BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17743
(618 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P30189|TOP1_DROME DNA topoisomerase 1 OS=Drosophila melanogaster GN=Top1 PE=1 SV=1
Length = 972
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/482 (72%), Positives = 399/482 (82%), Gaps = 9/482 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS++ EE ATFYA+M+ H+Y TKE FN NF KD+RKSMT +ER +I D KC+F+
Sbjct: 467 GKPLELSEETEEAATFYAKMLNHDYCTKEVFNNNFFKDFRKSMTPREREIIKDFRKCNFQ 526
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE+RKA SKEEK K+ENEA+ KE+G C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 527 EMFNYFQAESEKRKAASKEEKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRG 586
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+QA D+ INC KDSKVP PPPG +WKEVRHDN VTWLASW ENVQGQ
Sbjct: 587 RGEHPKMGMIKRRIQASDVSINCGKDSKVPSPPPGSRWKEVRHDNTVTWLASWIENVQGQ 646
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 647 VKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFID 706
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E +GK VV FDF GKDSIRYYNEV VE
Sbjct: 707 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVE 766
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+E+KK DDLFDRLNT VLN+HL ELMEGLTAKVFRTYNAS TLQ QL+
Sbjct: 767 KRVFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDL 826
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L DP + EK+LAYNRANRAVA+LCNHQRSVPKSH+KSM NLKEKI KR+ ++ E
Sbjct: 827 LTDPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAIEKCE-- 884
Query: 425 LKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISV 484
E + +KK L RL++QL KLE+QETD++ENKTIALGTSKLNYLDPRISV
Sbjct: 885 -------SEYHSRDEKKGKQLERLRDQLKKLELQETDRDENKTIALGTSKLNYLDPRISV 937
Query: 485 TW 486
W
Sbjct: 938 AW 939
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/108 (85%), Positives = 100/108 (92%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW ENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 632 TVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSK 691
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E
Sbjct: 692 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKE 739
Score = 35.8 bits (81), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KI+NKTQR KF WA+ MA ++ F
Sbjct: 949 KIFNKTQRTKFLWAVHMADENYRF 972
>sp|P11387|TOP1_HUMAN DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2
Length = 765
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 244 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 303
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 304 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 363
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 364 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 423
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 424 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 483
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 484 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 543
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 544 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 603
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 604 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 663
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 664 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 723
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 724 LDPRITVAWCKKW 736
Score = 189 bits (479), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 410 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 469
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 470 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 519
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 742 KIYNKTQREKFAWAIDMADEDYEF 765
>sp|Q7YR26|TOP1_CHLAE DNA topoisomerase 1 OS=Chlorocebus aethiops GN=TOP1 PE=2 SV=1
Length = 767
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/493 (71%), Positives = 410/493 (83%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++E RK MSKEEK KIK+ENE + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 606 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 189 bits (479), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 19/24 (79%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDMA D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMADEDYEF 767
>sp|Q04750|TOP1_MOUSE DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2
Length = 767
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 406/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT E+ IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNTITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDF GKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 606 ELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 189 bits (479), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 40.4 bits (93), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDM D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMTDEDYEF 767
>sp|Q07050|TOP1_CRIGR DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1
Length = 767
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/493 (71%), Positives = 406/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT E+ VIT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNVITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKDQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTV CCSLRVEHI LH E DG+ YVV FDF GKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVSCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 606 ELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 186 bits (472), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/110 (77%), Positives = 97/110 (88%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTV CCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVSCCSLRVEHINLHPELD 521
Score = 40.4 bits (93), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDM D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMTDEDYEF 767
>sp|Q9WUL0|TOP1_RAT DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1
Length = 767
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/493 (71%), Positives = 406/493 (82%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT E+ IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNTITNLSKCDFT 305
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +SE RK MSKEEK KIK+ENE + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDF GKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA +
Sbjct: 606 ELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARK 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ RL+EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 189 bits (479), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 98/110 (89%), Gaps = 1/110 (0%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 40.4 bits (93), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR KF WAIDM D+ F
Sbjct: 744 KIYNKTQREKFAWAIDMTDEDYEF 767
>sp|P41512|TOP1_XENLA DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1
