+KLEVQETD++
Sbjct: 121 EKIEQKREQVTDAQKQVKDAQRDAKHGSVKEKVVYDKKKKTLERLKEQLMKLEVQETDRD 180
Query: 464 ENKTIALGTSKLNYLDPRISVTW 486
ENK IALGTSKLNYLDP ISV W
Sbjct: 181 ENKAIALGTSKLNYLDPXISVAW 203
>gi|304273921|gb|ADM18398.1| topoisomerase I [Algon sp. SC-2010]
Length = 241
Score = 301 bits (771), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 150/214 (70%), Positives = 177/214 (82%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+E+K +DDLFDRLNT+V+NKHL
Sbjct: 2 KDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMESKAPADDLFDRLNTAVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L + D S +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLDKLTNEDDSISEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTA-----LGRLKEQL 452
K H KSM LKEKI KR + DAER +KDA++ + ++ +K L RL++QL
Sbjct: 122 KGHQKSMEKLKEKIDTKRDTIADAERQVKDAQREAKHGSVKEKVVYEKKKKLLERLRDQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KLE+QETD++ENKTI+LGTSKLNYLDPRISV W
Sbjct: 182 AKLEIQETDRDENKTISLGTSKLNYLDPRISVAW 215
>gi|408403066|ref|YP_006861049.1| DNA topoisomerase IB [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408363662|gb|AFU57392.1| DNA topoisomerase IB [Candidatus Nitrososphaera gargensis Ga9.2]
Length = 549
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 191/505 (37%), Positives = 293/505 (58%), Gaps = 44/505 (8%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+++ L++D EE+ +A+ + Y F NFM D R + EK R + + DF
Sbjct: 28 GEKLALNRDQEELIYAWAKKKDTHYVQDPVFQENFMSDLRPLLPEKFRNIT--IKDIDFS 85
Query: 65 KMHAYFVQKSEER---------KAMSKEEKKKI----KDENEAITKEYGVCTIDGHKEKI 111
AY + E+R K ++KEEKKKI K E E + YG +DG + I
Sbjct: 86 A--AYRLADEEKRMKEQEKERYKTLAKEEKKKISLAKKAERERLKATYGKAVVDGVEVDI 143
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
N+ +EPPGLF GRG+HP G+ K RV+ +D+ +N +++ P P WKE+ HD+
Sbjct: 144 ANWLVEPPGLFMGRGQHPMRGRWKPRVRPQDVTLNLGENA----PVPEGNWKEIVHDHSS 199
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKI-RENYQADWKSKE 230
TWLA+W EN+ G+ KY+ L+ S+ L+ E D KY+ A+KLA+ +++ RE + K +
Sbjct: 200 TWLATWIENLTGKRKYVWLHDSAALRQENDRAKYDKAKKLAEQESRVHREVIRRMMKGGD 259
Query: 231 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFL 290
+ A Y I KLA+R G+EKD D+ADTVG +LRVEHI+ + G+ ++ F+FL
Sbjct: 260 ----KTATVAYLILKLAMRVGDEKDPDEADTVGASTLRVEHIKFPQAGGGR-QMIEFNFL 314
Query: 291 GKDSIRYYNEVPVE----KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTA 346
GKDS+ + + V K +++NL+ F++ KK SD +FD +N+ +N L E+M GLTA
Sbjct: 315 GKDSVPWQKTLEVNSDDTKALYENLKKFMQGKKPSDPIFDGINSRKVNAFLQEIMPGLTA 374
Query: 347 KVFRTYNASITLQQQLNEL-MDPDFSEAEKILAYNRANRAVAVLCNHQRSV-PK--SHDK 402
KVFRT A+ +QQ+L++ +D + SEA+KI A +AN A+ CNH++ V PK + K
Sbjct: 375 KVFRTCIATRVVQQELSKAKVDKNSSEAQKIYAARKANLEAAIKCNHKKGVDPKNPAAKK 434
Query: 403 SMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDK 462
++ +E I+ K++ + A+ + A K + RLKE+L K+EVQ +
Sbjct: 435 ALEKFEESIAKKKEAI---------AQLKADIAAKKWKTELQEQRLKERLEKIEVQLKLQ 485
Query: 463 EENKTIALGTSKLNYLDPRISVTWL 487
+E + LGTS NY+DPR+ WL
Sbjct: 486 QETRDYNLGTSLRNYIDPRVMKAWL 510
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 5/106 (4%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKI-RENYQADWKS 541
S TWLA+W EN+ G+ KY+ L+ S+ L+ E D KY+ A+KLA+ +++ RE + K
Sbjct: 198 SSTWLATWIENLTGKRKYVWLHDSAALRQENDRAKYDKAKKLAEQESRVHREVIRRMMKG 257
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+ + A Y I KLA+R G+EKD D+ADTVG +LRVEHI+
Sbjct: 258 GD----KTATVAYLILKLAMRVGDEKDPDEADTVGASTLRVEHIKF 299
>gi|300521520|gb|ADK25971.1| topoisomerase IB [Candidatus Nitrososphaera gargensis]
Length = 558
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 191/505 (37%), Positives = 293/505 (58%), Gaps = 44/505 (8%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+++ L++D EE+ +A+ + Y F NFM D R + EK R + + DF
Sbjct: 37 GEKLALNRDQEELIYAWAKKKDTHYVQDPVFQENFMSDLRPLLPEKFRNIT--IKDIDFS 94
Query: 65 KMHAYFVQKSEER---------KAMSKEEKKKI----KDENEAITKEYGVCTIDGHKEKI 111
AY + E+R K ++KEEKKKI K E E + YG +DG + I
Sbjct: 95 A--AYRLADEEKRMKEQEKERYKTLAKEEKKKISLAKKAERERLKATYGKAVVDGVEVDI 152
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
N+ +EPPGLF GRG+HP G+ K RV+ +D+ +N +++ P P WKE+ HD+
Sbjct: 153 ANWLVEPPGLFMGRGQHPMRGRWKPRVRPQDVTLNLGENA----PVPEGNWKEIVHDHSS 208
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKI-RENYQADWKSKE 230
TWLA+W EN+ G+ KY+ L+ S+ L+ E D KY+ A+KLA+ +++ RE + K +
Sbjct: 209 TWLATWIENLTGKRKYVWLHDSAALRQENDRAKYDKAKKLAEQESRVHREVIRRMMKGGD 268
Query: 231 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFL 290
+ A Y I KLA+R G+EKD D+ADTVG +LRVEHI+ + G+ ++ F+FL
Sbjct: 269 ----KTATVAYLILKLAMRVGDEKDPDEADTVGASTLRVEHIKFPQAGGGR-QMIEFNFL 323
Query: 291 GKDSIRYYNEVPVE----KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTA 346
GKDS+ + + V K +++NL+ F++ KK SD +FD +N+ +N L E+M GLTA
Sbjct: 324 GKDSVPWQKTLEVNSDDTKALYENLKKFMQGKKPSDPIFDGINSRKVNAFLQEIMPGLTA 383
Query: 347 KVFRTYNASITLQQQLNEL-MDPDFSEAEKILAYNRANRAVAVLCNHQRSV-PK--SHDK 402
KVFRT A+ +QQ+L++ +D + SEA+KI A +AN A+ CNH++ V PK + K
Sbjct: 384 KVFRTCIATRVVQQELSKAKVDKNSSEAQKIYAARKANLEAAIKCNHKKGVDPKNPAAKK 443
Query: 403 SMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDK 462
++ +E I+ K++ + A+ + A K + RLKE+L K+EVQ +
Sbjct: 444 ALEKFEESIAKKKEAI---------AQLKADIAAKKWKTELQEQRLKERLEKIEVQLKLQ 494
Query: 463 EENKTIALGTSKLNYLDPRISVTWL 487
+E + LGTS NY+DPR+ WL
Sbjct: 495 QETRDYNLGTSLRNYIDPRVMKAWL 519
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 5/106 (4%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKI-RENYQADWKS 541
S TWLA+W EN+ G+ KY+ L+ S+ L+ E D KY+ A+KLA+ +++ RE + K
Sbjct: 207 SSTWLATWIENLTGKRKYVWLHDSAALRQENDRAKYDKAKKLAEQESRVHREVIRRMMKG 266
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+ + A Y I KLA+R G+EKD D+ADTVG +LRVEHI+
Sbjct: 267 GD----KTATVAYLILKLAMRVGDEKDPDEADTVGASTLRVEHIKF 308
>gi|119602666|gb|EAW82260.1| topoisomerase (DNA) I, mitochondrial, isoform CRA_b [Homo sapiens]
Length = 268
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 131/203 (64%), Positives = 167/203 (82%)
Query: 47 MTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDG 106
M +ER VI L KCDF ++H YFV K+ RK +S+EEK+K+K+E E + +E+G C +DG
Sbjct: 1 MAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQKLKEEAEKLQQEFGYCILDG 60
Query: 107 HKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVR 166
H+EKIGNF+IEPPGLFRGRG+HPKMG LKRR+ ED++INCS+DSK+P PP GH+WKEVR
Sbjct: 61 HQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDVVINCSRDSKIPEPPAGHQWKEVR 120
Query: 167 HDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADW 226
DN VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADW
Sbjct: 121 SDNTVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADW 180
Query: 227 KSKEMRIRQRAVALYFIDKLALR 249
KS+EM+ RQRAVALYFIDK+ ++
Sbjct: 181 KSREMKTRQRAVALYFIDKVGVQ 203
Score = 122 bits (307), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/80 (66%), Positives = 68/80 (85%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 124 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 183
Query: 543 EMRIRQRAVALYFIDKLALR 562
EM+ RQRAVALYFIDK+ ++
Sbjct: 184 EMKTRQRAVALYFIDKVGVQ 203
>gi|304273949|gb|ADM18412.1| topoisomerase I [Diochus sp. SC-2010]
Length = 241
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/214 (70%), Positives = 178/214 (83%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
K+G+ YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK +DDLFDRLNT+++NKHL
Sbjct: 2 KEGRDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPADDLFDRLNTAIMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL++L +PD S +EKIL+YNRANRAVA+LCNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLDKLTNPDESVSEKILSYNRANRAVAILCNHQRAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKK-----KTALGRLKEQL 452
K H KSM LKEKI KR+ DA+R + DAKK ++ +K+ K L ++ EQL
Sbjct: 122 KGHQKSMXKLKEKIXAKRESXHDAKRQVSDAKKDARHGSVKEKQIYEKKKKMLEKMXEQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KLE+QETD++ENKTIALGTSKLNYLDPRISV W
Sbjct: 182 NKLEIQETDRDENKTIALGTSKLNYLDPRISVAW 215
>gi|443893770|dbj|GAC71226.1| DNA topoisomerase I [Pseudozyma antarctica T-34]
Length = 1050
Score = 298 bits (764), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 177/474 (37%), Positives = 261/474 (55%), Gaps = 48/474 (10%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWR---KSMTEKERAVITDLSKC 61
G+ + L + EE+A FYA IE ++ FN NF D+ K ++ I K
Sbjct: 211 GEPVDLPPETEEVAMFYAVKIETQHAQNPIFNRNFFDDFTADLKKFPPRDGTQIKSFDKL 270
Query: 62 DFRKMHAYFVQ----KSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
DFR M+ Y+ ++E +KA++ +K+ + + + +C +DG ++++GN +E
Sbjct: 271 DFRDMYNYWRSLKDAENERKKALAPSARKREIEARKVEENTWKICLVDGVEQRVGNVNVE 330
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPG-HKWKEVRHDNQVTWLAS 176
PPGLF GRG HPK GK+KRR+ DI IN S + P PPPG W EV VTWLA
Sbjct: 331 PPGLFLGRGAHPKAGKVKRRIYPGDITINHSAEHPAPSPPPGLGDWGEVVEKKDVTWLAY 390
Query: 177 WTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQR 236
W EN+ GQ KY+ L+ +S K D +K+E ARKL + +IR + + KSK RQ
Sbjct: 391 WKENINGQYKYVFLDATSNFKTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKVRNERQI 450
Query: 237 AVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIR 296
A ++ ID +LRAGNEK ED+A+T G CSLR EH Q+ P + +FLGKDS++
Sbjct: 451 ATIVWLIDNFSLRAGNEKGEDEAETYGVCSLRCEHAQVK-----MPDTIHLEFLGKDSMK 505
Query: 297 YYNEVPVEKR-VFKNLQLFVEN------------KKGSDDLF-----------DRLNTSV 332
+ ++ + VFKN+ +F++ KK +D +F L S
Sbjct: 506 FEEDLKITNPDVFKNITMFLKTNGMKDKSGNYVRKKPNDPIFCAPGDSAAGKMQPLQPSA 565
Query: 333 LNKHLSELMEGLTAKVFRTYNASITLQ---QQLNELMDPDFSEAEK-------ILAYNRA 382
+N LS+ M+GL+AKVFRTYNAS+T Q +Q E + ++AE+ LAYN A
Sbjct: 566 VNTFLSKYMKGLSAKVFRTYNASVTFQGLLEQTEEWLRSRPNKAEREINQTNLRLAYNEA 625
Query: 383 NRAVAVLCNHQRSV-PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESK 435
NR VA+LCNHQ++V P ++++ +EKI R ++ ++ + K GE K
Sbjct: 626 NRQVAILCNHQKTVNPMLLNRNLERTQEKIFQIRYEIMKEQQKILTFHKIGELK 679
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 415 RKQVKDAERALKDAKKAGESKAMTDKKKTALGRLK----------EQLLKLEVQETDKEE 464
+KQV D +AL + K E + T+K + A + + K E + +K
Sbjct: 772 KKQVDDELKALSETAKRLEKERKTNKSQAASCNFASSAKKILSKHDMIRKQEAELVNKNN 831
Query: 465 NKTIALGTSKLNYLDPRISVTWLASWTENV 494
+AL TSKLNY+DPRI++ WL W + +
Sbjct: 832 ASDVALSTSKLNYIDPRITLAWLKEWDDRL 861
>gi|304273935|gb|ADM18405.1| topoisomerase I [Atanygnathus acuminatus]
Length = 241
Score = 298 bits (763), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 156/218 (71%), Positives = 179/218 (82%), Gaps = 5/218 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KD K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQ+F+ENK DDLFDRLNTSV+NKHL
Sbjct: 2 KDDKDYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQIFMENKSSGDDLFDRLNTSVMNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL +L + D + EKIL+YNRANRAVA+LCNHQ +VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLAQLTNMDDNVQEKILSYNRANRAVAILCNHQXAVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQL 452
K+H KSM NLKEKI ++ +KDAER +KDA K + + K + +KKK L RLK+QL
Sbjct: 122 KTHQKSMENLKEKIKXXKEAIKDAERQVKDAHKDAKRGSVKEKILYEKKKKMLERLKDQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
KLE+QETDK+ENKTIALGTSKLNYLDPRISV W +
Sbjct: 182 NKLEIQETDKDENKTIALGTSKLNYLDPRISVAWCKKY 219
>gi|381143589|gb|AFF58455.1| topoisomerase I, partial [Asaphidion cf. griseum DRM-2012]
Length = 213
Score = 298 bits (763), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 155/211 (73%), Positives = 178/211 (84%), Gaps = 5/211 (2%)
Query: 281 KPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSEL 340
K YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+EL
Sbjct: 1 KEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTQIMNKHLNEL 60
Query: 341 MEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSH 400
MEGLTAKVFRTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPKSH
Sbjct: 61 MEGLTAKVFRTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSH 120
Query: 401 DKSMGNLKEKISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKL 455
KSM LKEKI KR+Q+ DA++ +KDA++ + + K + DKKK L +LKEQL+KL
Sbjct: 121 AKSMEKLKEKIDQKREQITDAQKQVKDAQRDAKHGSVKEKVVYDKKKKMLEKLKEQLMKL 180
Query: 456 EVQETDKEENKTIALGTSKLNYLDPRISVTW 486
EV ETD++ENK IALGTSKLNYLDPRISV W
Sbjct: 181 EVMETDRDENKAIALGTSKLNYLDPRISVAW 211
>gi|71022035|ref|XP_761248.1| DNA topoisomerase I [Ustilago maydis 521]
gi|119370536|sp|P41511.2|TOP1_USTMA RecName: Full=DNA topoisomerase 1; AltName: Full=DNA topoisomerase
I
gi|46097742|gb|EAK82975.1| TOP1_USTMA DNA topoisomerase I [Ustilago maydis 521]
Length = 1019
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 174/456 (38%), Positives = 256/456 (56%), Gaps = 47/456 (10%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWR---KSMTEKERAVITDLSKC 61
G+ + L EEIA FYA +E ++ FN NF D++ K ++ I K
Sbjct: 190 GRPVDLPWQTEEIAMFYAVKLETQHAQNAIFNRNFFDDFKTDLKKYPPRDGTQIKSFDKL 249
Query: 62 DFRKMHAYFVQ----KSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
DFR M+ Y+ + E +KA++ +K+ +E +A ++ +C +DG ++++GN +E
Sbjct: 250 DFRDMYNYWRSLKDAELERKKALAPSARKREIEERKAEETKWKICLVDGVEQRVGNVNVE 309
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPG-HKWKEVRHDNQVTWLAS 176
PPGLF GRG HPK GK+KRR+ DI IN S D P PP G W EV VTWLA
Sbjct: 310 PPGLFLGRGAHPKAGKVKRRISPGDITINHSADHPAPQPPAGMGDWAEVVEKKDVTWLAY 369
Query: 177 WTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQR 236
W EN+ GQ KY+ L+ +S K D +K+E ARKL + +IR + + KSK RQ
Sbjct: 370 WKENINGQYKYVFLDATSNFKTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKVRHERQI 429
Query: 237 AVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIR 296
A ++ ID +LRAGNEK ED+A+T G CSLR EH Q+ P + +FLGKDS++
Sbjct: 430 ATIVWLIDNFSLRAGNEKGEDEAETYGVCSLRCEHAQIK-----MPDTIHLEFLGKDSMK 484
Query: 297 YYNEVPV-EKRVFKNLQLFVEN------------KKGSDDLF----------DRLNTSVL 333
+ ++ + VFKN+ +F+++ KK SD +F L + +
Sbjct: 485 FEEDLKITNPDVFKNIAMFLKSNGMKDKSGNYVRKKPSDPIFCAPESGSGKMQPLQPNSV 544
Query: 334 NKHLSELMEGLTAKVFRTYNASITLQQQLNELMD-----PDFSEAE-----KILAYNRAN 383
N+ LS+ M+GL+AKVFRTYNAS+T Q L + + P+ +E E LAYN AN
Sbjct: 545 NQFLSKYMKGLSAKVFRTYNASVTFQGLLEQTEEWLKSRPNAAEREINQTNLRLAYNEAN 604
Query: 384 RAVAVLCNHQRSV-PKSHDKSMGNLKEKISNKRKQV 418
R VA+LCNHQ++V P ++++ ++KI R ++
Sbjct: 605 RQVAILCNHQKTVNPMLLNRNLERTQDKIFQIRYEI 640
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 67/104 (64%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ GQ KY+ L+ +S K D +K+E ARKL + +IR + + KSK
Sbjct: 364 VTWLAYWKENINGQYKYVFLDATSNFKTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKV 423
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ A ++ ID +LRAGNEK ED+A+T G CSLR EH Q+
Sbjct: 424 RHERQIATIVWLIDNFSLRAGNEKGEDEAETYGVCSLRCEHAQI 467
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 450 EQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENV 494
E + K E + +K +AL TSKLNY+DPRI++ WL W + +
Sbjct: 795 EMIKKQEAELVNKNNTSDVALSTSKLNYIDPRITLAWLKEWDDRL 839
>gi|357467017|ref|XP_003603793.1| DNA topoisomerase I [Medicago truncatula]
gi|355492841|gb|AES74044.1| DNA topoisomerase I [Medicago truncatula]
Length = 1009
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 178/388 (45%), Positives = 231/388 (59%), Gaps = 40/388 (10%)
Query: 110 KIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHD 168
K+GNFR+EPPGLF GRGEHPK+GK+KRR+ D+ IN K + +P P PG WKE++H
Sbjct: 618 KVGNFRVEPPGLFIGRGEHPKIGKVKRRIHPSDVSINIGKYAPIPECPIPGESWKEIKHK 677
Query: 169 NQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 228
+ WLA S LKG+ D +KYE AR L I IR Y + S
Sbjct: 678 DTRIWLAK----------------CSSLKGQSDKEKYEKARMLNSYIGNIRAAYTKGFTS 721
Query: 229 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFD 288
K++ +Q AVA YFIDKLALRAGNEKD+++ADTVGCC+L+VE++ K FD
Sbjct: 722 KDITKQQIAVATYFIDKLALRAGNEKDDEEADTVGCCTLKVENVTAQGHNKLK-----FD 776
Query: 289 FLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKV 348
FLGKDSI+Y V VE V+ + F +K S L ++N +N HL ELM LTAKV
Sbjct: 777 FLGKDSIKYEYTVEVELPVYNAILKF---QKVSAFLSYQIN---VNAHLKELMPNLTAKV 830
Query: 349 FRTYNASITLQQQLN-ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNL 407
FRT+NAS TL LN E D D AEK Y AN+ A++CNHQRSV K+H + L
Sbjct: 831 FRTFNASFTLDDMLNKETKDGDV--AEKRDVYQHANKQGAIICNHQRSVSKNHSAQISKL 888
Query: 408 KEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALG------RLKEQLLKLEVQETD 461
EKI + +++ + LK A+K +D KK L ++ + K+E + D
Sbjct: 889 NEKIVELQAFLRELKIDLKKARKEKSPLTSSDGKKRNLNPEAIEKKITQTSAKIEKMQRD 948
Query: 462 ---KEENKTIALGTSKLNYLDPRISVTW 486
KE+ KT+ALGTSK+NYLDPRI+V W
Sbjct: 949 MHTKEDLKTVALGTSKINYLDPRITVAW 976
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 67/97 (69%), Gaps = 1/97 (1%)
Query: 489 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 548
SW E ++ + I L S LKG+ D +KYE AR L I IR Y + SK++ +Q
Sbjct: 670 SWKE-IKHKDTRIWLAKCSSLKGQSDKEKYEKARMLNSYIGNIRAAYTKGFTSKDITKQQ 728
Query: 549 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
AVA YFIDKLALRAGNEKD+++ADTVGCC+L+VE++
Sbjct: 729 IAVATYFIDKLALRAGNEKDDEEADTVGCCTLKVENV 765
>gi|381143617|gb|AFF58469.1| topoisomerase I, partial [Bembidion anchonoderum]
Length = 202
Score = 297 bits (761), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 149/201 (74%), Positives = 170/201 (84%), Gaps = 5/201 (2%)
Query: 291 GKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
GKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFR
Sbjct: 1 GKDSIRYYNEVPVEKRVFKNLQLFMENKSPGDDLFDRLNTQIMNKHLNELMEGLTAKVFR 60
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPKSH KSM LKEK
Sbjct: 61 TYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKSHAKSMEKLKEK 120
Query: 411 ISNKRKQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEEN 465
I KR+Q+ DA++ LKDA++ + + K + DKKK L RLKEQL+KLEVQETD++EN
Sbjct: 121 IEQKREQITDAQKQLKDAQRDAKHGSVKEKVVYDKKKKMLERLKEQLIKLEVQETDRDEN 180
Query: 466 KTIALGTSKLNYLDPRISVTW 486
K IALGTSKLNYLDP ISV W
Sbjct: 181 KAIALGTSKLNYLDPXISVAW 201
>gi|343428751|emb|CBQ72296.1| DNA topoisomerase I [Sporisorium reilianum SRZ2]
Length = 1033
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 182/500 (36%), Positives = 273/500 (54%), Gaps = 47/500 (9%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWR---KSMTEKERAVITDLSKC 61
GK + L EE+A FYA +E ++ FN NF D++ K ++ I K
Sbjct: 202 GKPVDLPPQTEEVAMFYAVKLETQHAQNAIFNRNFFDDFKADLKKYPPRDGTQIKSFDKL 261
Query: 62 DFRKMHAYFVQ----KSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
DFR M+ Y+ + E +K+++ +K+ +E + ++ VC +DG ++++GN +E
Sbjct: 262 DFRDMYNYWRSLKDAELERKKSLAPSARKREIEERKVEETKWKVCLVDGIEQRVGNVNVE 321
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPG-HKWKEVRHDNQVTWLAS 176
PPGLF GRG HPK+GK+KRR+ DI IN S P PP G W EV VTWLA
Sbjct: 322 PPGLFLGRGAHPKVGKVKRRIFPGDITINHSAKHPAPQPPAGMGDWVEVVEKKDVTWLAY 381
Query: 177 WTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQR 236
W EN+ GQ KY+ L+ +S K D +K+E ARKL + +IR + + KSK RQ
Sbjct: 382 WKENINGQYKYVFLDATSNFKTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKVRHERQI 441
Query: 237 AVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIR 296
A ++ ID +LRAGNEK ED+A+T G CSLR EH Q+ P + +FLGKDS++
Sbjct: 442 ATIVWLIDNFSLRAGNEKGEDEAETYGVCSLRCEHAQIK-----MPDTIHLEFLGKDSMK 496
Query: 297 YYNEVPVEKR-VFKNLQLFVEN------------KKGSDDLF----------DRLNTSVL 333
+ ++ + VFKN+ +F++ KK SD +F L S +
Sbjct: 497 FEEDLKITNPDVFKNIAMFLKTNGMKDKSGNFVRKKPSDPIFCAPESGSGKMQPLQPSSV 556
Query: 334 NKHLSELMEGLTAKVFRTYNASITLQ---QQLNELMDPDFSEAEK-------ILAYNRAN 383
N+ LS+ M+GL+AKVFRTYNAS+T Q +Q E + AE+ LAYN AN
Sbjct: 557 NQFLSKYMKGLSAKVFRTYNASVTFQGLLEQTEEWLKSRPKAAEREINQTNLRLAYNEAN 616
Query: 384 RAVAVLCNHQRSV-PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKK 442
R VA+LCNHQ++V P ++++ +EKI R ++ ++ + K GE K K+
Sbjct: 617 RQVAILCNHQKTVNPMLLNRNLERTQEKIFQIRYEIMKEQQKILTFHKLGELKKEFKPKE 676
Query: 443 TALGRLKEQLLKLEVQETDK 462
A + +++++ + + DK
Sbjct: 677 FAFMKQFDKIMQKQDLDADK 696
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 67/104 (64%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ GQ KY+ L+ +S K D +K+E ARKL + +IR + + KSK
Sbjct: 376 VTWLAYWKENINGQYKYVFLDATSNFKTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKV 435
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ A ++ ID +LRAGNEK ED+A+T G CSLR EH Q+
Sbjct: 436 RHERQIATIVWLIDNFSLRAGNEKGEDEAETYGVCSLRCEHAQI 479
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 450 EQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENV 494
E + K E + +K +AL TSKLNY+DPRI++ WL W + +
Sbjct: 807 EMIRKQEAELVNKNNTSDVALSTSKLNYIDPRITLAWLKEWDDRL 851
>gi|430732231|gb|AGA55516.1| topoisomerase, partial [Carabus concolor]
Length = 205
Score = 295 bits (754), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 147/202 (72%), Positives = 168/202 (83%), Gaps = 5/202 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER +KDA++ + K + DKKK AL RLKEQL++L VQETDK+E
Sbjct: 121 KIEQKKDSILEMERQVKDAQRQAKHGSVKEKVVYDKKKKALDRLKEQLVRLNVQETDKDE 180
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
NK+IALGTSKLNYLDPRISV W
Sbjct: 181 NKSIALGTSKLNYLDPRISVAW 202
>gi|430732233|gb|AGA55517.1| topoisomerase, partial [Carabus fairmairei]
Length = 205
Score = 294 bits (753), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 147/202 (72%), Positives = 167/202 (82%), Gaps = 5/202 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TLQQQL+EL D D + EKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLQQQLDELTDADDTVPEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER +KDA++ + K + DKKK AL RLKEQL++L VQETDK+E
Sbjct: 121 KIEQKKDSILEMERQVKDAQRQAKHGSVKEKVVYDKKKKALDRLKEQLVRLNVQETDKDE 180
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
NK+IALGTSKLNYLDPRISV W
Sbjct: 181 NKSIALGTSKLNYLDPRISVAW 202
>gi|430732229|gb|AGA55515.1| topoisomerase, partial [Carabus irregularis]
Length = 205
Score = 294 bits (753), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 146/202 (72%), Positives = 168/202 (83%), Gaps = 5/202 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TLQQQL+EL D S AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLQQQLDELTSADDSVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER ++DA++ + K + DKK+ AL +LK+QL+KLEVQETDK+E
Sbjct: 121 KIEQKKDSISEMERQVQDAQRQAKRGSVKEKVVYDKKRKALDKLKDQLVKLEVQETDKDE 180
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
NK+IALGTSKLNYLDPRISV W
Sbjct: 181 NKSIALGTSKLNYLDPRISVAW 202
>gi|474909|gb|AAC37415.1| topoisomerase I [Ustilago maydis]
Length = 1019
Score = 294 bits (753), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 169/433 (39%), Positives = 242/433 (55%), Gaps = 46/433 (10%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWR---KSMTEKERAVITDLSKC 61
G+ + L EEIA FYA +E ++ FN NF D++ K ++ I K
Sbjct: 190 GRPVDLPCQTEEIAMFYAVKLETQHAQNAIFNRNFFDDFKTDLKKYPPRDGTQIKSFDKL 249
Query: 62 DFRKMHAYFVQ----KSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
DFR M+ Y+ + E +KA++ +K+ +E +A ++ +C +DG ++++GN +E
Sbjct: 250 DFRDMYNYWRSLKDAELERKKALAPSARKREIEERKAEETKWKICLVDGVEQRVGNVNVE 309
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPG-HKWKEVRHDNQVTWLAS 176
PPGLF GRG HPK GK+KRR+ DI IN S D P PP G W EV VTWLA
Sbjct: 310 PPGLFLGRGAHPKAGKVKRRISPGDITINHSGDHPAPQPPAGMGDWAEVVEKKDVTWLAY 369
Query: 177 WTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQR 236
