Query psy17743
Match_columns 618
No_of_seqs 352 out of 658
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 21:49:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a31_A Protein (topoisomerase 100.0 4E-191 1E-195 1544.5 31.5 494 1-494 66-566 (591)
2 2b9s_A Topoisomerase I-like pr 100.0 1E-155 5E-160 1234.6 32.2 389 1-395 43-432 (432)
3 1ois_A DNA topoisomerase I; DN 100.0 3E-90 1E-94 677.3 14.9 192 1-192 28-223 (223)
4 3m4a_A Putative type I topoiso 100.0 1.6E-78 5.4E-83 632.0 14.6 258 116-400 8-288 (346)
5 2h7g_X DNA topoisomerase 1; ty 100.0 5.2E-76 1.8E-80 607.5 13.7 257 120-401 3-274 (314)
6 1a31_A Protein (topoisomerase 100.0 7.1E-32 2.4E-36 295.0 2.6 130 462-591 204-344 (591)
7 2b9s_A Topoisomerase I-like pr 100.0 6.7E-31 2.3E-35 279.9 3.7 128 462-589 180-317 (432)
8 2b9s_B DNA topoisomerase I-lik 99.8 1.8E-20 6.1E-25 151.3 -2.0 41 456-496 1-41 (62)
9 2h7g_X DNA topoisomerase 1; ty 99.8 3.4E-20 1.1E-24 192.0 -1.0 84 507-590 74-158 (314)
10 3m4a_A Putative type I topoiso 99.7 7.8E-20 2.7E-24 191.2 -1.2 98 507-604 81-196 (346)
11 1ois_A DNA topoisomerase I; DN 97.7 1.3E-05 4.4E-10 79.5 2.4 25 481-505 199-223 (223)
12 4a8e_A XER A, probable tyrosin 95.8 0.011 3.7E-07 56.7 5.8 126 237-401 123-262 (292)
13 1z1b_A Integrase; protein-DNA 95.2 0.064 2.2E-06 53.3 9.2 101 237-359 200-319 (356)
14 1xo0_A Recombinase CRE; CRE re 94.9 0.067 2.3E-06 51.6 8.1 119 238-393 143-297 (324)
15 1a0p_A Site-specific recombina 94.7 0.078 2.7E-06 50.4 8.1 102 237-359 134-254 (290)
16 1ae9_A Lambda integrase; DNA r 94.6 0.13 4.3E-06 46.2 8.7 100 236-359 23-143 (179)
17 3nkh_A Integrase; alpha-fold, 94.4 0.068 2.3E-06 50.5 6.9 121 236-393 57-214 (244)
18 1z19_A Integrase; protein-DNA 92.9 0.34 1.2E-05 45.9 8.7 99 236-358 126-245 (283)
19 2b9s_B DNA topoisomerase I-lik 89.1 0.071 2.4E-06 43.4 -0.1 24 593-618 39-62 (62)
20 2a3v_A Site-specific recombina 87.4 1.2 4.2E-05 43.6 7.5 102 238-359 124-279 (320)
21 1aih_A HP1 integrase; DNA inte 82.7 1.4 4.8E-05 39.3 5.0 96 234-358 25-124 (170)
22 2k48_A Nucleoprotein; viral pr 60.6 11 0.00038 33.6 5.0 62 401-462 34-101 (107)
23 1vcc_A DNA topoisomerase I; DN 59.5 1.7 5.7E-05 36.5 -0.4 48 132-189 15-72 (77)
24 3mq7_A Bone marrow stromal ant 50.6 74 0.0025 28.9 8.7 12 353-364 25-36 (121)
25 2ic6_A Nucleocapsid protein; h 48.8 20 0.00068 30.5 4.5 63 400-462 3-71 (78)
26 2f23_A Anti-cleavage anti-GREA 47.0 75 0.0026 29.2 8.6 70 401-472 9-87 (156)
27 1ysm_A Calcyclin-binding prote 45.4 42 0.0014 28.2 6.0 57 410-470 4-64 (77)
28 1lrz_A FEMA, factor essential 44.7 19 0.00067 37.8 4.8 57 399-455 244-300 (426)
29 4h22_A Leucine-rich repeat fli 44.5 60 0.0021 28.9 7.0 59 401-465 29-87 (103)
30 4fi5_A Nucleoprotein; structur 42.5 27 0.00094 31.4 4.6 60 403-462 23-88 (113)
31 3gs2_B Chromobox protein homol 41.8 7.9 0.00027 27.4 0.8 10 117-126 21-30 (30)
32 3lay_A Zinc resistance-associa 41.8 56 0.0019 31.2 7.0 65 408-472 84-149 (175)
33 3htk_A Structural maintenance 41.4 98 0.0034 23.8 7.3 53 400-458 3-55 (60)
34 3hnw_A Uncharacterized protein 41.0 69 0.0024 29.4 7.3 52 402-459 82-133 (138)
35 2p4v_A Transcription elongatio 40.3 1E+02 0.0034 28.6 8.4 72 401-472 8-89 (158)
36 2ic9_A Nucleocapsid protein; h 39.5 27 0.00093 30.7 4.0 61 402-462 5-71 (96)
37 1gmj_A ATPase inhibitor; coile 36.6 74 0.0025 27.4 6.1 20 438-457 60-79 (84)
38 2cto_A Novel protein; high mob 34.0 24 0.00082 30.3 2.8 56 39-103 21-76 (93)
39 1fxk_A Prefoldin; archaeal pro 33.2 1.3E+02 0.0046 25.1 7.5 60 402-461 15-90 (107)
40 3viq_B Mating-type switching p 32.9 1.2E+02 0.004 26.1 6.8 28 404-431 3-30 (85)
41 2zqm_A Prefoldin beta subunit 32.8 1.4E+02 0.005 25.3 7.7 26 402-427 20-45 (117)
42 2efr_A General control protein 27.8 62 0.0021 30.5 4.7 74 375-455 43-117 (155)
43 3oja_B Anopheles plasmodium-re 27.5 1.1E+02 0.0039 32.7 7.4 16 443-458 565-580 (597)
44 1grj_A GREA protein; transcrip 27.3 2.4E+02 0.0083 25.9 8.7 71 402-472 9-90 (158)
45 3hnw_A Uncharacterized protein 26.6 1.6E+02 0.0054 27.0 7.1 52 404-461 77-128 (138)
46 1l8d_A DNA double-strand break 26.5 1.3E+02 0.0043 25.7 6.2 22 407-428 22-43 (112)
47 1zxa_A CGMP-dependent protein 26.2 1E+02 0.0036 25.3 5.2 51 394-457 3-53 (67)
48 3m91_A Proteasome-associated A 25.6 2.4E+02 0.0081 22.0 7.0 42 401-455 8-49 (51)
49 1lq7_A Alpha3W; three helix bu 25.3 1.6E+02 0.0053 23.5 5.8 19 437-455 49-67 (67)
50 1ic2_A Tropomyosin alpha chain 23.6 65 0.0022 26.7 3.6 54 404-457 1-62 (81)
51 3u59_A Tropomyosin beta chain; 21.2 85 0.0029 27.0 4.0 21 402-422 2-22 (101)
52 2dq0_A Seryl-tRNA synthetase; 21.0 1.8E+02 0.006 31.4 7.3 58 401-461 37-94 (455)
53 4ew5_A CIGR protein; inner mem 20.5 51 0.0017 29.2 2.4 54 113-176 31-86 (102)
No 1
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=100.00 E-value=4.4e-191 Score=1544.53 Aligned_cols=494 Identities=71% Similarity=1.149 Sum_probs=401.0
Q ss_pred CccCCeecCCChhhHHHHHHHHHHhCCCCCCchhHhhhhHHHHHHHcccccccccccccCCCcHHHHHHHHhhHHHHHcC
Q psy17743 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAM 80 (618)
Q Consensus 1 ~~ydg~~v~L~~~~EEvA~f~a~~l~~~~~~~~~F~~NFf~d~~~~l~~~~~~~i~~~~kcDF~~i~~~~~~~~e~kk~~ 80 (618)
|+|||+||+|||+|||||||||+||+|+|+++++||+|||+||+++|+.++++.|++|++||||+||+||++++|+||+|
T Consensus 66 ~~Ydg~pv~L~~~~EEvAtf~a~ml~t~~~~~~~F~~NFf~df~~~l~~~~~~~i~~~~kcDF~~i~~~~~~~~e~kk~~ 145 (591)
T 1a31_A 66 FYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQM 145 (591)
T ss_dssp CEETTEECCCCHHHHHHHHHHHTTTTSGGGGCHHHHHHHHHHHHHHSCHHHHHHCCCGGGEECHHHHHHHHHHHHHHHSC
T ss_pred eeECCEeccCCHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHhhhcCCcccCchhhCCCHHHHHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhccccEEEEcCeeeeecccccCCCcccccCCCCCCCCCCCCCCCccchhhhccCCCCCCCCCCCC
Q psy17743 81 SKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGH 160 (618)
Q Consensus 81 t~eEK~~~k~~~~~~~~~y~~~~~DG~~ekvgnfrvepPGlfRgRG~hpk~G~~k~RI~pedv~iN~~k~a~IPpp~~Gh 160 (618)
|+|||+++|+++++++++||||+||||+|+||||||||||||||||+||+||+||+||+|+||||||+++++||+|||||
T Consensus 146 s~eEK~~~k~~~~~~~~~y~~~~~DG~~ekvgnfriEPPgLFrGRG~HPk~G~lK~RV~pedvtiNi~k~a~iP~pp~Gh 225 (591)
T 1a31_A 146 SKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGH 225 (591)
T ss_dssp CHHHHHHHHHHHHHHHHHHSEEEETTEEEEBSCCBCCCSEECCCSSSCTTTTCEECCCCGGGCEEECCTTSCCCCCSTTC
T ss_pred CHHHHHHHHHHHHHHHhhcCEEEECCeEEecCCcccCCCccccCCCCCCCCCccccccChhhhhhhhccCCCCCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeCCceeEEeeccCCcCCceeEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Q psy17743 161 KWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240 (618)
Q Consensus 161 aWkdV~hdntvtWla~w~~hIqGr~QYvylh~~S~~k~~rD~~Kfe~ar~l~~~Lp~IR~~y~~dL~s~~~~~RqlA~Al 240 (618)
||++|+|||||||||+|++|||||+||+|++|||+|+++||+.||++|++|+.+||+||++|.+||++++|++||+|+||
T Consensus 226 aWkdV~hd~tvtWia~w~~hIqGRkQY~Yh~~~s~wk~~rD~~Kfe~ar~l~~~Lp~IR~~~~~dL~s~~~r~rqlAval 305 (591)
T 1a31_A 226 KWKEVRHDNKVTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVAL 305 (591)
T ss_dssp CCSEEECCTTSCCSEEEECTTTCCEEEECBCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CcceeccCCceEEEEeChHHhcCCeeEEEecCchHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccCCcccccc-cCccccccccccceEeecccCCCCcEEEEEeecCCceEEEEEeccchHHHHHHHHhhhccC
Q psy17743 241 YFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKK 319 (618)
Q Consensus 241 yLID~laLRvGnEkya~e-ndTvG~cTLR~eHV~l~~~~d~~~~~V~FdFlGKdsir~~~~V~vD~~v~knL~~f~~~K~ 319 (618)
||||.+|||||||+|+++ |+||||||||++||+|++++||++++|+|+|+|||||+|+++|.||++||+||+.|+++|.