Length = 829
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/493 (68%), Positives = 403/493 (81%), Gaps = 7/493 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G +KLS AEE+ATF+A+M++HEYTTK+ F NF KDW+K MT ER +IT+LSKCDF
Sbjct: 300 GNLVKLSPKAEEVATFFAKMLDHEYTTKDIFRKNFFKDWKKEMTTDERNLITNLSKCDFN 359
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF ++SE RK M+KEEK KIK ENE + +EYG C +D HKE+I NFRIEPPGLFRG
Sbjct: 360 AMSLYFKEQSEARKNMTKEEKLKIKAENERLLQEYGYCIMDNHKERIANFRIEPPGLFRG 419
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMGKLK+R+ EDIIINCSKDSK+P P GHKWKEVRHD +VTWL SWTEN+QG
Sbjct: 420 RGDHPKMGKLKKRIMPEDIIINCSKDSKIPVAPAGHKWKEVRHDGKVTWLVSWTENIQGS 479
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L + KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 480 IKYIMLNPSSRIKGEKDWQKYETARRLKMCVEKIRNTYKEDWKSKEMKVRQRAVALYFID 539
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI L +E DG+ +VV FDF GKDSIRYYN+VPV
Sbjct: 540 KLALRAGNEKEEGETADTVGCCSLRVEHINLFQELDGQEFVVEFDFPGKDSIRYYNKVPV 599
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL +LMEGLTAKVFRTYNASITLQQQL+
Sbjct: 600 EKRVFKNLQLFMENKQPDDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLD 659
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL + D + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 660 ELTNSDDNVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQGKIDAKKDQLADARR 719
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
K AK + ++K + + KK A+ R++EQL+KLEVQ TD+EENK IALGTSKLNY
Sbjct: 720 EFKSAKADAKVRRDEKTKKLVESKKKAVQRIEEQLMKLEVQATDREENKQIALGTSKLNY 779
Query: 478 LDPRISVTWLASW 490
LDPRISV W +
Sbjct: 780 LDPRISVAWCKKY 792
Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/191 (52%), Positives = 126/191 (65%), Gaps = 16/191 (8%)
Query: 404 MGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQ-ETDK 462
M N KE+I+N R + R D K +G+LK++++ ++ K
Sbjct: 399 MDNHKERIANFRIEPPGLFRGRGDHPK--------------MGKLKKRIMPEDIIINCSK 444
Query: 463 EENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETAR 522
+ +A K + VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR
Sbjct: 445 DSKIPVAPAGHKWKEVRHDGKVTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETAR 504
Query: 523 KLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLR 581
+L + KIR Y+ DWKSKEM++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLR
Sbjct: 505 RLKMCVEKIRNTYKEDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLR 564
Query: 582 VEHIQLHEEKD 592
VEHI L +E D
Sbjct: 565 VEHINLFQELD 575
>sp|Q969P6|TOP1M_HUMAN DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2
SV=1
Length = 601
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/489 (65%), Positives = 389/489 (79%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ ++LS AEE+ATFY RM++HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 80 GRPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFT 139
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +S+EEK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRG
Sbjct: 140 EIHRYFVDKAAARKVLSREEKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRG 199
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ
Sbjct: 200 RGDHPKMGMLKRRITPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNS 259
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 260 IKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 319
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK D + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPV
Sbjct: 320 KLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPV 379
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNLQLF+ENK DDLFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL
Sbjct: 380 EKPVYKNLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLR 439
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A
Sbjct: 440 ALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARA 499
Query: 424 ALKD------AKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A+ G+S+++ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNY
Sbjct: 500 ELRRARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNY 559
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 560 LDPRISIAW 568
Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 245 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 304
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 305 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 355
Score = 36.2 bits (82), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIY+KTQR +F WA+ MA DF F
Sbjct: 578 KIYSKTQRERFAWALAMAGEDFEF 601
>sp|A9Q1D5|TOP1M_PANTR DNA topoisomerase I, mitochondrial OS=Pan troglodytes GN=TOP1MT
PE=2 SV=1
Length = 601
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/489 (65%), Positives = 388/489 (79%), Gaps = 7/489 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS AEE+ATFY RM+ HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 80 GKPVRLSVAAEEVATFYGRMLGHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFT 139
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ RK +S+EEK+K+K+E E + +E+G C +DGH+EKIGNF+IEPPGLFRG
Sbjct: 140 EIHRYFVDKAAARKVLSREEKQKLKEEAEKLQREFGYCILDGHQEKIGNFKIEPPGLFRG 199
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ
Sbjct: 200 RGDHPKMGMLKRRIMPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNS 259
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 260 IKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 319
Query: 245 KLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK D + ADTVGCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPV
Sbjct: 320 KLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPV 379
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNLQLF+E+K D+LFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL
Sbjct: 380 EKPVYKNLQLFMESKGPRDNLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLR 439
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A
Sbjct: 440 ALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARA 499
Query: 424 ALKD------AKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNY 477
L+ A+ G+S+++ +KK+ L +L+EQL +L VQ TDKEENK +ALGTSKLNY
Sbjct: 500 ELRRARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNY 559
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 560 LDPRISIAW 568
Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 81/111 (72%), Positives = 95/111 (85%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 245 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 304
Query: 543 EMRIRQRAVALYFIDKLALRAGNEK-DEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK D + ADTVGCCSLRVEH+QLH E D
Sbjct: 305 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 355
Score = 36.2 bits (82), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIY+KTQR +F WA+ MA DF F
Sbjct: 578 KIYSKTQRERFAWALAMAGEDFEF 601
>sp|Q6IM78|TOP1M_RAT DNA topoisomerase I, mitochondrial OS=Rattus norvegicus GN=Top1mt
PE=2 SV=1
Length = 593
Score = 627 bits (1616), Expect = e-178, Method: Compositional matrix adjust.