W EN+ GQ KY+ L+ +S K D +K+E ARKL + +IR + + KSK RQ
Sbjct: 370 WKENINGQYKYVFLDATSNFKTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKVRHERQI 429
Query: 237 AVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIR 296
A + ID +LRAGNEK ED+ +T G CSLR EH Q+ P + +FLGKDS++
Sbjct: 430 ATIVCLIDNFSLRAGNEKGEDETETYGVCSLRCEHAQIK-----MPDTIHLEFLGKDSMK 484
Query: 297 YYNEVPVEKR-VFKNLQLFVEN------------KKGSDDLF----------DRLNTSVL 333
+ ++ + VFKN+ +F+++ KK SD +F L + +
Sbjct: 485 FEEDLKITNPDVFKNIAMFLKSNGMKDKSGNYVRKKPSDPIFCAPESGSGKMQPLQPNSV 544
Query: 334 NKHLSELMEGLTAKVFRTYNASITLQQQLNELMD-----PDFSEAE-----KILAYNRAN 383
N+ LS+ M+GL+AKVFRTYNAS+T Q L + + P+ +E E LAYN AN
Sbjct: 545 NQFLSKYMKGLSAKVFRTYNASVTFQGLLEQTEEWLKSRPNAAEREINQTNLRLAYNEAN 604
Query: 384 RAVAVLCNHQRSV 396
R VA+LCNHQ++V
Sbjct: 605 RQVAILCNHQKTV 617
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 65/104 (62%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ GQ KY+ L+ +S K D +K+E ARKL + +IR + + KSK
Sbjct: 364 VTWLAYWKENINGQYKYVFLDATSNFKTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKV 423
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ A + ID +LRAGNEK ED+ +T G CSLR EH Q+
Sbjct: 424 RHERQIATIVCLIDNFSLRAGNEKGEDETETYGVCSLRCEHAQI 467
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 450 EQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENV 494
E + K E + +K +AL TSKLNY+DPRI++ WL W + +
Sbjct: 795 EMIKKQEAELVNKNNTSDVALSTSKLNYIDPRITLAWLKEWDDRL 839
>gi|430732221|gb|AGA55511.1| topoisomerase, partial [Carabus deyrollei]
Length = 205
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 147/202 (72%), Positives = 167/202 (82%), Gaps = 5/202 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TLQQQL+EL + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLQQQLDELTTEGDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER +KDA++A + K + DKKK AL RLK+QL+KL VQETDK+E
Sbjct: 121 KIEQKKDAIHEMERQVKDAQRAAKHGSVKEKVVYDKKKKALDRLKDQLVKLNVQETDKDE 180
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
NK+IALGTSKLNYLDPRISV W
Sbjct: 181 NKSIALGTSKLNYLDPRISVAW 202
>gi|71030242|ref|XP_764763.1| DNA topoisomerase I [Theileria parva strain Muguga]
gi|68351719|gb|EAN32480.1| DNA topoisomerase I, putative [Theileria parva]
Length = 1003
Score = 291 bits (745), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 159/375 (42%), Positives = 230/375 (61%), Gaps = 20/375 (5%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKE------RAV 54
++ G+ + L EEIAT +A+ I Y T + + NF W+ +++ E R
Sbjct: 358 IKVKGETIHLPPHLEEIATMWAQSIGTNYETSDIYCKNF---WQVFVSKFEKDHFIRRCK 414
Query: 55 ITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNF 114
+TD+ DF + + ++ +++K +KE K + E+ + +D +EK+ +
Sbjct: 415 LTDV---DFSLIKTH-LEDEKQKKKDNKEFYKAKQQEDAKREYRFNYALVDWVREKVSSN 470
Query: 115 RIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP----PGHKWKEVRHDNQ 170
++EPPGLF+GRG HPK G LK R+ +D+I+N SKD+ VP GH WK++ HDN
Sbjct: 471 KLEPPGLFKGRGLHPKQGLLKARMFPKDVILNLSKDAPVPKVSNFQREGHSWKDIYHDNS 530
Query: 171 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 230
VTWLA + +++ Q KY+ L+ SK KG D+ KY AR+L I KIR++Y S +
Sbjct: 531 VTWLAYYKDSINDQFKYMYLSAQSKFKGFHDFLKYNKARELKAYIQKIRDDYNTKMLSMD 590
Query: 231 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFL 290
+ +Q A+Y ID LALR G EKD D+ADTVGCCSLRVEHI+ E+K + DFL
Sbjct: 591 IYEKQLGTAVYLIDFLALRVGGEKDADEADTVGCCSLRVEHIKFSEKKQN---TITLDFL 647
Query: 291 GKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
GKDSIRY+N V + + NL F KK S+++F+++NT+ LN++L ELM+GL+AKVFR
Sbjct: 648 GKDSIRYFNTVTLNDVAYDNLAKFCHRKKASEEIFNKINTNKLNEYLRELMDGLSAKVFR 707
Query: 351 TYNASITLQQQLNEL 365
TYNASITLQ Q L
Sbjct: 708 TYNASITLQNQFKRL 722
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 73/109 (66%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SVTWLA + +++ Q KY+ L+ SK KG D+ KY AR+L I KIR++Y S
Sbjct: 530 SVTWLAYYKDSINDQFKYMYLSAQSKFKGFHDFLKYNKARELKAYIQKIRDDYNTKMLSM 589
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEK 591
++ +Q A+Y ID LALR G EKD D+ADTVGCCSLRVEHI+ E+K
Sbjct: 590 DIYEKQLGTAVYLIDFLALRVGGEKDADEADTVGCCSLRVEHIKFSEKK 638
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 72/147 (48%), Gaps = 36/147 (24%)
Query: 373 AEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGN-------LKEKI-----------SNK 414
+E + YN ANR VA+LCNHQRS+PK H+ SM LKE I SN
Sbjct: 828 SELLQFYNYANREVAILCNHQRSIPKQHETSMTKLKLQAKMLKEDIQELNEYCKHLQSNS 887
Query: 415 RKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLE---------------VQE 459
+ + K E KD G + + K L K +L L ++
Sbjct: 888 KGEFK-FESKTKDVN--GNPRKLITKPGMKLEAAKNKLSTLNYLCFAPLKKKQKDHAIKM 944
Query: 460 TDKEENKTIALGTSKLNYLDPRISVTW 486
T K+ NKT+ALGTSK+NY+DPRI+V +
Sbjct: 945 TIKDSNKTVALGTSKINYMDPRITVAF 971
>gi|388856767|emb|CCF49554.1| probable DNA topoisomerase I [Ustilago hordei]
Length = 1037
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 173/474 (36%), Positives = 261/474 (55%), Gaps = 48/474 (10%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWR---KSMTEKERAVITDLSKC 61
GK + L + EE+A FYA +E ++ FN NF D++ K ++ I K
Sbjct: 207 GKPVDLPPETEEVAMFYAVKLETQHAQNAIFNRNFFDDFKADLKKYPPRDGTQIKSFDKI 266
Query: 62 DFRKMHAYFVQ----KSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
DFR M+ ++ ++E +K ++ +K+ +E + ++ VC +DG ++++GN +E
Sbjct: 267 DFRDMYNHWKALRDAETERKKNLAPSARKREIEERKLEDNKWKVCLVDGVEQRVGNVNVE 326
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPG-HKWKEVRHDNQVTWLAS 176
PPGLF GRG HPK GK+KRR+ DI IN S D P PP G W EV VTWLA
Sbjct: 327 PPGLFLGRGAHPKAGKVKRRIFPGDITINHSADHAAPQPPAGMGHWAEVVEKKDVTWLAY 386
Query: 177 WTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQR 236
W EN+ Q KY+ L+ +S K D +K+E ARKL + +IR + + KSK RQ
Sbjct: 387 WKENINSQYKYVFLDATSNFKTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKVRHERQI 446
Query: 237 AVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIR 296
A ++ ID +LRAGNEK ED+A+T G CSLR EH Q+ P + +FLGKDS++
Sbjct: 447 ATIVWLIDNFSLRAGNEKGEDEAETYGVCSLRCEHAQIK-----MPDTIHLEFLGKDSMK 501
Query: 297 YYNEVPV-EKRVFKNLQLFVEN------------KKGSDDLF-----------DRLNTSV 332
+ ++ + VFKN+ +F+++ KK SD +F L +
Sbjct: 502 FEEDLKITNPDVFKNMAMFLKSNGIKDQSGNFIRKKPSDPIFCAPFDSANGKMQPLQPNS 561
Query: 333 LNKHLSELMEGLTAKVFRTYNASITLQ---QQLNELMDPDFSEAEK-------ILAYNRA 382
+N+ L++ M+GL+AKVFRTYNAS+T Q +Q E + + AE+ LAYN A
Sbjct: 562 VNQFLAKYMKGLSAKVFRTYNASVTFQGLLEQTEEWIKSRPTAAEREINPTNLRLAYNEA 621
Query: 383 NRAVAVLCNHQRSV-PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESK 435
NR VA+LCNHQ++ P ++++ ++KI R ++ ++ + K GE K
Sbjct: 622 NRQVAILCNHQKTANPMLLNRNLERTQDKIFQIRYEILKEQQKILTLHKIGELK 675
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/104 (48%), Positives = 66/104 (63%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ Q KY+ L+ +S K D +K+E ARKL + +IR + + KSK
Sbjct: 381 VTWLAYWKENINSQYKYVFLDATSNFKTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKV 440
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ A ++ ID +LRAGNEK ED+A+T G CSLR EH Q+
Sbjct: 441 RHERQIATIVWLIDNFSLRAGNEKGEDEAETYGVCSLRCEHAQI 484
Score = 45.8 bits (107), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 408 KEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRL---KEQLLKLEVQETDKEE 464
K+++ + K + + + L+ +K +S+A + T+ ++ E + K E + +K
Sbjct: 767 KKQVDEELKALNETAKRLEKERKTNKSQATSCNFATSAKKILSKYEMIKKQEAELVNKNN 826
Query: 465 NKTIALGTSKLNYLDPRISVTWLASW 490
+AL TSKLNY+DPRI++ WL W
Sbjct: 827 TSDVALSTSKLNYIDPRITLAWLKEW 852
>gi|68071095|ref|XP_677461.1| topoisomerase I [Plasmodium berghei strain ANKA]
gi|56497590|emb|CAH96938.1| topoisomerase I, putative [Plasmodium berghei]
Length = 805
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 168/402 (41%), Positives = 235/402 (58%), Gaps = 46/402 (11%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV------------I 55
++L+ AEE+AT++ +I +Y TKE F NF K + ++ EK+ + I
Sbjct: 181 IELNPKAEELATYWCSVIGTDYCTKEKFILNFFKTFINNL-EKDNIIRRENEHKLKNGDI 239
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
++ DF + ++ EER +KEEK++ K Y +D +EKI + +
Sbjct: 240 SNFKFIDFMTIKENLIKLREERLNKTKEEKEEEKKIRMEKELPYTFALVDWIREKISSNK 299
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVP---PPPPGHKWKEVRHDNQVT 172
EPPGLFRGRGEHPK G LK+R+ ED++IN SKD+ P GH W ++ HDN+VT
Sbjct: 300 AEPPGLFRGRGEHPKQGLLKKRIFPEDVVINISKDAPAPRLYDDMCGHNWGDIYHDNKVT 359
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA + +++ Q+KY L+ SK KG KD+ KYE ARKL ++KIR++YQ KSK +
Sbjct: 360 WLAYYKDSINDQIKYTFLSAQSKFKGYKDFLKYENARKLKSCVHKIRKDYQNKMKSKNII 419
Query: 233 IRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHI------------------- 272
+Q A+Y ID LALR G EKD D +ADTVGCCSLRVEH+
Sbjct: 420 NKQLGTAVYLIDFLALRVGGEKDIDEEADTVGCCSLRVEHVSFSHNVIIKNENTNDENDN 479
Query: 273 ---------QLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDD 323
L + + YV DFLGKDSIRY+N V ++K+ + N+ +F +NK +
Sbjct: 480 KISKIPLPKNLEDILEDDCYVT-LDFLGKDSIRYFNTVKIDKQAYINMIIFCKNKNKDEG 538
Query: 324 LFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNEL 365
+FD++ S LN++L E+M L+AKVFRTYNASITL QQL L
Sbjct: 539 VFDQITCSKLNEYLKEIMPTLSAKVFRTYNASITLDQQLRRL 580
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 73/105 (69%), Gaps = 1/105 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA + +++ Q+KY L+ SK KG KD+ KYE ARKL ++KIR++YQ KSK
Sbjct: 358 VTWLAYYKDSINDQIKYTFLSAQSKFKGYKDFLKYENARKLKSCVHKIRKDYQNKMKSKN 417
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQL 587
+ +Q A+Y ID LALR G EKD D +ADTVGCCSLRVEH+
Sbjct: 418 IINKQLGTAVYLIDFLALRVGGEKDIDEEADTVGCCSLRVEHVSF 462
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 81/152 (53%), Gaps = 24/152 (15%)
Query: 363 NELMDPDFSEAEKILAY-NRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
N ++ D S ++ + N ANR VA+LCNHQRS+PK HD +M +K++I + +++
Sbjct: 652 NSPIEVDVSNVNDLINFFNNANREVAILCNHQRSIPKQHDTTMSKIKKQIEIYNEDMQEY 711
Query: 422 ERALKDAKKAGESKAMT--DKKKTALGRLKEQLLK---------------------LEVQ 458
++ L+ KK K T K T G L+ +K LE Q
Sbjct: 712 KKYLQYLKKNNNEKEFTFVSKVVTLDGSLRPNKVKENMKEESCKKKLIALIKKVELLENQ 771
Query: 459 ETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
+++NKTIALGTSK+NY+DPRI+V + +
Sbjct: 772 MKVRDDNKTIALGTSKINYMDPRITVAFCKQF 803
>gi|82594992|ref|XP_725660.1| eukaryotic DNA topoisomerase I [Plasmodium yoelii yoelii 17XNL]
gi|23480748|gb|EAA17225.1| Eukaryotic DNA topoisomerase I, DNA binding, putative [Plasmodium
yoelii yoelii]
Length = 886
Score = 288 bits (736), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 165/402 (41%), Positives = 236/402 (58%), Gaps = 46/402 (11%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV------------I 55
++L+ AEE+AT++ +I +Y TK+ F NF K + ++ EK+ + I
Sbjct: 236 IELNPKAEELATYWCSVIGTDYCTKDKFILNFFKTFINNL-EKDNIIRRENENKIKNGDI 294
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
++ DF + + ++ EER +KEEK++ K Y +D +EKI + +
Sbjct: 295 SNFKFIDFMTIKEHLIKLREERLNKTKEEKEEEKKIRMEKELPYTFALVDWIREKISSNK 354
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVP---PPPPGHKWKEVRHDNQVT 172
EPPGLFRGRGEHPK G LK+R+ ED++IN SKD+ P GH W ++ HDN+VT
Sbjct: 355 AEPPGLFRGRGEHPKQGLLKKRIFPEDVVINISKDAPAPRLYDDMCGHNWGDIYHDNKVT 414
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA + +++ Q+KY L+ SK KG KD+ KYE ARKL ++KIR++YQ K+K +
Sbjct: 415 WLAYYKDSINDQIKYTFLSAQSKFKGYKDFLKYENARKLKSCVHKIRKDYQNKMKNKNIV 474
Query: 233 IRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHI------------------- 272
+Q A+Y ID LALR G EKD D +ADTVGCCSLRVEH+
Sbjct: 475 NKQLGTAVYLIDFLALRVGGEKDIDEEADTVGCCSLRVEHVSFSHNVIIKNENTNDENDN 534
Query: 273 ---------QLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDD 323
L + + Y+ DFLGKDSIRY+N V ++K+ + N+ +F +NK +
Sbjct: 535 KISKIPLPKNLEDILEDDCYIT-LDFLGKDSIRYFNTVKIDKQAYINMIIFCKNKNKDEG 593
Query: 324 LFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNEL 365
+FD++ S LN++L E+M L+AKVFRTYNASITL QQL L
Sbjct: 594 VFDQITCSKLNEYLKEIMPTLSAKVFRTYNASITLDQQLRRL 635
>gi|304273961|gb|ADM18418.1| topoisomerase I [Holisus sp. SC-2010]
Length = 231
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/214 (66%), Positives = 173/214 (80%), Gaps = 5/214 (2%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KDGK +VV FDFLGKDSI Y NEV VEKRVFKNL+LF+ENK DD+FDR NT+VLNKHL
Sbjct: 2 KDGKEHVVVFDFLGKDSIXYXNEVQVEKRVFKNLKLFLENKSPGDDVFDRFNTTVLNKHL 61
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL +L + D + AEK+L+YNRANRAVA+ CNHQR+VP
Sbjct: 62 NELMEGLTAKVFRTYNASFTLQQQLEKLTNADDTVAEKMLSYNRANRAVALXCNHQRTVP 121
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGES-----KAMTDKKKTALGRLKEQL 452
KSH KSM LKEKI++K++ + DA+ A+ DA++ +S + + +KKK L RL +QL
Sbjct: 122 KSHQKSMEALKEKIASKKEAIADAKLAVNDAQRDAKSGSVKEQVVYEKKKKMLQRLHDQL 181
Query: 453 LKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
KLE+QETD++ENK IALGTSKLNYLDPRI W
Sbjct: 182 NKLEIQETDRDENKAIALGTSKLNYLDPRIXXAW 215
>gi|164660612|ref|XP_001731429.1| hypothetical protein MGL_1612 [Malassezia globosa CBS 7966]
gi|159105329|gb|EDP44215.1| hypothetical protein MGL_1612 [Malassezia globosa CBS 7966]
Length = 877
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 172/441 (39%), Positives = 246/441 (55%), Gaps = 39/441 (8%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKD---WRKSMTEKERAVITDLSKC 61
G + L ++EE+A FYA +E ++ + FN NF +D + K K+ I K
Sbjct: 149 GHPVPLPPESEEVAMFYAVKLESQHASNPIFNRNFFEDFCGYLKQYPPKDGTKIQKFEKL 208
Query: 62 DFRKMHAYF----VQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
DFR M+ Y+ V ++E +K+M+ +K AI EY +C +DG ++K GN +E
Sbjct: 209 DFRDMYNYWMSLKVAEAERKKSMAPSMRKAELAARRAIDNEYKLCLVDGIEQKAGNVTVE 268
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLF GRG HPK G++K R+Q E I IN S D P PP GH W EV VTWLA W
Sbjct: 269 PPGLFLGRGAHPKAGRVKTRIQPEQITINHSADHPPPKPPKGHSWGEVVERKDVTWLALW 328
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRA 237
EN+ G KY+ L+ SS K E D +K+E AR+L + ++R + + +SK+ + A
Sbjct: 329 RENINGGFKYVFLDASSTFKTESDREKFEKARRLDTCVKQVRADVLKNLRSKDRLDQMIA 388
Query: 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY 297
++ ID +LRAGNEK ED+A+T G CSLR H L P + FLGKDS+++
Sbjct: 389 TIVWLIDNFSLRAGNEKGEDEAETYGVCSLRCGHATLIP-----PNQLNLSFLGKDSMKF 443
Query: 298 YNEVPV-EKRVFKNLQLFVEN----KKGSDD-LF----------DRLNTSVLNKHLSELM 341
+ + V+KN+ F+++ KKG DD +F L V+N+ L M
Sbjct: 444 EETLTITNPHVYKNITSFLKSDGHQKKGPDDPIFAAPKARGDKMTPLPPDVVNQFLGRYM 503
Query: 342 EGLTAKVFRTYNASITLQQQLNEL----------MDPDFSEAEKILAYNRANRAVAVLCN 391
+GL+AKVFRTYNAS T Q L+E + + + A +AYN ANR VA+LCN
Sbjct: 504 KGLSAKVFRTYNASATFQGLLDETEEWLASRPTPQEREITPANLRIAYNEANRQVAILCN 563
Query: 392 HQRSVPK-SHDKSMGNLKEKI 411
HQ++V + +KS+ K+KI
Sbjct: 564 HQKTVNHVTLNKSLDRTKDKI 584
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 66/107 (61%)
Query: 481 RISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWK 540
R VTWLA W EN+ G KY+ L+ SS K E D +K+E AR+L + ++R + + +
Sbjct: 319 RKDVTWLALWRENINGGFKYVFLDASSTFKTESDREKFEKARRLDTCVKQVRADVLKNLR 378
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
SK+ + A ++ ID +LRAGNEK ED+A+T G CSLR H L
Sbjct: 379 SKDRLDQMIATIVWLIDNFSLRAGNEKGEDEAETYGVCSLRCGHATL 425
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 450 EQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQ 495
E + K E + +K ++LGTSK+NY+DPRI+V WL W +Q
Sbjct: 741 EAIKKQEAELLNKNNTSDVSLGTSKMNYIDPRITVAWLKKWDAKLQ 786
>gi|304273939|gb|ADM18407.1| topoisomerase I [Atrecus punctiventris]
Length = 200
Score = 285 bits (729), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 142/200 (71%), Positives = 166/200 (83%), Gaps = 5/200 (2%)
Query: 296 RYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNAS 355
RYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT+V+NKHL+ELMEGLTAKVFRTYNAS
Sbjct: 1 RYYNEVPVEKRVFKNLQLFMENKAPGDDLFDRLNTAVMNKHLNELMEGLTAKVFRTYNAS 60
Query: 356 ITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKR 415
TLQQQL +L + D S +EKIL+YNRANRAVA+LCNHQR+VPK H+KSM LKEKI KR
Sbjct: 61 FTLQQQLEKLTNEDDSLSEKILSYNRANRAVAILCNHQRAVPKGHEKSMEKLKEKIDLKR 120
Query: 416 KQVKDAERALKDAKK-----AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIAL 470
+ + DAER +KDA+K + + K + DKKK L R++EQL KLE+QETD++ENKTIAL
Sbjct: 121 ESISDAERQVKDAQKDAKRGSVKEKLIYDKKKKMLERMREQLAKLEIQETDRDENKTIAL 180
Query: 471 GTSKLNYLDPRISVTWLASW 490
GTSKLNYLDPRISV W +
Sbjct: 181 GTSKLNYLDPRISVAWCKKY 200
>gi|124506131|ref|XP_001351663.1| topoisomerase I [Plasmodium falciparum 3D7]
gi|790482|emb|CAA58716.1| topoisomerase I [Plasmodium falciparum]
gi|23504591|emb|CAD51470.1| topoisomerase I [Plasmodium falciparum 3D7]
Length = 839
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 166/399 (41%), Positives = 236/399 (59%), Gaps = 44/399 (11%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSM-----------TEKERAVIT 56
++L+ +EE+AT++ I +Y TKE F NF K + S+ T+ ++ I+
Sbjct: 184 IELNAKSEELATYWCSAIGSDYCTKEKFILNFFKTFINSLENDNIIKQENETKLKKGDIS 243
Query: 57 DLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRI 116
+ DF + + ++ EE+ +KEEK++ K Y +D +EKI + +
Sbjct: 244 NFKFIDFMPIKDHLLKLREEKLNKTKEEKEEEKKMRMEKELPYTYALVDWIREKISSNKA 303
Query: 117 EPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVP---PPPPGHKWKEVRHDNQVTW 173
EPPGLFRGRGEHPK G LK+R+ ED++IN SKD+ VP GH W ++ HDN+VTW
Sbjct: 304 EPPGLFRGRGEHPKQGLLKKRIFPEDVVINISKDAPVPRLYDNMCGHNWGDIYHDNKVTW 363
Query: 174 LASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRI 233
LA + +++ Q+KY L+ SK KG KD KYE ARKL ++KIRE+Y+ K+K +
Sbjct: 364 LAYYKDSINDQIKYTFLSAQSKFKGYKDLMKYENARKLKSCVHKIREDYKNKMKNKNIID 423
Query: 234 RQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQL----------------HE 276
+Q A+Y ID LALR G EKD D +ADTVGCCSLRVEHI ++
Sbjct: 424 KQLGTAVYLIDFLALRVGGEKDIDEEADTVGCCSLRVEHISFAHDIPFKSVDSKEQKTND 483
Query: 277 EKDGKPYV-------------VCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDD 323
EK K + + DFLGKDSIRY+N V ++K+ + N+ +F +NK +
Sbjct: 484 EKVNKIPLPTNLESISSEDCYITLDFLGKDSIRYFNTVKIDKQAYINIIIFCKNKNRDEG 543
Query: 324 LFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
+FD++ S LN++L E+M L+AKVFRTYNASITL QQL
Sbjct: 544 VFDQITCSKLNEYLKEIMPTLSAKVFRTYNASITLDQQL 582
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 79/121 (65%), Gaps = 1/121 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA + +++ Q+KY L+ SK KG KD KYE ARKL ++KIRE+Y+ K+K
Sbjct: 361 VTWLAYYKDSINDQIKYTFLSAQSKFKGYKDLMKYENARKLKSCVHKIREDYKNKMKNKN 420
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEEKDEKKIYNKTQR 602
+ +Q A+Y ID LALR G EKD D +ADTVGCCSLRVEHI + K + +K Q+
Sbjct: 421 IIDKQLGTAVYLIDFLALRVGGEKDIDEEADTVGCCSLRVEHISFAHDIPFKSVDSKEQK 480
Query: 603 A 603
Sbjct: 481 T 481
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 83/147 (56%), Gaps = 23/147 (15%)
Query: 363 NELMDPDFSEAEKILA-YNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
N ++ D S +++ YN ANR VA+LCNHQRS+PK HD +M +K++I + +K+
Sbjct: 661 NSPIEVDVSNINELINFYNNANREVAILCNHQRSIPKQHDTTMSKIKKQIELYNEDIKEY 720
Query: 422 ERALKDAKKAGESKAMTDKKKTAL-GRLKEQLLKLEVQETD------------------- 461
++ L+ KK + K + K + L G L+ +K ++E
Sbjct: 721 KKYLQHLKKNSDKKFIFVSKVSTLDGTLRPNKVKENMKEESCKKKLITLIKKVELLNNQM 780
Query: 462 --KEENKTIALGTSKLNYLDPRISVTW 486
+++NKTIALGTSK+NY+DPRI+V +
Sbjct: 781 KVRDDNKTIALGTSKINYMDPRITVAF 807
>gi|354496758|ref|XP_003510492.1| PREDICTED: DNA topoisomerase I, mitochondrial-like [Cricetulus
griseus]
gi|344255602|gb|EGW11706.1| DNA topoisomerase I, mitochondrial [Cricetulus griseus]
Length = 454
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 147/247 (59%), Positives = 187/247 (75%), Gaps = 6/247 (2%)
Query: 246 LALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
LALR GNEK+E + ADTVGCCSL VEH++LH + DG+ +VV DFLGKDSIRY N V VE
Sbjct: 175 LALRTGNEKEEGETADTVGCCSLPVEHVRLHGKADGQEHVVELDFLGKDSIRYNNRVTVE 234
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
K VF+NLQ F+E+K D+LFD L T+ LNKHL LMEGLTA+VFRTYNAS+TLQ+QL
Sbjct: 235 KLVFQNLQHFMEDKDPGDNLFDALTTASLNKHLQGLMEGLTARVFRTYNASVTLQEQLRV 294
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA--- 421
L + S K+LAYNRANRAVA+LCNHQR++PK+ +KSM L++KI K+ QV +A
Sbjct: 295 LTRAEDSLTSKVLAYNRANRAVAILCNHQRAIPKTFEKSMQKLQQKIETKKAQVTEAQVE 354
Query: 422 -ERALKDAKKAGESKAMTD-KKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
E++ D + G SK+ + +K+ L +L+EQL +L + TDKEENK +ALGT+KLNYLD
Sbjct: 355 LEKSKADLRTRGGSKSKSFLRKQQRLLKLEEQLARLHKKATDKEENKQVALGTAKLNYLD 414
Query: 480 PRISVTW 486
PRIS+ W
Sbjct: 415 PRISIAW 421
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 61/86 (70%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS AEE+AT Y +M+ E TKE F NF +DWRK MT +ER +IT L KCDF
Sbjct: 70 GKPVKLSVAAEEVATLYGKMLHLECATKEVFQRNFFRDWRKEMTAEERKLITHLDKCDFV 129
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKD 90
++H +F++K+E R+ + +E+K+ ++
Sbjct: 130 EIHKHFMEKTEARRTLPREKKQVFQN 155
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Query: 559 LALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
LALR GNEK+E + ADTVGCCSL VEH++LH + D
Sbjct: 175 LALRTGNEKEEGETADTVGCCSLPVEHVRLHGKAD 209
>gi|161528830|ref|YP_001582656.1| 2-alkenal reductase [Nitrosopumilus maritimus SCM1]
gi|160340131|gb|ABX13218.1| 2-alkenal reductase [Nitrosopumilus maritimus SCM1]
Length = 551
Score = 281 bits (720), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 184/519 (35%), Positives = 296/519 (57%), Gaps = 48/519 (9%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+++ L+ D EE+ +A+ + Y + F NF D+ K++ K + + DF
Sbjct: 28 GEKVDLNLDQEEMIYQWAKKKDTPYAQDKVFQKNFTADFAKTLDSKFKKI--SYEDIDFS 85
Query: 65 KMHAYFVQKSEERKAMSKEEKKKI----KDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
+ ++ + ++ M+KEEKK I K+ E + +YGV +DG + ++GN+ EPPG
Sbjct: 86 DAYKLVDKEKDLKEMMTKEEKKAIAAKRKELREELKSKYGVAVMDGKEVEVGNYMAEPPG 145
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
+F GRGEHP G+ K RV A+D+ +N K++KVP KW ++ HD WLASW +
Sbjct: 146 IFIGRGEHPLRGRWKPRVTAKDVTLNLGKEAKVPE----GKWGKIIHDKDSMWLASWMDF 201
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ + KY+ L+ SS LK +D +KYE A KL K I KI++ D K+ + A A
Sbjct: 202 LTQKRKYVWLSDSSDLKQGRDKEKYEKAVKLEKEIEKIKKAMVKD--MKDSKKNNVATAC 259
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y I K A+R G+EKDED+ADTVG +LR EHI++ + + FDFLGKDS+R+
Sbjct: 260 YLIYKTAMRVGDEKDEDEADTVGATTLRKEHIKITSD------TIEFDFLGKDSVRWQET 313
Query: 301 VPV---EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
+ V +K+ +NL+ +E KK S+++F + + +NK+LS +++G+TAKVFRTY A+
Sbjct: 314 LKVVGDDKQFQENLKKLIEKKKPSEEIFHDITSRDVNKYLSGIVKGVTAKVFRTYQATTV 373
Query: 358 LQQQLNELMDPDF----SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN 413
++ N L++ D S+ EK+ AN A++CNH+R++PK+ ++S+ K+ +
Sbjct: 374 VK---NYLVNHDNIKGKSDNEKLYHAKLANLEAAIMCNHKRTIPKTFEQSLQKKKDTL-K 429
Query: 414 KRKQVKDAERALKDAKKAGESKAMTD-KKKTALGRLK--------------EQLLKLEVQ 458
KR++ K E+ + KK S+ TD +KK R+K E++ KL++Q
Sbjct: 430 KREREKAWEKTQQTLKKVESSEPKTDTQKKNKEKRIKTLNEQIKKQKQKHKERIEKLKLQ 489
Query: 459 ETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQ 497
E+ + LGTS NY+DPR+ +WT+ V +
Sbjct: 490 VDLSEKTRDYNLGTSLRNYIDPRV----FKAWTDEVGAE 524
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Query: 486 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 545
WLASW + + + KY+ L+ SS LK +D +KYE A KL K I KI++ D K+ +