T Consensus 306 ~LID~~alRvGnekya~e~ndTvGl~TLR~eHV~l~~~~~g~~~~V~FdF~GKdgir~~~~V~vD~~v~k~L~~f~~~K~ 385 (591)
T 1a31_A 306 YFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQ 385 (591)
T ss_dssp HHHHHHCCCCCCCCCTTTSCCCCCGGGCBGGGCCEEEEETTEEEEEEEEEECGGGCEEEEEEECCHHHHHHHHHTTTTCC
T ss_pred HHHHHhhhhcCCcccccccCCCeeeecccccceEEeccccCCCCeEEEEEecCCceEEEEEEccCHHHHHHHHHHHhCCC
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCChhHHHHHHHHhcCCCeeeeeccccchHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHcCCCCCCCCc
Q psy17743 320 GSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKS 399 (618)
Q Consensus 320 Pgd~LF~~l~s~~LN~yLkelm~glTAKvFRTynASvt~~~~L~~~~~~~~s~~ek~~~yn~Anr~VAilcNHqraV~K~ 399 (618)
||++||+.|+|++||+||+++|||||||||||||||+||+++|.+++...+|+++++++||+||++||+||||||||||+
T Consensus 386 Pg~~LF~~l~s~~lN~yLkelmgglTAKdFRTwnASvta~~~L~~~~~~~~s~~ek~~~yn~Anr~VAiLCNHqR~vpK~ 465 (591)
T 1a31_A 386 PEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKT 465 (591)
T ss_dssp TTSBTTTTCCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC-------------
T ss_pred CchHhhccCCHHHHHHHHHHHcCCCceeeeccCchHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999988766699999999999999999999999999999
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------CcccHHHHHHHHHHHHHHHHHhcccchhhccccceeeccC
Q psy17743 400 HDKSMGNLKEKISNKRKQVKDAERALKDAKKAGE------SKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTS 473 (618)
Q Consensus 400 ~~~~m~k~~~ki~~~~~~~~~~~~~l~~~~~~~k------~~~~~e~~~~~~~~~~~~i~k~~~~~~~ke~nk~vaLgTS 473 (618)
|++||+||++||+++++|+.+++.+|+.++++.+ .+.++|+++++|+++++||++|++|++|||+||+||||||
T Consensus 466 ~~~~m~kl~~ki~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~k~~~~~~~~i~k~~~q~~~ke~nk~vaLgTS 545 (591)
T 1a31_A 466 FEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTS 545 (591)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHHHHHHhhhhhhhcCeeeecccc
Confidence 9999999999999999999999999998865433 3457899999999999999999999999999999999999
Q ss_pred CcCCCCCccchhhhheeeccC
Q psy17743 474 KLNYLDPRISVTWLASWTENV 494 (618)
Q Consensus 474 k~NY~DPRitVtWlkkw~vpI 494 (618)
|||||||||||+||++++|||
T Consensus 546 KiNYlDPRItvawckk~~VPi 566 (591)
T 1a31_A 546 KLNYLDPRITVAWCKKWGVPI 566 (591)
T ss_dssp CTTTSCHHHHHHHHHHTTCCG
T ss_pred hhhccCchhheeehhhcCCCH
Confidence 999999999999999999933
No 2
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=100.00 E-value=1.4e-155 Score=1234.56 Aligned_cols=389 Identities=52% Similarity=0.911 Sum_probs=380.4
Q ss_pred CccCCeecCCChhhHHHHHHHHHHhCCCCCCchhHhhhhHHHHHHHcccccccccccccCCCcHHHHHHHHhhHHHHHcC
Q psy17743 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAM 80 (618)
Q Consensus 1 ~~ydg~~v~L~~~~EEvA~f~a~~l~~~~~~~~~F~~NFf~d~~~~l~~~~~~~i~~~~kcDF~~i~~~~~~~~e~kk~~ 80 (618)
|+|||+||+|||+|||||||||+||+|+|+++++||+|||+||+++|+ ++++.|++|++||||+||+||++++|+||+|
T Consensus 43 ~~ydg~~v~l~~~~EEva~f~a~~l~~~~~~~~~F~~NFf~d~~~~l~-~~~~~i~~~~~cdF~~i~~~~~~~~e~kk~~ 121 (432)
T 2b9s_A 43 IFYDGREFKMTPEEEEVATMFAVMKEHDYYRMEVFRRNFFESWREILD-KRQHPIRRLELCDFEPIYQWHLVQREKKLSR 121 (432)
T ss_dssp EEETTEEECCCHHHHHHHHHHHTTTTSGGGGCHHHHHHHHHHHHHHHT-TSCCCCCCGGGEECHHHHHHHHHHHHHHHTS
T ss_pred eeECCEeccCCHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhc-cCCcccCchhhCCCHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999999999999999998 6689999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhccccEEEEcCeeeeecccccCCCcccccCCCCCCCCCCCCCCCccchhhhccCCCCCCCCCCCC
Q psy17743 81 SKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGH 160 (618)
Q Consensus 81 t~eEK~~~k~~~~~~~~~y~~~~~DG~~ekvgnfrvepPGlfRgRG~hpk~G~~k~RI~pedv~iN~~k~a~IPpp~~Gh 160 (618)
|+|||+++|+++++++++||||+||||+|+||||||||||||||||+|||||+||+||+|+||||||+++++||+|||||
T Consensus 122 ~~eek~~~k~~~~~~~~~y~~~~~Dg~~ekvgnf~~epPglfrgRG~hpk~G~lK~RV~pedv~iNi~k~a~iP~p~~gh 201 (432)
T 2b9s_A 122 TKEEKKAIKEKQDAEAEPYRYCVWDGRREQVANFRVEPPGLFRGRGKHPLMGKLKVRVQPEDITINIGETAEVPVPPAGH 201 (432)
T ss_dssp CTTHHHHHHHHHHHHHGGGSEEEETTEEEEBSCCBCCCCEECCCSSSCTTTTCEECCCCGGGCEEECCTTSCCCCCCTTC
T ss_pred CHHHHHHHHHHHHHHHhhcCEEEECCeEEecCCcccCCCccccCCCCCCCCCccccccChhhhhhhhccCCCCCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeCCceeEEeeccCCcCCceeEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Q psy17743 161 KWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240 (618)
Q Consensus 161 aWkdV~hdntvtWla~w~~hIqGr~QYvylh~~S~~k~~rD~~Kfe~ar~l~~~Lp~IR~~y~~dL~s~~~~~RqlA~Al 240 (618)
+|++|+|||||||||+|+||||||+||+|++|||+|+++||+.||++|++|+++||+||++|.+||+++++++||+|+||
T Consensus 202 aWkdV~hd~~vtWia~w~~~IqGr~qYvy~~~~s~w~~~rd~~Kfer~~~f~~~Lp~IR~~~~~dL~~~~~r~rqlAvav 281 (432)
T 2b9s_A 202 KWAAVQHDHTVTWLAMWRDSVAGNMKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDIRASYMEDFKSNDLHVAQRAVAM 281 (432)
T ss_dssp CCSEEECCTTCCCSEEEECTTTCCEEEECBCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CcceeccCCceEEEeeChHHhcCCeeEEEecCcHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccccCCcccccccCccccccccccceEeecccCCCCcEEEEEeecCCceEEEEEeccchHHHHHHHHhhhccCC
Q psy17743 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKG 320 (618)
Q Consensus 241 yLID~laLRvGnEkya~endTvG~cTLR~eHV~l~~~~d~~~~~V~FdFlGKdsir~~~~V~vD~~v~knL~~f~~~K~P 320 (618)
||||.++||||||+|+++|+||||||||++||+|++ +++|+|+|+|||||+|+++|+||++||++|+.|+++|.|
T Consensus 282 ~LiD~~alRvGnekYa~endTvGl~TLR~eHV~l~~-----~~~V~FdF~GKdgir~~~~V~vD~~l~k~L~~~~~~K~P 356 (432)
T 2b9s_A 282 YFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQLMP-----DNIVRFDFLGKDSIRYQNDVAVLPEVYALLQRFTRRKSP 356 (432)
T ss_dssp HHHHHHCCCCCCCCCTTSCCCCCGGGCBGGGEEECT-----TSEEEEEEECGGGCEEEEEEECCHHHHHHHHHHHTTCCT
T ss_pred HHHHHhhcccCCccccccCCCEeecccccccEEEcC-----CCeEEEEEecCCceEEEEEEecCHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999998 489999999999999999999999999999999998899
Q ss_pred CccccccCChhHHHHHHHHhcCCCeeeeeccccchHHHHHHHhhcC-CCCccHHHHHHHHHHHHHHHHHHcCCCCC
Q psy17743 321 SDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELM-DPDFSEAEKILAYNRANRAVAVLCNHQRS 395 (618)
Q Consensus 321 gd~LF~~l~s~~LN~yLkelm~glTAKvFRTynASvt~~~~L~~~~-~~~~s~~ek~~~yn~Anr~VAilcNHqra 395 (618)
|++||++|+|++||+||+++|||||||||||||||+||+++|.+++ +.++++++|+.+||+|||+||||||||||
T Consensus 357 g~~LF~~l~s~~lN~yL~elmgg~TAKdFRTw~aSvta~~~L~~~~~~~~~t~~~K~~~yn~Anr~VAilCnHqr~ 432 (432)
T 2b9s_A 357 GMDIFDQLNPTQLNDHLKSFMDGLSAKVFRTYNASITLDRWFKEKPVDPKWSTADKLAYFNKANTEVAILCNHQKS 432 (432)
T ss_dssp TSBTTTTCCHHHHHHHHTTTSTTCCTTHHHHHHHHHHHHHHHHHCC----CCTTHHHHHHHHHHHHHHHHHTCEEC
T ss_pred hhHhcccCCHHHHHHHHHHHhCCCceeeeccCchHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999999987 45568999999999999999999999996
No 3
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1
Probab=100.00 E-value=3e-90 Score=677.31 Aligned_cols=192 Identities=46% Similarity=0.907 Sum_probs=185.9
Q ss_pred CccCCeecCCChhhHHHHHHHHHHhCCCCCCchhHhhhhHHHHHHHccccc----ccccccccCCCcHHHHHHHHhhHHH
Q psy17743 1 MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKE----RAVITDLSKCDFRKMHAYFVQKSEE 76 (618)
Q Consensus 1 ~~ydg~~v~L~~~~EEvA~f~a~~l~~~~~~~~~F~~NFf~d~~~~l~~~~----~~~i~~~~kcDF~~i~~~~~~~~e~ 76 (618)
|+|||+||+|||+|||||||||+||+|+|+++++||+|||+||+++|+.++ ++.|++|++||||+||+||++++|+
T Consensus 28 ~~YdGkpv~L~p~~EEvAtf~a~ml~t~y~~~~~F~kNFf~Df~~~l~~~~~~~~~~~I~~~~kcDFs~i~~~~~~~~e~ 107 (223)
T 1ois_A 28 LYYDGKPVDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQ 107 (223)
T ss_dssp EEETTEEECCCHHHHHHHHHHHHTTTSSGGGCHHHHHHHHHHHHHHHHHTTCCTTCCCCCCGGGEECHHHHHHHHHHHHH
T ss_pred eeECCEECcCCHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHhhhccccccCcccCchhhCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999998764 7899999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhccccEEEEcCeeeeecccccCCCcccccCCCCCCCCCCCCCCCccchhhhccCCCCCCCC
Q psy17743 77 RKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPP 156 (618)
Q Consensus 77 kk~~t~eEK~~~k~~~~~~~~~y~~~~~DG~~ekvgnfrvepPGlfRgRG~hpk~G~~k~RI~pedv~iN~~k~a~IPpp 156 (618)
||+||+|||+++|+++++++++||||+||||+|+||||||||||||||||+|||||+||+||+|||||||||++++||+|
T Consensus 108 kk~~skEEKk~~Keek~~~~~~y~~~~vDG~kekVGNFriEPPgLFrGRG~HPK~G~lK~RV~PeDVtIN~gkda~vP~p 187 (223)
T 1ois_A 108 KKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFRGRGAHPKTGKLKRRVNPEDIVLNLSKDAPVPPA 187 (223)
T ss_dssp HTTC---CHHHHHHHHHHHHHHHHEEEETTEEEEEECCBCCCCEECCCCTTCTTTTCEECCCCGGGCEEECCSSSCCCCC
T ss_pred HHhCCHHHHHHHHHHHHHHHhhcCEEEECCEEEeeCCcccCCCccccCCCCCCCccccccccCHhHeEEecCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeeCCceeEEeeccCCcCCceeEEEecC
Q psy17743 157 PPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNP 192 (618)