Identities = 301/488 (61%), Positives = 379/488 (77%), Gaps = 6/488 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS AEE+ATFY +M+ E TTKE F NF DW+K MT +ER +IT L KCDF
Sbjct: 73 GKPVRLSLAAEEVATFYGKMLHLECTTKEVFRRNFFSDWQKEMTAEERKLITHLDKCDFS 132
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H +F++++E R+ + +E+K+K+K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 133 EIHRHFMERAEARRTLPREQKQKLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRG 192
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV ED++INCS+DSK+P PP GH+WKEVR DN V WLA+W EN+Q
Sbjct: 193 RGDHPKMGMLKRRVMPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVMWLAAWVENIQNS 252
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYI+LNPSSK KGE DWQKYE AR+L ++KIR YQADWKS EM+ RQ AVALYFID
Sbjct: 253 FKYIILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSPEMKKRQLAVALYFID 312
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALR GNEK+E + ADTVGCCSLRVEH++LH DG+ +VV DFLGKDSIRY N V V
Sbjct: 313 KLALRTGNEKEEGETADTVGCCSLRVEHVRLHTPADGQEHVVELDFLGKDSIRYKNHVTV 372
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK VF+NLQ F+E+K DDLFD L TS LNKHL +LMEGLTAKVFRTYNASITLQ+QL
Sbjct: 373 EKLVFQNLQHFMEDKDPRDDLFDALTTSSLNKHLQDLMEGLTAKVFRTYNASITLQEQLR 432
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S K+LAYNRANRAVAVLCNHQR++PK+ ++SM L++KI K+ QV +A+
Sbjct: 433 VLTRAEDSLTCKVLAYNRANRAVAVLCNHQRAIPKTFEESMQTLQKKIETKKAQVAEAQV 492
Query: 424 ALK----DAKKAGESKAMTD-KKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
L+ D + G+SK+ + +K+ L +L+EQL +L + TDKEENK +ALGT+KLNYL
Sbjct: 493 ELQKAETDLRMRGDSKSKSFLQKQQRLLKLEEQLARLCTKATDKEENKQVALGTAKLNYL 552
Query: 479 DPRISVTW 486
DPRIS+ W
Sbjct: 553 DPRISIAW 560
Score = 166 bits (419), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 77/111 (69%), Positives = 89/111 (80%), Gaps = 1/111 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA+W EN+Q KYI+LNPSSK KGE DWQKYE AR+L ++KIR YQADWKS
Sbjct: 238 TVMWLAAWVENIQNSFKYIILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSP 297
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EM+ RQ AVALYFIDKLALR GNEK+E + ADTVGCCSLRVEH++LH D
Sbjct: 298 EMKKRQLAVALYFIDKLALRTGNEKEEGETADTVGCCSLRVEHVRLHTPAD 348
Score = 36.2 bits (82), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR +F WA + A DF F
Sbjct: 570 KIYNKTQRERFAWAFNQAGEDFEF 593
>sp|Q8R4U6|TOP1M_MOUSE DNA topoisomerase I, mitochondrial OS=Mus musculus GN=Top1mt PE=2
SV=1
Length = 593
Score = 625 bits (1611), Expect = e-178, Method: Compositional matrix adjust.
Identities = 301/488 (61%), Positives = 377/488 (77%), Gaps = 6/488 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS AEE+ATFY +M+ E T+KE F NF DWRK MT +ER +IT L KCDF
Sbjct: 73 GKPLKLSLAAEEVATFYGKMLHLECTSKEVFRRNFFSDWRKEMTPEERRLITHLDKCDFT 132
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H +F++++E R+ + +E+K+K+K+E E + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 133 EIHKHFLERAEARRTLPREQKQKLKEEAEKLQQEFGYCVLDGHREKIGNFKTEPPGLFRG 192
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV ED++INCS+DSK+P PP GH+WKEVR DN V WLA+W E++Q
Sbjct: 193 RGDHPKMGMLKRRVMPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVMWLAAWVEHIQNS 252
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY++LNPSSK KGE DWQKYE AR+L ++KIR YQADWKS EM+ RQ AVALYFID
Sbjct: 253 FKYVILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSPEMKKRQLAVALYFID 312
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALR GNEK+E + ADTVGCCSLRVEHI+LH G+ +VV DFLGKDSIRY N V V
Sbjct: 313 KLALRTGNEKEEGETADTVGCCSLRVEHIRLHAPAGGQEHVVELDFLGKDSIRYKNHVTV 372
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK VF+NLQ F+E+K DDLFD L TS LNKHL +LMEGLTAKVFRTYNAS+TLQ+QL
Sbjct: 373 EKLVFQNLQHFMEDKDPRDDLFDALTTSSLNKHLQDLMEGLTAKVFRTYNASVTLQEQLR 432
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S K+LAYNRANRAVAVLCNHQR+VPK+ +KSM L++KI K+ QV +A+
Sbjct: 433 VLTRAEDSVTCKVLAYNRANRAVAVLCNHQRAVPKTFEKSMQTLQKKIETKKAQVAEAQV 492
Query: 424 ALK----DAKKAGESKAMTD-KKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYL 478
L+ D + G+SK + +K+ L +L+EQL +L + TDKEENK +ALGT+KLNYL
Sbjct: 493 ELQKAETDLRMRGDSKPKSFLQKQRRLLKLEEQLARLCAKATDKEENKQVALGTAKLNYL 552
Query: 479 DPRISVTW 486
DPRIS+ W
Sbjct: 553 DPRISIAW 560
Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/107 (70%), Positives = 88/107 (82%), Gaps = 1/107 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA+W E++Q KY++LNPSSK KGE DWQKYE AR+L ++KIR YQADWKS
Sbjct: 238 TVMWLAAWVEHIQNSFKYVILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSP 297
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLH 588
EM+ RQ AVALYFIDKLALR GNEK+E + ADTVGCCSLRVEHI+LH
Sbjct: 298 EMKKRQLAVALYFIDKLALRTGNEKEEGETADTVGCCSLRVEHIRLH 344
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 17/24 (70%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KIYNKTQR +F WA + A DF F
Sbjct: 570 KIYNKTQRERFAWAFNQAGEDFEF 593
>sp|O17966|TOP1_CAEEL DNA topoisomerase 1 OS=Caenorhabditis elegans GN=top-1 PE=2 SV=1
Length = 806
Score = 615 bits (1586), Expect = e-175, Method: Compositional matrix adjust.