Sbjct: 194 WLASWMDFLTQKRKYVWLSDSSDLKQGRDKEKYEKAVKLEKEIEKIKKAMVKD--MKDSK 251
Query: 546 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
A A Y I K A+R G+EKDED+ADTVG +LR EHI++
Sbjct: 252 KNNVATACYLIYKTAMRVGDEKDEDEADTVGATTLRKEHIKI 293
>gi|407465318|ref|YP_006776200.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
gi|407048506|gb|AFS83258.1| 2-alkenal reductase [Candidatus Nitrosopumilus sp. AR2]
Length = 555
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 181/515 (35%), Positives = 293/515 (56%), Gaps = 38/515 (7%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ + L + EE+ +A+ + Y + F NF D+ K++ K + + DF
Sbjct: 28 GEPVNLDLNQEEMVYQWAKKKDTPYVQDKVFQKNFTADFAKTLDSKFKKI--SYEDIDFS 85
Query: 65 KMHAYFVQKSEERKAMSKEEKKKI----KDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
+ ++ + ++ M+KEEKK + K+ E + +++G+ +DG + ++GN+ EPPG
Sbjct: 86 NAYKIVDKEKDLKEMMTKEEKKSLAAKRKELREKLKEKFGIAIMDGKEVEVGNYMAEPPG 145
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
+F GRGEHP G+ K RV A+D+ +N K++KVP KW ++ HD WLASW +
Sbjct: 146 IFIGRGEHPLRGRWKPRVTAKDVTLNLGKEAKVPE----GKWGKIIHDKNSMWLASWMDF 201
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ + KY+ L ++ LK ++D +KYE A KLAK INKI++ D KSK+ +I + A A
Sbjct: 202 LTQKRKYVWLADTAGLKQDRDKEKYEKAVKLAKEINKIKDRIVKDMKSKDPKISRIATAC 261
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y I + A+R G+EKD ++ADTVG +LR EHI++ P + FDFLGKDS+R+
Sbjct: 262 YLIYRTAMRVGDEKDPEEADTVGATTLRKEHIKI------TPNAIEFDFLGKDSVRWQET 315
Query: 301 VPVE---KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
V E K+ +NL+ VE KK D++FD + + +N++ S +++GLTAKVFRTY A+
Sbjct: 316 VVAEGHDKQFHENLKKLVEKKKPKDEIFDDITSRHVNQYYSSIVKGLTAKVFRTYLATTV 375
Query: 358 LQQQLNELMDPDFSEA-EKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKIS--NK 414
++ L E + A EK+ AN A++CNH+R++PK+ ++S+ ++ + K
Sbjct: 376 VKNYLVEHDNMKGKTATEKLYHAKLANLEAAMMCNHKRTIPKTFEQSLQKKRDTLKKVEK 435
Query: 415 RKQVKDAERALK---------DAK---KAGESKAMTDKKKTALGRLKEQLLKLEVQETDK 462
+ K + LK DA+ KA K + ++ K + KE+L KLE+Q
Sbjct: 436 EQAWKKTQETLKKVEASEPKTDAQKKTKAKRIKTLNEQIKKQKSKHKERLEKLELQIDLS 495
Query: 463 EENKTIALGTSKLNYLDPRISVTWLASWTENVQGQ 497
E+ K +GTS NY+DPR+ +WT+ V +
Sbjct: 496 EKTKDYNIGTSLRNYIDPRV----FKAWTDEVGAE 526
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 70/102 (68%)
Query: 486 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 545
WLASW + + + KY+ L ++ LK ++D +KYE A KLAK INKI++ D KSK+ +
Sbjct: 194 WLASWMDFLTQKRKYVWLADTAGLKQDRDKEKYEKAVKLAKEINKIKDRIVKDMKSKDPK 253
Query: 546 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
I + A A Y I + A+R G+EKD ++ADTVG +LR EHI++
Sbjct: 254 ISRIATACYLIYRTAMRVGDEKDPEEADTVGATTLRKEHIKI 295
>gi|340345362|ref|ZP_08668494.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum koreensis MY1]
gi|339520503|gb|EGP94226.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum koreensis MY1]
Length = 555
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 179/507 (35%), Positives = 285/507 (56%), Gaps = 40/507 (7%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ + L+ + EE+A +A+ + Y + F NF +D+ K++ K ++S D
Sbjct: 28 GENVDLNLNQEEMAYQWAKKKDTPYAQDKVFQKNFTEDFAKTLPAK----FKNISYQDID 83
Query: 65 KMHAYFVQKSEE--RKAMSKEEKKKI----KDENEAITKEYGVCTIDGHKEKIGNFRIEP 118
HAY + E+ R+ M+KEEKK + K+ E + ++YG +DG + + N+ EP
Sbjct: 84 FSHAYKIVDKEKDLREMMTKEEKKALALKRKELREKLVQKYGKAIMDGKEVDVANYMAEP 143
Query: 119 PGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWT 178
PG+F GRG+HP G+ K RV A+D+ +N K++KVP W ++ HDN WLA WT
Sbjct: 144 PGIFIGRGDHPLRGRWKPRVTAKDVTLNLGKEAKVPE----GNWGKIVHDNDSMWLAGWT 199
Query: 179 ENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + + KY+ L ++ LK ++D KYE A KL+K I KI+E D KSK+ +I + A
Sbjct: 200 DYLTEKRKYVWLADTAGLKQDRDKAKYEKAVKLSKEIEKIKERIVKDMKSKDPKISRIAT 259
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
Y I + A+R G+EKD D+ADTVG +LR EHI + E + FDFLGKDS+R+
Sbjct: 260 VCYLIYRTAMRVGDEKDPDEADTVGATTLRKEHINITEN------TIEFDFLGKDSVRWQ 313
Query: 299 NEVPVE---KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNAS 355
V E K+ +NL+ ++NKK D++F+ + + +N + S ++ GLTAKVFRTY A+
Sbjct: 314 ETVKAEGNDKQFQENLKKLIQNKKPKDEIFEDITSRHVNAYYSSIVSGLTAKVFRTYLAT 373
Query: 356 ITLQQQLNELMD-PDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNK 414
++ L E + + EK+ AN A++CNH+R++PK+++ ++ ++ + N
Sbjct: 374 TMVKNYLKEHDNIKGKTPNEKLYHAKLANLEAAIMCNHKRTIPKTYEDALQKKRDTLKNI 433
Query: 415 RKQVKDAERALKDAKKAGESKAMTDKKKTALGR----LKEQLL-----------KLEVQE 459
K+ + ++ + KKA +A TD +K + L EQ+ KL++Q
Sbjct: 434 AKE-QPWKKTMDALKKAEAMEAKTDAQKKNKAKKIKTLNEQIKKQKEKHSERAEKLQLQI 492
Query: 460 TDKEENKTIALGTSKLNYLDPRISVTW 486
E+ K LGTS NY+DPRI W
Sbjct: 493 DLSEKTKDYNLGTSLRNYIDPRIFKAW 519
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 67/104 (64%)
Query: 486 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 545
WLA WT+ + + KY+ L ++ LK ++D KYE A KL+K I KI+E D KSK+ +
Sbjct: 194 WLAGWTDYLTEKRKYVWLADTAGLKQDRDKAKYEKAVKLSKEIEKIKERIVKDMKSKDPK 253
Query: 546 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHE 589
I + A Y I + A+R G+EKD D+ADTVG +LR EHI + E
Sbjct: 254 ISRIATVCYLIYRTAMRVGDEKDPDEADTVGATTLRKEHINITE 297
>gi|403221778|dbj|BAM39910.1| DNA topoisomerase I [Theileria orientalis strain Shintoku]
Length = 1028
Score = 278 bits (711), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 164/388 (42%), Positives = 223/388 (57%), Gaps = 33/388 (8%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ M L EEIAT +A+ I Y T E + NF + ++ + LS DF
Sbjct: 352 GETMNLPPHIEEIATMWAQSIGTNYETSEIYCKNFWGVFAGKFDKEHQIRKCKLSDVDFS 411
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEY--GVCTIDGHKEKIGNFRIEPPGLF 122
+ ++ ++ +++K + K K + E +EY +D +EK+ + ++EPPGLF
Sbjct: 412 LIKSHLEEEKQKKKENKEFYKAK---QQEDAKREYRFNYALVDWIREKVSSNKLEPPGLF 468
Query: 123 RGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP----PGHKWKEVRHDNQVTWLASWT 178
+GRG HPK G LK R+ +D+I+N SKD+ VP GH WK++ HDN VTWLA +
Sbjct: 469 KGRGLHPKQGLLKLRMFPKDVILNMSKDAPVPKVSNFMREGHCWKDIYHDNTVTWLAYYK 528
Query: 179 ENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK--------- 229
+++ Q KY+ L+ SK KG D+ KY AR+L INKIRE+Y A K
Sbjct: 529 DSINDQYKYMYLSAQSKFKGFHDFLKYNKARELKSYINKIREDYNAKMLCKRDLLSHLFT 588
Query: 230 -EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFD 288
+M +Q A+Y ID LALR G EKD D+ADTVGCCSLRVEHI+ E+K + D
Sbjct: 589 LDMYEKQLGTAVYLIDFLALRVGGEKDADEADTVGCCSLRVEHIKFSEKKKN---TITLD 645
Query: 289 FLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLN-----------TSVLNKHL 337
FLGKDSIRYYN V + + NL F KK S ++F+ +N T+ LN +L
Sbjct: 646 FLGKDSIRYYNTVTLHDVAYDNLAKFCNRKKPSAEIFNLINIVDGKVMTDIQTTKLNDYL 705
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNEL 365
ELM+GL+AKVFRTYNASITLQ Q L
Sbjct: 706 KELMDGLSAKVFRTYNASITLQNQFKRL 733
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 75/119 (63%), Gaps = 10/119 (8%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA + +++ Q KY+ L+ SK KG D+ KY AR+L INKIRE+Y A K
Sbjct: 520 TVTWLAYYKDSINDQYKYMYLSAQSKFKGFHDFLKYNKARELKSYINKIREDYNAKMLCK 579
Query: 543 ----------EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEK 591
+M +Q A+Y ID LALR G EKD D+ADTVGCCSLRVEHI+ E+K
Sbjct: 580 RDLLSHLFTLDMYEKQLGTAVYLIDFLALRVGGEKDADEADTVGCCSLRVEHIKFSEKK 638
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 22/136 (16%)
Query: 373 AEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGN-------LKEKISNKRKQVKDAERAL 425
+E + YN ANR VA+LCNHQRS+PK H+ SM LKE I + VK E
Sbjct: 861 SELLQFYNYANREVAILCNHQRSIPKQHETSMSKLKVQADMLKEDIQELTEYVKHLESNS 920
Query: 426 KDAKK--------AGESKAMTDKKKTALGRLKEQLLKLEVQETD-------KEENKTIAL 470
K+ K G + + K+ + K +L L+ ++ D K+ NKT+AL
Sbjct: 921 KEEFKFTSKVNDVNGNPRKLLTKQGMKMDAAKNKLATLKKKQKDHTIKMRIKDSNKTVAL 980
Query: 471 GTSKLNYLDPRISVTW 486
GTSK+NY+DPRI+V +
Sbjct: 981 GTSKINYMDPRITVAF 996
>gi|440800983|gb|ELR22008.1| eukaryotic dna topoisomerase, putative [Acanthamoeba castellanii
str. Neff]
Length = 445
Score = 278 bits (710), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 159/415 (38%), Positives = 226/415 (54%), Gaps = 59/415 (14%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDW-RKSMTEKERAVITDLSKCDF 63
G+ + L+ D EE+A+FYA +++ E FN NF +D+ R +M R
Sbjct: 36 GEPVDLTPDQEEVASFYASLLDTVNVHNEVFNKNFFRDFPRDAMPGPRR----------- 84
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
EE++ +K E E+ + +GV +DG + N++IEPPGLFR
Sbjct: 85 ------------------PEEREALKAERESERQRHGVALVDGEPAPVANWQIEPPGLFR 126
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPP--------GHKWKEVRHDNQVTWLA 175
GRG+HP+ G+LK RV E I +N + V PP P G +W V HD VTWLA
Sbjct: 127 GRGQHPQAGRLKPRVMPESITLNLGRG--VDPPQPGGGDGAMAGREWGAVVHDQSVTWLA 184
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W ++V G K+I ++P++ ++ +++E AR+L I IRE Y D + + R Q
Sbjct: 185 RWRDHVTGLDKFIFMSPTAASSQTRERERFEAARQLNAHIEAIREAYMEDLNADDERRWQ 244
Query: 236 RAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
A AL+ ID LR G+EK DE +A +VGCCSLRVEH++ FDFLGKDS
Sbjct: 245 CATALWLIDHAGLRVGSEKADESEASSVGCCSLRVEHVRPRAPS-------YFDFLGKDS 297
Query: 295 IRYYNEVPVEKRVFKNLQ-LFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
+RY N + V VF LQ L V +K+ +DD+FDRL+ + + L+ELM GLTA R +N
Sbjct: 298 LRYRNAIEVPPLVFARLQRLVVGDKRSTDDVFDRLSATDVTTRLTELMPGLTASRLRIFN 357
Query: 354 ASITLQQQLNELMDPD-FSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNL 407
S LQ +L+ + P S AEK+L YN ANR VA+ ++H + G L
Sbjct: 358 NSSLLQHELSRPLPPGTLSVAEKLLHYNEANRRVAI---------QTHRAAQGGL 403
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SVTWLA W ++V G K+I ++P++ ++ +++E AR+L I IRE Y D +
Sbjct: 179 SVTWLARWRDHVTGLDKFIFMSPTAASSQTRERERFEAARQLNAHIEAIREAYMEDLNAD 238
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQ 586
+ R Q A AL+ ID LR G+EK DE +A +VGCCSLRVEH++
Sbjct: 239 DERRWQCATALWLIDHAGLRVGSEKADESEASSVGCCSLRVEHVR 283
>gi|329765703|ref|ZP_08257272.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137769|gb|EGG42036.1| 2-alkenal reductase [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 555
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 177/515 (34%), Positives = 287/515 (55%), Gaps = 44/515 (8%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ + + + EE+ +A+ + Y + F NF D+ K++ K ++S D
Sbjct: 28 GESVDIDLNQEEMIYQWAKKKDTPYAQDKVFQKNFTSDFAKTLPAK----FKNISYEDID 83
Query: 65 KMHAYFVQKSEE--RKAMSKEEKKKI----KDENEAITKEYGVCTIDGHKEKIGNFRIEP 118
HAY + E+ R+ M+KEEKK + K E + ++YG +DG + + N+ EP
Sbjct: 84 FSHAYKIVDKEKDIREMMTKEEKKALALKRKQLREKLVQKYGKAIMDGKEVDVANYMAEP 143
Query: 119 PGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWT 178
PG+F GRG+HP G+ K R+ A+D+ +N K++KVP W ++ HDN WLA WT
Sbjct: 144 PGIFIGRGDHPLRGRWKPRITAKDVTLNLGKEAKVPE----GNWGKIVHDNNSMWLAGWT 199
Query: 179 ENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
+ + + KY+ L ++ LK ++D KYE A KL+K I KI+E D KSK+ +I + A
Sbjct: 200 DYLTEKRKYVWLADTAGLKQDRDKAKYEKAVKLSKEIEKIKERIVKDMKSKDPKISRIAT 259
Query: 239 ALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY 298
Y I + A+R G+EKD D+ADTVG +LR EHI + ++ + FDFLGKDS+R+
Sbjct: 260 VCYLIYRTAMRVGDEKDPDEADTVGATTLRKEHINITDD------AIEFDFLGKDSVRWQ 313
Query: 299 NEVPVE---KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNAS 355
V E K+ +NL+ ++NKK D++F+ + + +N + S ++ GLTAKVFRTY A+
Sbjct: 314 ETVKAEGNDKQFQENLKKLIQNKKPKDEIFEDITSRHVNAYYSSIVSGLTAKVFRTYLAT 373
Query: 356 ITLQQQLNELMD-PDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNK 414
++ L E + + + EK+ AN A++CNH+R++PK+++ ++ N ++ + +
Sbjct: 374 TMVKNYLKEHDNVKNKTPNEKLYHAKLANLEAAIMCNHKRTIPKTYENTLENKRQTLKSI 433
Query: 415 RKQVKDAERALKDAKKAGESKAMTDKK---------------KTALGRLKEQLLKLEVQE 459
K + + L+ KKA +A TD + K + KE++ KL++Q
Sbjct: 434 SKD-QLWTKTLESLKKAESMEAKTDAQKKNKAKKIKTLNEQIKKQKEKHKERVEKLQLQI 492
Query: 460 TDKEENKTIALGTSKLNYLDPRISVTWLASWTENV 494
E+ K LGTS NY+DPRI +WT+ V
Sbjct: 493 DLSEKTKDYNLGTSLRNYIDPRI----FKAWTDEV 523
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 68/105 (64%)
Query: 486 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 545
WLA WT+ + + KY+ L ++ LK ++D KYE A KL+K I KI+E D KSK+ +
Sbjct: 194 WLAGWTDYLTEKRKYVWLADTAGLKQDRDKAKYEKAVKLSKEIEKIKERIVKDMKSKDPK 253
Query: 546 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
I + A Y I + A+R G+EKD D+ADTVG +LR EHI + ++
Sbjct: 254 ISRIATVCYLIYRTAMRVGDEKDPDEADTVGATTLRKEHINITDD 298
>gi|430732171|gb|AGA55486.1| topoisomerase, partial [Carabus ghiliani]
gi|430732197|gb|AGA55499.1| topoisomerase, partial [Carabus guadarramus]
gi|430732199|gb|AGA55500.1| topoisomerase, partial [Carabus guadarramus]
gi|430732201|gb|AGA55501.1| topoisomerase, partial [Carabus guadarramus]
Length = 205
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 141/202 (69%), Positives = 168/202 (83%), Gaps = 5/202 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER ++DA++ + ++ +K KK AL +L++QL++L VQETDK+E
Sbjct: 121 KIEQKKDSIMEMERQVQDAQRQAKRGSVKEKVVYDKKKKALDKLRDQLVRLNVQETDKDE 180
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
NK+IALGTSKLNYLDPRISV W
Sbjct: 181 NKSIALGTSKLNYLDPRISVAW 202
>gi|430732191|gb|AGA55496.1| topoisomerase, partial [Carabus riffensis]
Length = 205
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 141/202 (69%), Positives = 168/202 (83%), Gaps = 5/202 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER ++DA++ + ++ +K KK AL +L++QL++L VQETDK+E
Sbjct: 121 KIEQKKDTIMEMERQVQDAQRQAKRGSVKEKVVYDKKKKALDKLRDQLVRLNVQETDKDE 180
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
NK+IALGTSKLNYLDPRISV W
Sbjct: 181 NKSIALGTSKLNYLDPRISVAW 202
>gi|315427867|dbj|BAJ49459.1| DNA topoisomerase I [Candidatus Caldiarchaeum subterraneum]
Length = 539
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 173/493 (35%), Positives = 283/493 (57%), Gaps = 46/493 (9%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ +KL EE+A +A + Y F NF+ D+ K+ + + V +++ DF
Sbjct: 29 GETVKLDPLQEEMAYAWALKKDTPYVQDPVFQKNFLTDFLKTFNGRFQDVT--INEIDFS 86
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKE----YGVCTIDGHKEKIGNFRIEPPG 120
+++ Y V++ + KA KE +KKI E + + +E YG +DG + +I N+ +EPPG
Sbjct: 87 EVYEY-VERERQLKA-DKEYRKKISAERKRLREELKARYGWAEMDGKRFEIANWMVEPPG 144
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
+F GRG HP G+ K RV EDI +N +D+ P PPG+ W ++ HD+ WLA W +
Sbjct: 145 IFMGRGNHPLRGRWKPRVYEEDITLNLGEDA---PVPPGN-WGQIVHDHDSMWLARWDDK 200
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ G+ KY+ L+ ++ +K ++D KY+ A L I+++RE +SKE ++R+ A+A
Sbjct: 201 LTGKEKYVWLSDTADIKQKRDKSKYDKAEMLENHIDRVREKIFKGLRSKEPKMREIALAC 260
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYY-- 298
Y ID+LA+R G+EKD D+ADTVG +LRVEH++L E++ + FDFLGKDS+R+
Sbjct: 261 YLIDRLAMRVGDEKDPDEADTVGATTLRVEHVKLLEDR------IEFDFLGKDSVRWQKS 314
Query: 299 ----NEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
NE P ++VF+ L +E KK D +F +N+ +N+ L ++++GLTAKVFRTY A
Sbjct: 315 IDLRNEPPEVRQVFEEL---LEGKKEGDQIFQNINSRHVNRFLGKIVKGLTAKVFRTYIA 371
Query: 355 SITLQQQLNELMDPDFSEAEKILAYNR-ANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN 413
+ ++ L + + EK + Y + AN A NH+R+ PK+ ++S+ +E++
Sbjct: 372 TKIVKDFLAAIPREKVTSQEKFIYYAKLANLKAAEALNHKRAPPKNWEQSIQKKEERVKK 431
Query: 414 KRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTS 473
+Q+++AE ++KKK R+ E+L K E+ + + L TS
Sbjct: 432 LMQQLREAE---------------SEKKK---ARIAERLEKAELNLDLAVKVRDYNLATS 473
Query: 474 KLNYLDPRISVTW 486
NY+DPR+ W
Sbjct: 474 LRNYIDPRVYKAW 486
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 486 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 545
WLA W + + G+ KY+ L+ ++ +K ++D KY+ A L I+++RE +SKE +
Sbjct: 193 WLARWDDKLTGKEKYVWLSDTADIKQKRDKSKYDKAEMLENHIDRVREKIFKGLRSKEPK 252
Query: 546 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKIYNKTQRAKF 605
+R+ A+A Y ID+LA+R G+EKD D+ADTVG +LRVEH++L E++ E ++ +
Sbjct: 253 MREIALACYLIDRLAMRVGDEKDPDEADTVGATTLRVEHVKLLEDRIE---FDFLGKDSV 309
Query: 606 RW--AIDM 611
RW +ID+
Sbjct: 310 RWQKSIDL 317
>gi|430732175|gb|AGA55488.1| topoisomerase, partial [Carabus lusitanicus helluo]
gi|430732179|gb|AGA55490.1| topoisomerase, partial [Carabus macrocephalus macrocephalus]
gi|430732187|gb|AGA55494.1| topoisomerase, partial [Carabus lusitanicus lusitanicus]
gi|430732195|gb|AGA55498.1| topoisomerase, partial [Carabus macrocephalus barcelecoanus]
gi|430732205|gb|AGA55503.1| topoisomerase, partial [Carabus dufouri baguenai]
Length = 205
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 141/202 (69%), Positives = 167/202 (82%), Gaps = 5/202 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TLQQQL+EL D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLQQQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER ++DA++ + ++ +K KK AL +L++QL++L VQETDK+E
Sbjct: 121 KIEQKKDSIMEMERQVQDAQRQAKRGSVKEKVVYDKKKKALDKLRDQLVRLNVQETDKDE 180
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
NK+IALGTSKLNYLDPRISV W
Sbjct: 181 NKSIALGTSKLNYLDPRISVAW 202
>gi|84995602|ref|XP_952523.1| DNA topoisomerase i [Theileria annulata strain Ankara]
gi|65302684|emb|CAI74791.1| DNA topoisomerase i, putative [Theileria annulata]
Length = 999
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 159/378 (42%), Positives = 225/378 (59%), Gaps = 28/378 (7%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVIT---DLSKC 61
G+ + L + EEIAT +A+ + Y T E + NF W+ +++ E+ LS
Sbjct: 363 GETIHLPPNLEEIATMWAQSMGTNYETSEIYCKNF---WQVFVSKFEKDHFIRRCKLSDA 419
Query: 62 DFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGL 121
DF + + +++ +++K +KE K + E+ + +D +EK+ + ++EPPGL
Sbjct: 420 DFSLIKNH-LEEEKQKKKDNKEFYKAKQQEDAKREYRFNYALVDWVREKVSSNKLEPPGL 478
Query: 122 FRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP----PGHKWKEVRHDNQVTWLASW 177
F+GRG HPK G LK R+ +D+I+N SKD+ VP GH WK++ HDN VTWLA +
Sbjct: 479 FKGRGLHPKQGLLKSRMFPKDVILNLSKDAPVPKVTNFQREGHSWKDIYHDNSVTWLAYY 538
Query: 178 TENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRI---- 233
+++ Q KY+ L+ SK KG D+ KY AR+L I KIR++Y K M I
Sbjct: 539 KDSINDQFKYMYLSAQSKFKGFHDFLKYNKARELKAYIQKIRDDYNT--KMLCMTIIYTI 596
Query: 234 ------RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCF 287
+Q A+Y ID LALR G EKD D+ADTVGCCSLRVEHI+ E+K +
Sbjct: 597 TLDIYEKQLGTAVYLIDYLALRVGGEKDADEADTVGCCSLRVEHIKFSEKKKN---TITL 653
Query: 288 DFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAK 347
DFLGKDSIRY+N + + NL F KK S+ +F ++NT+ LN++L ELM+GL+AK
Sbjct: 654 DFLGKDSIRYFNT--LNDVAYDNLAKFCNRKKSSEGIFSKINTNKLNEYLRELMDGLSAK 711
Query: 348 VFRTYNASITLQQQLNEL 365
VFRTYNASITLQ Q L
Sbjct: 712 VFRTYNASITLQNQFKRL 729
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/119 (48%), Positives = 73/119 (61%), Gaps = 12/119 (10%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
SVTWLA + +++ Q KY+ L+ SK KG D+ KY AR+L I KIR++Y K
Sbjct: 531 SVTWLAYYKDSINDQFKYMYLSAQSKFKGFHDFLKYNKARELKAYIQKIRDDYNT--KML 588
Query: 543 EMRI----------RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEK 591
M I +Q A+Y ID LALR G EKD D+ADTVGCCSLRVEHI+ E+K
Sbjct: 589 CMTIIYTITLDIYEKQLGTAVYLIDYLALRVGGEKDADEADTVGCCSLRVEHIKFSEKK 647
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 22/136 (16%)
Query: 373 AEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGN-------LKEKISNKRKQVKDAERAL 425
+E + YN ANR VA+LCNHQRS+PK H+ SM LKE I + K +
Sbjct: 832 SELLQFYNYANREVAILCNHQRSIPKQHETSMTKLKLQAKMLKEDIQELNEYCKHLQSNS 891
Query: 426 KDAKK--------AGESKAMTDKKKTALGRLKEQLLKLE-------VQETDKEENKTIAL 470
KD K G + + K L K +L L+ ++ T K+ NKT+AL
Sbjct: 892 KDEFKFESKTKDVNGNPRKLITKPGMKLEAAKNKLATLKKKQKDHNIKMTIKDSNKTVAL 951
Query: 471 GTSKLNYLDPRISVTW 486
GTSK+NY+DPRI+V +
Sbjct: 952 GTSKINYMDPRITVAF 967
>gi|430732223|gb|AGA55512.1| topoisomerase, partial [Carabus melancholicus]
Length = 205
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/202 (70%), Positives = 169/202 (83%), Gaps = 5/202 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TLQQQL+EL + + + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLQQQLDELTNAEDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER ++DA++ + ++ +K KK AL +LK+QL+KLEVQETDK+E
Sbjct: 121 KIEQKKDSIMEMERQVQDAQRQAKRGSVKEKVVYDKKKKALDKLKDQLVKLEVQETDKDE 180
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
NK+IALGTSKLNYLDPRISV W
Sbjct: 181 NKSIALGTSKLNYLDPRISVAW 202
>gi|430732193|gb|AGA55497.1| topoisomerase, partial [Carabus lusitanicus brevis]
Length = 204
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 141/202 (69%), Positives = 167/202 (82%), Gaps = 5/202 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TLQQQL+EL D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLQQQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER ++DA++ + ++ +K KK AL +L++QL++L VQETDK+E
Sbjct: 121 KIEQKKDSIMEMERQVQDAQRQAKRGSVKEKVVYDKKKKALDKLRDQLVRLNVQETDKDE 180
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
NK+IALGTSKLNYLDPRISV W
Sbjct: 181 NKSIALGTSKLNYLDPRISVAW 202
>gi|430732219|gb|AGA55510.1| topoisomerase, partial [Carabus rutilans]
gi|430732225|gb|AGA55513.1| topoisomerase, partial [Carabus rugosus]
Length = 205
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 144/202 (71%), Positives = 167/202 (82%), Gaps = 5/202 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TLQQQL+EL + + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLQQQLDELTNDGDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER ++DA++ + K + DKKK AL +LK+QL+KL VQETDK+E
Sbjct: 121 KIEQKKDSILEMERQVQDAQRQAKRGSVKEKVVYDKKKKALEKLKDQLVKLNVQETDKDE 180
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
NK+IALGTSKLNYLDPRISV W
Sbjct: 181 NKSIALGTSKLNYLDPRISVAW 202
>gi|167042738|gb|ABZ07458.1| putative eukaryotic DNA topoisomerase I, catalytic core [uncultured
marine crenarchaeote HF4000_ANIW133O4]
Length = 563
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 172/488 (35%), Positives = 272/488 (55%), Gaps = 38/488 (7%)
Query: 29 YTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKI 88
Y F NF+ D+ K+ K + + S DF H ++ EE++ ++KE+KK +
Sbjct: 59 YIEDPIFQKNFVSDFAKTFNGKFKNL--QYSDIDFSLAHQLVDKEKEEKELLTKEDKKAL 116
Query: 89 ----KDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDII 144
K+ E + +YG IDG + +IGN+ EPPG+F GRGEHP G+ K RV A+D+
Sbjct: 117 AIKRKEIREEMKAKYGNGIIDGKEVEIGNYMAEPPGIFMGRGEHPMRGRYKLRVTAKDVT 176
Query: 145 INCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQK 204
+N K++K+P KW ++ HD W+ASW + + + KY+ L ++ +K E D K
Sbjct: 177 LNLGKEAKIPEA----KWGKIVHDRNSMWIASWMDILTQKRKYVWLADTAGIKQEMDQAK 232
Query: 205 YETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGC 264
Y+ A+ L+K I ++ D +S E + ++ A A Y I + ++R G+EKD D+ADTVG
Sbjct: 233 YDKAKNLSKEIENVKAQIIKDMQSNEQKNKRIATACYLIYRTSMRVGDEKDPDEADTVGA 292
Query: 265 CSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE---KRVFKNLQLFVENKKGS 321
+LR EHI+L E + FDFLGKD +R+ +P E K+ + NL+ F+ NKK S
Sbjct: 293 TTLRKEHIKLSEN------AIEFDFLGKDGVRWRETIPAEGHDKQFYDNLKEFIANKKES 346
Query: 322 DDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMD-PDFSEAEKILAYN 380
++FD + + +N + S +++GL+AKVFRTY AS + + L D S+ +K+
Sbjct: 347 QEIFDGIASRHVNAYYSTIVKGLSAKVFRTYLASSVVSKNLRAHDDIKSKSDMKKLFHAK 406
Query: 381 RANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN--KRKQVKDAERALKDAK----KAGES 434
AN A++CNH+R++PK+ + S+ K+ + N K K K +E LK A+ K +
Sbjct: 407 SANLDAAIMCNHKRTIPKNFEASLQKKKDTLENVEKTKPWKKSEVLLKKAQSKITKTEKQ 466