Q Consensus 157 ~~GhaWkdV~hdntvtWla~w~~hIqGr~QYvylh~ 192 (618)
||||+|++|+|||||||||+|.++|||+.|||||+|
T Consensus 188 p~Gh~WkeV~HDntvtWLA~W~enI~~~~KYV~Laa 223 (223)
T 1ois_A 188 PEGHKWGEIRHDNTVQWLAMWRENIFNSFKYVRLAA 223 (223)
T ss_dssp STTCCCSEEECCTTCCCSEEEECTTTCCEEEEEECC
T ss_pred CCCCCcceeecCCCceEEEEeeeccCCceeEEEecC
Confidence 999999999999999999999999999999999986
No 4
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A*
Probab=100.00 E-value=1.6e-78 Score=632.00 Aligned_cols=258 Identities=19% Similarity=0.272 Sum_probs=220.2
Q ss_pred cCCCcccc---cC-CCCCCCCCCCCCCCccchhhhccCCCCCCCCCCCCCcceeeeCCceeEEeeccC-CcC-------C
Q psy17743 116 IEPPGLFR---GR-GEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTE-NVQ-------G 183 (618)
Q Consensus 116 vepPGlfR---gR-G~hpk~G~~k~RI~pedv~iN~~k~a~IPpp~~GhaWkdV~hdntvtWla~w~~-hIq-------G 183 (618)
+..||+.| |+ ||+ +.+.-+++|.+.+ ++.+++.++||| ||+|| ||||++| ||| |
T Consensus 8 ~~~pgi~R~r~g~~gf~-Y~~~~G~~i~d~~-~~~Ri~~LaIPP-----Aw~dV-------wI~p~~nghlQAtG~Da~G 73 (346)
T 3m4a_A 8 LAEEYLRREGHDPQKFR-YVHPDGTPYTDAD-GLARIARLAVPP-----AYQDV-------YVSPDAENELQAFGRDAAG 73 (346)
T ss_dssp HC----CC--------------------------CHHHHHCCCT-----TCEEE-------EECSSSSCSEEEEEECCC-
T ss_pred CCCCCcEEeecCCCCeE-EECCCCCEecCHH-HHHHHHhcCCCC-----CcceE-------EEeeCCCCceEEEEecCCC
Confidence 47899998 88 998 6667788998766 788899999999 99999 9999999 999 9
Q ss_pred ceeEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhccccc-chhHHHHHHHHHhhhccccCCcccccccCcc
Q psy17743 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM-RIRQRAVALYFIDKLALRAGNEKDEDQADTV 262 (618)
Q Consensus 184 r~QYvylh~~S~~k~~rD~~Kfe~ar~l~~~Lp~IR~~y~~dL~s~~~-~~RqlA~AlyLID~laLRvGnEkya~endTv 262 (618)
|+||+| || .|+++||..||+++++|+++||+||++|.+||+++++ +++|+|+|+||||.++||||||+|+++|+||
T Consensus 74 RkQYrY-H~--~w~~~rd~~Kfer~~~f~~~Lp~IR~~v~~dL~~~~~~r~rvlA~av~LlD~~~lRvGne~Ya~en~T~ 150 (346)
T 3m4a_A 74 RLQYRY-HP--DFVQAGALKKWQRLTRFAGALPTLKVATTADLRASGLPPRKVMALMTRLLHVARFRVGSDIYARQHKTY 150 (346)
T ss_dssp CEEEEE-CG--GGC---CCCHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCC
T ss_pred Cccccc-CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHHHhcccCCChhhhhhcCCc
Confidence 999999 99 9999999999999999999999999999999999888 8999999999999999999999999999999
Q ss_pred ccccccccceEeecccCCCCcEEEEEeecCCceEEEEEeccchHHHHHHHHhhhccCCCccccccCCh----------hH
Q psy17743 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNT----------SV 332 (618)
Q Consensus 263 G~cTLR~eHV~l~~~~d~~~~~V~FdFlGKdsir~~~~V~vD~~v~knL~~f~~~K~Pgd~LF~~l~s----------~~ 332 (618)
||||||++||++++ +.|+|+|+|||||+|+++|+ |++||++|+.|++ .||++||+|+++ ++
T Consensus 151 GltTLr~~HV~~~~------~~v~f~F~GK~gi~~~~~v~-D~~l~~~l~~~~~--~pg~~LF~~~d~~g~~~~~v~s~~ 221 (346)
T 3m4a_A 151 GLSTLRQRHVVVDG------NTVTFRFKGKHGVSQHKATS-DRTLAANMQKLLD--LPGPWLFQTVDAGGGERRRIHSTE 221 (346)
T ss_dssp CGGGCBGGGEEEET------TEEEEEEECGGGCEEEEEEC-CHHHHHHHHHHHT--SCSSBSCEEECCCC-CEEECCHHH
T ss_pred ccccccHhheeeeC------CEEEEEEecCCCCEEEEEEC-cHHHHHHHHHHHh--CchhhhcceEcCCCCccccCCHHH
Confidence 99999999999998 89999999999999999999 9999999999998 799999999754 88
Q ss_pred HHHHHHHhcCCCeeeeeccccchHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHcCCCCCCCCch
Q psy17743 333 LNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSH 400 (618)
Q Consensus 333 LN~yLkelm~glTAKvFRTynASvt~~~~L~~~~~~~~s~~ek~~~yn~Anr~VAilcNHqraV~K~~ 400 (618)
||+||+++|||||||||||||||++|+++|.+++++ .+.+++++.|++||++||++|||||||||++
T Consensus 222 vN~yL~e~~g~~TAKdFRTw~aSv~a~~~L~~~~~~-~~~~~~kk~i~~a~k~VA~~LgNTpaV~R~s 288 (346)
T 3m4a_A 222 LNAYLREVIGPFTAKDFRTWGGTLLAAEYLAQQGTE-SSERQAKKVLVDCVKFVADDLGNTPAVTRGS 288 (346)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCCC-SSHHHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHcCCCchhhccCcHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHhCCCccchhhh
Confidence 999999999999999999999999999999988654 4778888899999999999999999999983
No 5
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A
Probab=100.00 E-value=5.2e-76 Score=607.53 Aligned_cols=257 Identities=18% Similarity=0.249 Sum_probs=231.1
Q ss_pred cccccCCCCCCCCCCCCCCCccchhhhccCCCCCCCCCCCCCcceeeeCCceeEEeec-----cCCcC-------CceeE
Q psy17743 120 GLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASW-----TENVQ-------GQVKY 187 (618)
Q Consensus 120 GlfRgRG~hpk~G~~k~RI~pedv~iN~~k~a~IPpp~~GhaWkdV~hdntvtWla~w-----~~hIq-------Gr~QY 187 (618)
+++--.|...+.+.++.||.|++++|+|++.++||| ||++| ||||| ++||| ||+||
T Consensus 3 ~~~~~~G~~~~d~~~~~rv~~~~~~~~ri~~l~IPP-----Aw~dV-------wi~~~~~e~~~~~lqAtG~Da~GRkQY 70 (314)
T 2h7g_X 3 ALFYKDGKLFTDNNFLNPVSDNNPAYEVLQHVKIPT-----HLTDV-------VVYGQTWEEALTRLIFVGSDSKGRRQY 70 (314)
T ss_dssp EEEEETTEEESSTTSCSBCCTTCTHHHHHHHCCCCT-----TCEEE-------EEESSCHHHHTTSEEEEEECTTCCEEE
T ss_pred ceecCCCccccCccccccCCchhHHHHHHHhCCCCC-----chheE-------EEecccccCCCCCeEEEeeccccCcce
Confidence 355566888899999999999999999999999999 99999 99999 45999 99999
Q ss_pred EEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHHhhccccc-chhHHHHHHHHHhh-hccccCCcccccccCccccc
Q psy17743 188 IMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM-RIRQRAVALYFIDK-LALRAGNEKDEDQADTVGCC 265 (618)
Q Consensus 188 vylh~~S~~k~~rD~~Kfe~ar~l~~~Lp~IR~~y~~dL~s~~~-~~RqlA~AlyLID~-laLRvGnEkya~endTvG~c 265 (618)
+| || .|+++||+.||+++++|+++||+||++|.+||+++++ +.+|.| +++|||. ++||||||+|++||+|||||
T Consensus 71 ~Y-h~--~w~~~rd~~Kfe~~~~~~~~Lp~IR~~v~~dL~~~~~~r~~~aa-v~~lld~~~alRvGnekya~en~T~Glt 146 (314)
T 2h7g_X 71 FY-GK--MHVQNRNAKRDRIFVRVYNVMKRINSFINKNIKKSSTDSNYQLA-VFMLMETMFFIRFGKMKYLKENETVGLL 146 (314)
T ss_dssp EE-CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHH-HHHHHHHHHCCCCCCHHHHHHHCCCCST
T ss_pred ee-CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHH-HHHHHHhcCceecCChhhhhhcCCEeee
Confidence 99 99 9999999999999999999999999999999966665 777755 5555555 79999999999999999999
Q ss_pred cccccceEeecccCCCCcEEEEEeecCCceEEEEEeccchHHHHHHHHhhhccCCCccccccCChhHHHHHHHHhcCCCe
Q psy17743 266 SLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLT 345 (618)
Q Consensus 266 TLR~eHV~l~~~~d~~~~~V~FdFlGKdsir~~~~V~vD~~v~knL~~f~~~K~Pgd~LF~~l~s~~LN~yLkelm~glT 345 (618)
|||+|||++++ ++|+|+|+|||||+|+++|++|++||++|+.|++++.||++||+|+++++||+||+++ |||
T Consensus 147 TLr~eHV~l~~------~~v~fdF~GKdgi~~~~~v~dd~~l~k~l~~~~~~k~pg~~LF~~ld~~~vN~yL~e~--~~T 218 (314)
T 2h7g_X 147 TLKNKHIEISP------DKIVIKFVGKDKVSHEFVVHKSNRLYKPLLKLTDDSSPEEFLFNKLSERKVYESIKQF--GIR 218 (314)
T ss_dssp TCBGGGEEEET------TEEEEEEECGGGCEEEEEEETTSTTHHHHHHHCCTTCTTSBSSTTCCHHHHHHHHGGG--TSC
T ss_pred ccchhheEEEC------CEEEEEEeCCCCcEEEEEEeccHHHHHHHHHHHhCCCChHHhhcccChHHHHHHHHHC--CCe
Confidence 99999999998 8999999999999999999977999999999999999999999999999999999999 999
Q ss_pred eeeeccccchHHHHHHHh-hcCCCCccHHHHHHHHHHHHHHHHHHcCCCCCCCCchH
Q psy17743 346 AKVFRTYNASITLQQQLN-ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHD 401 (618)
Q Consensus 346 AKvFRTynASvt~~~~L~-~~~~~~~s~~ek~~~yn~Anr~VAilcNHqraV~K~~~ 401 (618)
||||||||||+||+++|+ ++...+.+..+|+..++.++ +||++|||||||||+|-
T Consensus 219 AKdFRTw~aSv~a~~~L~~~l~~~~~~~~~K~~i~~~~~-~VA~~lgnTpaV~R~~Y 274 (314)
T 2h7g_X 219 IKDLRTYGVNYTFLYNFWTNVKSISPLPSPKKLIALTIK-QTAEVVGHTPSISKRAY 274 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHH-HHHHHHTCCTTTHHHHS
T ss_pred eeeecCcchHHHHHHHHHHhccccCchHHHHHHHHHHHH-HHHHHhCCCCCCCcccc
Confidence 999999999999999994 32222223456776666666 99999999999999853
No 6
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP: d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A* 1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A* 1lpq_A* 1rr8_C* 1ej9_A*
Probab=99.97 E-value=7.1e-32 Score=294.98 Aligned_cols=130 Identities=68% Similarity=1.118 Sum_probs=118.4
Q ss_pred hccccceeeccC-CcC-------CCCC--ccchhhhheeeccCCCceEEEEEcCCCcccCccchHhHHHHHHHhHHHHHH
Q psy17743 462 KEENKTIALGTS-KLN-------YLDP--RISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKI 531 (618)
Q Consensus 462 ke~nk~vaLgTS-k~N-------Y~DP--RitVtWlkkw~vpI~~~~Kyv~l~~~s~~k~~~d~~kye~ar~Lk~~i~~I 531 (618)
-.++-+|++|-. +|- |=|= .+||+|++.|..+|+|+.+|+|++|||+++|++|+.|||+||+|+.+|++|
T Consensus 204 ~pedvtiNi~k~a~iP~pp~GhaWkdV~hd~tvtWia~w~~hIqGRkQY~Yh~~~s~wk~~rD~~Kfe~ar~l~~~Lp~I 283 (591)
T 1a31_A 204 MPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKI 283 (591)
T ss_dssp CGGGCEEECCTTSCCCCCSTTCCCSEEECCTTSCCSEEEECTTTCCEEEECBCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhccCCCCCcCCCCCCcceeccCCceEEEEeChHHhcCCeeEEEecCchHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 446667777763 443 3333 479999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccchhhhhhhheeeeeeeeehhhccCCCCCCCC-Cceeeeeceeeeceeecccc