Identities = 324/491 (65%), Positives = 392/491 (79%), Gaps = 13/491 (2%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GG++MKL+ + EEIA FYA +++HEY+TKEAFN NFMKDWRK MT +ER I DL KCDF
Sbjct: 285 GGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFNKNFMKDWRKVMTVEERERIHDLKKCDF 344
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
R + AY ++ E RKAM+KEEK KIK+E EA K YG+ IDGH++K+ NFRIEPPG+FR
Sbjct: 345 RAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVKIYGIAIIDGHRQKVANFRIEPPGVFR 404
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPKMG +K+R+ ED+IINC KD+++P PPPGHKWKEVRHDN VTWL SWTE+V G
Sbjct: 405 GRGGHPKMGLIKKRIMPEDVIINCGKDTEIPKPPPGHKWKEVRHDNTVTWLCSWTESVLG 464
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
Q KYIMLNPSSK+KGEKD++KYETAR+L K I IRE Y D+KSKEMR+RQRA ALYFI
Sbjct: 465 QNKYIMLNPSSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSKEMRVRQRATALYFI 524
Query: 244 DKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQL-------HEEKDGKPYVVCFDFLGKDSI 295
DKLALRAGNEKD D+ ADTVGCCSLRVEHI+L ++K K +VV FDFLGKDSI
Sbjct: 525 DKLALRAGNEKDVDEAADTVGCCSLRVEHIKLFDSAKLNEDDKKEKEFVVEFDFLGKDSI 584
Query: 296 RYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNAS 355
RY+N V VEKRV+KNL++F+E K SDDLFDRL+T+ LN HL LM+GLT KVFRTYNAS
Sbjct: 585 RYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDRLDTATLNDHLRSLMDGLTVKVFRTYNAS 644
Query: 356 ITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKR 415
ITLQ+QL +L +P + A KIL+YNRANR VA+LCNHQR+V K D+SM L++KI +K+
Sbjct: 645 ITLQEQLIKLTNPKDNVAAKILSYNRANRQVAILCNHQRAVSKGFDESMQKLEQKIKDKK 704
Query: 416 KQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKL 475
K+VK+AE ALK A+ A + KA + RLKEQL KL++ TDK+ENK IALGTSKL
Sbjct: 705 KEVKEAEAALKSARGAEKEKA-----QKKYDRLKEQLKKLKISRTDKDENKQIALGTSKL 759
Query: 476 NYLDPRISVTW 486
NY+DPRI+V W
Sbjct: 760 NYIDPRITVAW 770
Score = 172 bits (436), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 83/108 (76%), Positives = 94/108 (87%), Gaps = 1/108 (0%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWTE+V GQ KYIMLNPSSK+KGEKD++KYETAR+L K I IRE Y D+KSK
Sbjct: 451 TVTWLCSWTESVLGQNKYIMLNPSSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSK 510
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHE 589
EMR+RQRA ALYFIDKLALRAGNEKD D+ ADTVGCCSLRVEHI+L +
Sbjct: 511 EMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGCCSLRVEHIKLFD 558
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 595 KIYNKTQRAKFRWAIDMATA---DFVF 618
K++ KT R KFRWAIDM + ++VF
Sbjct: 780 KVFTKTHREKFRWAIDMTNSSDEEYVF 806
>sp|Q54RC3|TOP1_DICDI DNA topoisomerase 1 OS=Dictyostelium discoideum GN=top1 PE=3 SV=1
Length = 893
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/531 (46%), Positives = 329/531 (61%), Gaps = 54/531 (10%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KL+ EE+ATFYA +E ++ K+AF NF K+++ +T +++ ++ + KCDF
Sbjct: 337 GKVVKLTPKQEEVATFYANYLETDHVKKQAFKDNFFKEFKGLLTSEQKEIVKKMDKCDFS 396
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+H + K E+RKA SKEEK E + I +++G TIDG KEK+GN+ IEPPGLF G
Sbjct: 397 HIHTHLKTKKEQRKARSKEEKDAETAEKKKIQEKHGFATIDGFKEKVGNYMIEPPGLFLG 456
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQG 183
RG+HPK G LK+R+ D+ +N + +PP P PG KWKE+ H+N VTWLA W E+V G
Sbjct: 457 RGQHPKTGMLKQRIMPSDVTLNIGEGEVIPPSPIPGEKWKEIVHNNTVTWLAFWRESVNG 516
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
KY+ L PSSK+KG+ D +K+E AR L I IR+ YQ + + RQ AVALY I
Sbjct: 517 GFKYVWLAPSSKIKGQADRKKFEVARGLKNCIGDIRKGYQKSFNDESTEKRQLAVALYLI 576
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D LALR GNEK EDQADTVGCCSLRVEHI+L + DFLGKDS+RY N V +
Sbjct: 577 DFLALRVGNEKGEDQADTVGCCSLRVEHIKLESNN-----TITLDFLGKDSMRYLNTVQI 631
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
+ +K L+ FV+ KK +D LFD L + LN HL + M GL+AKVFRTYNASITLQ++L+
Sbjct: 632 REDAYKVLKTFVKGKKPTDLLFDSLTVTQLNNHLKKQMTGLSAKVFRTYNASITLQKELD 691
Query: 364 ELMDPDF-SEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRK------ 416
++ +F S EKIL YNR NR VA+LCNHQ++ PK+ ++M + EKI R
Sbjct: 692 KMDTKEFQSIDEKILFYNRCNREVAILCNHQKAPPKNLAETMSKIDEKIQELRDLQDLCR 751
Query: 417 --------------QVKDAERALK-----------------------DAKKAGE-SKAMT 438
+ ++AER K D K A E S+ +
Sbjct: 752 IKIGKTPKSQQEDIESREAERLPKLIQLAITNKKDKDKEKTDKEISFDVKAAFEKSRTLP 811
Query: 439 DKK---KTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTW 486
D K K + + +EQ+ K E+ +T K+E KT+ALGTSK+NYLDPRI+V W
Sbjct: 812 DAKGKIKEKIAKYEEQIKKQEILKTGKDELKTVALGTSKINYLDPRITVAW 862
Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 75/105 (71%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W E+V G KY+ L PSSK+KG+ D +K+E AR L I IR+ YQ + +
Sbjct: 503 TVTWLAFWRESVNGGFKYVWLAPSSKIKGQADRKKFEVARGLKNCIGDIRKGYQKSFNDE 562
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ AVALY ID LALR GNEK EDQADTVGCCSLRVEHI+L
Sbjct: 563 STEKRQLAVALYLIDFLALRVGNEKGEDQADTVGCCSLRVEHIKL 607
>sp|P07799|TOP1_SCHPO DNA topoisomerase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=top1 PE=1 SV=2
Length = 814
Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust.