Query: 435 KAMTDK--------KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
K M ++ K + E++ KLE+Q E+ + LGTS NY+DPRI
Sbjct: 467 KEMQNERIKKIKTMIKKRKTKHAERIEKLELQINLTEKTRDYNLGTSLRNYIDPRI---- 522
Query: 487 LASWTENV 494
+WT+ V
Sbjct: 523 FKAWTDEV 530
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 65/104 (62%)
Query: 486 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 545
W+ASW + + + KY+ L ++ +K E D KY+ A+ L+K I ++ D +S E +
Sbjct: 201 WIASWMDILTQKRKYVWLADTAGIKQEMDQAKYDKAKNLSKEIENVKAQIIKDMQSNEQK 260
Query: 546 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHE 589
++ A A Y I + ++R G+EKD D+ADTVG +LR EHI+L E
Sbjct: 261 NKRIATACYLIYRTSMRVGDEKDPDEADTVGATTLRKEHIKLSE 304
>gi|430732211|gb|AGA55506.1| topoisomerase, partial [Carabus problematicus]
Length = 204
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 140/201 (69%), Positives = 166/201 (82%), Gaps = 5/201 (2%)
Query: 291 GKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
GKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFR
Sbjct: 1 GKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFR 60
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS TLQQQL+EL D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKEK
Sbjct: 61 TYNASWTLQQQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEK 120
Query: 411 ISNKRKQVKDAERALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEEN 465
I K+ + + ER ++DA++ + ++ +K KK AL +L++QL++L VQETDK+EN
Sbjct: 121 IEQKKDSIMEMERQVQDAQRQAKRGSVKEKVVYDKKKKALDKLRDQLVRLNVQETDKDEN 180
Query: 466 KTIALGTSKLNYLDPRISVTW 486
K+IALGTSKLNYLDPRISV W
Sbjct: 181 KSIALGTSKLNYLDPRISVAW 201
>gi|315426172|dbj|BAJ47816.1| DNA topoisomerase I [Candidatus Caldiarchaeum subterraneum]
gi|343485028|dbj|BAJ50682.1| DNA topoisomerase I [Candidatus Caldiarchaeum subterraneum]
Length = 539
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 169/490 (34%), Positives = 281/490 (57%), Gaps = 40/490 (8%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ +KL EE+A +A + Y F NF+ D+ K+ + + V +++ DF
Sbjct: 29 GETVKLDPLQEEMAYAWALKKDTPYVQDPVFQKNFLTDFLKTFNGRFQDVT--INEIDFS 86
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKE----YGVCTIDGHKEKIGNFRIEPPG 120
+++ Y V++ + KA KE +KKI E + + +E YG +DG + +I N+ +EPPG
Sbjct: 87 EVYEY-VERERQLKA-DKEYRKKISAERKRLREELKARYGWAEMDGKRFEIANWMVEPPG 144
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
+F GRG HP G+ K RV EDI +N +D+ P PPG+ W ++ HD+ WLA W +
Sbjct: 145 IFMGRGNHPLRGRWKPRVYEEDITLNLGEDA---PVPPGN-WGQIVHDHDSMWLARWDDK 200
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ G+ KY+ L+ ++ +K ++D KY+ A L I+++RE +SKE ++R+ A+A
Sbjct: 201 LTGKEKYVWLSDTADIKQKRDKSKYDKAEMLESHIDRVREKIFKGLRSKEPKMREIALAC 260
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID+LA+R G+EKD D+ADTVG +LRVEH++L E++ + FDFLGKDS+R+
Sbjct: 261 YLIDRLAMRVGDEKDPDEADTVGATTLRVEHVKLLEDR------IEFDFLGKDSVRWQKS 314
Query: 301 VPVEKRVFKNLQLF---VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
+ + K + Q+F +E KK D +F +N+ +N+ L ++++GLTAKVFRTY A+
Sbjct: 315 IDLRKEPPEVRQVFEELLEGKKEGDQIFQNINSRHVNRFLGKIVKGLTAKVFRTYIATKI 374
Query: 358 LQQQLNELMDPDFSEAEKILAYNR-ANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRK 416
++ L + + E+ + Y + AN A NH+R+ PK+ ++S+ +E++ +
Sbjct: 375 VKDFLAAIPREKVTSQERFIYYAKLANLKAAEALNHKRAPPKNWEQSIQKKEERVKKLMQ 434
Query: 417 QVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLN 476
Q+++AE ++KKK R+ E+L K E+ + + L TS N
Sbjct: 435 QLREAE---------------SEKKK---ARIAERLEKAELNLDLAVKVRDYNLATSLRN 476
Query: 477 YLDPRISVTW 486
Y+DPR+ W
Sbjct: 477 YIDPRVYKAW 486
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 84/128 (65%), Gaps = 5/128 (3%)
Query: 486 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 545
WLA W + + G+ KY+ L+ ++ +K ++D KY+ A L I+++RE +SKE +
Sbjct: 193 WLARWDDKLTGKEKYVWLSDTADIKQKRDKSKYDKAEMLESHIDRVREKIFKGLRSKEPK 252
Query: 546 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKIYNKTQRAKF 605
+R+ A+A Y ID+LA+R G+EKD D+ADTVG +LRVEH++L E++ E ++ +
Sbjct: 253 MREIALACYLIDRLAMRVGDEKDPDEADTVGATTLRVEHVKLLEDRIE---FDFLGKDSV 309
Query: 606 RW--AIDM 611
RW +ID+
Sbjct: 310 RWQKSIDL 317
>gi|407462983|ref|YP_006774300.1| 2-alkenal reductase [Candidatus Nitrosopumilus koreensis AR1]
gi|407046605|gb|AFS81358.1| 2-alkenal reductase [Candidatus Nitrosopumilus koreensis AR1]
Length = 553
Score = 271 bits (693), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 178/511 (34%), Positives = 287/511 (56%), Gaps = 40/511 (7%)
Query: 10 LSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAY 69
LS + EE+ +A+ + Y + F NF D+ K++ K + + DF +
Sbjct: 33 LSLEQEEMVYQWAKKKDTPYAQDKVFQKNFTADFAKTLDSKFKKI--SYEDIDFSDAYKL 90
Query: 70 FVQKSEERKAMSKEEKKKI----KDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGR 125
++ + ++ M+KEEKK I K+ E + +YGV +DG K ++GN+ EPPG+F GR
Sbjct: 91 VDKEKDLKEMMTKEEKKAIAAKRKELREELKAKYGVAIMDGIKVEVGNYMAEPPGIFIGR 150
Query: 126 GEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQV 185
GEHP G+ K RV +D+ +N K++K+P KW ++ HD WLASW + + +
Sbjct: 151 GEHPLRGRWKPRVTPKDVTLNMGKEAKIPE----GKWGKIIHDKDSMWLASWMDFLTQKR 206
Query: 186 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDK 245
KY+ L ++ LK ++D +KYE A KLAK I KI++ D KS + +I + A A Y I +
Sbjct: 207 KYVWLADTAGLKQDRDKEKYEKAVKLAKEIEKIKDRIVKDMKSADPKISRIATACYLIYR 266
Query: 246 LALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE- 304
A+R G+EKD ++ADTVG +LR EHI++ + + FDFLGKDS+R+ V E
Sbjct: 267 TAMRVGDEKDPEEADTVGATTLRKEHIKITSD------AIEFDFLGKDSVRWQETVKAEG 320
Query: 305 --KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
K+ +NL+ VE KK D++F + + +N + S +++GLTAKVFRTY A+ ++ L
Sbjct: 321 QDKQFQENLKKLVEKKKPKDEIFHDITSRHVNAYYSSIVKGLTAKVFRTYLATTVVKDYL 380
Query: 363 NELMD-PDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
E + S+ EK+ AN A++CNH+R++PK+ ++S+ K+ + N+ K+ K
Sbjct: 381 KEHDNMKGKSDNEKLYHAKLANLEAAIMCNHKRTIPKTFEQSLQKKKDTLKNREKE-KAW 439
Query: 422 ERALKDAKKAGESKAMTD-KKKTALGRLK--------------EQLLKLEVQETDKEENK 466
E+ + KK ++ T+ +KK R+K E++ KL++Q E +
Sbjct: 440 EKTQQTLKKVESTEPKTETQKKNKAKRIKTLNEQIKKQKQKHKERIEKLKLQVDLSERTR 499
Query: 467 TIALGTSKLNYLDPRISVTWLASWTENVQGQ 497
LGTS NY+DPR+ +WT+ V +
Sbjct: 500 DYNLGTSLRNYIDPRV----FKAWTDEVGAE 526
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 68/102 (66%)
Query: 486 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 545
WLASW + + + KY+ L ++ LK ++D +KYE A KLAK I KI++ D KS + +
Sbjct: 194 WLASWMDFLTQKRKYVWLADTAGLKQDRDKEKYEKAVKLAKEIEKIKDRIVKDMKSADPK 253
Query: 546 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
I + A A Y I + A+R G+EKD ++ADTVG +LR EHI++
Sbjct: 254 ISRIATACYLIYRTAMRVGDEKDPEEADTVGATTLRKEHIKI 295
>gi|430732215|gb|AGA55508.1| topoisomerase, partial [Carabus nemoralis]
Length = 205
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/202 (69%), Positives = 167/202 (82%), Gaps = 5/202 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TLQQQL+EL + + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLQQQLDELTNDGDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER ++DA++ + ++ +K KK AL +LK+QL++L VQETDK+E
Sbjct: 121 KIEQKKDSIAEMERQVQDAQRQAKRGSVKEKVVYDKKKKALDKLKDQLVRLNVQETDKDE 180
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
NK+IALGTSKLNYLDPRISV W
Sbjct: 181 NKSIALGTSKLNYLDPRISVAW 202
>gi|430732217|gb|AGA55509.1| topoisomerase, partial [Carabus monilis]
Length = 205
Score = 270 bits (690), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 141/202 (69%), Positives = 167/202 (82%), Gaps = 5/202 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LG+DSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGRDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TLQQQL+EL + + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLQQQLDELTNDGDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER ++DA++ + ++ +K KK AL +LK+QL+KL VQETDK+E
Sbjct: 121 KIEQKKDSILEMERQVQDAQRQAKRGSVKEKVVYDKKKKALDKLKDQLVKLNVQETDKDE 180
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
NK+IALGTSKLNYLDPRISV W
Sbjct: 181 NKSIALGTSKLNYLDPRISVAW 202
>gi|167044902|gb|ABZ09569.1| putative eukaryotic DNA topoisomerase I, catalytic core [uncultured
marine crenarchaeote HF4000_APKG8D22]
Length = 563
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 168/489 (34%), Positives = 269/489 (55%), Gaps = 40/489 (8%)
Query: 29 YTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKI 88
Y F NF+ D+ K+ K + + S DF + ++ EE++ ++KE+KK +
Sbjct: 59 YIEDSIFQKNFVSDFAKTFNGKFKNL--QYSDIDFSLAYQLVDKEKEEKELLTKEDKKAL 116
Query: 89 ----KDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDII 144
K+ E + +YG IDG + +IGN+ EPPG+F GRGEHP G+ K RV A+D+
Sbjct: 117 AIKRKEIREEMKAKYGNGIIDGKEVEIGNYMAEPPGIFMGRGEHPMRGRYKLRVTAKDVT 176
Query: 145 INCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQK 204
+N K++K+P KW ++ HD W+ASW + + + KY+ L ++ +K E D K
Sbjct: 177 LNLGKEAKIPEA----KWGKIVHDRNSMWIASWMDILTQKRKYVWLADTAGIKQEMDQAK 232
Query: 205 YETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGC 264
Y+ A+ L+K I ++ D +S E + ++ A A Y I + ++R G+EKD D+ADTVG
Sbjct: 233 YDKAKNLSKEIENVKAQIIKDMQSNEQKNKRIATACYLIYRTSMRVGDEKDPDEADTVGA 292
Query: 265 CSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE---KRVFKNLQLFVENKKGS 321
+LR EHI+L E + FDFLGKD +R+ +P E K+ + NL+ F+ NKK S
Sbjct: 293 TTLRKEHIKLSEN------AIEFDFLGKDGVRWRETIPAEGHDKQFYDNLKEFIANKKES 346
Query: 322 DDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMD-PDFSEAEKILAYN 380
++FD + + +N + S +++GL+AKVFRTY AS + + L D S+ +K+
Sbjct: 347 QEIFDGIASRHVNAYYSTIVKGLSAKVFRTYLASSVVSKNLRAHDDIKSKSDMKKLFHAK 406
Query: 381 RANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDK 440
AN A++CNH+R++PK+ + S+ K+ + N K K +++ KKA T+K
Sbjct: 407 SANLDAAIMCNHKRTIPKNFEASLQKKKDTLENVEK-TKPWKKSAVLLKKAQSKITKTEK 465
Query: 441 KK---------------TALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVT 485
+K + E++ KLE+Q E+ + LGTS NY+DPRI
Sbjct: 466 QKEMQNERIKKIKTMIKKRKTKHAERIEKLELQINLTEKTRDYNLGTSLRNYIDPRI--- 522
Query: 486 WLASWTENV 494
+WT+ V
Sbjct: 523 -FKAWTDEV 530
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 65/104 (62%)
Query: 486 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 545
W+ASW + + + KY+ L ++ +K E D KY+ A+ L+K I ++ D +S E +
Sbjct: 201 WIASWMDILTQKRKYVWLADTAGIKQEMDQAKYDKAKNLSKEIENVKAQIIKDMQSNEQK 260
Query: 546 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHE 589
++ A A Y I + ++R G+EKD D+ADTVG +LR EHI+L E
Sbjct: 261 NKRIATACYLIYRTSMRVGDEKDPDEADTVGATTLRKEHIKLSE 304
>gi|118575388|ref|YP_875131.1| DNA topoisomerase IB [Cenarchaeum symbiosum A]
gi|118193909|gb|ABK76827.1| DNA topoisomerase IB [Cenarchaeum symbiosum A]
Length = 519
Score = 265 bits (678), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 177/502 (35%), Positives = 285/502 (56%), Gaps = 49/502 (9%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK++ L+ EE+A +A+ + Y + F NF +D+ K + K + DL DF
Sbjct: 28 GKQVNLTPLQEEMAYQWAKKKDTPYAQDKVFQKNFARDFAKELGIK--LLYKDL---DFS 82
Query: 65 KMHAYFVQKSEERKAMSKEEKKKI----KDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
+ + + +++ M+KEEKK+I K+ E + +YG+ +DG + +I ++ EPPG
Sbjct: 83 EAYRLVDMEKDKKDMMTKEEKKEIAAKRKEIREGLKAKYGIAVMDGKEVEIASYMAEPPG 142
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
+F GRG+HP GK KRR+ +D+++N +K PP KWK++ H+ W+A WT+N
Sbjct: 143 IFIGRGKHPLRGKWKRRIGPQDVVLNMGTKAKAPP----GKWKKIVHEKDGIWIAKWTDN 198
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ + KY+ L ++ LK E+D KYE A L+K I +I D KSK+ +I + A A
Sbjct: 199 LVKKDKYVWLADTAGLKQERDRSKYEKAVALSKKIGEIEAKIVKDMKSKDPKISKIATAC 258
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y I + A+R G+EKD+D+ADTVG +LR EHI++ DG V+ FDFLGKDSIR+ +
Sbjct: 259 YLIYRTAMRVGDEKDKDEADTVGATTLRKEHIRIS---DG---VIEFDFLGKDSIRWNEK 312
Query: 301 VPV---EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASIT 357
+ V +++ +NLQ V++ K D++F + +S +N++ S +++G+TAKVFRTY AS
Sbjct: 313 LKVTGDDEQFSRNLQGLVKSIKPKDEIFKDIRSSDVNRYYSGIVKGVTAKVFRTYLASKK 372
Query: 358 LQQQL--NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKR 415
+ + L N+ + S K+ AN A++CNH+R+VPK+ K+
Sbjct: 373 VSEYLRKNDKIRSK-SAFFKLYHAKSANLEAAIMCNHKRTVPKTFKKA------------ 419
Query: 416 KQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
E+ + KKA + TDK+K R KE++ K+ +Q + + +GTS
Sbjct: 420 -----LEKKKETLKKAKGATPKTDKQKE---RKKERIEKIGLQIKLAQNTRDYNVGTSLR 471
Query: 476 NYLDPRISVTWLASWTENVQGQ 497
NY+DPRI +WT+ V +
Sbjct: 472 NYIDPRI----FKAWTDEVGAE 489
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/104 (44%), Positives = 68/104 (65%)
Query: 486 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 545
W+A WT+N+ + KY+ L ++ LK E+D KYE A L+K I +I D KSK+ +
Sbjct: 191 WIAKWTDNLVKKDKYVWLADTAGLKQERDRSKYEKAVALSKKIGEIEAKIVKDMKSKDPK 250
Query: 546 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHE 589
I + A A Y I + A+R G+EKD+D+ADTVG +LR EHI++ +
Sbjct: 251 ISKIATACYLIYRTAMRVGDEKDKDEADTVGATTLRKEHIRISD 294
>gi|41056366|emb|CAA34500.2| topoisomerase I [Homo sapiens]
Length = 225
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 133/196 (67%), Positives = 156/196 (79%), Gaps = 6/196 (3%)
Query: 301 VPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ 360
VPVEKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQ
Sbjct: 1 VPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQ 60
Query: 361 QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKD 420
QL EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ D
Sbjct: 61 QLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLAD 120
Query: 421 AERALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSK 474
A R LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSK
Sbjct: 121 ARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSK 180
Query: 475 LNYLDPRISVTWLASW 490
LNYLDPRI+V W W
Sbjct: 181 LNYLDPRITVAWCKKW 196
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 202 KIYNKTQREKFAWAIDMADEDYEF 225
>gi|430732173|gb|AGA55487.1| topoisomerase, partial [Carabus dufouri]
Length = 196
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 136/196 (69%), Positives = 163/196 (83%), Gaps = 5/196 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TLQQQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLQQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER ++DA++ + ++ +K KK AL +L++QL++L VQETDK+E
Sbjct: 121 KIEQKKDSIMEMERQVQDAQRQAKRGSVKEKVVYDKKKKALDKLRDQLVRLNVQETDKDE 180
Query: 465 NKTIALGTSKLNYLDP 480
NK+IALGTSKLNYLDP
Sbjct: 181 NKSIALGTSKLNYLDP 196
>gi|430732177|gb|AGA55489.1| topoisomerase, partial [Carabus dufouri]
Length = 195
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 135/195 (69%), Positives = 161/195 (82%), Gaps = 5/195 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TLQQQL+EL D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLQQQLDELTXADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER ++DA++ + ++ +K KK AL +L++QL++L VQETDK+E
Sbjct: 121 KIEQKKDSIMEMERQVQDAQRQAKRGSVKEKVVYDKKKKALDKLRDQLVRLNVQETDKDE 180
Query: 465 NKTIALGTSKLNYLD 479
NK+IALGTSKLNYLD
Sbjct: 181 NKSIALGTSKLNYLD 195
>gi|195385739|ref|XP_002051562.1| GJ16237 [Drosophila virilis]
gi|194148019|gb|EDW63717.1| GJ16237 [Drosophila virilis]
Length = 557
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 167/485 (34%), Positives = 254/485 (52%), Gaps = 65/485 (13%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
++L++ AEE+ATFYA+++ + FN NF KD+R ++ ++R T C+F+K+H
Sbjct: 98 IELTEQAEEVATFYAKVLGTPFVELSEFNENFFKDFRSCLSVEQRLHFTSFDLCNFQKIH 157
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGR-G 126
Y ++ E R EE ++ YG C IDG + +I FRI+PPGL R G
Sbjct: 158 QYLEEQQEARSQQELEEDER-----------YGYCYIDGERHRINQFRIKPPGLCCPRKG 206
Query: 127 EHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVK 186
MG ++ RV EDI+INC + ++ P PPPGH+W++V HD V+WL SW + V G
Sbjct: 207 YSLTMGMIRPRVLPEDIMINCDEYAEPPAPPPGHRWRQVVHDRSVSWLYSWHDLVSGNTY 266
Query: 187 YIMLNPSSKLKGEKDWQ-----KYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALY 241
Y+ +++ K ++ + ETAR+L + + IR Y+ W S + +RQR+VALY
Sbjct: 267 YV----RARIDQSKRYRLPLRNQLETARRLQQHLPSIRREYRQLWSSDQWLVRQRSVALY 322
Query: 242 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEV 301
ID+LA+ +D +Q D V C LRVE++QLH GK VV + R Y V
Sbjct: 323 CIDQLAMTC---EDPEQPDKVTLCDLRVENLQLHPRLAGKKNVVRLQARKSNRQRVYRSV 379
Query: 302 PVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQ 361
V+ VF NL++FV K+ +D + + L T +LN+HL LM+GLT+ +F NAS L+Q+
Sbjct: 380 CVQPEVFYNLRVFVSGKEPNDLVLEELTTQLLNEHLEYLMDGLTSHIFCICNASQLLEQR 439
Query: 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
L E+ S ++LAYN+A + V C SN+++ V
Sbjct: 440 LKEVPR-KASLTVQLLAYNQALKEVHSFC---------------------SNRQRNVAPL 477
Query: 422 ERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPR 481
A +S +T + T RL + + T L + L YLDPR
Sbjct: 478 --------PAPKSFRLTRRNSTEEQRLLKSI-----------SLHTKPLVEATLIYLDPR 518
Query: 482 ISVTW 486
I+++W
Sbjct: 519 ITISW 523
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 67/118 (56%), Gaps = 12/118 (10%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ-----KYETARKLAKSINKIRENYQA 537
SV+WL SW + V G Y+ +++ K ++ + ETAR+L + + IR Y+
Sbjct: 250 SVSWLYSWHDLVSGNTYYV----RARIDQSKRYRLPLRNQLETARRLQQHLPSIRREYRQ 305
Query: 538 DWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKK 595
W S + +RQR+VALY ID+LA+ +D +Q D V C LRVE++QLH KK
Sbjct: 306 LWSSDQWLVRQRSVALYCIDQLAMTC---EDPEQPDKVTLCDLRVENLQLHPRLAGKK 360
>gi|381143901|gb|AFF58611.1| topoisomerase I, partial [Geocharidius sp. DRM-2012]
Length = 155
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/153 (79%), Positives = 139/153 (90%)
Query: 278 KDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHL 337
KDGK YVV FDFLGKDSIRYYNEVPVEKRVFKNLQLF+ENK+G+DDLFDRLNT ++NKHL
Sbjct: 1 KDGKEYVVVFDFLGKDSIRYYNEVPVEKRVFKNLQLFMENKEGADDLFDRLNTQIMNKHL 60
Query: 338 SELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVP 397
+ELMEGLTAKVFRTYNAS TLQQQL+EL +PD S AEKIL+YNRANRAVA+LCNHQRSVP
Sbjct: 61 NELMEGLTAKVFRTYNASWTLQQQLDELTNPDDSVAEKILSYNRANRAVAILCNHQRSVP 120
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKK 430
KSH+KSM LKEKI K++Q+ DA + +KDA+K
Sbjct: 121 KSHEKSMEKLKEKIQAKKEQISDAHKQVKDAQK 153
>gi|76155148|gb|AAX26392.2| SJCHGC05060 protein [Schistosoma japonicum]
Length = 330
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 122/173 (70%), Positives = 141/173 (81%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRK 65
K MKLS AEE+A FYARM++H+YTTKE FN NF DW K+M E+ER I LSKCDF++
Sbjct: 158 KPMKLSDHAEEVAGFYARMLDHDYTTKEVFNHNFFHDWVKTMNEEERRTIKSLSKCDFQE 217
Query: 66 MHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGR 125
MH YF++ SEERK +KEEK+KIK+EN I EYG C +DGHK++IGNFRIEPPGLFRGR
Sbjct: 218 MHQYFLKLSEERKNRTKEEKQKIKEENLQIQNEYGYCILDGHKQRIGNFRIEPPGLFRGR 277
Query: 126 GEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWT 178
G HPKMG LK+R+ ED+IINCSKDSKVP PP GHKWKEVRHDN VTWLA WT
Sbjct: 278 GNHPKMGMLKKRIMPEDVIINCSKDSKVPAPPKGHKWKEVRHDNSVTWLACWT 330
>gi|253987317|gb|ACT52163.1| topoisomerase I [Bursaphelenchus xylophilus]
Length = 177
Score = 254 bits (649), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 124/177 (70%), Positives = 148/177 (83%), Gaps = 1/177 (0%)
Query: 253 EKDEDQA-DTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNL 311
EKD D+A DTVGCCSLR EH+ L+EE DGK YVV FDFLGKDSIRYYN+VPVEK+VFKNL
Sbjct: 1 EKDTDEAADTVGCCSLRCEHVTLNEELDGKKYVVEFDFLGKDSIRYYNKVPVEKQVFKNL 60
Query: 312 QLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFS 371
++F E+K+ DDLFDRL+TS LN HL LM GLTAKVFRTYNASITLQ QL EL +P S
Sbjct: 61 KIFKEDKEPGDDLFDRLDTSTLNSHLRSLMPGLTAKVFRTYNASITLQNQLEELTNPKAS 120
Query: 372 EAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDA 428
EK+L+YNRANR VAVLCNHQR+VPK+H+KSM NL+ KI +K+ ++K+A+ AL+ A
Sbjct: 121 VNEKMLSYNRANRMVAVLCNHQRAVPKTHEKSMENLENKIKDKKTELKEAKLALEKA 177
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Query: 566 EKDEDQA-DTVGCCSLRVEHIQLHEEKDEKK 595
EKD D+A DTVGCCSLR EH+ L+EE D KK
Sbjct: 1 EKDTDEAADTVGCCSLRCEHVTLNEELDGKK 31
>gi|238589968|ref|XP_002392174.1| hypothetical protein MPER_08287 [Moniliophthora perniciosa FA553]
gi|215457866|gb|EEB93104.1| hypothetical protein MPER_08287 [Moniliophthora perniciosa FA553]
Length = 343
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 132/260 (50%), Positives = 168/260 (64%), Gaps = 3/260 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERA---VITDLSKC 61
GK + L ++EE+A FYA +IE ++ AFN NF +DW K + + TD KC
Sbjct: 8 GKVLNLPPESEEVAGFYAALIETDHAQDAAFNKNFFEDWLKVLQDHPPCNGIKATDFDKC 67
Query: 62 DFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGL 121
DFR M+ YF + ++KA S EKK+IK + + +Y +DG KEK+GNFR+EPPGL
Sbjct: 68 DFRPMYEYFEAEKAKKKATSAAEKKEIKKQKDEAEAKYTHRFLDGRKEKVGNFRVEPPGL 127
Query: 122 FRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENV 181
FRGRGEHPK G LK RV EDI +N KD+ P P KWK ++HDN VTWLA+ TEN+
Sbjct: 128 FRGRGEHPKKGSLKYRVCPEDIALNIGKDAPTPIPNIPGKWKAIQHDNTVTWLATRTENI 187
Query: 182 QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALY 241
KY+ L S LKG D K+E AR+L +++IR+NY D KSK M RQRA A
Sbjct: 188 NQSHKYVFLAAGSSLKGRSDMAKFEKARELKIHVDRIRQNYTVDLKSKVMAERQRATATC 247
Query: 242 FIDKLALRAGNEKDEDQADT 261
F+DKLALRAGNEK ED+ADT
Sbjct: 248 FVDKLALRAGNEKGEDEADT 267
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 64/92 (69%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+ TEN+ KY+ L S LKG D K+E AR+L +++IR+NY D KSK
Sbjct: 176 TVTWLATRTENINQSHKYVFLAAGSSLKGRSDMAKFEKARELKIHVDRIRQNYTVDLKSK 235
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADT 574
M RQRA A F+DKLALRAGNEK ED+ADT
Sbjct: 236 VMAERQRATATCFVDKLALRAGNEKGEDEADT 267
>gi|430732183|gb|AGA55492.1| topoisomerase, partial [Carabus problematicus]
Length = 189
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 129/189 (68%), Positives = 155/189 (82%), Gaps = 5/189 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TLQQQL+EL D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLQQQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER ++DA++ + ++ +K KK AL +L++QL++L VQETDK+E
Sbjct: 121 KIEQKKDSIMEMERQVQDAQRQAKRGSVKEKVVYDKKKKALDKLRDQLVRLNVQETDKDE 180
Query: 465 NKTIALGTS 473
NK+IALGTS
Sbjct: 181 NKSIALGTS 189
>gi|304273995|gb|ADM18435.1| topoisomerase I [Quediocafus insolitus]
Length = 205
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 124/179 (69%), Positives = 146/179 (81%), Gaps = 5/179 (2%)
Query: 313 LFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSE 372
LF+ENK DDLFDRLNT V+NKHL+ELME LTAKVFRTYNAS TLQQQL++L + D S
Sbjct: 1 LFMENKSPGDDLFDRLNTGVMNKHLNELMEALTAKVFRTYNASFTLQQQLDKLTNEDDSI 60
Query: 373 AEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK-- 430
+EKIL+YNRANRAVA+LCNHQR+VPK H KSM LKEKI K++ + DAER +KDA+K
Sbjct: 61 SEKILSYNRANRAVAILCNHQRAVPKGHQKSMEALKEKIQTKKESIADAERQVKDAQKDA 120
Query: 431 ---AGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ + K + DKKK L R++EQL KLE+QETDK+ENKTIALGTSKLNYLDPRISV W
Sbjct: 121 KRGSVKEKVVFDKKKKMLERMREQLAKLEIQETDKDENKTIALGTSKLNYLDPRISVAW 179
>gi|430732213|gb|AGA55507.1| topoisomerase, partial [Carabus amplipennis]
Length = 188
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 127/188 (67%), Positives = 154/188 (81%), Gaps = 5/188 (2%)