Q psy17743 532 RENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEK 591 (618)
Q Consensus 532 r~~y~~~~~s~~~~~rq~a~a~y~Id~lAlr~g~ek~~de-adtvgccsLrvehi~l~~~~ 591 (618)
|++|.+||+|++|..||+|||+||||+||||||||+.++| +|||||||||+|||+|++++
T Consensus 284 R~~~~~dL~s~~~r~rqlAval~LID~~alRvGnekya~e~ndTvGl~TLR~eHV~l~~~~ 344 (591)
T 1a31_A 284 RNQYREDWKSKEMKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPEL 344 (591)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHCCCCCCCCCTTTSCCCCCGGGCBGGGCCEEEEE
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHhhhhcCCcccccccCCCeeeecccccceEEeccc
Confidence 9999999999999999999999999999999999999988 99999999999999999843
No 7
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=99.96 E-value=6.7e-31 Score=279.90 Aligned_cols=128 Identities=54% Similarity=0.943 Sum_probs=117.0
Q ss_pred hccccceeeccC-CcC-------CCCC--ccchhhhheeeccCCCceEEEEEcCCCcccCccchHhHHHHHHHhHHHHHH
Q psy17743 462 KEENKTIALGTS-KLN-------YLDP--RISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKI 531 (618)
Q Consensus 462 ke~nk~vaLgTS-k~N-------Y~DP--RitVtWlkkw~vpI~~~~Kyv~l~~~s~~k~~~d~~kye~ar~Lk~~i~~I 531 (618)
-.++-+|++|-. +|- |=|= .+||+|++.|.++|+|+.||||++|||++++++|+.|||+|++|+.+|++|
T Consensus 180 ~pedv~iNi~k~a~iP~p~~ghaWkdV~hd~~vtWia~w~~~IqGr~qYvy~~~~s~w~~~rd~~Kfer~~~f~~~Lp~I 259 (432)
T 2b9s_A 180 QPEDITINIGETAEVPVPPAGHKWAAVQHDHTVTWLAMWRDSVAGNMKYVMLAPSSSVKGQSDMVKFEKARKLKDKVDDI 259 (432)
T ss_dssp CGGGCEEECCTTSCCCCCCTTCCCSEEECCTTCCCSEEEECTTTCCEEEECBCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhhccCCCCCcCCCCCCcceeccCCceEEEeeChHHhcCCeeEEEecCcHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 446667777654 443 2222 469999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccchhhhhhhheeeeeeeeehhhccCCCCCCCCCceeeeeceeeeceeecc
Q psy17743 532 RENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHE 589 (618)
Q Consensus 532 r~~y~~~~~s~~~~~rq~a~a~y~Id~lAlr~g~ek~~deadtvgccsLrvehi~l~~ 589 (618)
|++|.+||+|+.|..||+|||+||||++|||+|||+.++|+|||||||||+|||+|++
T Consensus 260 R~~~~~dL~~~~~r~rqlAvav~LiD~~alRvGnekYa~endTvGl~TLR~eHV~l~~ 317 (432)
T 2b9s_A 260 RASYMEDFKSNDLHVAQRAVAMYFIDRLALRVGNEKGEDEADTVGCCSLRVEHIQLMP 317 (432)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHCCCCCCCCCTTSCCCCCGGGCBGGGEEECT
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHhhcccCCccccccCCCEeecccccccEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999998
No 8
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=99.76 E-value=1.8e-20 Score=151.35 Aligned_cols=41 Identities=39% Similarity=0.655 Sum_probs=30.4
Q ss_pred cccchhhccccceeeccCCcCCCCCccchhhhheeeccCCC
Q psy17743 456 EVQETDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQG 496 (618)
Q Consensus 456 ~~~~~~ke~nk~vaLgTSk~NY~DPRitVtWlkkw~vpI~~ 496 (618)
+.++++||+||+|||||||||||||||||+||++++|||+.
T Consensus 1 ~~~~~~k~~~K~vaLgTSKiNYlDPRItvaWcKr~~VPieK 41 (62)
T 2b9s_B 1 ENIIRIKDDNKAVSLGTSKINYIDPRIICSWAKAQDVPINK 41 (62)
T ss_dssp ----------CEECCHHHHHHTSCHHHHHHHHHHTTCCGGG
T ss_pred CchhhhhhhCeeEecccchhhccCchhhhhhhhhcCCCHHH
Confidence 35789999999999999999999999999999999999994
No 9
>2h7g_X DNA topoisomerase 1; type IB topoisomerase, DNA binding, protein-DNA complex, isomerase/DNA complex; HET: DNA; 1.90A {Variola virus} PDB: 2h7f_X* 3igc_A* 1a41_A
Probab=99.76 E-value=3.4e-20 Score=192.03 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=78.2
Q ss_pred CcccCccchHhHHHHHHHhHHHHHHHHHHHhcc-cchhhhhhhheeeeeeeeehhhccCCCCCCCCCceeeeeceeeece
Q psy17743 507 SKLKGEKDWQKYETARKLAKSINKIRENYQADW-KSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585 (618)
Q Consensus 507 s~~k~~~d~~kye~ar~Lk~~i~~Ir~~y~~~~-~s~~~~~rq~a~a~y~Id~lAlr~g~ek~~deadtvgccsLrvehi 585 (618)
+.+++++|+.|||++++|+.+|++||++|.+|| +|+.+..+|.||++||++.||||+|||+.++|+|||||||||+|||
T Consensus 74 ~~w~~~rd~~Kfe~~~~~~~~Lp~IR~~v~~dL~~~~~~r~~~aav~~lld~~~alRvGnekya~en~T~GltTLr~eHV 153 (314)
T 2h7g_X 74 KMHVQNRNAKRDRIFVRVYNVMKRINSFINKNIKKSSTDSNYQLAVFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHI 153 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCSTTCBGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhcCceecCChhhhhhcCCEeeeccchhhe
Confidence 445777889999999999999999999999999 8888999999989998888999999999999999999999999999
Q ss_pred eeccc
Q psy17743 586 QLHEE 590 (618)
Q Consensus 586 ~l~~~ 590 (618)
+|++.
T Consensus 154 ~l~~~ 158 (314)
T 2h7g_X 154 EISPD 158 (314)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99873
No 10
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A*
Probab=99.74 E-value=7.8e-20 Score=191.15 Aligned_cols=98 Identities=14% Similarity=0.238 Sum_probs=84.0
Q ss_pred CcccCccchHhHHHHHHHhHHHHHHHHHHHhcccch-hhhhhhheeeeeeeeehhhccCCCCCCCCCceeeeeceeeece
Q psy17743 507 SKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK-EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585 (618)
Q Consensus 507 s~~k~~~d~~kye~ar~Lk~~i~~Ir~~y~~~~~s~-~~~~rq~a~a~y~Id~lAlr~g~ek~~deadtvgccsLrvehi 585 (618)
..+++++|.+|||+|++|+.+|.+||+.|.+||+++ .+.++|+|+|+||||++|||+|||+.++|+|||||||||+|||
T Consensus 81 ~~w~~~rd~~Kfer~~~f~~~Lp~IR~~v~~dL~~~~~~r~rvlA~av~LlD~~~lRvGne~Ya~en~T~GltTLr~~HV 160 (346)
T 3m4a_A 81 PDFVQAGALKKWQRLTRFAGALPTLKVATTADLRASGLPPRKVMALMTRLLHVARFRVGSDIYARQHKTYGLSTLRQRHV 160 (346)
T ss_dssp GGGC---CCCHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCGGGCBGGGE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHhHHHHHHHHHHHhcccCCChhhhhhcCCcccccccHhhe
Confidence 357788999999999999999999999999999865 6689999999999999999999999999999999999999999
Q ss_pred eeccc-----------------chhhHHHHHhhhhh
Q psy17743 586 QLHEE-----------------KDEKKIYNKTQRAK 604 (618)
Q Consensus 586 ~l~~~-----------------~~~~~~~~~~~~~~ 604 (618)
+++++ ..+.++|..++++.
T Consensus 161 ~~~~~~v~f~F~GK~gi~~~~~v~D~~l~~~l~~~~ 196 (346)
T 3m4a_A 161 VVDGNTVTFRFKGKHGVSQHKATSDRTLAANMQKLL 196 (346)
T ss_dssp EEETTEEEEEEECGGGCEEEEEECCHHHHHHHHHHH
T ss_pred eeeCCEEEEEEecCCCCEEEEEECcHHHHHHHHHHH
Confidence 99873 22456776666654
No 11
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1
Probab=97.67 E-value=1.3e-05 Score=79.51 Aligned_cols=25 Identities=40% Similarity=0.800 Sum_probs=24.0
Q ss_pred ccchhhhheeeccCCCceEEEEEcC
Q psy17743 481 RISVTWLASWTENVQGQVKYIMLNP 505 (618)
Q Consensus 481 RitVtWlkkw~vpI~~~~Kyv~l~~ 505 (618)
.+|||||++|.++|+|++|||||||
T Consensus 199 DntvtWLA~W~enI~~~~KYV~Laa 223 (223)
T 1ois_A 199 DNTVQWLAMWRENIFNSFKYVRLAA 223 (223)
T ss_dssp CTTCCCSEEEECTTTCCEEEEEECC
T ss_pred CCCceEEEEeeeccCCceeEEEecC
Confidence 6899999999999999999999996
No 12
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi}
Probab=95.77 E-value=0.011 Score=56.72 Aligned_cols=126 Identities=22% Similarity=0.325 Sum_probs=89.0
Q ss_pred HHHHHHHhhhccccCCcccccccCccccccccccceEeecccCCCCcEEEEEeecCCceEEEEEeccchHHHHHHHHhhh
Q psy17743 237 AVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVE 316 (618)
Q Consensus 237 A~AlyLID~laLRvGnEkya~endTvG~cTLR~eHV~l~~~~d~~~~~V~FdFlGKdsir~~~~V~vD~~v~knL~~f~~ 316 (618)
.+++.|+-.+.+|+|. +|.|+.++|.+.. +.+.+. .+|.+..+ .|++.+.+...|..+.+
T Consensus 123 ~~~~~l~~~tGlR~~E-----------~~~L~~~di~~~~------~~i~i~-~~K~~~~r--~vpl~~~~~~~l~~~~~ 182 (292)
T 4a8e_A 123 RLILLLLYGAGLRVSE-----------LCNLRVEDVNFEY------GVIVVR-GGKGGKDR--VVPISESLLSEIKRYLE 182 (292)
T ss_dssp HHHHHHHHHSCCCHHH-----------HHHCBGGGEETTT------TEEEEC-CCSSSCCE--EEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHH-----------HHhCcHHhhhccC------CEEEEE-ecCCCcee--EEEcCHHHHHHHHHHHH
Confidence 4566777789999986 8999999998866 566554 47777655 67778899999999876
Q ss_pred c-cCCCcccc--------ccCChhHHHHHHHHhcC--C--CeeeeeccccchHHHHHHHhhcCCCCccHHHHHHHHHHHH
Q psy17743 317 N-KKGSDDLF--------DRLNTSVLNKHLSELME--G--LTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRAN 383 (618)
Q Consensus 317 ~-K~Pgd~LF--------~~l~s~~LN~yLkelm~--g--lTAKvFRTynASvt~~~~L~~~~~~~~s~~ek~~~yn~An 383 (618)
. ..+++.|| ..++...+|..++.+.. | +|..+||-..||.++. ... + .
T Consensus 183 ~~~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~H~lRht~at~l~~-----~g~---~-----------~ 243 (292)
T 4a8e_A 183 SRNDDSPYLFVEMKRKRKDKLSPKTVWRLVKKYGRKAGVELTPHQLRHSFATHMLE-----RGI---D-----------I 243 (292)
T ss_dssp TCCSCCSBSCEECCSSCSEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-----TTC---C-----------H
T ss_pred HhCcCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHHcCCCcCcccchhHHHHHHHH-----cCC---C-----------H
Confidence 5 46778899 56888999999998863 3 7888888766665543 111 1 2
Q ss_pred HHHHHHcCCCCC-CCCchH
Q psy17743 384 RAVAVLCNHQRS-VPKSHD 401 (618)
Q Consensus 384 r~VAilcNHqra-V~K~~~ 401 (618)
..|+.++||... +.+.|.