Identities = 223/409 (54%), Positives = 279/409 (68%), Gaps = 8/409 (1%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE-KERAVITDLSKCDF 63
G + L +AEE+A FYA M+E ++ F NF +D+ K E I + SKCDF
Sbjct: 222 GNPVNLPPEAEEVAGFYAAMLETDHAKNPVFQDNFFRDFLKVCDECNFNHNIKEFSKCDF 281
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
+M +F QK EE+K+M KE+KK IK + + ++Y C +DG KEK+GNFRIEPPGLFR
Sbjct: 282 TQMFHHFEQKREEKKSMPKEQKKAIKQKKDEEEEKYKWCILDGRKEKVGNFRIEPPGLFR 341
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPK G LKRRV E I IN + VP P PGH+W EV+HDN VTWLA+W EN+
Sbjct: 342 GRGSHPKTGSLKRRVYPEQITINIGEGVPVPEPLPGHQWAEVKHDNTVTWLATWHENINN 401
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
VKY+ L S LKG+ D +KYE +RKL I+ IR+ Y+ D KS+ RQR A+Y I
Sbjct: 402 NVKYVFLAAGSSLKGQSDLKKYEKSRKLKDYIDDIRKGYRKDLKSELTVERQRGTAMYLI 461
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D ALRAGNEK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIRYYNEV V
Sbjct: 462 DVFALRAGNEKGEDEADTVGCCSLRYEHVTLKP-----PRTVVFDFLGKDSIRYYNEVEV 516
Query: 304 EKRVFKNLQLFVENKKGSDDL-FDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
+ +VFKNL++F K DL FDRL+T+ LNK+L+ LM+GL+AKVFRTYNAS T+ ++L
Sbjct: 517 DPQVFKNLKIFKRPPKKEGDLIFDRLSTNSLNKYLTSLMDGLSAKVFRTYNASYTMAEEL 576
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+ M + + A+KIL YNRANR VA+LCNHQRSV K+HD M E+I
Sbjct: 577 KK-MPKNLTLADKILFYNRANRTVAILCNHQRSVTKNHDVQMERFAERI 624
>sp|P04786|TOP1_YEAST DNA topoisomerase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=TOP1 PE=1 SV=2
Length = 769
Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/405 (52%), Positives = 276/405 (68%), Gaps = 11/405 (2%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLSK 60
GK + L AEE+A F+A ++E ++ F NF D+ + + E + I + S+
Sbjct: 172 GKPVDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSR 231
Query: 61 CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KM YF + E++K ++ +EKK+I+ E E ++Y C +DG +E++GNF++EPP
Sbjct: 232 CDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPD 291
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV EDI++N SKD+ VPP P GHKW E+RHDN V WLA W EN
Sbjct: 292 LFRGRGAHPKTGKLKRRVNPEDIVLNLSKDAPVPPAPEGHKWGEIRHDNTVQWLAMWREN 351
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ L +S LKG+ D++K+E AR+L I+ IR +Y + KSK M RQ+AVA+
Sbjct: 352 IFNSFKYVRLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAI 411
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y E
Sbjct: 412 YLIDVFALRAGGEKSEDEADTVGCCSLRYEHVTLK-----PPNTVIFDFLGKDSIRFYQE 466
Query: 301 VPVEKRVFKNLQLF-VENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+K+VFKNL +F K+ LFDRL+ S+LNK+L M GLTAKVFRTYNAS T+Q
Sbjct: 467 VEVDKQVFKNLTIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQ 526
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSM 404
QL+ L+ S AEKIL YN ANR VA+LCNHQR+V K H +++
Sbjct: 527 DQLD-LIPNKGSVAEKILKYNAANRTVAILCNHQRTVTKGHAQTV 570
>sp|P30181|TOP1_ARATH DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1
Length = 916
Score = 424 bits (1091), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/495 (47%), Positives = 321/495 (64%), Gaps = 22/495 (4%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ + EE+AT +A M E +Y TK F NF DWR+ + +K VI L CDF
Sbjct: 396 GKPVDLTIEQEEVATMFAVMRETDYYTKPQFRENFWNDWRRLLGKKH--VIQKLDDCDFT 453
Query: 65 KMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + +++ E++K MS EEKK +K+E ++Y +DG KEKIGNFR+EPPGLFRG
Sbjct: 454 PIYEWHLEEKEKKKQMSTEEKKALKEEKMKQEEKYMWAVVDGVKEKIGNFRVEPPGLFRG 513
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP-PPPGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMGKLK+R+ +I +N K + +P P G +WKEV+HDN VTWLA W + +
Sbjct: 514 RGEHPKMGKLKKRIHPCEITLNIGKGAPIPECPIAGERWKEVKHDNTVTWLAFWADPINP 573
Query: 184 -QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L S LKG D +KYE AR L I+ IR Y ++ +K++++RQ AVA Y