Query: 290 LGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVF 349
LGKDSIRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVF
Sbjct: 1 LGKDSIRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVF 60
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNAS TL QQL+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKE
Sbjct: 61 RTYNASWTLXQQLDELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKE 120
Query: 410 KISNKRKQVKDAERALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEE 464
KI K+ + + ER ++DA++ + ++ +K KK AL +L++QL++L VQETDK+E
Sbjct: 121 KIEQKKDSIMEMERQVQDAQRQAKRGSVKEKVVYDKKKKALDKLRDQLVRLNVQETDKDE 180
Query: 465 NKTIALGT 472
NK+IALGT
Sbjct: 181 NKSIALGT 188
>gi|397642179|gb|EJK75068.1| hypothetical protein THAOC_03220 [Thalassiosira oceanica]
Length = 455
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 167/480 (34%), Positives = 249/480 (51%), Gaps = 63/480 (13%)
Query: 158 PGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINK 217
PGH W E+RHD V WL +WTEN+ GQ KY+ L S KG+ D KY A KL +I+K
Sbjct: 5 PGHSWGELRHDPTVQWLCTWTENINGQNKYMQLAAQSSFKGKSDRSKYNKAAKLCGNIDK 64
Query: 218 IRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHE 276
IR++Y+ + ++K+ ++RQ A A++ ID+LALR G EKD D+ ADTVGCCSLRVEH++
Sbjct: 65 IRKDYKKNLRAKDSKLRQLATAMWVIDRLALRVGGEKDTDEEADTVGCCSLRVEHLKFDP 124
Query: 277 EKDGKPYV-VCFDFLGKDSIRYYNEV-----------PVEKRVFKNLQLFVENKKGSDDL 324
+G + + +FLGKDS+ + + + ++V+KN + F KK S+D+
Sbjct: 125 NNEGDDSLEIELEFLGKDSMLFKQTIDFGSALYTENNGMGEQVYKNFKTFCRGKKKSEDV 184
Query: 325 FDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPD----FSEAEKILAYN 380
F L LNKHL +M+GLTAKVFRTYNAS TLQ +L ++ + AEK+ YN
Sbjct: 185 FSDLTPPELNKHLKGIMDGLTAKVFRTYNASKTLQDELMKVEQSSGWRSLTAAEKVTKYN 244
Query: 381 RANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDK 440
ANR VA+LCNHQRSV K+ + ++ L K+ + Q K+ ++ LK + K
Sbjct: 245 DANREVAILCNHQRSVSKAQETALEGLGSKLQTLKDQKKELKKMLKTLTGGADKKI---- 300
Query: 441 KKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKY 500
RLK L T K E A+ +K + +A+ +V+ +
Sbjct: 301 ------RLKGDL-------TAKTEKVNQAIEKAKKKKEKAKTKEEKIAATEADVKAKEMK 347
Query: 501 IMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLA 560
L SK K + W K T ++ K I A W K I++ V +
Sbjct: 348 KAL-AESKFKSQHLWAKEPTKEQVMKRI--------AQWSDK---IKKMEVNI------- 388
Query: 561 LRAGNEKDEDQADTVGCCSLRVEHIQL------HEEKDEKKIYNKTQRAKFRWAIDMATA 614
KD+++ ++G L ++ E +K+++KT R KF W++ + A
Sbjct: 389 ----KHKDDNKEVSLGTSKLNYMDPRISVAWCKRNEVPIEKVFSKTLRDKFNWSMAVPPA 444
>gi|262089250|gb|ACY24472.1| DNA topoisomerase IB [uncultured crenarchaeote 29d5]
Length = 570
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 174/545 (31%), Positives = 292/545 (53%), Gaps = 60/545 (11%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ + L+++ EEI +A+ + Y F +NF+ D +K + + L K D
Sbjct: 38 GEILFLNREQEEIIYAWAKKKDTHYVKDAVFQSNFIDDLKKLFPHRFKL----LQKIDEI 93
Query: 65 KMHAYF--------VQKSEER--KAMSKEEKKKIKDENEAITKE----YGVCTIDGHKEK 110
M F ++++E+ K++ +EEK++I + ++ YG I+G + +
Sbjct: 94 DMTEAFNLVDKELKIKENEKLRIKSLPREEKRRISQGKKLEKEKLKSIYGKAKINGIEVE 153
Query: 111 IGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQ 170
+ N+ +EPPG+F GRG HP G+ K RV D+ +N +++ VP P WK + HD+
Sbjct: 154 VANWLVEPPGIFMGRGLHPLRGRWKPRVTPNDVTLNLGENASVPEGP----WKAIVHDHY 209
Query: 171 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKI-RENYQADWKSK 229
TWLASW E + G+ KY+ L+ SS L+ + D KY+ A+KL I I +E +K
Sbjct: 210 STWLASWIEILTGKRKYVWLHDSSYLRQDNDKAKYDIAKKLENYIRAIEKEIINQMLYAK 269
Query: 230 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDF 289
+ R+ A Y I KLA+R G+EKD D+ADT+G +LRVEH++ + D + F+F
Sbjct: 270 DTTKRKVATVCYLIYKLAMRVGDEKDPDEADTIGASTLRVEHLKFPKINDK--VQIEFNF 327
Query: 290 LGKDSIRYYNEVPVE----KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSEL----M 341
LGKDS+ + + + K +++NL F++ K SD++F+ + ++ +NK L + +
Sbjct: 328 LGKDSVPWQKTLEISSADTKALYENLLFFMKGKGQSDEIFEDITSTKVNKFLRSIDKDNL 387
Query: 342 EGLTAKVFRTYNASITLQQQLNEL---MDPDFSEAEKILAYNRANRAVAVLCNHQRSV-P 397
LTAKVFRTY A+ +++ L+ + + SE +KI AN A+ CNH++ + P
Sbjct: 388 PNLTAKVFRTYIATAIVKKHLSSPVLKVSKNESEFKKIYVAKIANLEAAITCNHKKGIDP 447
Query: 398 K--SHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLK--EQLL 453
K + KS ++ ++NK++++K + LK+ K KT L +LK +++
Sbjct: 448 KNPASKKSWEKFEQSLANKKEKIKQLKVELKEK-----------KWKTELQKLKKEQRIE 496
Query: 454 KLEVQETDKEENKTIALGTSKLNYLDPR--------ISVTWLASWTENVQGQVKYIMLNP 505
KLE Q ++E + LGTS NY+DPR + + W +T +Q + K+I
Sbjct: 497 KLEFQIRLQQETRDYNLGTSLRNYIDPRVFKSWCEFVDLDWTKIYTSTLQRKFKWIEQYS 556
Query: 506 SSKLK 510
S LK
Sbjct: 557 KSDLK 561
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKI-RENYQADWKSKE 543
TWLASW E + G+ KY+ L+ SS L+ + D KY+ A+KL I I +E +K+
Sbjct: 211 TWLASWIEILTGKRKYVWLHDSSYLRQDNDKAKYDIAKKLENYIRAIEKEIINQMLYAKD 270
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKI-YNKTQR 602
R+ A Y I KLA+R G+EKD D+ADT+G +LRVEH++ + D+ +I +N +
Sbjct: 271 TTKRKVATVCYLIYKLAMRVGDEKDPDEADTIGASTLRVEHLKFPKINDKVQIEFNFLGK 330
Query: 603 AKFRW--AIDMATAD 615
W +++++AD
Sbjct: 331 DSVPWQKTLEISSAD 345
>gi|262089332|gb|ACY24552.1| DNA topoisomerase IB [uncultured crenarchaeote 76h13]
Length = 570
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 171/540 (31%), Positives = 293/540 (54%), Gaps = 50/540 (9%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ + L+++ EEI +A+ + Y F TNF+ D +K + K R V + + D
Sbjct: 38 GEILFLNREQEEIIYSWAKKKDTHYVKDSVFQTNFIADLKKLLPAKFRTV-QRIDEIDMT 96
Query: 65 KMHAYFVQKSEER-------KAMSKEEKKKIKDENEAITKE----YGVCTIDGHKEKIGN 113
+ ++S+ + K++ +EEK++I E + ++ YG I+G + + N
Sbjct: 97 EAFNLVDKESKIKEDEKLRIKSLPREEKRRISQEKKLEKEKMKSIYGKAKINGIEVDVAN 156
Query: 114 FRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTW 173
+ +EPPG+F GRG HP G+ K RV D+ +N +++ VP P WK + HD+ TW
Sbjct: 157 WLVEPPGIFMGRGLHPLRGRWKPRVTPNDVTLNLGENASVPEGP----WKMIVHDHYSTW 212
Query: 174 LASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKI-RENYQADWKSKEMR 232
LASW E + G+ KY+ L+ SS L+ + D KY+TA+KL I I +E +KE
Sbjct: 213 LASWIEVLTGKRKYVWLHDSSFLRQDNDKAKYDTAKKLENYIRAIEKEIINQMLYAKETT 272
Query: 233 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGK 292
R+ A Y I KLA+R G+EKD D+ADT+G +LRVEH++ + D + F+FLGK
Sbjct: 273 KRKVATVCYLIYKLAMRVGDEKDPDEADTIGASTLRVEHLKFPKVNDN--VQIEFNFLGK 330
Query: 293 DSIRYYNEVPVE----KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSEL----MEGL 344
DS+ + + + K +++NL F++ K +D++F+ + ++ +NK L + + L
Sbjct: 331 DSVPWQKTLEISSADTKALYENLVFFMKGKSQTDEIFEDITSAKVNKFLRSIDKDNLPNL 390
Query: 345 TAKVFRTYNASITLQQQLNEL---MDPDFSEAEKILAYNRANRAVAVLCNHQRSV-PK-- 398
TAKVFRTY A+ +++ L+ + + SE +KI AN A+ CNH++ + PK
Sbjct: 391 TAKVFRTYIATAIVKKHLSAPVLKVSKNESEFKKIYVAKIANLEAAITCNHKKGIDPKNP 450
Query: 399 SHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQ 458
+ KS ++ ++NK++++K+ + LK+ K + + M + ++++ KLE Q
Sbjct: 451 ASKKSWEKFEQSLANKKEKIKELKLELKEKKWKTDLQKM---------KKEQRIEKLEFQ 501
Query: 459 ETDKEENKTIALGTSKLNYLDPR--------ISVTWLASWTENVQGQVKYIMLNPSSKLK 510
+++ + LGTS NY+DPR + + W +T +Q + K+I S LK
Sbjct: 502 IRLQQDTRDYNLGTSLRNYIDPRVFKSWCEYVDLDWTKIYTSTLQRKFKWIEQYSKSDLK 561
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKI-RENYQADWKSKE 543
TWLASW E + G+ KY+ L+ SS L+ + D KY+TA+KL I I +E +KE
Sbjct: 211 TWLASWIEVLTGKRKYVWLHDSSFLRQDNDKAKYDTAKKLENYIRAIEKEIINQMLYAKE 270
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKI-YNKTQR 602
R+ A Y I KLA+R G+EKD D+ADT+G +LRVEH++ + D +I +N +
Sbjct: 271 TTKRKVATVCYLIYKLAMRVGDEKDPDEADTIGASTLRVEHLKFPKVNDNVQIEFNFLGK 330
Query: 603 AKFRW--AIDMATAD 615
W +++++AD
Sbjct: 331 DSVPWQKTLEISSAD 345
>gi|320170030|gb|EFW46929.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 727
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 161/507 (31%), Positives = 264/507 (52%), Gaps = 47/507 (9%)
Query: 5 GKEMKLSQDA-EEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLS---- 59
G+ +++ D EE +A + F NF+ D K + + + + +
Sbjct: 198 GQPVRMLPDVVEEAVCLFAARLNSPLIVNPKFRLNFIADLNKLVDQHRHELASPVGVGLV 257
Query: 60 --------KCDFRKMHAYFVQKSEE-RKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEK 110
KCDF K+ A+ ++ E+ R A++ +EK K K E ++GV +DG +K
Sbjct: 258 LPKVLEYDKCDFTKIAAHLMRLREKKRSALTAKEKAK-KAERAL---KHGVVVVDGVPQK 313
Query: 111 IGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDN 169
G + +EPP +F GRG P G +K R+ D+ +N S+ + VPP P PG WK +
Sbjct: 314 FGPYVMEPPSIFLGRGNSPLTGHIKPRLSPADVTLNLSEGAPVPPSPVPGTNWKAIVSRP 373
Query: 170 QVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIREN-YQADWKS 228
W A+WT + G K I+ + S+KL E K++ RKL + I++IRE ++ +
Sbjct: 374 TALWSATWTCKISGLTKAIVPSRSAKLIQEATAAKFDQVRKLGEHISEIREQVFKCMRLA 433
Query: 229 KEMRIR-QRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCF 287
KE ++ Q A+ +Y +D+LALR G K D + G +L +H++L E P + F
Sbjct: 434 KEPTVQAQTALGVYLLDQLALRPGTSK-IDTDSSYGLFTLLPKHVKLVE-----PRTISF 487
Query: 288 DFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGS-DDLFDRLNTSVLNKHLSELMEGLTA 346
DF GKD ++Y N V V+ FK ++ + K +FD + ++ + + +A
Sbjct: 488 DFPGKDMVQYTNSVEVDPSAFKVFKMMMAAAKDPKTPVFDSSVGTRVDTFVKSFDKNFSA 547
Query: 347 KVFRTYNASITLQQQLNELMDPD---FSEAEKILAYNRANRAVAVLCNHQR---SVPKSH 400
+ FRTY+AS ++ L PD SE K A++RAN AVA LCNHQR + P
Sbjct: 548 RSFRTYSASSLFERSL-----PDCRKVSEVHKKAAFDRANVAVARLCNHQRITTTNPADD 602
Query: 401 DKSMGNLKEKISNKRKQVKDAERALKDAKKAGES-KAMTDKKKTALGRLKEQLLKLEVQE 459
K M + + ++KD LK+ K + A+ ++KK A ++++++LEV++
Sbjct: 603 RKKMASAMKAAKASLTKIKD---ELKETPKTTKKYSALVERKKKA----EDRIVQLEVKQ 655
Query: 460 TDKEENKTIALGTSKLNYLDPRISVTW 486
KE+++ ++L TSK+NY+DPRISV W
Sbjct: 656 ETKEDSRALSLNTSKVNYIDPRISVAW 682
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 481 RISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIREN-YQADW 539
R + W A+WT + G K I+ + S+KL E K++ RKL + I++IRE ++
Sbjct: 372 RPTALWSATWTCKISGLTKAIVPSRSAKLIQEATAAKFDQVRKLGEHISEIREQVFKCMR 431
Query: 540 KSKEMRIR-QRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEK 591
+KE ++ Q A+ +Y +D+LALR G K D + G +L +H++L E +
Sbjct: 432 LAKEPTVQAQTALGVYLLDQLALRPGTSK-IDTDSSYGLFTLLPKHVKLVEPR 483
>gi|430732227|gb|AGA55514.1| topoisomerase, partial [Carabus rugosus]
Length = 185
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 124/182 (68%), Positives = 147/182 (80%), Gaps = 5/182 (2%)
Query: 310 NLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPD 369
NLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL +
Sbjct: 1 NLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTNDG 60
Query: 370 FSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAK 429
+ AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKEKI K+ + + ER ++DA+
Sbjct: 61 DTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEKIEQKKDSIMEMERQVQDAQ 120
Query: 430 KAG-----ESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
+ + K + DKKK AL +LK+QL+KL VQETDK+ENK+IALGTSKLNYLDPRISV
Sbjct: 121 RQAKRGSVKEKVVYDKKKKALEKLKDQLVKLNVQETDKDENKSIALGTSKLNYLDPRISV 180
Query: 485 TW 486
W
Sbjct: 181 AW 182
>gi|430732185|gb|AGA55493.1| topoisomerase, partial [Carabus lusitanicus helluo]
Length = 180
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/180 (66%), Positives = 146/180 (81%), Gaps = 5/180 (2%)
Query: 295 IRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
IRYYNEVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNA
Sbjct: 1 IRYYNEVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNA 60
Query: 355 SITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNK 414
S TLQQQL+EL D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKEKI K
Sbjct: 61 SWTLQQQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEKIEQK 120
Query: 415 RKQVKDAERALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEENKTIA 469
+ + + ER ++DA++ + ++ +K KK AL +L++QL++L VQETDK+ENK+IA
Sbjct: 121 KDSIMEMERQVQDAQRQAKRGSVKEKVVYDKKKKALDKLRDQLVRLNVQETDKDENKSIA 180
>gi|386875253|ref|ZP_10117437.1| eukaryotic DNA topoisomerase I, catalytic core, partial [Candidatus
Nitrosopumilus salaria BD31]
gi|386806938|gb|EIJ66373.1| eukaryotic DNA topoisomerase I, catalytic core, partial [Candidatus
Nitrosopumilus salaria BD31]
Length = 311
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 123/293 (41%), Positives = 185/293 (63%), Gaps = 17/293 (5%)
Query: 77 RKAMSKEEKKKI----KDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMG 132
R+ M+KEEKK + K+ E + +YG+ +DG + ++GN+ EPPG+F GRGEHP G
Sbjct: 20 REMMTKEEKKSLAAKRKELREKLKAKYGIAIMDGKEVEVGNYMAEPPGIFIGRGEHPLRG 79
Query: 133 KLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNP 192
K K RV +D+ +N K++KVP W ++ HD WLASW + + + KY+ L
Sbjct: 80 KWKPRVTTKDVTLNLGKEAKVPE----GNWGKIIHDKDSMWLASWMDFLTQKRKYVWLAD 135
Query: 193 SSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGN 252
++ LK ++D +KYE A KLAK I+KI++ D KS + ++ + A A Y I + A+R G+
Sbjct: 136 TAGLKQDRDKEKYEKAVKLAKEIDKIKDRIVKDMKSNDPKMSRIATACYLIYRTAMRVGD 195
Query: 253 EKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE---KRVFK 309
EKD D+ADTVG +LR EHI++ P + FDFLGKDS+R+ +V E K+ +
Sbjct: 196 EKDPDEADTVGATTLRKEHIKI------TPNAIEFDFLGKDSVRWQEKVIAEGHDKQFQE 249
Query: 310 NLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
NL+ VENKK D++FD + + +N + S +++GLTAKVFRTY A+ ++ L
Sbjct: 250 NLKKLVENKKPKDEIFDDITSRHVNAYYSSIVKGLTAKVFRTYLATTVVKDXL 302
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 69/102 (67%)
Query: 486 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 545
WLASW + + + KY+ L ++ LK ++D +KYE A KLAK I+KI++ D KS + +
Sbjct: 116 WLASWMDFLTQKRKYVWLADTAGLKQDRDKEKYEKAVKLAKEIDKIKDRIVKDMKSNDPK 175
Query: 546 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+ + A A Y I + A+R G+EKD D+ADTVG +LR EHI++
Sbjct: 176 MSRIATACYLIYRTAMRVGDEKDPDEADTVGATTLRKEHIKI 217
>gi|430732209|gb|AGA55505.1| topoisomerase, partial [Carabus problematicus]
Length = 180
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 120/180 (66%), Positives = 146/180 (81%), Gaps = 5/180 (2%)
Query: 300 EVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
EVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQ
Sbjct: 1 EVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQ 60
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVK 419
QQL+EL D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKEKI K+ +
Sbjct: 61 QQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEKIEQKKDSIM 120
Query: 420 DAERALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEENKTIALGTSK 474
+ ER ++DA++ + ++ +K KK AL +L++QL++L VQETDK+ENK+IALGTSK
Sbjct: 121 EMERQVQDAQRQAKRGSVKEKVVYDKKKKALDKLRDQLVRLNVQETDKDENKSIALGTSK 180
>gi|430732181|gb|AGA55491.1| topoisomerase, partial [Carabus macrocephalus cantabricus]
Length = 179
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 119/179 (66%), Positives = 145/179 (81%), Gaps = 5/179 (2%)
Query: 300 EVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
EVPVEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQ
Sbjct: 1 EVPVEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQ 60
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVK 419
QQL+EL D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKEKI K+ +
Sbjct: 61 QQLDELTSADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEKIEQKKDSIM 120
Query: 420 DAERALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEENKTIALGTS 473
+ ER ++DA++ + ++ +K KK AL +L++QL++L VQETDK+ENK+IALGTS
Sbjct: 121 EMERQVQDAQRQAKRGSVKEKVVYDKKKKALDKLRDQLVRLNVQETDKDENKSIALGTS 179
>gi|195117043|ref|XP_002003060.1| GI24443 [Drosophila mojavensis]
gi|193913635|gb|EDW12502.1| GI24443 [Drosophila mojavensis]
Length = 555
Score = 221 bits (563), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 151/482 (31%), Positives = 238/482 (49%), Gaps = 58/482 (12%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
++L++ AEE+ATFYA++++ + FN NF ++R ++E++R IT C+F +
Sbjct: 95 VELTEQAEEVATFYAKLMKTAFVQMREFNQNFFNEFRSCLSEEQRRYITCFELCNFCDIS 154
Query: 68 AYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGR-G 126
Y + ++EK++I +EN K YG C +DG +I FRI PGL R G
Sbjct: 155 QYL-------ECQREDEKERIAEEN----KLYGYCLVDGESRRITQFRISRPGLCCPRHG 203
Query: 127 EHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVK 186
MG ++ RV ED++INC ++ + P PP GH W V HD V W+ +W + V G +
Sbjct: 204 FSTTMGTIRPRVLPEDVVINCDENEEPPAPPCGHLWAAVVHDRTVRWVYAWNDIVTGCMH 263
Query: 187 YIML-NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDK 245
+ N SS+ +TAR+L + ++ IR YQ S+ +RQR+VALY ID+
Sbjct: 264 HAYPRNESSRRSRPPRRDLLDTARRLQQHLHHIRNEYQTLQSSENWLVRQRSVALYCIDQ 323
Query: 246 LALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS-IRYYNEVPVE 304
LA+ E+ + G C V++I+L G+ V+ +D R Y V
Sbjct: 324 LAMSCDAEEVPAETTVCGLC---VQNIKLCPRLGGQRNVLQLLAGNRDCRQREYKRSSVP 380
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
+F NL +F+ K+ + +F+ LNT LN+HL LM+GLT+ VFR NAS L+ +L +
Sbjct: 381 PGIFYNLSVFICGKQPDELVFEELNTETLNEHLDFLMDGLTSSVFRICNASRLLEDRLIK 440
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
+ + E++ AYN+A +AV + C R + D A
Sbjct: 441 I-PLSATLCEQLTAYNKALKAVHMHCGF----------------------RHRRIDPLPA 477
Query: 425 LKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
LK + A +K ++ RL +T L + YLDPRI++
Sbjct: 478 LKRPCAIPRNSAAEQRKLRSI-RL-----------------QTKPLVEATFFYLDPRITI 519
Query: 485 TW 486
+W
Sbjct: 520 SW 521
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 483 SVTWLASWTENVQGQVKYIML-NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+V W+ +W + V G + + N SS+ +TAR+L + ++ IR YQ S
Sbjct: 247 TVRWVYAWNDIVTGCMHHAYPRNESSRRSRPPRRDLLDTARRLQQHLHHIRNEYQTLQSS 306
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+ +RQR+VALY ID+LA+ E+ + G C V++I+L
Sbjct: 307 ENWLVRQRSVALYCIDQLAMSCDAEEVPAETTVCGLC---VQNIKL 349
>gi|393794779|ref|ZP_10378143.1| 2-alkenal reductase, partial [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 404
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 220/387 (56%), Gaps = 34/387 (8%)
Query: 127 EHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVK 186
+HP G+ K R+ A+D+ +N K++KVP W ++ HDN WLA WT+ + + K
Sbjct: 1 DHPLRGRWKPRITAKDVTLNLGKEAKVPEG----NWGKIVHDNDSMWLAGWTDYLTEKRK 56
Query: 187 YIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKL 246
Y+ L ++ LK ++D KYE A KL+K I KI+E D K+K+ +I + A Y I +
Sbjct: 57 YVWLADTAGLKQDRDKAKYEKAVKLSKEIEKIKERIVKDMKNKDPKISRIATVCYLIYRT 116
Query: 247 ALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE-- 304
A+R G+EKD D+ADTVG +LR EHI + ++ + FDFLGKDS+R+ V E
Sbjct: 117 AMRVGDEKDPDEADTVGATTLRKEHINITDD------AIEFDFLGKDSVRWQETVKAEGN 170
Query: 305 -KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
K+ +NL+ ++NKK D++F+ + + +N + S ++ GLTAKVFRTY A+ ++ L
Sbjct: 171 DKQFQENLKKLIQNKKPKDEIFEDITSRHVNAYYSSIVSGLTAKVFRTYLATTMVKNYLK 230
Query: 364 ELMD-PDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
E + + EK+ AN A++CNH+R++PK+++ ++ N ++ + N K +
Sbjct: 231 EHDNVKSKTPNEKLYHAKLANLEAAIMCNHKRTIPKTYEDTLENKRQTLKNISKD-QPWT 289
Query: 423 RALKDAKKAGESKAMTDKK---------------KTALGRLKEQLLKLEVQETDKEENKT 467
+ L+ KKA +A TD + K + KE++ KL++Q E+ K
Sbjct: 290 KTLEALKKAESMEAKTDAQKKNKAKKIKTLNEQIKKQKEKHKERVEKLQLQIDLSEKTKD 349
Query: 468 IALGTSKLNYLDPRISVTWLASWTENV 494
LGTS NY+DPRI +WT+ V
Sbjct: 350 YNLGTSLRNYIDPRI----FKAWTDEV 372
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 68/105 (64%)
Query: 486 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 545
WLA WT+ + + KY+ L ++ LK ++D KYE A KL+K I KI+E D K+K+ +
Sbjct: 43 WLAGWTDYLTEKRKYVWLADTAGLKQDRDKAKYEKAVKLSKEIEKIKERIVKDMKNKDPK 102
Query: 546 IRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
I + A Y I + A+R G+EKD D+ADTVG +LR EHI + ++
Sbjct: 103 ISRIATVCYLIYRTAMRVGDEKDPDEADTVGATTLRKEHINITDD 147
>gi|332811202|ref|XP_003308650.1| PREDICTED: DNA topoisomerase 1-like [Pan troglodytes]
Length = 211
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/179 (63%), Positives = 136/179 (75%), Gaps = 6/179 (3%)
Query: 318 KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKIL 377
K+ DDLFDRLNT +LNKHL +LME LTAKVF TYNASITLQQQL EL D + KIL
Sbjct: 4 KQPKDDLFDRLNTGILNKHLQDLMESLTAKVFHTYNASITLQQQLEELTALDENIPAKIL 63
Query: 378 AYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAK------KA 431
+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R LK AK K
Sbjct: 64 SYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVRKD 123
Query: 432 GESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNYLDP+I+V W W
Sbjct: 124 AKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPKITVPWCKKW 182
Score = 39.3 bits (90), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAID A D+ F
Sbjct: 188 KIYNKTQREKFAWAIDTADKDYEF 211
>gi|430732203|gb|AGA55502.1| topoisomerase, partial [Carabus lusitanicus latus]
Length = 175
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 115/175 (65%), Positives = 142/175 (81%), Gaps = 5/175 (2%)
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VEKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL
Sbjct: 1 VEKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQL 60
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
+EL + D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKEKI K+ + + E
Sbjct: 61 DELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEKIEQKKDSIMEME 120
Query: 423 RALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEENKTIALGT 472
R ++DA++ + ++ +K KK AL +L++QL++L VQETDK+ENK+IALGT
Sbjct: 121 RQVQDAQRQAKRGSVKEKVVYDKKKKALDKLRDQLVRLNVQETDKDENKSIALGT 175
>gi|397508523|ref|XP_003824702.1| PREDICTED: DNA topoisomerase 1-like [Pan paniscus]
Length = 211
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/182 (61%), Positives = 137/182 (75%), Gaps = 6/182 (3%)
Query: 315 VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAE 374
++ K+ DDLFDRL+T +LNKHL +LME LTAKVF TYNASITLQQQL EL D +
Sbjct: 1 MKKKQPKDDLFDRLSTGILNKHLQDLMESLTAKVFHTYNASITLQQQLEELTALDENIPA 60
Query: 375 KILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAK----- 429
KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R LK AK
Sbjct: 61 KILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKV 120
Query: 430 -KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLA 488
K ++K + + KK A+ RL+EQL+KLEVQ TD EENK IALGTSKLNYLDP+I+V W
Sbjct: 121 MKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDPEENKQIALGTSKLNYLDPKITVPWCK 180
Query: 489 SW 490
W
Sbjct: 181 KW 182
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAID A D+ F
Sbjct: 188 KIYNKTQREKFAWAIDTADKDYEF 211
>gi|221057147|ref|XP_002259711.1| topoisomerase I [Plasmodium knowlesi strain H]
gi|193809783|emb|CAQ40487.1| topoisomerase I, putative [Plasmodium knowlesi strain H]
Length = 924
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 175/286 (61%), Gaps = 17/286 (5%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV------------I 55
++L++ AEE+AT++ +I +Y TKE F NF + + ++ EK+ + I
Sbjct: 218 LELNEKAEELATYWCSVIGSDYCTKEKFILNFFRTFICTL-EKDNIIRQENENKLKKGDI 276
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
++ DF + + V+ EE+ +KEEK++ K + +D +EKI + +
Sbjct: 277 SNFQFIDFMPIKDHLVKLREEKLNRTKEEKEEEKKLRSEKELPHTYALVDWIREKISSNK 336
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVP---PPPPGHKWKEVRHDNQVT 172
EPPGLFRGRGEHPK G LK+R+ ED++IN SKD+ VP GH W ++ HDN+VT