T Consensus 244 ~~i~~~lGH~~~~~t~~Y~ 262 (292)
T 4a8e_A 244 RIIQELLGHSNLSTTQIYT 262 (292)
T ss_dssp HHHHHHHCC-----CCCCS
T ss_pred HHHHHHcCCCCcchhhhhh
Confidence 368889999743 334443
No 13
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=95.18 E-value=0.064 Score=53.27 Aligned_cols=101 Identities=12% Similarity=0.189 Sum_probs=70.6
Q ss_pred HHHHHHHhhhccccCCcccccccCccccccccccceEeecccCCCCcEEEEEeecCCceEEEEEec-----cchHHHHHH
Q psy17743 237 AVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP-----VEKRVFKNL 311 (618)
Q Consensus 237 A~AlyLID~laLRvGnEkya~endTvG~cTLR~eHV~l~~~~d~~~~~V~FdFlGKdsir~~~~V~-----vD~~v~knL 311 (618)
..++.|+=.+.+|+|. +|.|+.++|. . +.|.+. .+|.+..+...+. +.+.+...|
T Consensus 200 ~~~~~l~~~tG~R~~E-----------~~~L~~~did--~------~~i~i~-~~K~~~~r~vpl~~~~~~l~~~l~~~l 259 (356)
T 1z1b_A 200 RLAMELAVVTGQRVGD-----------LCEMKWSDIV--D------GYLYVE-QSKTGVKIAIPTALHIDALGISMKETL 259 (356)
T ss_dssp HHHHHHHHHHCCCHHH-----------HTTCBGGGEE--T------TEEEEE-CTTTCCEEEEETTCEETTTTEEHHHHH
T ss_pred HHHHHHHHHhCcCHHH-----------HhcCcHHHcc--C------CeEEEE-ecCCCCceecccchhhhhhhHHHHHHH
Confidence 4566677778999986 8999999994 3 556554 4788766544433 224566777
Q ss_pred HHhhhccCCCccccc-----cCChhHHHHHHHHhc---------CCCeeeeeccccchHHHH
Q psy17743 312 QLFVENKKGSDDLFD-----RLNTSVLNKHLSELM---------EGLTAKVFRTYNASITLQ 359 (618)
Q Consensus 312 ~~f~~~K~Pgd~LF~-----~l~s~~LN~yLkelm---------~glTAKvFRTynASvt~~ 359 (618)
+.... ..+++.||- .++...+|..++.+. +.+|..+|||+ ||.++.
T Consensus 260 ~~~~~-~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~H~lR~~-at~l~~ 319 (356)
T 1z1b_A 260 DKCKE-ILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSL-SARLYE 319 (356)
T ss_dssp HHHHH-HTCSSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSBCCCTTHHHHH-HHHHHH
T ss_pred HHHHh-cCCCCceeeCCCCCcCChhHHHHHHHHHHHhcCCCcCCCCCChhhHHHH-HHHHHH
Confidence 77653 246778995 478889999998874 24899999986 665443
No 14
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=94.85 E-value=0.067 Score=51.62 Aligned_cols=119 Identities=13% Similarity=0.031 Sum_probs=81.9
Q ss_pred HHHHHHhhhccccCCcccccccCccccccccccceEeecccCCCCcEEEEEeecCCceEE----EEEeccchHHHHHHHH
Q psy17743 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRY----YNEVPVEKRVFKNLQL 313 (618)
Q Consensus 238 ~AlyLID~laLRvGnEkya~endTvG~cTLR~eHV~l~~~~d~~~~~V~FdFlGKdsir~----~~~V~vD~~v~knL~~ 313 (618)
+++.|+-.+.+|+|- +|.|+.++|.+.. ++.+.+. ||.+... ...|++.+.+...|..
T Consensus 143 ~~~~l~~~tGlR~~E-----------~~~L~~~di~~~~-----~~~i~i~--~k~~K~~~~~~~r~vpl~~~~~~~L~~ 204 (324)
T 1xo0_A 143 AFLGIAYNTLLKIAE-----------IARIRVKDISRTD-----GGRMLIH--IGRTKTLVSTAGVEKALSLGVTKLVER 204 (324)
T ss_dssp HHHHHHHHHCCCHHH-----------HHHCBGGGEEEEE-----TTEEEEE--ECCCCSSSSCSCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHH-----------HHhccHHHeeecc-----CCeEEEE--eecCCcCcCCCceEEecCccHHHHHHH
Confidence 455666678999986 8999999999875 2556654 4433321 1367778899999988
Q ss_pred hhhc----cCCCccccc--------------cCChhHHHHHHHHhcC--------------CCeeeeeccccchHHHHHH
Q psy17743 314 FVEN----KKGSDDLFD--------------RLNTSVLNKHLSELME--------------GLTAKVFRTYNASITLQQQ 361 (618)
Q Consensus 314 f~~~----K~Pgd~LF~--------------~l~s~~LN~yLkelm~--------------glTAKvFRTynASvt~~~~ 361 (618)
+.+. ..+++.||- .++...++..++.+.. .+|...||-..||.++.
T Consensus 205 ~~~~~~~~~~~~~~lF~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~H~lRht~at~l~~-- 282 (324)
T 1xo0_A 205 WISVSGVADDPNNYLFCRVRKNGVAAPSATSQLSTRALEGIFEATHRLIYGAKDDSGQRYLAWSGHSARVGAARDMAR-- 282 (324)
T ss_dssp HHHHHCGGGSTTSBSSCEECTTSCEECCSSCCCCHHHHHHHHHHHHHHHHCSCCCSCCSCSSCCTTHHHHHHHHHHHH--
T ss_pred HHHhcCCccCCCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHcCCCcccccccccccccchhhHHHHHHHHH--
Confidence 8763 246778993 4778889998888752 47888888766665543
Q ss_pred HhhcCCCCccHHHHHHHHHHHHHHHHHHcCCC
Q psy17743 362 LNELMDPDFSEAEKILAYNRANRAVAVLCNHQ 393 (618)
Q Consensus 362 L~~~~~~~~s~~ek~~~yn~Anr~VAilcNHq 393 (618)
... + ...|+.++||.
T Consensus 283 ---~g~---~-----------~~~i~~~lGH~ 297 (324)
T 1xo0_A 283 ---AGV---S-----------IPEIMQAGGWT 297 (324)
T ss_dssp ---TTC---C-----------HHHHHHHHTCS
T ss_pred ---CCC---C-----------HHHHHHHcCCC
Confidence 111 1 23688899996
No 15
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=94.71 E-value=0.078 Score=50.41 Aligned_cols=102 Identities=22% Similarity=0.257 Sum_probs=76.6
Q ss_pred HHHHHHHhhhccccCCcccccccCccccccccccceEeecccCCCCcEEEEEeecCCceEEEEEeccchHHHHHHHHhhh
Q psy17743 237 AVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVE 316 (618)
Q Consensus 237 A~AlyLID~laLRvGnEkya~endTvG~cTLR~eHV~l~~~~d~~~~~V~FdFlGKdsir~~~~V~vD~~v~knL~~f~~ 316 (618)
.+++.|+-.+.+|+|- +++|+.++|.+.+ +.+.+. ||.+..+ .|++.+.+...|..+..
T Consensus 134 ~~~~~l~~~tGlR~~E-----------i~~L~~~di~~~~------~~i~i~--~K~~~~r--~vpl~~~~~~~l~~~~~ 192 (290)
T 1a0p_A 134 KAMLEVLYATGLRVSE-----------LVGLTMSDISLRQ------GVVRVI--GKGNKER--LVPLGEEAVYWLETYLE 192 (290)
T ss_dssp HHHHHHHHHHCCCHHH-----------HTTCBGGGEETTT------TEEEEE--CSSSCEE--EEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHH-----------HHcCCHHHcCccc------CeEEEe--ccCCCce--EEECCHHHHHHHHHHHH
Confidence 4556666678999986 8999999998865 666665 8988755 66778889999988875
Q ss_pred cc-------CCCccccc-----cCChhHHHHHHHHhcC-------CCeeeeeccccchHHHH
Q psy17743 317 NK-------KGSDDLFD-----RLNTSVLNKHLSELME-------GLTAKVFRTYNASITLQ 359 (618)
Q Consensus 317 ~K-------~Pgd~LF~-----~l~s~~LN~yLkelm~-------glTAKvFRTynASvt~~ 359 (618)
.. .+++.||- .++...+|..++.+.. ++|..+||-..||.++.
T Consensus 193 ~~~~~~~~~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~h~lRht~at~l~~ 254 (290)
T 1a0p_A 193 HGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLN 254 (290)
T ss_dssp HTHHHHHTTCCCCBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred hccccccccCCCCceeeCCCCCCCCHHHHHHHHHHHHHHcCCCcCCCCchhhhhHHHHHHHH
Confidence 42 57788995 3788899999988752 37788888766665543
No 16
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=94.58 E-value=0.13 Score=46.18 Aligned_cols=100 Identities=13% Similarity=0.217 Sum_probs=71.1
Q ss_pred HHHHHHHHhhhccccCCcccccccCccccccccccceEeecccCCCCcEEEEEeecCCceEEEEEeccch-------HHH
Q psy17743 236 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEK-------RVF 308 (618)
Q Consensus 236 lA~AlyLID~laLRvGnEkya~endTvG~cTLR~eHV~l~~~~d~~~~~V~FdFlGKdsir~~~~V~vD~-------~v~ 308 (618)
..+++.|+-.+.+|+|- +|+|+.++|. . +.|.+. .+|.+..+. |++.+ .+.
T Consensus 23 ~~~~~~l~~~tGlR~~E-----------~~~L~~~di~--~------~~i~i~-~~K~~~~r~--vpl~~~~~~l~~~l~ 80 (179)
T 1ae9_A 23 LRLAMELAVVTGQRVGD-----------LCEMKWSDIV--D------GYLYVE-QSKTGVKIA--IPTALHIDALGISMK 80 (179)
T ss_dssp HHHHHHHHHHHCCCHHH-----------HHHCBGGGEE--T------TEEEEE-CTTTCCEEE--EETTCEEGGGTEEHH
T ss_pred HHHHHHHHHHhCchHHH-----------HhcCcHHHee--C------CeEEEE-EcCCCceee--eeCcHHHHHHHHHHH
Confidence 45667777778999986 8999999997 3 566663 488887654 55444 456
Q ss_pred HHHHHhhhccCCCccccc-----cCChhHHHHHHHHhc-----C----CCeeeeeccccchHHHH
Q psy17743 309 KNLQLFVENKKGSDDLFD-----RLNTSVLNKHLSELM-----E----GLTAKVFRTYNASITLQ 359 (618)
Q Consensus 309 knL~~f~~~K~Pgd~LF~-----~l~s~~LN~yLkelm-----~----glTAKvFRTynASvt~~ 359 (618)
..|+.... ..+++.||. .++++.++..++.++ + ++|..+|||| ||.++.
T Consensus 81 ~~l~~~~~-~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~H~lR~~-at~l~~ 143 (179)
T 1ae9_A 81 ETLDKCKE-ILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSL-SARLYE 143 (179)
T ss_dssp HHHHHHHH-HTCCSBSSCCTTSCCCCHHHHHHHHHHHHHHHTCCCSSSCCCTTHHHHH-HHHHHH
T ss_pred HHHHHhcc-cCCCCeEEEcCCCCcCChhHHHHHHHHHHHHcCCCCCCCCCCcchHHHH-HHHHHH
Confidence 66666543 246778995 478888999998874 2 5899999985 665443
No 17
>3nkh_A Integrase; alpha-fold, MRSA protein, structural genomics, PSI-2, protei structure initiative; 2.50A {Staphylococcus aureus subsp}
Probab=94.44 E-value=0.068 Score=50.54 Aligned_cols=121 Identities=18% Similarity=0.202 Sum_probs=83.5
Q ss_pred HHHHHHHHhhhccccCCcccccccCccccccccccceEeecccCCCCcEEEEEee----------------cCCceEEEE
Q psy17743 236 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFL----------------GKDSIRYYN 299 (618)
Q Consensus 236 lA~AlyLID~laLRvGnEkya~endTvG~cTLR~eHV~l~~~~d~~~~~V~FdFl----------------GKdsir~~~ 299 (618)
..+++.|+-.+.+|+|- +|.|+.++|.+.+ +.+.+.-. .|.+- -..