Sbjct: 574 KEFKYVFLGAGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVKMRQIAVATYL 633
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+V +++ P + FDFLGKDSI+Y N V
Sbjct: 634 IDKLALRAGNEKDDDEADTVGCCTLKVGNVECIP-----PNKIKFDFLGKDSIQYVNTVE 688
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+K + F K +DDLFD L+TS LN HL EL+ GLTAKVFRTYNASITL + L
Sbjct: 689 VEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEML 748
Query: 363 N-ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
+ E D D + +KI+ Y +AN+ VA++CNHQR+V K+H + L +I ++ +K+
Sbjct: 749 SQETKDGDVT--QKIVVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKEL 806
Query: 422 ERALKDAKKAGESKAMTDKKKTAL-------GRLKEQLLKLEVQETD---KEENKTIALG 471
+ L AKK +D KK ++ +Q K+E E D KE+ KT+ALG
Sbjct: 807 KTNLDRAKKGKPPLEGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALG 866
Query: 472 TSKLNYLDPRISVTW 486
TSK+NYLDPRI+V W
Sbjct: 867 TSKINYLDPRITVAW 881
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 75/105 (71%), Gaps = 1/105 (0%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L S LKG D +KYE AR L I+ IR Y ++ +
Sbjct: 560 TVTWLAFWADPINPKEFKYVFLGAGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTA 619
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K++++RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 620 KDVKMRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 664
>sp|Q00313|TOP1_CANAX DNA topoisomerase 1 OS=Candida albicans GN=TOP1 PE=3 SV=1
Length = 778
Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/409 (51%), Positives = 286/409 (69%), Gaps = 9/409 (2%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKER--AVITDLSKCDF 63
K + L +AEE+A FY M+E ++ F NF D+ + + E I K DF
Sbjct: 185 KPVNLPPEAEEVAGFYGAMLETDHAKNPVFQKNFFNDFLEVLKECGGCGVEIKKFEKLDF 244
Query: 64 RKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
KM+A+F + EE+KAMS+EEKK+IK+E E + Y C ++G KE +GNFRIEPPGLFR
Sbjct: 245 SKMYAHFEKLREEKKAMSREEKKRIKEEKEKEEEPYRTCYLNGRKELVGNFRIEPPGLFR 304
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPK GKLKRRV +E + +N KD+K+P PP GH+W E+RHDN+VTWLA W EN+
Sbjct: 305 GRGAHPKTGKLKRRVVSEQVTLNLGKDAKIPEPPAGHQWGEIRHDNEVTWLAMWKENISD 364
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
+KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++M+ RQ A A+Y I
Sbjct: 365 SLKYVRFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLI 424
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D ALRAG EK ED+ADTVGCCSLR EH+ L P V FD LGKDSIR+Y EV V
Sbjct: 425 DVFALRAGGEKGEDEADTVGCCSLRYEHVTLKP-----PNKVIFDLLGKDSIRFYQEVEV 479
Query: 304 EKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
+K+VFKNL++F ++ K+ DDLFDR+N S++N+ L M+GLTAKVFRTYNAS T+Q Q+
Sbjct: 480 DKQVFKNLRIFKKSPKQPGDDLFDRINPSLVNRQLQNYMKGLTAKVFRTYNASKTMQDQI 539
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
+ +++ + + AEK+ +N ANR VA+LCNHQR+V K+H S+ + +K+
Sbjct: 540 D-IIENEGTVAEKVAKFNAANRTVAILCNHQRTVSKTHGDSVQRINDKL 587
Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 56/104 (53%), Positives = 75/104 (72%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ +KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++
Sbjct: 352 VTWLAMWKENISDSLKYVRFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEK 411
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A+Y ID ALRAG EK ED+ADTVGCCSLR EH+ L
Sbjct: 412 MQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSLRYEHVTL 455
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 405 GNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEE 464
++K+K+ + K+ ++ LK K A +K K + L+ ++L + +Q DKE+
Sbjct: 664 SDIKDKLDKIDELEKEYQKELKTGKPIVTKNATVEKLKQQIETLENRILNVSIQLKDKED 723
Query: 465 NKTIALGTSKLNYLDPRISVTW 486
N ++LGTSK+NY+DPR+ V +
Sbjct: 724 NSEVSLGTSKMNYIDPRLIVMF 745
>sp|P93119|TOP1_DAUCA DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 SV=1
Length = 790
Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust.