Sbjct: 337 AEPPGLFRGRGEHPKQGLLKKRIFPEDVVINISKDAPVPRLYGDMCGHSWGDIYHDNKVT 396
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA + +++ Q+KY L+ SK KG KD+ KYE ARKL ++KIRE+Y+ KSK +
Sbjct: 397 WLAYYKDSINDQLKYTFLSAQSKFKGYKDFLKYENARKLKSCVHKIREDYKHKMKSKNIL 456
Query: 233 IRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEE 277
+Q A+Y ID LALR G EKD D +ADTVGCCSLRVEH+ E
Sbjct: 457 EKQLGTAVYLIDFLALRVGGEKDIDEEADTVGCCSLRVEHVSFSHE 502
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA + +++ Q+KY L+ SK KG KD+ KYE ARKL ++KIRE+Y+ KSK
Sbjct: 395 VTWLAYYKDSINDQLKYTFLSAQSKFKGYKDFLKYENARKLKSCVHKIREDYKHKMKSKN 454
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEE 590
+ +Q A+Y ID LALR G EKD D +ADTVGCCSLRVEH+ E
Sbjct: 455 ILEKQLGTAVYLIDFLALRVGGEKDIDEEADTVGCCSLRVEHVSFSHE 502
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 65/95 (68%)
Query: 285 VCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGL 344
+ DFLGKDSIRY+N V + K+ + N+ +F +NK + +FD++N S LN +L E+M L
Sbjct: 573 ITLDFLGKDSIRYFNTVLLNKQAYINMIIFCKNKHKDEGVFDQINCSKLNDYLKEIMPTL 632
Query: 345 TAKVFRTYNASITLQQQLNELMDPDFSEAEKILAY 379
+AKVFRTYNASITL QQL + + + +LAY
Sbjct: 633 SAKVFRTYNASITLDQQLKRIKEIRGKPTDPLLAY 667
>gi|430732189|gb|AGA55495.1| topoisomerase, partial [Carabus riffensis]
Length = 174
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 114/174 (65%), Positives = 141/174 (81%), Gaps = 5/174 (2%)
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+
Sbjct: 1 EKRVFKNLQLFMENKSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLD 60
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL + D + AEKIL+YNRANRAVA+LCNHQRSVPK H KSM LKEKI K+ + + ER
Sbjct: 61 ELTNADDTVAEKILSYNRANRAVAILCNHQRSVPKGHAKSMEKLKEKIEQKKDTIMEMER 120
Query: 424 ALKDAKKAGESKAMTDK-----KKTALGRLKEQLLKLEVQETDKEENKTIALGT 472
++DA++ + ++ +K KK AL +L++QL++L VQETDK+ENK+IALGT
Sbjct: 121 QVQDAQRQAKRGSVKEKVVYDKKKKALDKLRDQLVRLNVQETDKDENKSIALGT 174
>gi|389584228|dbj|GAB66961.1| topoisomerase I [Plasmodium cynomolgi strain B]
Length = 975
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 174/286 (60%), Gaps = 17/286 (5%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV------------I 55
++L++ AEE+AT++ +I +Y TKE F NF + + ++ EK+ + I
Sbjct: 218 LQLNEKAEELATYWCSVIGSDYCTKEKFILNFFRTFIYTL-EKDNIIRQENESKLKKGDI 276
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
++ DF + + V+ EE+ +KEEK++ K Y +D +EKI + +
Sbjct: 277 SNFKFIDFMPIKDHLVKLREEKLNRTKEEKEEEKKLRSEKELPYTYALVDWIREKISSNK 336
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVP---PPPPGHKWKEVRHDNQVT 172
EPPGLFRGRGEHPK G LK+R+ ED++IN SKD+ VP GH W + HDN+VT
Sbjct: 337 AEPPGLFRGRGEHPKQGLLKKRIFPEDVVINISKDAPVPRLYDDMCGHCWGDTYHDNKVT 396
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA + +++ Q+KY L+ SK KG KD+ KYE ARKL ++KIRE+Y+ +SK +
Sbjct: 397 WLAYYKDSINDQLKYTFLSAQSKFKGYKDFLKYENARKLKSCVHKIREDYRHKMRSKSIL 456
Query: 233 IRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEE 277
+Q A+Y ID LALR G EKD D +ADTVGCCSLRVEH+ E
Sbjct: 457 DKQLGTAVYLIDFLALRVGGEKDIDEEADTVGCCSLRVEHVSFSHE 502
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA + +++ Q+KY L+ SK KG KD+ KYE ARKL ++KIRE+Y+ +SK
Sbjct: 395 VTWLAYYKDSINDQLKYTFLSAQSKFKGYKDFLKYENARKLKSCVHKIREDYRHKMRSKS 454
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEE 590
+ +Q A+Y ID LALR G EKD D +ADTVGCCSLRVEH+ E
Sbjct: 455 ILDKQLGTAVYLIDFLALRVGGEKDIDEEADTVGCCSLRVEHVSFSHE 502
Score = 95.5 bits (236), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 65/94 (69%)
Query: 285 VCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGL 344
+ DFLGKDSIRY+N V ++K+ + N+ +F +NK + +FD++N S LN +L E+M L
Sbjct: 598 ITLDFLGKDSIRYFNTVMLDKQAYINMIIFCKNKHKDEGVFDQINCSKLNDYLKEIMPTL 657
Query: 345 TAKVFRTYNASITLQQQLNELMDPDFSEAEKILA 378
+AKVFRTYNASITL QQL + + + +LA
Sbjct: 658 SAKVFRTYNASITLDQQLKRIKEIRGKPTDPLLA 691
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 24/148 (16%)
Query: 363 NELMDPDFSEAEKILAY-NRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
N ++ D S +++ + N ANR VA+LCNHQRSVPK HD +M +K++I + +K+
Sbjct: 795 NSPIEVDVSNVNELINFFNNANREVAILCNHQRSVPKQHDTAMSKIKKQIEIYSEDIKEY 854
Query: 422 ERALKDAKKAGESKAMTDKKKTAL--GRLKEQLLKLEVQETD------------------ 461
++ L+ KK ++ T K G L+ +K ++E
Sbjct: 855 KKYLQYLKKGTNEQSFTFVSKVVALDGSLRPNKVKENMKEESCKKKLIALIKKVEQLKHQ 914
Query: 462 ---KEENKTIALGTSKLNYLDPRISVTW 486
+++NKTIALGTSK+NY+DPRI+V +
Sbjct: 915 MKVRDDNKTIALGTSKINYMDPRITVAF 942
>gi|156094480|ref|XP_001613277.1| topoisomerase I [Plasmodium vivax Sal-1]
gi|148802151|gb|EDL43550.1| topoisomerase I, putative [Plasmodium vivax]
Length = 931
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 174/286 (60%), Gaps = 17/286 (5%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV------------I 55
++L++ AEE+AT++ +I +Y TKE F NF + + ++ EK+ + I
Sbjct: 218 LQLNEKAEELATYWCSVIGSDYCTKEKFILNFFRTFICTL-EKDNIIRQENESKLKKGDI 276
Query: 56 TDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFR 115
++ DF + + V+ EE+ +KEEK++ K Y +D +EKI + +
Sbjct: 277 SNFKFIDFMPIKDHLVKLREEKLNRTKEEKEEEKKLRSEKELPYTYALVDWIREKISSNK 336
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVP---PPPPGHKWKEVRHDNQVT 172
EPPGLFRGRGEHPK G LK+R+ ED++IN SKD+ VP GH W + HDN+VT
Sbjct: 337 AEPPGLFRGRGEHPKQGLLKKRIFPEDVVINISKDAPVPRLYDDMCGHCWGDTYHDNKVT 396
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA + +++ Q+KY L+ SK KG KD+ KYE ARKL ++KIRE+Y+ ++K +
Sbjct: 397 WLAYYKDSINDQLKYTFLSAQSKFKGYKDFLKYENARKLKSCVHKIREDYRHKMRNKSIL 456
Query: 233 IRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEE 277
+Q A+Y ID LALR G EKD D +ADTVGCCSLRVEH+ E
Sbjct: 457 DKQLGTAVYLIDFLALRVGGEKDIDEEADTVGCCSLRVEHVSFSHE 502
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA + +++ Q+KY L+ SK KG KD+ KYE ARKL ++KIRE+Y+ ++K
Sbjct: 395 VTWLAYYKDSINDQLKYTFLSAQSKFKGYKDFLKYENARKLKSCVHKIREDYRHKMRNKS 454
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHEE 590
+ +Q A+Y ID LALR G EKD D +ADTVGCCSLRVEH+ E
Sbjct: 455 ILDKQLGTAVYLIDFLALRVGGEKDIDEEADTVGCCSLRVEHVSFSHE 502
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 60/81 (74%)
Query: 285 VCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGL 344
+ FDFLGKDSIRY+N V ++K+ + N+ +F + K + +FD++N S LN +L E+M L
Sbjct: 582 LTFDFLGKDSIRYFNTVKLDKQAYINMIIFCKKKHKDEGVFDQINCSKLNDYLKEIMPTL 641
Query: 345 TAKVFRTYNASITLQQQLNEL 365
+AKVFRTYNASITL QQL +
Sbjct: 642 SAKVFRTYNASITLDQQLKRI 662
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 24/148 (16%)
Query: 363 NELMDPDFSEAEKILAY-NRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
N ++ D S +++ + N ANR VA+LCNHQRSVPK HD +M +K++I + +K+
Sbjct: 752 NSPIEVDVSNVNELINFFNNANREVAILCNHQRSVPKQHDSAMSKIKKQIEIYSEDIKEY 811
Query: 422 ERALKDAKKAGESKAMTDKKKTAL--GRLKEQLLKLEVQETD------------------ 461
++ L+ KK ++ T K G L+ +K ++E
Sbjct: 812 KKYLQYLKKGMNEQSFTFVSKVVALDGSLRPNKVKENMKEESCKKKLIALIKKVEQLKHQ 871
Query: 462 ---KEENKTIALGTSKLNYLDPRISVTW 486
+++NKTIALGTSK+NY+DPRI+V +
Sbjct: 872 MKVRDDNKTIALGTSKINYMDPRITVAF 899
>gi|145501721|ref|XP_001436841.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403985|emb|CAK69444.1| unnamed protein product [Paramecium tetraurelia]
Length = 725
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/273 (42%), Positives = 161/273 (58%), Gaps = 9/273 (3%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+++ EE+ T++A+ I Y KE + NF M K L K DF
Sbjct: 70 GKLITLTEEQEELCTYWAQSIGSPYENKEIYRKNF----ESLMQTKFEGF--QLDKADFT 123
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
K+ + Q+ R S E+KK+ K E + YG +DG E++GN+ +E P LF+G
Sbjct: 124 KIREHLEQQRLLRLNKSDEQKKQEKLERDQRELFYGYALVDGCLERVGNYTLEQPTLFKG 183
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENV-- 181
RGEHPK G LK R+ E++ +N S + VP PGH W ++ H N VTWL S+ ++
Sbjct: 184 RGEHPKAGLLKARIFPEELTVNLSTQAPVPQCKLPGHSWGKIVHRNDVTWLFSYVDSSIR 243
Query: 182 QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALY 241
+ KY+ +S+ K D +KYE AR+L I++IRENY +S ++ RQ A Y
Sbjct: 244 KDNHKYVQFAATSRFKQMNDKRKYEKARRLKNQIDQIRENYTKKLQSDSIKERQLGTATY 303
Query: 242 FIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 274
IDKLALR GN+KDED+ADTVGCCSLRVEHI+L
Sbjct: 304 LIDKLALRVGNDKDEDEADTVGCCSLRVEHIKL 336
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 73/109 (66%), Gaps = 2/109 (1%)
Query: 481 RISVTWLASWTENV--QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQAD 538
R VTWL S+ ++ + KY+ +S+ K D +KYE AR+L I++IRENY
Sbjct: 228 RNDVTWLFSYVDSSIRKDNHKYVQFAATSRFKQMNDKRKYEKARRLKNQIDQIRENYTKK 287
Query: 539 WKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+S ++ RQ A Y IDKLALR GN+KDED+ADTVGCCSLRVEHI+L
Sbjct: 288 LQSDSIKERQLGTATYLIDKLALRVGNDKDEDEADTVGCCSLRVEHIKL 336
>gi|440911948|gb|ELR61565.1| DNA topoisomerase I, mitochondrial [Bos grunniens mutus]
Length = 1021
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 152/416 (36%), Positives = 189/416 (45%), Gaps = 116/416 (27%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
+ +S AEE+ATFY + ++HEYT KE F NF DWRK MT +ER VI L +CDF ++H
Sbjct: 361 LNVSLAAEEVATFYGKKLDHEYT-KEVFQNNFFSDWRKEMTAEERRVIKHLDRCDFTEIH 419
Query: 68 AYF---------VQKSE----ERKAMSKEEKKKIKDENEAITKE---------------- 98
VQ E E A + + KK E + +
Sbjct: 420 RLCGQDCFPEGPVQGGEAADFELCAPNLDVFKKCCVHLEHVEQRPCRRHGVLLMQKLKEE 479
Query: 99 -------YGVCTIDGHKEKIGNFRIEP--PGLFRGRGEHPKM---------------GKL 134
+G +DGH+EK G+F+ EP P L G HP+ G
Sbjct: 480 EEKLQQEFGCSILDGHREKTGSFKTEPLLPWLAT-HGIHPRGSSEGACHGQELRARGGGT 538
Query: 135 KRRVQAEDIIINCSKDSKVPPPPPGHK-----WKEVRHDNQVTWLASWTENVQGQVKYIM 189
+ R+ D D + P + WK+V + V WLA+W ENVQ +KY+
Sbjct: 539 RERLGQRD---GSETDLALAVPTAVGEEGVWLWKDVGCNCTVMWLAAWMENVQNFIKYVT 595
Query: 190 LNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALR 249
LNP SKLK Y S EMR RQRAVALYFIDK
Sbjct: 596 LNPGSKLK------------------------YWTAGTSPEMRTRQRAVALYFIDK---- 627
Query: 250 AGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFK 309
E+ GCCSLRVEH QL+ E G P VV FDFLGKDSIR YN V VEK
Sbjct: 628 --TGNGEEGGGLGGCCSLRVEHFQLYPEASGSPDVVEFDFLGKDSIRSYNRVLVEKL--- 682
Query: 310 NLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNEL 365
T+ LN+HL + +GLTA+VFRTYN S+ LQ QL L
Sbjct: 683 --------------------TASLNRHLQDPTDGLTARVFRTYNTSVMLQGQLQAL 718
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 69/148 (46%), Gaps = 33/148 (22%)
Query: 446 GRLKEQLLKLEVQETDKEENKTIALGTSKLNY---LDPRISVTWLASWTENVQGQVKYIM 502
G +E+L + + ETD A+G + + +V WLA+W ENVQ +KY+
Sbjct: 536 GGTRERLGQRDGSETDLALAVPTAVGEEGVWLWKDVGCNCTVMWLAAWMENVQNFIKYVT 595
Query: 503 LNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALR 562
LNP SKLK Y S EMR RQRAVALYFIDK
Sbjct: 596 LNPGSKLK------------------------YWTAGTSPEMRTRQRAVALYFIDK---- 627
Query: 563 AGNEKDEDQADTVGCCSLRVEHIQLHEE 590
E+ GCCSLRVEH QL+ E
Sbjct: 628 --TGNGEEGGGLGGCCSLRVEHFQLYPE 653
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 454 KLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
++ Q TDK+E+K +ALGTS+L LDPRI VTW
Sbjct: 931 RVSTQATDKKESKQVALGTSELICLDPRIGVTW 963
>gi|253723032|pdb|1OIS|A Chain A, Yeast Dna Topoisomerase I, N-Terminal Fragment
Length = 223
Score = 198 bits (503), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 89/190 (46%), Positives = 124/190 (65%), Gaps = 4/190 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLSK 60
GK + L AEE+A F+A ++E ++ F NF D+ + + E + I + S+
Sbjct: 32 GKPVDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSR 91
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KM YF + E++K ++ +EKK+I+ E E ++Y C +DG +E++GNF++EPP
Sbjct: 92 CDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPD 151
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV EDI++N SKD+ VPP P GHKW E+RHDN V WLA W EN
Sbjct: 152 LFRGRGAHPKTGKLKRRVNPEDIVLNLSKDAPVPPAPEGHKWGEIRHDNTVQWLAMWREN 211
Query: 181 VQGQVKYIML 190
+ KY+ L
Sbjct: 212 IFNSFKYVRL 221
>gi|334188421|ref|NP_001190544.1| DNA topoisomerase 1 [Arabidopsis thaliana]
gi|332009231|gb|AED96614.1| DNA topoisomerase 1 [Arabidopsis thaliana]
Length = 564
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 151/240 (62%), Gaps = 18/240 (7%)
Query: 258 QADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVEN 317
+ADTVGCC+L+V +++ P + FDFLGKDSI+Y N V VE V+K + F
Sbjct: 297 EADTVGCCTLKVGNVECIP-----PNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAG 351
Query: 318 KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN-ELMDPDFSEAEKI 376
K +DDLFD L+TS LN HL EL+ GLTAKVFRTYNASITL + L+ E D D + +KI
Sbjct: 352 KSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVT--QKI 409
Query: 377 LAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKA 436
+ Y +AN+ VA++CNHQR+V K+H + L +I ++ +K+ + L AKK
Sbjct: 410 VVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPLE 469
Query: 437 MTDKKKTAL-------GRLKEQLLKLEVQETD---KEENKTIALGTSKLNYLDPRISVTW 486
+D KK ++ +Q K+E E D KE+ KT+ALGTSK+NYLDPRI+V W
Sbjct: 470 GSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVAW 529
>gi|62321045|dbj|BAD94115.1| DNA topoisomerase I [Arabidopsis thaliana]
Length = 270
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 153/242 (63%), Gaps = 18/242 (7%)
Query: 256 EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFV 315
+++ADTVGCC+L+V +++ P + FDFLGKDSI+Y N V VE V+K + F
Sbjct: 1 DNEADTVGCCTLKVGNVECI-----PPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQ 55
Query: 316 ENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN-ELMDPDFSEAE 374
K +DDLFD L+TS LN HL EL+ GLTAKVFRTYNASITL + L+ E D D + +
Sbjct: 56 AGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVT--Q 113
Query: 375 KILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGES 434
KI+ Y +AN+ VA++CNHQR+V K+H + L +I ++ +K+ + L AKK
Sbjct: 114 KIVVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPP 173
Query: 435 KAMTDKKKTAL-------GRLKEQLLKLEVQETD---KEENKTIALGTSKLNYLDPRISV 484
+D KK ++ +Q K+E E D KE+ KT+ALGTSK+NYLDPRI+V
Sbjct: 174 LEGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITV 233
Query: 485 TW 486
W
Sbjct: 234 AW 235
>gi|343957943|emb|CBY93680.1| putative top1 protein, partial [Glomus diaphanum]
Length = 357
Score = 191 bits (485), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 156/440 (35%), Positives = 218/440 (49%), Gaps = 111/440 (25%)
Query: 193 SSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGN 252
+S LKG+ D++K+E AR+L + KIR +Y D +K IRQRA A+YFID+LALRAGN
Sbjct: 2 NSTLKGQSDFKKFEKARELKDIVAKIRNDYNKDMTNKVTAIRQRATAMYFIDRLALRAGN 61
Query: 253 EKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNL 311
EK E ++ADTVGCCSLR EHI+L V FDFLG +NL
Sbjct: 62 EKKEGEEADTVGCCSLRFEHIRLEA-----GNTVHFDFLGT----------------RNL 100
Query: 312 QLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFS 371
D LFDR T LNKHLS M+GLTAKVFRTYNAS T Q+QL S
Sbjct: 101 --------DKDQLFDR--TQELNKHLSSYMDGLTAKVFRTYNASHTFQEQLKN-TPVSGS 149
Query: 372 EAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKA 431
EKILAYNRANR VA+LCNHQR+V K+ D M +++KI RALK K
Sbjct: 150 VNEKILAYNRANREVAILCNHQRTVSKTFDNQMNRIEDKI-----------RALKYQK-- 196
Query: 432 GESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWT 491
RLK+ +L L+ + K +L+ + + W +
Sbjct: 197 --------------MRLKKTMLTLDPKLKKKR---------PELDEPESDLGEEWCEEYE 233
Query: 492 ENVQGQ--------VKYIMLNPSSKL------KGEKDWQKYETARKLAKSINKIRENYQA 537
++++ + +K IM N S + G+ + +K +T K+ I K+ E
Sbjct: 234 KHLEEKEKIDFERSLKKIMKNASQRQLSKERKTGKMEVKKSQTVEKVEAQIEKVNE---- 289
Query: 538 DWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSL-----RVEHIQLHE-EK 591
R + V L + EK+E++ +G + R+ ++ +
Sbjct: 290 ---------RIKVVNLTKV---------EKEENKTTALGTSKINYIDPRISAAWCYKYDV 331
Query: 592 DEKKIYNKTQRAKFRWAIDM 611
KI+NK+ R KF+WA+++
Sbjct: 332 PIDKIFNKSLRDKFKWAMEV 351
>gi|213402109|ref|XP_002171827.1| DNA topoisomerase I [Schizosaccharomyces japonicus yFS275]
gi|211999874|gb|EEB05534.1| DNA topoisomerase I [Schizosaccharomyces japonicus yFS275]
Length = 654
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/197 (50%), Positives = 124/197 (62%), Gaps = 4/197 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE---KERAVITD 57
M GK + L AEE+A F+ ++E ++ F NF +D++ E K + +
Sbjct: 263 MLYNGKPIDLPPAAEEVAGFFGALLESDHAQNPTFQKNFFRDFQAVCKEAGMKSADIPKE 322
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
+ CDFR M YF E +K MSKEEKK++K + E +++ C +DG KEK+GNFRIE
Sbjct: 323 FNSCDFRPMFEYFESLKEAKKNMSKEEKKELKKKKEEEEEKFKWCLLDGRKEKVGNFRIE 382
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW 177
PPGLFRGRG HPK G LKRRV E I IN K +KVP P PGHKW EVRHD+QVTWLA W
Sbjct: 383 PPGLFRGRGSHPKTGTLKRRVYPEQITINIGKGAKVPEPLPGHKWAEVRHDDQVTWLAMW 442
Query: 178 TENVQGQVKYIMLNPSS 194
ENV G VKY PSS
Sbjct: 443 HENVNGNVKY-STRPSS 458
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 445 LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVT 485
L ++ E++ + DK+ENKT ALGTSK+NY+DPR++ +
Sbjct: 581 LIKMDERIKVMSNSIIDKDENKTTALGTSKINYIDPRLTFS 621
>gi|147853091|emb|CAN81282.1| hypothetical protein VITISV_037391 [Vitis vinifera]
Length = 1449
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 112/245 (45%), Positives = 142/245 (57%), Gaps = 41/245 (16%)
Query: 254 KDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQL 313
KD+D+ADTVGCC+L+VE++ P + FDFLGKDSIRY V VE V+K ++
Sbjct: 1202 KDDDEADTVGCCTLKVENVIPE-----PPNSLQFDFLGKDSIRYEKTVEVELPVYKAIEQ 1256
Query: 314 FVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEA 373
F K GSDDLFD+L+TS LN HL ELM GLTAKVFRTYNASITL +
Sbjct: 1257 FRVGKSGSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEM------------ 1304
Query: 374 EKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKA-- 431
VA++CNHQR++ KSH M L EKI + + + L AKK
Sbjct: 1305 ------------VAIICNHQRTISKSHTAQMTRLTEKIDEMKGVLNGLKTDLARAKKGKP 1352
Query: 432 ------GESKAMTDKKKTALGR-LKEQLLKLEVQETD---KEENKTIALGTSKLNYLDPR 481
G+ + +T + L R + + K+E E D KE+ KT+ALGTSK+NYLDPR
Sbjct: 1353 PLKDADGKRRNLTPEATYRLERKIAQTNAKIEKMERDKDTKEDLKTVALGTSKINYLDPR 1412
Query: 482 ISVTW 486
ISV W
Sbjct: 1413 ISVAW 1417
>gi|340378351|ref|XP_003387691.1| PREDICTED: hypothetical protein LOC100640755 [Amphimedon
queenslandica]
Length = 1559
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/132 (66%), Positives = 103/132 (78%), Gaps = 6/132 (4%)
Query: 171 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 230
VTWLASWTEN+QGQ+KY+MLNP+S+LKGEKD KYET ++L I +IR NY++D KS
Sbjct: 507 VTWLASWTENIQGQIKYVMLNPTSRLKGEKDLAKYETVKRLKGRIEEIRRNYESDLKS-- 564
Query: 231 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDF 289
R+ A KLAL AGNEKD D+ ADTVGCCSLRVEHI+LHEE DGK +V FDF
Sbjct: 565 ---RETAGGCSVFHKLALGAGNEKDADEAADTVGCCSLRVEHIKLHEELDGKSDMVEFDF 621
Query: 290 LGKDSIRYYNEV 301
LGKDSIRYYN+V
Sbjct: 622 LGKDSIRYYNKV 633
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 86/113 (76%), Gaps = 6/113 (5%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+QGQ+KY+MLNP+S+LKGEKD KYET ++L I +IR NY++D KS
Sbjct: 506 TVTWLASWTENIQGQIKYVMLNPTSRLKGEKDLAKYETVKRLKGRIEEIRRNYESDLKS- 564
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDEK 594
R+ A KLAL AGNEKD D+ ADTVGCCSLRVEHI+LHEE D K
Sbjct: 565 ----RETAGGCSVFHKLALGAGNEKDADEAADTVGCCSLRVEHIKLHEELDGK 613
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/123 (59%), Positives = 89/123 (72%), Gaps = 6/123 (4%)
Query: 374 EKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKA-- 431
EKIL+YNRANRAVAVLCNHQR+ PK+ D M NL+ KI+ K + + DA++ +K KK
Sbjct: 1408 EKILSYNRANRAVAVLCNHQRTAPKTFDTQMSNLQAKITAKEEAILDAKKEIKKMKKELK 1467
Query: 432 GESKAMTDKKKTA----LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWL 487
G S + KK + L +L+EQL KLE+Q TDKEENK IALGTSKLNYLDPRISV+W
Sbjct: 1468 GTSDSKLQKKLESKVKQLPKLEEQLKKLEIQATDKEENKEIALGTSKLNYLDPRISVSWC 1527
Query: 488 ASW 490
W
Sbjct: 1528 KKW 1530
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 20/25 (80%)
Query: 594 KKIYNKTQRAKFRWAIDMATADFVF 618
+K+YN+TQR KF WAI+MA FVF
Sbjct: 1535 EKVYNRTQREKFAWAIEMADETFVF 1559
>gi|12654247|gb|AAH00943.1| Unknown (protein for IMAGE:3448011), partial [Homo sapiens]
Length = 176
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 92/147 (62%), Positives = 111/147 (75%), Gaps = 6/147 (4%)
Query: 350 RTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKE 409
RTYNASITLQQQL EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+
Sbjct: 1 RTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQT 60
Query: 410 KISNKRKQVKDAERALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKE 463
KI K++Q+ DA R LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+E
Sbjct: 61 KIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDRE 120
Query: 464 ENKTIALGTSKLNYLDPRISVTWLASW 490
ENK IALGTSKLNYLDPRI+V W W
Sbjct: 121 ENKQIALGTSKLNYLDPRITVAWCKKW 147
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 153 KIYNKTQREKFAWAIDMADEDYEF 176
>gi|371944525|gb|AEX62349.1| DNA topoisomerase 1b [Moumouvirus Monve]
Length = 214
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 130/203 (64%), Gaps = 5/203 (2%)
Query: 164 EVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQ 223
++ HD V WLA++ + + G++KY+ L S LK + D K++ ARKL + I +IR+ +
Sbjct: 2 DIIHDQTVEWLAAYKDTITGKMKYVWLGAQSDLKAKSDLNKFDLARKLKRKIKQIRKENE 61
Query: 224 ADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPY 283
+S + RQ A ALYFID ALR GNEK +D+ DTVG SLR+EH+ L E
Sbjct: 62 NALRSDDKFTRQIATALYFIDNFALRVGNEKADDETDTVGVTSLRIEHVHLLENNR---- 117
Query: 284 VVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEG 343
V DFLGKDS+RY + ++ +V++NL+ F+E K D LFD + + +NK+L M+
Sbjct: 118 -VRLDFLGKDSVRYNRTLEIDTQVYQNLKEFMEGKSPQDQLFDLITPTDVNKYLQSFMKN 176
Query: 344 LTAKVFRTYNASITLQQQLNELM 366
LTAKVFRTYNAS Q++L +L+
Sbjct: 177 LTAKVFRTYNASNLFQKELKKLI 199
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 70/107 (65%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA++ + + G++KY+ L S LK + D K++ ARKL + I +IR+ + +S
Sbjct: 8 TVEWLAAYKDTITGKMKYVWLGAQSDLKAKSDLNKFDLARKLKRKIKQIRKENENALRSD 67
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHE 589
+ RQ A ALYFID ALR GNEK +D+ DTVG SLR+EH+ L E
Sbjct: 68 DKFTRQIATALYFIDNFALRVGNEKADDETDTVGVTSLRIEHVHLLE 114
>gi|328865609|gb|EGG13995.1| DNA topoisomerase I [Dictyostelium fasciculatum]
Length = 881
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 120/183 (65%), Gaps = 1/183 (0%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++L+ EE+ATFYA +E E+ KE F NF ++R ++ +++ V+ DF
Sbjct: 425 GKALELTPIQEEVATFYATYLETEHVQKEQFRKNFFAEFRALLSTEQQKVVKSFELLDFS 484
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
K+H + V + E+R A + EEKK+ KDE E + ++YG +DGHK+KIGN+ +EPPGLF G
Sbjct: 485 KIHKFLVARKEKRLARTTEEKKEEKDEKEKLREKYGYAMVDGHKQKIGNYMVEPPGLFLG 544
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQG 183
RG+HPK G LK R+ D+ IN ++ VP PP G+ WK+V H+N VTWL+ W ENV G
Sbjct: 545 RGKHPKTGMLKNRIYPSDVTINIGSEADVPEPPIKGYNWKQVIHNNTVTWLSFWKENVNG 604
Query: 184 QVK 186
K
Sbjct: 605 GYK 607
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 109/200 (54%), Gaps = 53/200 (26%)
Query: 340 LMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKS 399
LM GL+AKVFRTYNASITLQ +L ++ D + EKIL Y RANR VA+LCNHQRS PK+
Sbjct: 651 LMTGLSAKVFRTYNASITLQNELAKMPDDLETIDEKILFYTRANREVAILCNHQRSAPKT 710
Query: 400 HDKSMGNLKEKI--------------------------SNKRKQV--------------- 418