T Consensus 57 ~~~~~~l~~~tGlR~~E-----------~~~L~~~di~~~~------~~i~i~~~~~~~~~~~~~~~~~~~~Kt~~-~~r 118 (244)
T 3nkh_A 57 VALMTEFQALNGMRIGE-----------MLAIQNEDIDFDN------KSLNINGTIHWFHDESGGFGVKDTTKTES-SYR 118 (244)
T ss_dssp HHHHHHHHHHHCCCHHH-----------HHTCBGGGEETTT------TEEEECCEEEEEECTTSCEEEEECC---C-CCE
T ss_pred HHHHHHHHHHhCchHHH-----------HhcCcHHHcCccC------CeEEEeeEeeeccCCCccccccCCCCCCC-Cce
Confidence 45666777788999986 8899999998765 56665431 11110 035
Q ss_pred EeccchHHHHHHHHhhhcc----------CCCccccc-----cCChhHHHHHHHHhc-----C-CCeeeeeccccchHHH
Q psy17743 300 EVPVEKRVFKNLQLFVENK----------KGSDDLFD-----RLNTSVLNKHLSELM-----E-GLTAKVFRTYNASITL 358 (618)
Q Consensus 300 ~V~vD~~v~knL~~f~~~K----------~Pgd~LF~-----~l~s~~LN~yLkelm-----~-glTAKvFRTynASvt~ 358 (618)
.|.+.+.+...|..+.... .+++.||- .++.+.+|..++.+. + .+|..+||-.-||.++
T Consensus 119 ~vpl~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~gi~~~~~~H~lRht~at~l~ 198 (244)
T 3nkh_A 119 TIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLS 198 (244)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHCTTCCCCSBSSBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCSHHHHHHHHHHHHH
T ss_pred eEecCHHHHHHHHHHHHHHHHhhhccccCCCCCeEEECCCCCCCchhhHHHHHHHHHHHcCCCCCceeecchHHHHHHHH
Confidence 6788899999998887532 57888996 488999999999985 2 4788888876666544
Q ss_pred HHHHhhcCCCCccHHHHHHHHHHHHHHHHHHcCCC
Q psy17743 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQ 393 (618)
Q Consensus 359 ~~~L~~~~~~~~s~~ek~~~yn~Anr~VAilcNHq 393 (618)
. ... + ...|+.++||.
T Consensus 199 ~-----~g~---~-----------~~~i~~~lGH~ 214 (244)
T 3nkh_A 199 Q-----QGV---S-----------LKAIMDRVGHS 214 (244)
T ss_dssp H-----TTC---C-----------HHHHHHHHCST
T ss_pred H-----cCC---C-----------HHHHHHHhCCC
Confidence 3 111 1 23578889996
No 18
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=92.88 E-value=0.34 Score=45.95 Aligned_cols=99 Identities=13% Similarity=0.225 Sum_probs=69.0
Q ss_pred HHHHHHHHhhhccccCCcccccccCccccccccccceEeecccCCCCcEEEEEeecCCceEEEEEeccchH-------HH
Q psy17743 236 RAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKR-------VF 308 (618)
Q Consensus 236 lA~AlyLID~laLRvGnEkya~endTvG~cTLR~eHV~l~~~~d~~~~~V~FdFlGKdsir~~~~V~vD~~-------v~ 308 (618)
...++.|+=.+.+|+|. +|.|+.++|. . +.|.+. .+|.+..+. |++.+. +.
T Consensus 126 ~~~~~~l~~~tGlR~~E-----------~~~L~~~di~--~------~~i~i~-~~K~~~~r~--vpl~~~~~~l~~~l~ 183 (283)
T 1z19_A 126 LRLAMELAVVTGQRVGD-----------LCEMKWSDIV--D------GYLYVE-QSKTGVKIA--IPTALHIDALGISMK 183 (283)
T ss_dssp HHHHHHHHHHSCCCHHH-----------HTTCBGGGEE--T------TEEEEE-CTTTCCEEE--EETTCEETTTTEEHH
T ss_pred HHHHHHHHHHhCcCHHH-----------HhcCCHHHhc--C------CeEEEe-ecCCCCcee--eecChhhhhhhHHHH
Confidence 34566677788999986 8999999995 3 556554 588877654 554443 45
Q ss_pred HHHHHhhhccCCCccccc-----cCChhHHHHHHHHhc---------CCCeeeeeccccchHHH
Q psy17743 309 KNLQLFVENKKGSDDLFD-----RLNTSVLNKHLSELM---------EGLTAKVFRTYNASITL 358 (618)
Q Consensus 309 knL~~f~~~K~Pgd~LF~-----~l~s~~LN~yLkelm---------~glTAKvFRTynASvt~ 358 (618)
..|..+.. ..+++.||- .++.+.+|..++.+. +.+|..+|||| ||.++
T Consensus 184 ~~l~~~~~-~~~~~~lF~~~~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~H~lR~~-at~l~ 245 (283)
T 1z19_A 184 ETLDKCKE-ILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSL-SARLY 245 (283)
T ss_dssp HHHHHHHH-HHCSSBSSCCTTSSCCCHHHHHHHHHHHHHHTTCCCSSSCCCGGGHHHH-HHHHH
T ss_pred HHHHHHHH-hCCCCceEeCCCCCcCChhhHHHHHHHHHHHcCCCccCCCCCcchHHHH-HHHHH
Confidence 55665543 235678885 478889999998874 24899999986 66543
No 19
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=89.06 E-value=0.071 Score=43.45 Aligned_cols=24 Identities=38% Similarity=0.775 Sum_probs=21.2
Q ss_pred hhHHHHHhhhhhhhhhhhhccccccC
Q psy17743 593 EKKIYNKTQRAKFRWAIDMATADFVF 618 (618)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (618)
=.++|+++||-+|.||+++ .||.|
T Consensus 39 ieKif~ktlr~KF~WA~~~--~~~~F 62 (62)
T 2b9s_B 39 INKIFSATIQKKFPWAMNA--ENFDF 62 (62)
T ss_dssp GGGTSCHHHHHHCTTTTTC--CSCCC
T ss_pred HHHHhhHHHHHhhhhhhcC--CCccC
Confidence 3578999999999999988 79887
No 20
>2a3v_A Site-specific recombinase INTI4; protein-DNA complex, recombination; HET: DNA; 2.80A {Vibrio cholerae o1 biovar eltor str}
Probab=87.36 E-value=1.2 Score=43.60 Aligned_cols=102 Identities=22% Similarity=0.275 Sum_probs=71.1
Q ss_pred HHHHHHhhhccccCCcccccccCccccccccccceEeecccCCCCcEEEEEeecCCceEEEEEeccchHHHHHHHHhhhc
Q psy17743 238 VALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVEN 317 (618)
Q Consensus 238 ~AlyLID~laLRvGnEkya~endTvG~cTLR~eHV~l~~~~d~~~~~V~FdFlGKdsir~~~~V~vD~~v~knL~~f~~~ 317 (618)
+++.|+-.+.||+|- +|.|+.++|.+.. +.|.+. .||.+..+ .|++.+.+...|+...+.
T Consensus 124 ~~~~l~~~tGlR~~E-----------l~~L~~~did~~~------~~i~i~-~~K~~k~R--~vpl~~~~~~~L~~~~~~ 183 (320)
T 2a3v_A 124 LPIKLLYGSGLRLME-----------CMRLRVQDIDFDY------GAIRIW-QGKGGKNR--TVTLAKELYPHLKEQIAL 183 (320)
T ss_dssp HHHHHHHHSCCCHHH-----------HHTCBGGGEETTT------TEEEEE-EETTTEEE--EEECCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHH-----------HHcCcHHHCCCCC------CeEEEe-cCCCCCce--eeeCCHHHHHHHHHHHHH
Confidence 455666678999987 9999999998866 677664 47887654 667778888888765421
Q ss_pred -------c----------CC---------------Cccccc----------------cCChhHHHHHHHHhcC------C
Q psy17743 318 -------K----------KG---------------SDDLFD----------------RLNTSVLNKHLSELME------G 343 (618)
Q Consensus 318 -------K----------~P---------------gd~LF~----------------~l~s~~LN~yLkelm~------g 343 (618)
. .| .+.||. .++...+|..++.+.. .
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lF~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~agi~~~ 263 (320)
T 2a3v_A 184 AKRYYDRDLHQKNYGGVWLPTALKEKYPNAPYEFRWHYLFPSFQLSLDPESDVMRRHHMNETVLQKAVRRSAQEAGIEKT 263 (320)
T ss_dssp HHHHHHHHTSCTTBCCSCCSTTCTTTSTTGGGCGGGSBSSBCSSCEEETTTTEEECCBCCHHHHHHHHHHHHHTTCCCSC
T ss_pred hhhhhcccccccccccccccchhhcccccccccccccceeeccccccCcccCccccccCCHHHHHHHHHHHHHHcCCCCC
Confidence 0 01 145774 2667789999988742 3
Q ss_pred CeeeeeccccchHHHH
Q psy17743 344 LTAKVFRTYNASITLQ 359 (618)
Q Consensus 344 lTAKvFRTynASvt~~ 359 (618)
+|..+||--.||.++.
T Consensus 264 ~~~H~lRHT~At~l~~ 279 (320)
T 2a3v_A 264 VTCHTLRHSFATHLLE 279 (320)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCcCcchHHHHHHHHH
Confidence 7788888777776553
No 21
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=82.65 E-value=1.4 Score=39.32 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=69.0
Q ss_pred hHHHHHHHHHhhhccccCCcccccccCccccccccccceEeecccCCCCcEEEEEeecCCceEEEEEeccchHHHHHHHH
Q psy17743 234 RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQL 313 (618)
Q Consensus 234 RqlA~AlyLID~laLRvGnEkya~endTvG~cTLR~eHV~l~~~~d~~~~~V~FdFlGKdsir~~~~V~vD~~v~knL~~ 313 (618)
+..++++.|+-.+.+|+|. +|+|+.++|. . +.+.+. .+|.+.. ..|.+.+.+...|+.