Identities = 235/521 (45%), Positives = 311/521 (59%), Gaps = 53/521 (10%)
Query: 10 LSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAY 69
L+ + EE+AT +A M+E EY TK F NFM DWRK + EK +I +L CDF ++ +
Sbjct: 247 LTPEQEEVATMFAVMLETEYMTKPKFRENFMSDWRKILGEKH--IIQNLEDCDFTPIYEW 304
Query: 70 FVQKSEERKAMSKEEKKKIKDENEAITKE-YGVCTIDG-HKEKIGNFRIEPPGLFRGRGE 127
++ E++K MS +EKK IK+ + KE Y +DG +EK+GNFR+ + +
Sbjct: 305 HQREKEKKKQMSTDEKKAIKEGKDETRKEKYMWAVVDGMSREKVGNFRVGTTRVVQRSWR 364
Query: 128 HPKMGKLKRRVQAE-DIIINCSKDSKVPPPPPGH-KWKEVRHDNQVTWLASWTENVQG-Q 184
K ++K+ V ++ DI IN KD+ +P PP +WKE+RHDN VTWLA W + + +
Sbjct: 365 ASKDPQVKKNVYSQIDITINIGKDAPIPEPPIPGERWKEIRHDNTVTWLAFWNDPINPKE 424
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIREN-YQADWKSKEMRIRQRAVALYFI 243
KY+ L SS LKG+ +KYE +RKL I IR Y D+ SK+ + RQ AVA Y I
Sbjct: 425 FKYVFLAASSSLKGKVTREKYEKSRKLKDYIEGIRAAAYTKDFASKDSKKRQIAVATYLI 484
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
DKLALRAGNEKD+D+ADTVGCC+L+VE+++ +P ++ FDFLGKDSIRY NEV V
Sbjct: 485 DKLALRAGNEKDDDEADTVGCCTLKVENVETK-----RPNILKFDFLGKDSIRYQNEVEV 539
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL- 362
E RVF ++ F K+G DDLFD+L+TS LN HL ELM GLTAKVFRTYNASITL + +
Sbjct: 540 EPRVFSAIEQFRSGKEGGDDLFDQLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMVR 599
Query: 363 -----NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQ 417
E D AEK++ Y AN+ VA++CNHQR+V KSH M L EKI +
Sbjct: 600 CKLLSRETKGGDV--AEKVVVYQHANKEVAIICNHQRTVSKSHSAQMVRLNEKIEELKGL 657
Query: 418 VKDAERALKDAKKAGESKAMTD---KKKTALGRLKEQLLKL------------------- 455
+K+ + L K +D K+ L R K +LLKL
Sbjct: 658 LKELQEDLTRVNKGKPPLKNSDGKPKRNLNLKRYKGKLLKLIQKLRKWSETRRLSVTKKI 717
Query: 456 -------EVQETDKEEN---KTIALGTSKLNYLDPRISVTW 486
E E DKE KT+ALGTSK+NYLDPRI+V W
Sbjct: 718 AQTNTKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAW 758
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 75/106 (70%), Gaps = 2/106 (1%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIREN-YQADWK 540
+VTWLA W + + + KY+ L SS LKG+ +KYE +RKL I IR Y D+
Sbjct: 409 TVTWLAFWNDPINPKEFKYVFLAASSSLKGKVTREKYEKSRKLKDYIEGIRAAAYTKDFA 468
Query: 541 SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
SK+ + RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+VE+++
Sbjct: 469 SKDSKKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVE 514
>sp|P41511|TOP1_USTMA DNA topoisomerase 1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=TOP1 PE=3 SV=2
Length = 1019
Score = 298 bits (762), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 174/456 (38%), Positives = 256/456 (56%), Gaps = 47/456 (10%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWR---KSMTEKERAVITDLSKC 61
G+ + L EEIA FYA +E ++ FN NF D++ K ++ I K
Sbjct: 190 GRPVDLPWQTEEIAMFYAVKLETQHAQNAIFNRNFFDDFKTDLKKYPPRDGTQIKSFDKL 249
Query: 62 DFRKMHAYFVQ----KSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIE 117
DFR M+ Y+ + E +KA++ +K+ +E +A ++ +C +DG ++++GN +E
Sbjct: 250 DFRDMYNYWRSLKDAELERKKALAPSARKREIEERKAEETKWKICLVDGVEQRVGNVNVE 309
Query: 118 PPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPG-HKWKEVRHDNQVTWLAS 176
PPGLF GRG HPK GK+KRR+ DI IN S D P PP G W EV VTWLA
Sbjct: 310 PPGLFLGRGAHPKAGKVKRRISPGDITINHSADHPAPQPPAGMGDWAEVVEKKDVTWLAY 369
Query: 177 WTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQR 236
W EN+ GQ KY+ L+ +S K D +K+E ARKL + +IR + + KSK RQ
Sbjct: 370 WKENINGQYKYVFLDATSNFKTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKVRHERQI 429
Query: 237 AVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIR 296
A ++ ID +LRAGNEK ED+A+T G CSLR EH Q+ P + +FLGKDS++
Sbjct: 430 ATIVWLIDNFSLRAGNEKGEDEAETYGVCSLRCEHAQIK-----MPDTIHLEFLGKDSMK 484
Query: 297 YYNEVPV-EKRVFKNLQLFVEN------------KKGSDDLF----------DRLNTSVL 333
+ ++ + VFKN+ +F+++ KK SD +F L + +
Sbjct: 485 FEEDLKITNPDVFKNIAMFLKSNGMKDKSGNYVRKKPSDPIFCAPESGSGKMQPLQPNSV 544
Query: 334 NKHLSELMEGLTAKVFRTYNASITLQQQLNELMD-----PDFSEAE-----KILAYNRAN 383
N+ LS+ M+GL+AKVFRTYNAS+T Q L + + P+ +E E LAYN AN
Sbjct: 545 NQFLSKYMKGLSAKVFRTYNASVTFQGLLEQTEEWLKSRPNAAEREINQTNLRLAYNEAN 604
Query: 384 RAVAVLCNHQRSV-PKSHDKSMGNLKEKISNKRKQV 418
R VA+LCNHQ++V P ++++ ++KI R ++
Sbjct: 605 RQVAILCNHQKTVNPMLLNRNLERTQDKIFQIRYEI 640
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 67/104 (64%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ GQ KY+ L+ +S K D +K+E ARKL + +IR + + KSK
Sbjct: 364 VTWLAYWKENINGQYKYVFLDATSNFKTNSDREKFEKARKLDTVVKQIRRDVNKNLKSKV 423
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ A ++ ID +LRAGNEK ED+A+T G CSLR EH Q+
Sbjct: 424 RHERQIATIVWLIDNFSLRAGNEKGEDEAETYGVCSLRCEHAQI 467
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 450 EQLLKLEVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENV 494