H +SMG + KI S+++K++
Sbjct: 711 HTESMGRFQAKIDELDDRKRLAAHDLNQLNEKKGEALSSSEKKKIMKREDERLKAAIQKA 770
Query: 419 ----KDAERALKDAKKAGESKA--------MTDKKKTALGRLKEQLLKLEVQETDKEENK 466
KDAE+ ++ ++ E+K DK + + L+EQ+ K E+ +T K+E
Sbjct: 771 IETNKDAEKTDEEVRQEAETKFERSRKLSDQVDKLELKIASLEEQIKKQELTKTGKDETS 830
Query: 467 TIALGTSKLNYLDPRISVTW 486
T+ALGTSK+NYLDPRI+ W
Sbjct: 831 TVALGTSKINYLDPRITAAW 850
>gi|430732207|gb|AGA55504.1| topoisomerase, partial [Carabus problematicus]
Length = 137
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/123 (64%), Positives = 97/123 (78%)
Query: 318 KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKIL 377
K DDLFDRLNT ++NKHL+ELMEGLTAKVFRTYNAS TLQQQL+EL D + AEKIL
Sbjct: 1 KSAGDDLFDRLNTQIMNKHLNELMEGLTAKVFRTYNASWTLQQQLDELTSADDTVAEKIL 60
Query: 378 AYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAM 437
+YNRANRAVA+LCNHQRSVPK H KSM LKEKI K+ + + ER ++DA++ + ++
Sbjct: 61 SYNRANRAVAILCNHQRSVPKGHAKSMDKLKEKIEQKKDSIMEMERQVQDAQRQAKRGSV 120
Query: 438 TDK 440
+K
Sbjct: 121 KEK 123
>gi|405953969|gb|EKC21526.1| DNA topoisomerase 1 [Crassostrea gigas]
Length = 325
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/198 (41%), Positives = 134/198 (67%), Gaps = 2/198 (1%)
Query: 200 KDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAG-NEKDEDQ 258
KD +K AR+L++ I+++R+ Y D +SK+ + RQRAVALYFID R+G +K D+
Sbjct: 59 KDRRKLNNARRLSRFIDEVRKKYGNDLESKDPKERQRAVALYFIDMFVFRSGWKKKRGDE 118
Query: 259 ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENK 318
+++ GCC LR +H++L + + K ++V F+F GKD+I Y+ V VEK V+ NL+ F + K
Sbjct: 119 SESAGCCLLRKKHMKLVKNANQK-FLVEFNFSGKDAIPYHKVVEVEKIVYLNLKAFQKGK 177
Query: 319 KGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILA 378
D +F+ + + +N +L +M+GLT++VFRTY+AS ++++L E D SE+ KI +
Sbjct: 178 SDEDYVFNLIEANFVNAYLKSIMDGLTSRVFRTYHASQMMEKKLAEFTRADDSESRKIKS 237
Query: 379 YNRANRAVAVLCNHQRSV 396
+ +AN VA++ NH+R V
Sbjct: 238 FKKANNEVAIILNHKRQV 255
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Query: 513 KDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAG-NEKDEDQ 571
KD +K AR+L++ I+++R+ Y D +SK+ + RQRAVALYFID R+G +K D+
Sbjct: 59 KDRRKLNNARRLSRFIDEVRKKYGNDLESKDPKERQRAVALYFIDMFVFRSGWKKKRGDE 118
Query: 572 ADTVGCCSLRVEHIQLHEEKDEK 594
+++ GCC LR +H++L + ++K
Sbjct: 119 SESAGCCLLRKKHMKLVKNANQK 141
>gi|22091413|gb|AAL87337.2| putative DNA topoisomerase I [Arabidopsis thaliana]
Length = 232
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/195 (47%), Positives = 121/195 (62%), Gaps = 13/195 (6%)
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+K + F K +DDLFD L+TS LN HL ELM GLTAKVFRTYNASITL L
Sbjct: 2 VEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNTHLKELMAGLTAKVFRTYNASITLDLML 61
Query: 363 N-ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
+ E D D EK++ Y +AN+ VA++CNHQR+V KSH + L KI R+Q+K+
Sbjct: 62 SKETRDGDV--PEKVVVYQQANKEVAIICNHQRTVSKSHGAQVEKLAVKIEELREQIKEL 119
Query: 422 ERALKDAKKAGESKAMTD---KKKTALGRLKEQLL----KLEVQETD---KEENKTIALG 471
L AKK +D K+ L+++++ K+E E D KE+ KT+ALG
Sbjct: 120 NIDLDRAKKGRTPLMGSDGKRKRNLTPEALEKKIMQTQGKIEKMERDMQTKEDMKTVALG 179
Query: 472 TSKLNYLDPRISVTW 486
TSK+NY+DPRI+V W
Sbjct: 180 TSKINYMDPRITVAW 194
>gi|238604470|ref|XP_002396207.1| hypothetical protein MPER_03600 [Moniliophthora perniciosa FA553]
gi|215468335|gb|EEB97137.1| hypothetical protein MPER_03600 [Moniliophthora perniciosa FA553]
Length = 238
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 74/127 (58%), Positives = 97/127 (76%), Gaps = 4/127 (3%)
Query: 293 DSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTY 352
DSIRYYN V ++ +VFKN+++F ENK D+LFDR+NT++LNKHL+ M+GLTAKVFRTY
Sbjct: 1 DSIRYYNRVAIDTQVFKNIKIFKENKNDDDNLFDRVNTAMLNKHLNSEMKGLTAKVFRTY 60
Query: 353 NASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKIS 412
NAS T Q L+E + EK+ AYN+ANR VA+LCNHQRSVPK+HD+SM +K++
Sbjct: 61 NASHTFQTLLDESHLEGATLQEKLNAYNKANRLVAILCNHQRSVPKTHDQSM----QKMA 116
Query: 413 NKRKQVK 419
K K +K
Sbjct: 117 YKYKALK 123
>gi|70939510|ref|XP_740287.1| topoisomerase I [Plasmodium chabaudi chabaudi]
gi|56517902|emb|CAH81857.1| topoisomerase I, putative [Plasmodium chabaudi chabaudi]
Length = 429
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/221 (40%), Positives = 128/221 (57%), Gaps = 20/221 (9%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMT-------EKERAV----IT 56
++L+ AEE+AT++ +I +Y TK+ F NF K + ++ E E V I+
Sbjct: 211 IELNPKAEELATYWCSVIGTDYCTKDKFILNFFKTFINNLEKDNIIRRENEHKVKNGDIS 270
Query: 57 DLSKCDFRKMHAYFVQKSEER---KAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGN 113
+ DF + + ++ +ER KEE KKI+ E E Y +D +EKI +
Sbjct: 271 NFKFIDFMTIKEHLIKLRDERLNKTKEEKEEDKKIRMEKEL---PYTFALVDWIREKISS 327
Query: 114 FRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVP---PPPPGHKWKEVRHDNQ 170
+ EPPGLFRGRGEHPK G LK+R+ ED++IN SKD+ P GH W ++ HDN+
Sbjct: 328 NKAEPPGLFRGRGEHPKQGLLKKRIFPEDVVINISKDAPAPRLYDDMCGHNWGDIYHDNK 387
Query: 171 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKL 211
VTWLA + +++ Q+KY L+ SK KG KD+ KYE ARKL
Sbjct: 388 VTWLAYYKDSINDQIKYTFLSAQSKFKGYKDFLKYENARKL 428
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKL 524
VTWLA + +++ Q+KY L+ SK KG KD+ KYE ARKL
Sbjct: 388 VTWLAYYKDSINDQIKYTFLSAQSKFKGYKDFLKYENARKL 428
>gi|17061940|dbj|BAB72200.1| topoisomerase I [Cryptococcus bacillisporus]
Length = 270
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/124 (58%), Positives = 93/124 (75%), Gaps = 2/124 (1%)
Query: 289 FLGKDSIRYYNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAK 347
FLGKDS+R++ EV V+ +VFKN++LF E KK DD+FDRL T++LNKHL+ +M GLTAK
Sbjct: 1 FLGKDSMRFHQEVEVDPQVFKNIKLFKAEPKKKGDDIFDRLTTTLLNKHLNTMMPGLTAK 60
Query: 348 VFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNL 407
VFRTYNAS T Q+QL + + + AEKI AYN ANR VA+LCNHQ+SV K + S
Sbjct: 61 VFRTYNASWTFQEQLKK-TPKNGTVAEKIAAYNTANRDVAILCNHQKSVSKGFEGSFAKA 119
Query: 408 KEKI 411
++KI
Sbjct: 120 EDKI 123
>gi|17061914|dbj|BAB72187.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061916|dbj|BAB72188.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061918|dbj|BAB72189.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061920|dbj|BAB72190.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061922|dbj|BAB72191.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061924|dbj|BAB72192.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061926|dbj|BAB72193.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061928|dbj|BAB72194.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061930|dbj|BAB72195.1| topoisomerase I [Cryptococcus bacillisporus]
Length = 270
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/124 (58%), Positives = 93/124 (75%), Gaps = 2/124 (1%)
Query: 289 FLGKDSIRYYNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAK 347
FLGKDS+R++ EV V+ +VFKN++LF E KK DD+FDRL T++LNKHL+ +M GLTAK
Sbjct: 1 FLGKDSMRFHQEVEVDPQVFKNIKLFKAEPKKKGDDIFDRLTTTLLNKHLNTMMPGLTAK 60
Query: 348 VFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNL 407
VFRTYNAS T Q+QL + + + AEKI AYN ANR VA+LCNHQ+SV K + S
Sbjct: 61 VFRTYNASWTFQEQLRK-TPKNGTVAEKIAAYNTANRDVAILCNHQKSVSKGFEGSFAKA 119
Query: 408 KEKI 411
++KI
Sbjct: 120 EDKI 123
>gi|17061932|dbj|BAB72196.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061934|dbj|BAB72197.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061936|dbj|BAB72198.1| topoisomerase I [Cryptococcus bacillisporus]
gi|17061938|dbj|BAB72199.1| topoisomerase I [Cryptococcus bacillisporus]
Length = 270
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 72/124 (58%), Positives = 93/124 (75%), Gaps = 2/124 (1%)
Query: 289 FLGKDSIRYYNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAK 347
FLGKDS+R++ EV V+ +VFKN++LF E KK DD+FDRL T++LNKHL+ +M GLTAK
Sbjct: 1 FLGKDSMRFHQEVEVDPQVFKNIKLFKAEPKKKGDDIFDRLTTTLLNKHLNTMMPGLTAK 60
Query: 348 VFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNL 407
VFRTYNAS T Q+QL + + + AEKI AYN ANR VA+LCNHQ+SV K + S
Sbjct: 61 VFRTYNASWTFQEQLKK-TPKNGTVAEKIAAYNTANRDVAILCNHQKSVSKGFEGSFAKA 119
Query: 408 KEKI 411
++KI
Sbjct: 120 EDKI 123
>gi|17061908|dbj|BAB72184.1| topoisomerase I [Cryptococcus neoformans var. grubii]
gi|17061910|dbj|BAB72185.1| topoisomerase I [Cryptococcus neoformans var. neoformans]
gi|17061912|dbj|BAB72186.1| topoisomerase I [Cryptococcus neoformans A/D]
Length = 270
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/124 (57%), Positives = 92/124 (74%), Gaps = 2/124 (1%)
Query: 289 FLGKDSIRYYNEVPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAK 347
FLGKDS+R++ EV V+ +VFKN++LF + KK DD+FDRL T++LNKHL+ +M GLTAK
Sbjct: 1 FLGKDSMRFHQEVEVDPQVFKNIKLFKADPKKKGDDIFDRLTTTLLNKHLNGMMPGLTAK 60
Query: 348 VFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNL 407
VFRTYNAS T Q+QL + + AEKI AYN ANR VA+LCNHQ+SV K + S
Sbjct: 61 VFRTYNASWTFQEQLKN-TPTNGTVAEKIAAYNTANRDVAILCNHQKSVSKGFEGSFAKA 119
Query: 408 KEKI 411
++KI
Sbjct: 120 EDKI 123
>gi|212539988|ref|XP_002150149.1| topoisomerase I [Talaromyces marneffei ATCC 18224]
gi|212539990|ref|XP_002150150.1| topoisomerase I [Talaromyces marneffei ATCC 18224]
gi|210067448|gb|EEA21540.1| topoisomerase I [Talaromyces marneffei ATCC 18224]
gi|210067449|gb|EEA21541.1| topoisomerase I [Talaromyces marneffei ATCC 18224]
Length = 860
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 78/103 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I+KIRE+Y+ KS M
Sbjct: 433 TWLAMWQENVNGNYKYVMLAANSDIKGQSDYKKFEKARELKKHIDKIREDYRKGLKSDLM 492
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y IDK ALRAGNEK ED+ADTVGCCSL+ E+I L
Sbjct: 493 ADRQRATAVYLIDKFALRAGNEKGEDEADTVGCCSLKYENISL 535
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 418 VKDAERALKDAKKAG----ESKAMT-DKKKTALGRLKEQLLKLEVQETDKEENKTIALGT 472
+KD E+ + K G E K T +K + + +L++++ + +Q DKE NK +ALGT
Sbjct: 754 LKDMEKKFQKENKTGKVEVEGKGQTVEKLENNVTKLEQRIENMSLQAEDKENNKEVALGT 813
Query: 473 SKLNYLDPRISVTW 486
SK+NY+DPR++V +
Sbjct: 814 SKINYIDPRLTVVF 827
>gi|74183500|dbj|BAE36613.1| unnamed protein product [Mus musculus]
Length = 144
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 85/115 (73%), Gaps = 6/115 (5%)
Query: 382 ANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAK------KAGESK 435
ANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R LK AK K ++K
Sbjct: 1 ANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSAKADAKVMKDAKTK 60
Query: 436 AMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
+ + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNYLDPRI+V W W
Sbjct: 61 KVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKW 115
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDM D+ F
Sbjct: 121 KIYNKTQREKFAWAIDMTDEDYEF 144
>gi|242803152|ref|XP_002484116.1| topoisomerase I [Talaromyces stipitatus ATCC 10500]
gi|218717461|gb|EED16882.1| topoisomerase I [Talaromyces stipitatus ATCC 10500]
Length = 864
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/103 (59%), Positives = 79/103 (76%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IRE+Y+ KS+ M
Sbjct: 437 TWLAMWQENVNGNYKYVMLAANSDIKGQSDYKKFEKARELKKHIDRIREDYRVGLKSELM 496
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y IDK ALRAGNEK ED+ADTVGCCSL+ E++ L
Sbjct: 497 ADRQRATAVYLIDKFALRAGNEKGEDEADTVGCCSLKYENVSL 539
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 5/74 (6%)
Query: 418 VKDAERALKDAKKAG----ESKAMT-DKKKTALGRLKEQLLKLEVQETDKEENKTIALGT 472
+KD E+ + K G E K T +K + + +L++++ + +Q DKE NK +ALGT
Sbjct: 758 LKDMEKKFQKENKTGKVEAEGKGQTIEKLENNVAKLEQRIETMSLQAEDKENNKEVALGT 817
Query: 473 SKLNYLDPRISVTW 486
SK+NY+DPR++V +
Sbjct: 818 SKINYIDPRLTVVF 831
>gi|296811446|ref|XP_002846061.1| DNA topoisomerase 1 [Arthroderma otae CBS 113480]
gi|238843449|gb|EEQ33111.1| DNA topoisomerase 1 [Arthroderma otae CBS 113480]
Length = 896
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 469 TWLAMWQENVNGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIDRIRKDYKKGLKDELM 528
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 529 VNRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTL 571
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 32/42 (76%)
Query: 445 LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ ++ +++ + +Q DKE NK +ALGTSKLNY+DPR++V +
Sbjct: 822 ISKIDQRIENMLLQAEDKENNKEVALGTSKLNYIDPRLTVVF 863
>gi|315044233|ref|XP_003171492.1| DNA topoisomerase 1 [Arthroderma gypseum CBS 118893]
gi|311343835|gb|EFR03038.1| DNA topoisomerase 1 [Arthroderma gypseum CBS 118893]
Length = 895
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/103 (57%), Positives = 78/103 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W ENV G KY+ML +S +KG+ D++K+E AR+L K I++IR++Y+ K + M
Sbjct: 468 TWLAMWQENVNGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIDRIRKDYKKGLKDELM 527
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ EH+ L
Sbjct: 528 VNRQRATAVYLIDQFALRAGNEKGEDEADTVGCCSLKFEHVTL 570
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 32/42 (76%)
Query: 445 LGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+ ++ +++ + +Q DKE NK +ALGTSKLNY+DPR++V +
Sbjct: 821 ISKIDQRIENMLLQAEDKENNKEVALGTSKLNYIDPRLTVVF 862
>gi|194766099|ref|XP_001965162.1| GF23753 [Drosophila ananassae]
gi|190617772|gb|EDV33296.1| GF23753 [Drosophila ananassae]
Length = 240
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 107/197 (54%), Gaps = 17/197 (8%)
Query: 8 MKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMH 67
+KL+ AEE+AT YA+ + + FN NF KD++ ++ R I CDF K+
Sbjct: 49 LKLNPTAEELATLYAKFMNSPLAITDTFNENFFKDFQSHLSRALRRQILSFELCDFTKI- 107
Query: 68 AYFVQKSE--ERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGR 125
A+++Q + +RK M+ + YG CTIDG + ++ +F + P L+R
Sbjct: 108 AFYIQGQQGVQRKLMTP-----------MMRNHYGYCTIDGKRHRVPHFSFDGPSLYRRS 156
Query: 126 GEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQV 185
G PK G +K R+Q ED+ IN S+++ P P GH WK V HD +V WL SWT+ + G+V
Sbjct: 157 G--PKYGMVKPRIQPEDVNIN-SQENGAPGAPDGHTWKSVIHDRRVDWLWSWTDALSGRV 213
Query: 186 KYIMLNPSSKLKGEKDW 202
Y ++ ++DW
Sbjct: 214 HYQVIQVGLPQDFQQDW 230
>gi|253740233|gb|ACT34665.1| topoisomerase family protein, partial [Caenorhabditis brenneri]
Length = 159
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 77/128 (60%), Positives = 98/128 (76%), Gaps = 5/128 (3%)
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
Q+QL +L +P S A KIL+YNRANR VA+LCNHQRSV K+HD++M L++KI +K+K+V
Sbjct: 1 QEQLQKLTNPKDSVAAKILSYNRANRQVAILCNHQRSVSKTHDQAMEKLEQKIKDKKKEV 60
Query: 419 KDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
K+AE ALK A+ A + KA + RLKEQL KL++ TDK+ENK IALGTSKLNYL
Sbjct: 61 KEAEEALKHARGADKEKA-----QKKYDRLKEQLKKLKIARTDKDENKQIALGTSKLNYL 115
Query: 479 DPRISVTW 486
DPRI+V W
Sbjct: 116 DPRITVAW 123
>gi|361131992|gb|EHL03607.1| putative DNA topoisomerase 1 [Glarea lozoyensis 74030]
Length = 906
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/105 (56%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML S +KG+ D++K+E AR+L K I++IR++Y D K++
Sbjct: 474 ATWLAMWQENINGAYKYVMLAAKSSIKGQSDYKKFEKARELKKHIDRIRKDYTRDLKAEL 533
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQL 587
M RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L
Sbjct: 534 MADRQRATAVYLIDKFALRAGNEKDAENEAETVGCCSLKYEHVTL 578
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%)
Query: 451 QLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
Q+ + +Q D+E NK +ALGTSK+NY+DPR++V +
Sbjct: 836 QISNMMLQAEDREGNKEVALGTSKINYIDPRLTVVF 871
>gi|320590738|gb|EFX03181.1| topoisomerase 1 [Grosmannia clavigera kw1407]
Length = 832
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/107 (57%), Positives = 77/107 (71%), Gaps = 1/107 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLA W EN+ G KY+ML +S +KG+ D +K+E AR+L K I +IR +Y + KS+
Sbjct: 400 ATWLAMWQENINGCYKYVMLAANSAIKGQADHKKFEKARELKKHITRIRADYTRELKSEV 459
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDED-QADTVGCCSLRVEHIQLHE 589
M RQRA A+Y ID+ ALRAGNEKD D +ADTVGCCSL+ EHI L E
Sbjct: 460 MADRQRATAMYLIDRFALRAGNEKDTDNEADTVGCCSLKYEHITLRE 506
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 36/51 (70%)
Query: 436 AMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
A +K + A ++ E++ +E+Q DK+ NK +AL TSK+NY+DPR++V +
Sbjct: 747 ASVEKLEAAAQKIDERIHNMELQAADKDGNKEVALSTSKINYIDPRLTVVF 797
>gi|398398109|ref|XP_003852512.1| DNA topoisomerase 1 [Zymoseptoria tritici IPO323]
gi|339472393|gb|EGP87488.1| hypothetical protein MYCGRDRAFT_100306 [Zymoseptoria tritici
IPO323]
Length = 868
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 78/103 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ KY+ML +S +KG D++K+E AR+L K I+KIR++Y+ + KS+ M
Sbjct: 441 TWLAMWQENINNAYKYVMLAANSDIKGMSDFKKFEKARELKKHIDKIRKDYEKELKSEVM 500
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQRA A+Y ID+ ALRAGNEK +D+ADTVGCCSL+ E+I L
Sbjct: 501 AERQRATAVYLIDRFALRAGNEKSDDEADTVGCCSLKFENISL 543
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 425 LKDAKKAGESKAMT-DKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRIS 483
LK K E K+ T DK + L +L ++ + +Q D++ NK +ALGTSK+NY+DPR++
Sbjct: 773 LKKGKVEAEGKSATVDKYEKDLEKLDARIATMRLQAEDRDNNKEVALGTSKINYIDPRLT 832
Query: 484 VTW 486
V +
Sbjct: 833 VVF 835
>gi|297683810|ref|XP_002819561.1| PREDICTED: DNA topoisomerase I, mitochondrial-like [Pongo abelii]
Length = 313
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 89/122 (72%), Gaps = 6/122 (4%)
Query: 371 SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKD--- 427
S A KIL+YNRANR VAVLCNHQR+ P + +KSM NL+ KI K++QV +A L+
Sbjct: 159 STAAKILSYNRANRVVAVLCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRARA 218
Query: 428 ---AKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
A+ +S+++ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNYLDPRIS+
Sbjct: 219 EHKAQGDDKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRISI 278
Query: 485 TW 486
W
Sbjct: 279 AW 280
>gi|121703081|ref|XP_001269805.1| topoisomerase I [Aspergillus clavatus NRRL 1]
gi|119397948|gb|EAW08379.1| topoisomerase I [Aspergillus clavatus NRRL 1]
Length = 886
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 78/103 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR++YQ K + M
Sbjct: 459 TWLAMWQENINGNYKYVMLAANSDVKGQSDFKKFEKARELKKHIDRIRKDYQKSLKHELM 518
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ+A A+Y ID+ ALRAGNEK ED+ADTVGCCSL+ E++ L
Sbjct: 519 VERQKATAVYLIDQFALRAGNEKGEDEADTVGCCSLKYENVTL 561
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 36/43 (83%)
Query: 444 ALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
A+ +L++++ +E+Q DKE+NK +ALGTSK+NY+DPR++V +
Sbjct: 811 AITKLEQRIETMELQAQDKEDNKEVALGTSKINYIDPRLTVVF 853
>gi|238598109|ref|XP_002394520.1| hypothetical protein MPER_05582 [Moniliophthora perniciosa FA553]
gi|215463661|gb|EEB95450.1| hypothetical protein MPER_05582 [Moniliophthora perniciosa FA553]
Length = 265
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 90/138 (65%), Gaps = 3/138 (2%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE---KERAVITD 57
M+ GK + L ++EE+A FYA +IE ++ FN NF +DW K + + + +TD
Sbjct: 107 MKYDGKVLNLPPESEEVAGFYAALIETDHAQDATFNKNFFEDWLKVLQDHPPRNGIKVTD 166
Query: 58 LSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
KCDFR M+ YF + ++KAMS EKK+IK + + +Y C +DG KEK+GNFR+E
Sbjct: 167 FDKCDFRPMYEYFEAEKAKKKAMSAAEKKEIKKQKDEAEAKYTHCFLDGRKEKVGNFRVE 226
Query: 118 PPGLFRGRGEHPKMGKLK 135
PPGLFRGRGEHPK G LK
Sbjct: 227 PPGLFRGRGEHPKKGSLK 244
>gi|16555214|gb|AAL23664.1| topoisomerase I [Oryza sativa]
Length = 105
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 77/107 (71%), Gaps = 3/107 (2%)
Query: 287 FDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTA 346
FDFLGKDSI+Y N V VE V+K + F K +DDLFD L+TS LN HL EL+ GLTA
Sbjct: 1 FDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTA 60
Query: 347 KVFRTYNASITLQQQLN-ELMDPDFSEAEKILAYNRANRAVAVLCNH 392
KVFRTYNASITL + L+ E D D + +KI+ Y +AN+ VA+LCNH
Sbjct: 61 KVFRTYNASITLDEMLSQETKDGDVT--QKIVVYQKANKEVAILCNH 105
>gi|150865726|ref|XP_001385059.2| DNA topoisomerase I [Scheffersomyces stipitis CBS 6054]
gi|149386982|gb|ABN67030.2| DNA topoisomerase I [Scheffersomyces stipitis CBS 6054]
Length = 780
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/105 (53%), Positives = 73/105 (69%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W EN+ KY+ SS +KG D++K+ETAR+L ++ IR++Y KS+
Sbjct: 351 TVTWLAMWRENIADSFKYVRFAASSSIKGVSDFKKFETARRLRSHVDAIRKDYTKMLKSE 410
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A+Y ID ALRAG EK +D+ADTVGCCSLR EHI L
Sbjct: 411 LMQDRQMASAIYLIDVFALRAGGEKGDDEADTVGCCSLRYEHITL 455
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 407 LKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENK 466
+KEK++ K+ + L AK + +K + + ++ +++ +Q DKE+N
Sbjct: 668 IKEKMAKIDDLEKEYKAELNGAKPEVKKNLTVEKLQQQVEVIENRIVTTTLQLKDKEDNS 727
Query: 467 TIALGTSKLNYLDPRISVTW 486
++LGTSK+NY+DPR++V +
Sbjct: 728 EVSLGTSKMNYIDPRLTVMF 747
>gi|149236013|ref|XP_001523884.1| DNA topoisomerase I [Lodderomyces elongisporus NRRL YB-4239]
gi|146452260|gb|EDK46516.1| DNA topoisomerase I [Lodderomyces elongisporus NRRL YB-4239]
Length = 849
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 74/104 (71%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ KY+ +S +KG+ D++K+E AR+L + ++ IR++Y KS++
Sbjct: 423 VTWLAMWKENISDSFKYVRFAANSSVKGQSDFKKFEKARELRQHVDAIRKDYTKMLKSEK 482
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A+Y ID ALRAG EK ED+ADTVGCCSLR EH+ L
Sbjct: 483 MQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSLRYEHLTL 526
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 50/81 (61%)
Query: 406 NLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEEN 465
++KEK+ + K+ ++ LK K A +K KT + ++ +++ +Q DKE+N
Sbjct: 736 DIKEKLDKITELEKEYKKELKTGKPEIPKGATVEKLKTQVENMENRIVSTTLQLKDKEDN 795
Query: 466 KTIALGTSKLNYLDPRISVTW 486
++LGTSK+NY+DPR++V +
Sbjct: 796 SEVSLGTSKMNYIDPRLTVMF 816
>gi|16555216|gb|AAL23665.1| topoisomerase I [Spinacia oleracea]
Length = 102
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/104 (57%), Positives = 74/104 (71%), Gaps = 3/104 (2%)
Query: 289 FLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKV 348
FLGKDSI+Y N V VE V+K + F K +DDLFD L+TS LN HL EL+ GLTAKV
Sbjct: 1 FLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKV 60
Query: 349 FRTYNASITLQQQLN-ELMDPDFSEAEKILAYNRANRAVAVLCN 391
FRTYNASITL + L+ E D D + +KI+ Y +AN+ VA+LCN
Sbjct: 61 FRTYNASITLDEMLSQETKDGDVT--QKIVVYQKANKEVAILCN 102
>gi|33284832|emb|CAE17514.1| DNA topoisomerase I subunit A [Leishmania major]
Length = 200
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+E K++ + EE+AT +A M EH+Y E F NF + WR+ + +++ I L CDF
Sbjct: 71 GREFKMTPEEEEVATMFAVMKEHDYYRMEVFWRNFFESWREILGKRQHP-IRRLELCDFE 129
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ +++ + E++ + +KEEK+ IK++ +A + Y C DG +E++ NFR+EPPGLFRG
Sbjct: 130 PIYQWYLVQREKKLSRTKEEKEAIKEKQDAEAEPYRYCVWDGRREQVANFRVEPPGLFRG 189
Query: 125 RGEHPKMGKLK 135
RG+HP MGKLK
Sbjct: 190 RGKHPLMGKLK 200
>gi|32813236|emb|CAE11800.1| topoisomerase I subunit A [Leishmania panamensis]
Length = 88
Score = 107 bits (267), Expect = 2e-20, Method: Composition-based stats.