T Consensus 25 ~~~~~~~~l~~~tG~R~~E-----------~~~L~~~di~--~------~~i~~~-~~K~~~~--r~vpl~~~~~~~l~~ 82 (170)
T 1aih_A 25 PDLGLIVRICLATGARWSE-----------AETLTQSQVM--P------YKITFT-NTKSKKN--RTVPISDELFDMLPK 82 (170)
T ss_dssp TTHHHHHHHHHHHCCCHHH-----------HHTCBTTTEE--T------TEEEEE-SSSSSCE--EEEECCHHHHHHSCC
T ss_pred hhHHHHHHHHHHhCCcHHH-----------HHhCCHHHcC--C------CeEEee-cccCCCc--ceeeCCHHHHHHHHH
Confidence 3456677788889999986 8899999984 2 455553 5788764 467777888777765
Q ss_pred hhhccCCCccccccCChhHHHHHHHHhc---C-CCeeeeeccccchHHH
Q psy17743 314 FVENKKGSDDLFDRLNTSVLNKHLSELM---E-GLTAKVFRTYNASITL 358 (618)
Q Consensus 314 f~~~K~Pgd~LF~~l~s~~LN~yLkelm---~-glTAKvFRTynASvt~ 358 (618)
. .+.||.. ....++.+++..- + ++|..+||-..||.++
T Consensus 83 ~------~~~lF~~-~~~~~~~~~~~~g~~~~~~~~~H~lRht~at~l~ 124 (170)
T 1aih_A 83 K------RGRLFND-AYESFENAVLRAEIELPKGQLTHVLRHTFASHFM 124 (170)
T ss_dssp C------SSBSSCC-CHHHHHHHHHHTTCCCCTTCTTTHHHHHHHHHHH
T ss_pred H------hhhccCc-cHHHHHHHHHHhccCCCCCCcchHhHHHHHHHHH
Confidence 5 3578875 4567888888874 2 4888888877666544
No 22
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=60.64 E-value=11 Score=33.64 Aligned_cols=62 Identities=29% Similarity=0.415 Sum_probs=43.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CC--CcccHHHHHHHHHHHHHHHHHhcccchhh
Q psy17743 401 DKSMGNLKEKISNKRKQVKDAERALKDAKKA----GE--SKAMTDKKKTALGRLKEQLLKLEVQETDK 462 (618)
Q Consensus 401 ~~~m~k~~~ki~~~~~~~~~~~~~l~~~~~~----~k--~~~~~e~~~~~~~~~~~~i~k~~~~~~~k 462 (618)
-..|++|++.|...+.||-.+.+.|+.|.+. .- .+.++.+-...+..++++|..++.++-|.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888988999999999889888532 11 12355666666777777777777776653
No 23
>1vcc_A DNA topoisomerase I; DNA binding; HET: DNA; 1.60A {Vaccinia virus} SCOP: d.121.1.1
Probab=59.46 E-value=1.7 Score=36.54 Aligned_cols=48 Identities=17% Similarity=0.421 Sum_probs=33.4
Q ss_pred CCCCCCCCccchhhhccCCCCCCCCCCCCCcceeeeCCceeEEeeccCCcC----------CceeEEE
Q psy17743 132 GKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQ----------GQVKYIM 189 (618)
Q Consensus 132 G~~k~RI~pedv~iN~~k~a~IPpp~~GhaWkdV~hdntvtWla~w~~hIq----------Gr~QYvy 189 (618)
-.+..+|..+.-+-++.+...||+ --++|+ -.=-.+.+..+ ||+||.|
T Consensus 15 ~~~t~~V~~~Np~yeil~~~kiP~-----hL~dV~-----vyeqt~eea~~~lIfvG~DSKgrkQYFY 72 (77)
T 1vcc_A 15 NNFLNPVSDDNPAYEVLQHVKIPT-----HLTDVV-----VYEQTWEEALTRLIFVGSDSKGRRQYFY 72 (77)
T ss_dssp TTSCSBCCTTCTHHHHHHHCCCCT-----TCEEEE-----EECCCHHHHTTSEEEEEECTTSCEEEEE
T ss_pred hhhccccCCCChHHHHHHhccCCc-----ccceEE-----EeeecHHHhhCceEEEeecCCCceeeee
Confidence 345788988888899999999998 567771 11122333333 9999999
No 24
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=50.56 E-value=74 Score=28.94 Aligned_cols=12 Identities=50% Similarity=0.587 Sum_probs=7.7
Q ss_pred cchHHHHHHHhh
Q psy17743 353 NASITLQQQLNE 364 (618)
Q Consensus 353 nASvt~~~~L~~ 364 (618)
|.|.+++.+|..
T Consensus 25 N~T~lLq~qLTq 36 (121)
T 3mq7_A 25 NVTHLLQQELTE 36 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 556677777753
No 25
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=48.81 E-value=20 Score=30.45 Aligned_cols=63 Identities=21% Similarity=0.379 Sum_probs=43.2
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CC--CcccHHHHHHHHHHHHHHHHHhcccchhh
Q psy17743 400 HDKSMGNLKEKISNKRKQVKDAERALKDAKKA----GE--SKAMTDKKKTALGRLKEQLLKLEVQETDK 462 (618)
Q Consensus 400 ~~~~m~k~~~ki~~~~~~~~~~~~~l~~~~~~----~k--~~~~~e~~~~~~~~~~~~i~k~~~~~~~k 462 (618)
|-..|+.|++.|...+.||-.+.+.|+.|... .- .+.++.+-...+..++.+|..++.++-+.
T Consensus 3 ~M~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elkrqlAd~ 71 (78)
T 2ic6_A 3 HMSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (78)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568889999999999999999989887532 11 12355566666777777777777766553
No 26
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=47.00 E-value=75 Score=29.25 Aligned_cols=70 Identities=14% Similarity=0.337 Sum_probs=44.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccH---------HHHHHHHHHHHHHHHHhcccchhhccccceeec
Q psy17743 401 DKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMT---------DKKKTALGRLKEQLLKLEVQETDKEENKTIALG 471 (618)
Q Consensus 401 ~~~m~k~~~ki~~~~~~~~~~~~~l~~~~~~~k~~~~~---------e~~~~~~~~~~~~i~k~~~~~~~ke~nk~vaLg 471 (618)
...+++|++.++.+.....++.+.++.|+..|-.+.+. ..++.+|..|+++|...++--.. ....|.+|
T Consensus 9 ~~g~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a~vi~~~--~~~~V~~G 86 (156)
T 2f23_A 9 KAGYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAVILEEG--SGEVIGLG 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCTT--CSCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcccCCC--CCCEEEeC
Confidence 45678888888886667777888888887655443322 34456777777777776653222 23457776
Q ss_pred c
Q psy17743 472 T 472 (618)
Q Consensus 472 T 472 (618)
+
T Consensus 87 s 87 (156)
T 2f23_A 87 S 87 (156)
T ss_dssp C
T ss_pred c
Confidence 5
No 27
>1ysm_A Calcyclin-binding protein; helix-turn-helix, metal binding protein; NMR {Mus musculus} SCOP: a.2.16.1
Probab=45.44 E-value=42 Score=28.21 Aligned_cols=57 Identities=12% Similarity=0.272 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHh----cccchhhccccceee
Q psy17743 410 KISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKL----EVQETDKEENKTIAL 470 (618)
Q Consensus 410 ki~~~~~~~~~~~~~l~~~~~~~k~~~~~e~~~~~~~~~~~~i~k~----~~~~~~ke~nk~vaL 470 (618)
.+++++.+++|++.=|..|+ .....+.+...|.+++..|..+ +.+...-++.+..|+
T Consensus 4 ~~eeL~~DLeEl~~Ll~~Ak----R~rVk~~L~~ei~~lE~ei~~~~~~~~~~~~~~~~~~~~~~ 64 (77)
T 1ysm_A 4 VLEELQKDLEEVKVLLEKST----RKRLRDTLTSEKSKIETELKNKMQQKSQKKPELDNEKPAAV 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----TTTHHHHHHHHHHHHHHHHHHHHHSSTTCCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHcc----cHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccCCccc
Confidence 36777777777766555553 3345567788888888888876 444444456666555
No 28
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=44.70 E-value=19 Score=37.79 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=34.4
Q ss_pred chHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHh
Q psy17743 399 SHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKL 455 (618)
Q Consensus 399 ~~~~~m~k~~~ki~~~~~~~~~~~~~l~~~~~~~k~~~~~e~~~~~~~~~~~~i~k~ 455 (618)
++++.++.++++++.+..++.+++..+.+-..+.|.......++++++.++.+|...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 244 NFDEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888889999999988888888777432221111122334445555555555443
No 29
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=44.47 E-value=60 Score=28.87 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=43.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHhcccchhhccc
Q psy17743 401 DKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEEN 465 (618)
Q Consensus 401 ~~~m~k~~~ki~~~~~~~~~~~~~l~~~~~~~k~~~~~e~~~~~~~~~~~~i~k~~~~~~~ke~n 465 (618)
-=++.-|+++++++.+.+.+++++++.-.+ ..+.++..+..+..++..++-++..+|+.
T Consensus 29 ~YqVdlLKD~LEe~eE~~aql~Re~~eK~r------e~e~~Kr~~~~L~~~~~~lk~~L~qRD~L 87 (103)
T 4h22_A 29 MYQVDTLKDMLLELEEQLAESRRQYEEKNK------EFEREKHAHSILQFQFAEVKEALKQREEM 87 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888877765432 35777788888888888888888777764
No 30
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=42.48 E-value=27 Score=31.45 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CC--CcccHHHHHHHHHHHHHHHHHhcccchhh
Q psy17743 403 SMGNLKEKISNKRKQVKDAERALKDAKKA----GE--SKAMTDKKKTALGRLKEQLLKLEVQETDK 462 (618)
Q Consensus 403 ~m~k~~~ki~~~~~~~~~~~~~l~~~~~~----~k--~~~~~e~~~~~~~~~~~~i~k~~~~~~~k 462 (618)
.++.|++.|...+.||-.+.+.|+.|.+. .- .+.++.+-...+..++.+|..|+.++.+.
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~ 88 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLADR 88 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999887532 11 12355555666777777777777766654
No 31
>3gs2_B Chromobox protein homolog 7; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens}
Probab=41.78 E-value=7.9 Score=27.36 Aligned_cols=10 Identities=40% Similarity=0.843 Sum_probs=9.2
Q ss_pred CCCcccccCC
Q psy17743 117 EPPGLFRGRG 126 (618)
Q Consensus 117 epPGlfRgRG 126 (618)
.|+|+||.||
T Consensus 21 ~p~gff~~~~ 30 (30)
T 3gs2_B 21 AAEGFFRDRS 30 (30)
T ss_dssp CSTTTSCCCC
T ss_pred CCccccccCC
Confidence 6999999998
No 32
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=41.76 E-value=56 Score=31.22 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC-CcccHHHHHHHHHHHHHHHHHhcccchhhccccceeecc
Q psy17743 408 KEKISNKRKQVKDAERALKDAKKAGE-SKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGT 472 (618)
Q Consensus 408 ~~ki~~~~~~~~~~~~~l~~~~~~~k-~~~~~e~~~~~~~~~~~~i~k~~~~~~~ke~nk~vaLgT 472 (618)
..++.+++.++...+.+|..+-...+ ....++++.++|..+..++....++...+=...-|++|+
T Consensus 84 r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~KeGip~g~ 149 (175)
T 3lay_A 84 YTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIPRGA 149 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 33444555556666666666543333 234667777777877777776655544432222666654
No 33
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=41.40 E-value=98 Score=23.78 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=32.8
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHhccc
Q psy17743 400 HDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQ 458 (618)
Q Consensus 400 ~~~~m~k~~~ki~~~~~~~~~~~~~l~~~~~~~k~~~~~e~~~~~~~~~~~~i~k~~~~ 458 (618)
|..+.++++..+...+......+.++..++. ...+....+..+.+.|.+++.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~------~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 3 FANTKKTLENQVEELTEKCSLKTDEFLKAKE------KINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777776666666666543 2344455566666666666544
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.01 E-value=69 Score=29.42 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHhcccc
Q psy17743 402 KSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQE 459 (618)
Q Consensus 402 ~~m~k~~~ki~~~~~~~~~~~~~l~~~~~~~k~~~~~e~~~~~~~~~~~~i~k~~~~~ 459 (618)
++++.+...|..++.++..++-++..+.+ ..+.+++++..+..++.+|+..+
T Consensus 82 ~~l~~~~kE~~~lK~el~~~~~k~e~~~~------e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIAAQIKAESSAK------EIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333332 34666777777777777776443
No 35
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=40.26 E-value=1e+02 Score=28.64 Aligned_cols=72 Identities=10% Similarity=0.196 Sum_probs=40.1
Q ss_pred HHhHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCccc---------HHHHHHHHHHHHHHHHHhcccchhhccccceee
Q psy17743 401 DKSMGNLKEKISNKRK-QVKDAERALKDAKKAGESKAM---------TDKKKTALGRLKEQLLKLEVQETDKEENKTIAL 470 (618)
Q Consensus 401 ~~~m~k~~~ki~~~~~-~~~~~~~~l~~~~~~~k~~~~---------~e~~~~~~~~~~~~i~k~~~~~~~ke~nk~vaL 470 (618)
....++|++.++.|+. ...++.+.++.|+..|-.+.+ ...++.+|..|+.+|...++--...-....|.+
T Consensus 8 ~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~vid~~~~~~~~V~~ 87 (158)
T 2p4v_A 8 REGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFF 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCSSSCSSCSS
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCeecCCccCCCCEEec
Confidence 3567888888888854 566666777777654443222 223445555555555555442222222345666
Q ss_pred cc
Q psy17743 471 GT 472 (618)
Q Consensus 471 gT 472 (618)
|+
T Consensus 88 Gs 89 (158)
T 2p4v_A 88 GA 89 (158)
T ss_dssp SC
T ss_pred cE
Confidence 64
No 36
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=39.51 E-value=27 Score=30.70 Aligned_cols=61 Identities=20% Similarity=0.375 Sum_probs=42.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CC--CcccHHHHHHHHHHHHHHHHHhcccchhh
Q psy17743 402 KSMGNLKEKISNKRKQVKDAERALKDAKKA----GE--SKAMTDKKKTALGRLKEQLLKLEVQETDK 462 (618)
Q Consensus 402 ~~m~k~~~ki~~~~~~~~~~~~~l~~~~~~----~k--~~~~~e~~~~~~~~~~~~i~k~~~~~~~k 462 (618)
..|+.|++.|...+.||-.+.+.|+.|... .- .+.++.+-...+..++.+|..|+.++.+.