E + K E + +K +AL TSKLNY+DPRI++ WL W + +
Sbjct: 795 EMIKKQEAELVNKNNTSDVALSTSKLNYIDPRITLAWLKEWDDRL 839
>sp|P32989|TOP1_VAR67 DNA topoisomerase 1 OS=Variola virus (isolate
Human/India/Ind3/1967) GN=TOP1 PE=1 SV=1
Length = 314
Score = 37.7 bits (86), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 235 QRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
Q AV + +R G K + +TVG +L+ +HI++ +K + F+GKD
Sbjct: 116 QLAVFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDK------IVIKFVGKDK 169
Query: 295 IRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
+ + V R++K L ++ + LF++L+ + + + + G+ K RTY
Sbjct: 170 VSHEFVVHKSNRLYKPLLKLTDDSSPEEFLFNKLSERKVYECIKQF--GIRIKDLRTYGV 227
Query: 355 SITL 358
+ T
Sbjct: 228 NYTF 231
>sp|P16472|TOP1_RFVKA DNA topoisomerase 1 OS=Rabbit fibroma virus (strain Kasza) GN=TOP1
PE=3 SV=1
Length = 314
Score = 37.4 bits (85), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 13/166 (7%)
Query: 198 GEKDWQKYETAR-----KLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGN 252
G+ Q+ +AR K+ + I+KI + + K + Q V + +R G
Sbjct: 73 GKMHVQRRNSARDTIFIKVHRVIDKIHKFIDDTIEHKNDVLFQLGVFMLMETSFFIRMGK 132
Query: 253 EKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQ 312
K + DTVG +L+ ++I K + F+GKD I + V R++K L
Sbjct: 133 VKYLKENDTVGLLTLKNKNIVRENRK------ILIHFVGKDKIIHNFTVHSSNRLYKPLL 186
Query: 313 LFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
+ K+ LF +L+ + K + + G+ K RTY + T
Sbjct: 187 RLIGRKEPDSFLFHKLSEKKVYKAVQQF--GIRLKDLRTYGVNYTF 230
>sp|P68698|TOP1_VACCW DNA topoisomerase 1B OS=Vaccinia virus (strain Western Reserve)
GN=TOP1 PE=1 SV=1
Length = 314
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 235 QRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
Q AV + +R G K + +TVG +L+ +HI++ ++ + F+GKD
Sbjct: 116 QLAVFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDE------IVIKFVGKDK 169
Query: 295 IRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
+ + V R++K L ++ + LF++L+ + + + + G+ K RTY
Sbjct: 170 VSHEFVVHKSNRLYKPLLKLTDDSSPEEFLFNKLSERKVYECIKQF--GIRIKDLRTYGV 227
Query: 355 SITL 358
+ T
Sbjct: 228 NYTF 231
>sp|P68697|TOP1_VACCC DNA topoisomerase 1B OS=Vaccinia virus (strain Copenhagen) GN=TOP1
PE=2 SV=1
Length = 314
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 235 QRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
Q AV + +R G K + +TVG +L+ +HI++ ++ + F+GKD
Sbjct: 116 QLAVFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDE------IVIKFVGKDK 169
Query: 295 IRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
+ + V R++K L ++ + LF++L+ + + + + G+ K RTY
Sbjct: 170 VSHEFVVHKSNRLYKPLLKLTDDSSPEEFLFNKLSERKVYECIKQF--GIRIKDLRTYGV 227
Query: 355 SITL 358
+ T
Sbjct: 228 NYTF 231
>sp|Q76ZS7|TOP1_VACCA DNA topoisomerase 1B OS=Vaccinia virus (strain Ankara) GN=TOP1 PE=2
SV=1
Length = 314
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 235 QRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
Q AV + +R G K + +TVG +L+ +HI++ ++ + F+GKD
Sbjct: 116 QLAVFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDE------IVIKFVGKDK 169
Query: 295 IRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNA 354
+ + V R++K L ++ + LF++L+ + + + + G+ K RTY
Sbjct: 170 VSHEFVVHKSNRLYKPLLKLTDDSSPEEFLFNKLSERKVYECIKQF--GIRIKDLRTYGV 227
Query: 355 SITL 358
+ T
Sbjct: 228 NYTF 231
>sp|Q7T6X9|TOP1E_MIMIV DNA topoisomerase 1B OS=Acanthamoeba polyphaga mimivirus GN=TOP1E
PE=1 SV=2
Length = 336
Score = 35.8 bits (81), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 19/141 (13%)
Query: 234 RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKD 293
R ++ L + +R G E Q + G SLR +H+++ P V+ +F GK
Sbjct: 120 RVISLMLQMVRDYNMRVGKEVYARQNKSYGISSLRKKHVKI------SPGVITLNFKGKS 173
Query: 294 SIR---------YYNEVPVEKRVFKN--LQLFVENKKGSDDLFDRLNTSVLNKHLSELME 342
R Y + + + ++ + Q ++ G++ + R+N LNK++ E M
Sbjct: 174 GQRLNYTIRNDFYIDGIKMLMKLEGDRLFQYISTDEDGNEKIM-RVNDRDLNKYIQENMG 232
Query: 343 G-LTAKVFRTYNASITLQQQL 362
T K FRT+ A++ Q L
Sbjct: 233 SEFTIKDFRTFGANLYFIQAL 253
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,144,297
Number of Sequences: 539616
Number of extensions: 9822182
Number of successful extensions: 41101
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 255
Number of HSP's that attempted gapping in prelim test: 40137
Number of HSP's gapped (non-prelim): 1078
length of query: 618
length of database: 191,569,459
effective HSP length: 124
effective length of query: 494
effective length of database: 124,657,075
effective search space: 61580595050
effective search space used: 61580595050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 64 (29.3 bits)