Identities = 54/93 (58%), Positives = 62/93 (66%), Gaps = 5/93 (5%)
Query: 260 DTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKK 319
DTVGCCSLRVEHIQL + +V FDFLGKDSIRY N+V V V+ LQ F K
Sbjct: 1 DTVGCCSLRVEHIQLMSDN-----IVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKS 55
Query: 320 GSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTY 352
D+FD+LN + LN HL M GL+AKVFRTY
Sbjct: 56 PGTDIFDQLNPTQLNDHLKSFMNGLSAKVFRTY 88
>gi|63101759|gb|AAH95049.1| Top1l protein [Danio rerio]
Length = 321
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 61/77 (79%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS +AEE+ATF+++M++HEYTTK+ F NF KDWRK MT +E++ ITDL+KCDF
Sbjct: 237 GKHMKLSPNAEEVATFFSKMLDHEYTTKDIFRKNFFKDWRKEMTSEEKSKITDLNKCDFS 296
Query: 65 KMHAYFVQKSEERKAMS 81
M YF +SE RKAM+
Sbjct: 297 NMSEYFKAQSEARKAMT 313
>gi|346979589|gb|EGY23041.1| DNA topoisomerase [Verticillium dahliae VdLs.17]
Length = 909
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/107 (54%), Positives = 75/107 (70%), Gaps = 1/107 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLASW EN+ G KY+M SS +KG+ D K+E AR+L K I++IR +Y D KS+
Sbjct: 478 ATWLASWQENINGAYKYVMTGSSSSVKGKSDHMKFEKARELKKHIDRIRRDYGKDLKSET 537
Query: 544 MRIRQRAVALYFIDKLALRAG-NEKDEDQADTVGCCSLRVEHIQLHE 589
M RQRA A+Y IDK ALRAG + E++A+TVGCCSL+ EH+ L E
Sbjct: 538 MADRQRATAMYLIDKFALRAGNEKNAEEEAETVGCCSLKFEHVTLKE 584
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 447 RLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+++E+ LE+Q D++ NK +ALGTSKLNY+DPR++V +
Sbjct: 836 KIEERAKNLELQAQDRDGNKEVALGTSKLNYIDPRLTVVF 875
>gi|302415000|ref|XP_003005332.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
gi|261356401|gb|EEY18829.1| DNA topoisomerase [Verticillium albo-atrum VaMs.102]
Length = 891
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/107 (53%), Positives = 75/107 (70%), Gaps = 1/107 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
TWLASW EN+ G KY+M SS +KG+ D K+E AR+L K I++IR +Y D KS+
Sbjct: 460 ATWLASWQENINGAYKYVMTGSSSSVKGKSDHMKFEKARELKKHIDRIRRDYGKDLKSET 519
Query: 544 MRIRQRAVALYFIDKLALRAG-NEKDEDQADTVGCCSLRVEHIQLHE 589
M RQRA A+Y ID+ ALRAG + E++A+TVGCCSL+ EH+ L E
Sbjct: 520 MADRQRATAMYLIDRFALRAGNEKNAEEEAETVGCCSLKFEHVTLKE 566
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 447 RLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
+++E+ LE+Q D++ NK +ALGTSKLNY+DPR++V +
Sbjct: 818 KIEERAKNLELQAQDRDGNKEVALGTSKLNYIDPRLTVVF 857
>gi|7331174|gb|AAF60308.1| topoisomerase I [Leishmania donovani]
Length = 89
Score = 103 bits (257), Expect = 3e-19, Method: Composition-based stats.
Identities = 52/91 (57%), Positives = 61/91 (67%), Gaps = 5/91 (5%)
Query: 262 VGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGS 321
VGCCSLRVEHIQL + +V FDFLGKDSIRY N+V V V+ LQ F K
Sbjct: 4 VGCCSLRVEHIQLMPDN-----IVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSPG 58
Query: 322 DDLFDRLNTSVLNKHLSELMEGLTAKVFRTY 352
D+FD+LN + LN HL M+GL+AKVFRTY
Sbjct: 59 MDIFDQLNPTQLNDHLKSFMDGLSAKVFRTY 89
>gi|344259170|gb|EGW15274.1| DNA topoisomerase I, mitochondrial [Cricetulus griseus]
Length = 69
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 54/68 (79%)
Query: 179 ENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 238
EN+Q KYI+LNPSSKLKGE DW KYE AR+L +NKIR YQADWKS EM+ RQ AV
Sbjct: 2 ENIQNTFKYIILNPSSKLKGEMDWHKYEVARRLRGVVNKIRAQYQADWKSPEMKKRQLAV 61
Query: 239 ALYFIDKL 246
ALYFIDK+
Sbjct: 62 ALYFIDKV 69
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 54/68 (79%)
Query: 492 ENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAV 551
EN+Q KYI+LNPSSKLKGE DW KYE AR+L +NKIR YQADWKS EM+ RQ AV
Sbjct: 2 ENIQNTFKYIILNPSSKLKGEMDWHKYEVARRLRGVVNKIRAQYQADWKSPEMKKRQLAV 61
Query: 552 ALYFIDKL 559
ALYFIDK+
Sbjct: 62 ALYFIDKV 69
>gi|89266899|emb|CAJ82195.1| novel protein similar to topoisomerase (DNA) I top1 [Xenopus
(Silurana) tropicalis]
Length = 335
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/81 (58%), Positives = 61/81 (75%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + LS AEE+A+F+A+M++HEYTTKE F N+ DWRK MT +ER VITDL+KCDF
Sbjct: 254 GKPLPLSLQAEEVASFFAKMLDHEYTTKEIFRNNYFMDWRKEMTLEERMVITDLAKCDFT 313
Query: 65 KMHAYFVQKSEERKAMSKEEK 85
+M Y+ K EE+K SKE+K
Sbjct: 314 EMFTYYKGKMEEKKNKSKEDK 334
>gi|194688974|gb|ACF78571.1| unknown [Zea mays]
Length = 84
Score = 99.8 bits (247), Expect = 4e-18, Method: Composition-based stats.
Identities = 49/77 (63%), Positives = 59/77 (76%)
Query: 282 PYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELM 341
P + FDFLGKDSIRY+N V VE+ V+K ++ F KK DLFD+++TS LN HL +LM
Sbjct: 3 PNQIQFDFLGKDSIRYFNTVEVEELVYKAIEGFRAGKKPGQDLFDKIDTSRLNAHLKDLM 62
Query: 342 EGLTAKVFRTYNASITL 358
GLTAKVFRTYNASITL
Sbjct: 63 PGLTAKVFRTYNASITL 79
>gi|2897591|emb|CAA50293.1| topoisomerase I [Mus musculus]
Length = 115
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 60/86 (69%), Gaps = 6/86 (6%)
Query: 411 ISNKRKQVKDAERALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEE 464
I K+ Q+ DA R LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EE
Sbjct: 1 IDAKKDQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREE 60
Query: 465 NKTIALGTSKLNYLDPRISVTWLASW 490
NK IALGTSKLNYLDPRI+V W W
Sbjct: 61 NKQIALGTSKLNYLDPRITVAWCKKW 86
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDM D+ F
Sbjct: 92 KIYNKTQREKFAWAIDMTDEDYEF 115
>gi|339808|gb|AAA61208.1| DNA topoisomerase I (EC 5.99.1.2), partial [Homo sapiens]
Length = 109
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 57/80 (71%), Gaps = 6/80 (7%)
Query: 417 QVKDAERALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIAL 470
Q+ DA R LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IAL
Sbjct: 1 QLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIAL 60
Query: 471 GTSKLNYLDPRISVTWLASW 490
GTSKLNYLDPRI+V W W
Sbjct: 61 GTSKLNYLDPRITVAWCKKW 80
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 86 KIYNKTQREKFAWAIDMADEDYEF 109
>gi|37927501|gb|AAP69819.1| topoisomerase I [Bos taurus]
Length = 67
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 52/68 (76%), Gaps = 4/68 (5%)
Query: 423 RALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRI 482
+ LKDAK +K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNYLDPRI
Sbjct: 3 KVLKDAK----TKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRI 58
Query: 483 SVTWLASW 490
+V W W
Sbjct: 59 TVAWCKKW 66
>gi|20072751|gb|AAH27453.1| TOP1MT protein, partial [Homo sapiens]
Length = 101
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 50/64 (78%)
Query: 423 RALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRI 482
RA A+ G+S+++ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNYLDPRI
Sbjct: 5 RAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLDPRI 64
Query: 483 SVTW 486
S+ W
Sbjct: 65 SIAW 68
>gi|349603771|gb|AEP99515.1| DNA topoisomerase 1-like protein, partial [Equus caballus]
Length = 75
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 38/44 (86%)
Query: 447 RLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASW 490
RL+EQL+KLEVQ TD+EENK IALGTSKLNYLDPRI+V W W
Sbjct: 3 RLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKW 46
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 594 KKIYNKTQRAKFRWAIDMATADFVF 618
+KIYNKTQR KF WAIDMA D+ F
Sbjct: 51 EKIYNKTQREKFAWAIDMADEDYEF 75
>gi|74211521|dbj|BAE26493.1| unnamed protein product [Mus musculus]
Length = 291
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMT 48
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMT 289
>gi|302823507|ref|XP_002993406.1| hypothetical protein SELMODRAFT_136971 [Selaginella moellendorffii]
gi|300138837|gb|EFJ05591.1| hypothetical protein SELMODRAFT_136971 [Selaginella moellendorffii]
Length = 63
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 43/63 (68%)
Query: 287 FDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTA 346
FDFLGKDS RY N V V K V+ + F + KK DLFD+L+TS LN HL + M+GLT
Sbjct: 1 FDFLGKDSTRYQNFVVVNKEVYDAIHNFKKGKKEGADLFDKLDTSNLNAHLKKYMQGLTV 60
Query: 347 KVF 349
KVF
Sbjct: 61 KVF 63
>gi|5163186|gb|AAD40575.1|AF103749_1 topoisomerase I [Canis lupus familiaris]
Length = 43
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 37/43 (86%)
Query: 437 MTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLD 479
+ + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNYLD
Sbjct: 1 VVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLD 43
>gi|76163016|gb|ABA40876.1| SJCHGC07606 protein [Schistosoma japonicum]
Length = 58
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 37/52 (71%)
Query: 435 KAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
K +K K L KE L KL++Q TD++ENK IAL TSKLNYLDPRISV W
Sbjct: 7 KVAYEKLKKRLASAKEALSKLQLQATDRDENKEIALSTSKLNYLDPRISVAW 58
>gi|302805166|ref|XP_002984334.1| hypothetical protein SELMODRAFT_19423 [Selaginella moellendorffii]
gi|300147722|gb|EFJ14384.1| hypothetical protein SELMODRAFT_19423 [Selaginella moellendorffii]
Length = 61
Score = 59.7 bits (143), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/61 (52%), Positives = 41/61 (67%)
Query: 289 FLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKV 348
FLGKDS RY N V V + V+ + F + KK DLFD+L+TS LN HL + ++GLT KV
Sbjct: 1 FLGKDSTRYQNSVVVNEEVYYAIYNFKKGKKEGVDLFDKLDTSNLNAHLKKYIQGLTVKV 60
Query: 349 F 349
F
Sbjct: 61 F 61
>gi|452946517|gb|EME52014.1| DNA topoisomerase [Amycolatopsis decaplanina DSM 44594]
Length = 311
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 25/183 (13%)
Query: 200 KDWQKYETARKLAKSINKIRENYQADWKSKEM-RIRQRAVALYFIDKLALRAGNEKDEDQ 258
+D +K+E LA+ + K+RE + D S+ + R R A AL ID R G E D+
Sbjct: 62 RDEEKHERVLALARKLPKLREAVREDLDSRGLKRERVLAGALRMIDLGVFRTGGESYADE 121
Query: 259 ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSI----RYYNEVPVEKRVFKNLQLF 314
T G +L EH++L +E +VC D+ K I R +E V R+ ++L+
Sbjct: 122 HGTHGVATLLCEHVELRDE-----CLVC-DYPAKHGIQRKVRLRDEALV--RLVRSLR-- 171
Query: 315 VENKKGSDDLFDRLNTSV--------LNKHLSELM-EGLTAKVFRTYNASITLQQQLNEL 365
+ G+ L N++ +N+ L EL+ EG TAK RT+NA++ +
Sbjct: 172 -RARGGNVRLLAYRNSAGWHEVKADDINERLRELVGEGFTAKDLRTWNATVLAASAFADT 230
Query: 366 MDP 368
P
Sbjct: 231 EKP 233
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 513 KDWQKYETARKLAKSINKIRENYQADWKSKEM-RIRQRAVALYFIDKLALRAGNEKDEDQ 571
+D +K+E LA+ + K+RE + D S+ + R R A AL ID R G E D+
Sbjct: 62 RDEEKHERVLALARKLPKLREAVREDLDSRGLKRERVLAGALRMIDLGVFRTGGESYADE 121
Query: 572 ADTVGCCSLRVEHIQLHEE 590
T G +L EH++L +E
Sbjct: 122 HGTHGVATLLCEHVELRDE 140
>gi|393795530|ref|ZP_10378894.1| 2-alkenal reductase, partial [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 148
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 10/124 (8%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ + + + EE+ +A+ + Y + F NF D+ K++ K ++S D
Sbjct: 28 GENVDIDLNQEEMIYQWAKKKDTPYAQDKVFQKNFTSDFAKTLPAK----FKNISYEDID 83
Query: 65 KMHAYFVQKSEE--RKAMSKEEKKKI----KDENEAITKEYGVCTIDGHKEKIGNFRIEP 118
HAY + E+ R+ M+KEEKK + K E + ++YG +DG + + N+ EP
Sbjct: 84 FSHAYKIVDKEKDIREMMTKEEKKALALKRKQLREKLVQKYGKAIMDGKEVDVANYMAEP 143
Query: 119 PGLF 122
PG+F
Sbjct: 144 PGIF 147
>gi|406964641|gb|EKD90350.1| hypothetical protein ACD_31C00008G0022 [uncultured bacterium]
Length = 344
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 95/205 (46%), Gaps = 24/205 (11%)
Query: 204 KYETARKLAKSINKIRENYQADWKSKEM-RIRQRAVALYFIDKLALRAGNEKDEDQADTV 262
K+ A+S+ KIR + D + E+ R + A ++ ++ +R GNE+ ++
Sbjct: 103 KFSKMVPFAQSLPKIRSKVRRDMEVSELLRKKVLATIIWLLEHTFIRVGNEEYAKDNNSF 162
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEV--PVEKRVFK------NLQLF 314
G +LR H+ + K V F+F GK I + EV P+ R K QLF
Sbjct: 163 GLTTLRNRHVDVSGIK------VRFEFKGKSGIEHLVEVSNPIVARTLKKCIELPGYQLF 216
Query: 315 -VENKKGSDDLFDRLNTSVLNKHLSELM-EGLTAKVFRTYNASITLQQQLNELMDPDFSE 372
+++G + D + +N++L E+ E TAK FRT+ ++ L+ L E
Sbjct: 217 QCIDEEGKRHVVD---SEDVNEYLHEITKEETTAKEFRTWGGTVLGATTLHSLGS---FE 270
Query: 373 AEKILAYNRANRAVAVLCNHQRSVP 397
E+ L N A+ V + +H R+ P
Sbjct: 271 DEQGLKQNIAS-TVKTVASHLRNTP 294
>gi|284990617|ref|YP_003409171.1| DNA topoisomerase [Geodermatophilus obscurus DSM 43160]
gi|284063862|gb|ADB74800.1| DNA topoisomerase [Geodermatophilus obscurus DSM 43160]
Length = 338
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/275 (23%), Positives = 114/275 (41%), Gaps = 48/275 (17%)
Query: 157 PPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSK--------LKGEKDWQKYETA 208
PP WK+V W+ W G ++ ++ + + + +D +K+E
Sbjct: 46 PPA--WKDV-------WICPWP---NGHIQATGVDAAGRRQYRYHEEWRARRDAEKHERV 93
Query: 209 RKLAKSINKIRENY-QADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSL 267
++A + +R+ QA R R A A+ +D A R G+E+ + T G +L
Sbjct: 94 LEIAHQLPDVRDAVVQAIRGGGLTRERVLAAAVRLLDLGAFRVGSEQYAEDNGTYGLATL 153
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP------VEKRVFKN-------LQLF 314
R +H+++ E+ V F + K I E+ V + + K L +
Sbjct: 154 RRDHVRVRGEQ------VFFSYNAKGGIERELELTDKPTADVVRELLKRPEEGEELLGYW 207
Query: 315 VENKKGSDDLFDRLNTSVLNKHLSELMEG-LTAKVFRTYNASITLQQQLNELMDPDFSEA 373
V+ G D +T V N +L E+ + +TAK FRT+NA++ + L +P A
Sbjct: 208 VQGPDGERVWHDVTSTEV-NAYLKEISDAEITAKDFRTWNATVLMATTLAAAPEPATRTA 266
Query: 374 EKIL---AYNRANRAVA---VLCNHQRSVPKSHDK 402
K + AY R + + +C P+ D+
Sbjct: 267 RKRVLKEAYERVSETLGNTPAVCKASYVDPRVVDR 301
>gi|383780179|ref|YP_005464745.1| hypothetical protein AMIS_50090 [Actinoplanes missouriensis 431]
gi|381373411|dbj|BAL90229.1| hypothetical protein AMIS_50090 [Actinoplanes missouriensis 431]
Length = 331
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 122/272 (44%), Gaps = 39/272 (14%)
Query: 143 IIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDW 202
+I +D + P P GH Q T + + G+ +Y+ + + ++D
Sbjct: 45 VIPPAWQDVWISPDPRGHI--------QATGV-----DAAGRKQYLY---HPQWRRQQDQ 88
Query: 203 QKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVA--LYFIDKLALRAGNEK--DEDQ 258
K++ A ++A+ + ++RE AD R+R +A + +D R G+++ D ++
Sbjct: 89 AKFDHALEIAERLPEVRERLCADLTGARGLTRERVLAAIVRMLDMGMFRIGSDQYADREE 148
Query: 259 ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENK 318
+ G +LR +H++ K V +F GK + + V + V L+ +
Sbjct: 149 DPSFGLSTLRPDHVRT------KGGCVLLEFRGKSGVDHATTVG-DGEVCAVLRDLKRRR 201
Query: 319 KGSDDLF---DR-------LNTSVLNKHLSELM-EGLTAKVFRTYNASITLQQQLNELMD 367
+G LF DR + +N +L ++ E +TAK FRT++ ++ +L E
Sbjct: 202 RGEQRLFAYWDRASRRWQEIRADAINDYLRDISGEQMTAKDFRTWHGTVKAATELAE-AG 260
Query: 368 PDFSEAEKILAYNRANRAVAVLCNHQRSVPKS 399
P ++A++ A A R VA + + +V ++
Sbjct: 261 PQPTKAKRQKAVANAMREVAGMLGNTPTVARN 292
>gi|119714975|ref|YP_921940.1| hypothetical protein Noca_0728 [Nocardioides sp. JS614]
gi|119535636|gb|ABL80253.1| conserved hypothetical protein [Nocardioides sp. JS614]
Length = 334
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 113/269 (42%), Gaps = 30/269 (11%)
Query: 197 KGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRI-RQRAVALYFIDKLALRAGNEKD 255
+ +D +K++ + K++ + RE D + M + R A A+ +D R GN+
Sbjct: 83 RARRDAEKFDRMLEFGKALTRARELVVRDLGLEGMPLERACAAAVRLLDLGYFRIGNDVY 142
Query: 256 EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFV 315
D + G +L H++ H+++ + F F+GK + + E+ + V + + +
Sbjct: 143 SDAHGSFGLTTLERRHVRRHQDR------LVFAFVGKSGVEHRIEID-DAVVIEAIDVMR 195
Query: 316 ENKKGSDDLFDRLNTSVLNKHLSELME-------GL--TAKVFRTYNASITLQQQLNELM 366
+ L N L EL+ GL TAK FRT++A++ L E
Sbjct: 196 RRRSADLRLLAYKNGRGWRSVLPELVNDYVRSSTGLEATAKDFRTWHATVLAAAALAETP 255
Query: 367 DPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA-ERAL 425
+P S A + A A + VA + ++ +S S +V DA E
Sbjct: 256 EPGRSAASRKRAVAGAMKEVASFLGNTPTLARS------------SYVDPRVVDAYEEGR 303
Query: 426 KDAKKAGESKAMTDKKKTALGRLKEQLLK 454
A+ G + D+++ AL R +LLK
Sbjct: 304 TIARATGRAYDSPDERQAALERATLRLLK 332
>gi|379736498|ref|YP_005330004.1| Topoisomerase IB [Blastococcus saxobsidens DD2]
gi|378784305|emb|CCG03973.1| Topoisomerase IB [Blastococcus saxobsidens DD2]
Length = 328
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 103/239 (43%), Gaps = 39/239 (16%)
Query: 157 PPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSK--------LKGEKDWQKYETA 208
PP WK+V W+ W G ++ ++ + + + +D +K+E
Sbjct: 39 PPA--WKDV-------WICPWP---NGHIQATGVDAAGRRQYRYHDAWRARRDAEKHERV 86
Query: 209 RKLAKSINKIRENYQADWKSKEM-RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSL 267
++A+ + +R+ A +++ + R R A A+ +D A R G+E+ ++ T G +L
Sbjct: 87 LEIAQQLPDVRDAVVAALRTRGLNRERVLAAAVRLLDLGAFRVGSEQYVEENGTYGLATL 146
Query: 268 RVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKG------- 320
H+ + E+ + + K I E+ ++ ++ +E G
Sbjct: 147 ERAHVSVRGER------TFYSYTAKGGIEREVEI-TDRPTATVVRQLLERPAGVGEELLA 199
Query: 321 ---SDDLFDRLNTSVLNKHLSELMEG-LTAKVFRTYNASITLQQQLNELMDPDFSEAEK 375
D + + ++ +N +L E+ +TAK FRT+NA++ + L E+ P A K
Sbjct: 200 YQTDDGEWHDVTSAEINSYLKEISGAEITAKDFRTWNATVMMAATLAEVPPPATKTARK 258
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,566,917,258
Number of Sequences: 23463169
Number of extensions: 400365242
Number of successful extensions: 1585352
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 1226
Number of HSP's that attempted gapping in prelim test: 1573928
Number of HSP's gapped (non-prelim): 8714
length of query: 618
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 469
effective length of database: 8,863,183,186
effective search space: 4156832914234
effective search space used: 4156832914234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 80 (35.4 bits)