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~ 71 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADL 71 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999989887532 11 12345555666677777777777666653
No 37
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=36.60 E-value=74 Score=27.35 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q psy17743 438 TDKKKTALGRLKEQLLKLEV 457 (618)
Q Consensus 438 ~e~~~~~~~~~~~~i~k~~~ 457 (618)
++.++++|++++.+|..|+.
T Consensus 60 i~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 60 IERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 35567778888888887765
No 38
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.04 E-value=24 Score=30.32 Aligned_cols=56 Identities=13% Similarity=0.133 Sum_probs=38.4
Q ss_pred hHHHHHHHcccccccccccccCCCcHHHHHHHHhhHHHHHcCCHHHHHHHHHHHHHHhccccEEE
Q psy17743 39 FMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCT 103 (618)
Q Consensus 39 Ff~d~~~~l~~~~~~~i~~~~kcDF~~i~~~~~~~~e~kk~~t~eEK~~~k~~~~~~~~~y~~~~ 103 (618)
|..++|..+..+ .+.|++|..-+..--|.=++||.+||+.=.++.+++.+.|+--+
T Consensus 21 F~~e~R~~ik~e---------~~~~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~ 76 (93)
T 2cto_A 21 FVQEKIPELRRR---------GLPVARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDP 76 (93)
T ss_dssp HHHTTHHHHHHH---------TCCCSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccc
Confidence 556666665432 35566666555444677789999999988887777878886544
No 39
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=33.25 E-value=1.3e+02 Score=25.15 Aligned_cols=60 Identities=17% Similarity=0.256 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH---hhcCCC-------------cccHHHHHHHHHHHHHHHHHhcccchh
Q psy17743 402 KSMGNLKEKISNKRKQVKDAERALKDA---KKAGES-------------KAMTDKKKTALGRLKEQLLKLEVQETD 461 (618)
Q Consensus 402 ~~m~k~~~ki~~~~~~~~~~~~~l~~~---~~~~k~-------------~~~~e~~~~~~~~~~~~i~k~~~~~~~ 461 (618)
+.++.+..++..++.++.+++.-++.+ ..+.+. ....+.++++++.++..|+.++-+...
T Consensus 15 ~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~ 90 (107)
T 1fxk_A 15 QQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEER 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666655555433332 222210 113345555555555555555554443
No 40
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=32.94 E-value=1.2e+02 Score=26.13 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17743 404 MGNLKEKISNKRKQVKDAERALKDAKKA 431 (618)
Q Consensus 404 m~k~~~ki~~~~~~~~~~~~~l~~~~~~ 431 (618)
.+.++.+|..|+.++..+.+++..+...
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888888888888888877653
No 41
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=32.81 E-value=1.4e+02 Score=25.30 Aligned_cols=26 Identities=12% Similarity=0.291 Sum_probs=13.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17743 402 KSMGNLKEKISNKRKQVKDAERALKD 427 (618)
Q Consensus 402 ~~m~k~~~ki~~~~~~~~~~~~~l~~ 427 (618)
+.++.+..+|..++.++.+++.-++.
T Consensus 20 ~~~~~l~~q~~~l~~~~~e~~~~~~e 45 (117)
T 2zqm_A 20 QQLQLVVQQKQKVQLELTEAKKALDE 45 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555543333
No 42
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=27.84 E-value=62 Score=30.49 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCcccHHHHHHHHHHHHHHHH
Q psy17743 375 KILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG-ESKAMTDKKKTALGRLKEQLL 453 (618)
Q Consensus 375 k~~~yn~Anr~VAilcNHqraV~K~~~~~m~k~~~ki~~~~~~~~~~~~~l~~~~~~~-k~~~~~e~~~~~~~~~~~~i~ 453 (618)
|.......++.|..-| |+.+.|-++-.++-+.++.+|+.+...|+.|.... -...++.++++.|.++++.|.
T Consensus 43 k~~eLEeeL~~v~~nl-------KsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 43 KSAELEEELKTVTNNL-------KSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh-------ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566665322 56777777777777777777777777777663211 112356677777777777766
Q ss_pred Hh
Q psy17743 454 KL 455 (618)
Q Consensus 454 k~ 455 (618)
.-
T Consensus 116 ~~ 117 (155)
T 2efr_A 116 AQ 117 (155)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.52 E-value=1.1e+02 Score=32.72 Aligned_cols=16 Identities=13% Similarity=0.233 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHhccc
Q psy17743 443 TALGRLKEQLLKLEVQ 458 (618)
Q Consensus 443 ~~~~~~~~~i~k~~~~ 458 (618)
++++.++.+|++++..
T Consensus 565 ~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 565 QETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 44
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=27.29 E-value=2.4e+02 Score=25.94 Aligned_cols=71 Identities=15% Similarity=0.274 Sum_probs=42.8
Q ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCcccH---------HHHHHHHHHHHHHHHHhcccchhhc-cccceee
Q psy17743 402 KSMGNLKEKISNKRK-QVKDAERALKDAKKAGESKAMT---------DKKKTALGRLKEQLLKLEVQETDKE-ENKTIAL 470 (618)
Q Consensus 402 ~~m~k~~~ki~~~~~-~~~~~~~~l~~~~~~~k~~~~~---------e~~~~~~~~~~~~i~k~~~~~~~ke-~nk~vaL 470 (618)
...++|++.++.|+. ...++...++.|+..|-.+.+. -.++.+|..|+++|...++--.... ....|.+
T Consensus 9 ~g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a~vid~~~~~~~~~V~~ 88 (158)
T 1grj_A 9 RGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIF 88 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECGGGSCCCSBCCT
T ss_pred HHHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhCeecCccccCCCCEEEe
Confidence 467888888888876 5566666777776555433332 2234567777777777665333222 2445666
Q ss_pred cc
Q psy17743 471 GT 472 (618)
Q Consensus 471 gT 472 (618)
|+
T Consensus 89 Gs 90 (158)
T 1grj_A 89 GA 90 (158)
T ss_dssp TC
T ss_pred Cc
Confidence 65
No 45
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=26.63 E-value=1.6e+02 Score=27.02 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHhcccchh
Q psy17743 404 MGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETD 461 (618)
Q Consensus 404 m~k~~~ki~~~~~~~~~~~~~l~~~~~~~k~~~~~e~~~~~~~~~~~~i~k~~~~~~~ 461 (618)
.+.|...|+++...+..++.+|..++- ..+..++.++.+.+++..|+.+...
T Consensus 77 ~~~L~~~l~~~~kE~~~lK~el~~~~~------k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDLKHELIAAQI------KAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555544431 2466677777777777777666544
No 46
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.52 E-value=1.3e+02 Score=25.74 Aligned_cols=22 Identities=14% Similarity=0.454 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy17743 407 LKEKISNKRKQVKDAERALKDA 428 (618)
Q Consensus 407 ~~~ki~~~~~~~~~~~~~l~~~ 428 (618)
++..+..++.++..+++.+..+
T Consensus 22 L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 22 ITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333344444444333
No 47
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=26.15 E-value=1e+02 Score=25.34 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=25.7
Q ss_pred CCCCCchHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHhcc
Q psy17743 394 RSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEV 457 (618)
Q Consensus 394 raV~K~~~~~m~k~~~ki~~~~~~~~~~~~~l~~~~~~~k~~~~~e~~~~~~~~~~~~i~k~~~ 457 (618)
|.+|-+-..+++.+.+.|..+...+.+++.+|... ...|+.+..+|.|...
T Consensus 3 ~~~~~~~~~~~e~~~~~i~~Kde~I~eLE~~L~~k-------------d~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 3 PGIPGSTSELEEDFAKILMLKEERIKELEKRLSEK-------------EEEIQELKRKLHKCQS 53 (67)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHC-
T ss_pred CCCCCcchHHHHHHHHHHHccHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHH
Confidence 55677777788888888888888888888776443 3556666677766654
No 48
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.64 E-value=2.4e+02 Score=21.97 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=23.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHh
Q psy17743 401 DKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKL 455 (618)
Q Consensus 401 ~~~m~k~~~ki~~~~~~~~~~~~~l~~~~~~~k~~~~~e~~~~~~~~~~~~i~k~ 455 (618)
+.....++..+..+..+-..|...|++++ .+|.+++++|++|
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR-------------~el~~Lkeele~L 49 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEAR-------------QQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHh
Confidence 33444455555555444444555555543 5667777777665
No 49
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=25.29 E-value=1.6e+02 Score=23.54 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHHHHHHHh
Q psy17743 437 MTDKKKTALGRLKEQLLKL 455 (618)
Q Consensus 437 ~~e~~~~~~~~~~~~i~k~ 455 (618)
.+.+.+..+.++++.|++|
T Consensus 49 evkkveeevkkleeeikkl 67 (67)
T 1lq7_A 49 EVKKVEEEVKKLEEEIKKL 67 (67)
T ss_dssp THHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHhcC
Confidence 3566677778888888764
No 50
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=23.61 E-value=65 Score=26.69 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHhhcC-CCcccHHHHHHHHHHHHHHHHHhcc
Q psy17743 404 MGNLKEKISNKRKQVK-------DAERALKDAKKAG-ESKAMTDKKKTALGRLKEQLLKLEV 457 (618)
Q Consensus 404 m~k~~~ki~~~~~~~~-------~~~~~l~~~~~~~-k~~~~~e~~~~~~~~~~~~i~k~~~ 457 (618)
|..++.||..++.+.. .++..++.+.... +....+..+.++|..+++.+.+.+-
T Consensus 1 m~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee 62 (81)
T 1ic2_A 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSE 62 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555443 3334444332110 0112234455555555555554443
No 51
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.19 E-value=85 Score=26.99 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q psy17743 402 KSMGNLKEKISNKRKQVKDAE 422 (618)
Q Consensus 402 ~~m~k~~~ki~~~~~~~~~~~ 422 (618)
.+|+.++.||..++.+...+.
T Consensus 2 ~~md~iKkKm~~lk~e~e~a~ 22 (101)
T 3u59_A 2 ASMEAIKKKMQMLKLDKENAI 22 (101)
T ss_dssp CTHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 469999999999887765444
No 52
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=21.05 E-value=1.8e+02 Score=31.45 Aligned_cols=58 Identities=16% Similarity=0.195 Sum_probs=30.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHhcccchh
Q psy17743 401 DKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETD 461 (618)
Q Consensus 401 ~~~m~k~~~ki~~~~~~~~~~~~~l~~~~~~~k~~~~~e~~~~~~~~~~~~i~k~~~~~~~ 461 (618)
++....++.+++.++.+...+.+++.++++.+. ..+.+..++..++++|+.++.++..
T Consensus 37 ~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~ 94 (455)
T 2dq0_A 37 DTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE---PVDELLAKSREIVKRIGELENEVEE 94 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666665544432 2344455555555555555544443
No 53
>4ew5_A CIGR protein; inner membrane protein, structural genomics, APC101781, PSI- midwest center for structural genomics, MCSG; 1.87A {Salmonella enterica subsp}
Probab=20.54 E-value=51 Score=29.24 Aligned_cols=54 Identities=28% Similarity=0.581 Sum_probs=30.7
Q ss_pred ccccCCCcccc--cCCCCCCCCCCCCCCCccchhhhccCCCCCCCCCCCCCcceeeeCCceeEEee
Q psy17743 113 NFRIEPPGLFR--GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLAS 176 (618)
Q Consensus 113 nfrvepPGlfR--gRG~hpk~G~~k~RI~pedv~iN~~k~a~IPpp~~GhaWkdV~hdntvtWla~ 176 (618)
.|+.-|||+-+ .||..=--|-.+.+| |++.. .. +|+| |||.|..| +++.-=|+.
T Consensus 31 g~~~lPPGiaK~w~RG~pLPp~~~~~~v-pd~~~----~~--Lp~p-pGy~Wvrv--g~D~VLVAi 86 (102)
T 4ew5_A 31 GYQSLPPGIAKNLARGKPLPPGIAKKTV-PASML----GQ--LPYY-PGYEWKIV--GDNLVLIAL 86 (102)
T ss_dssp CCCCCCTTTTTCCCTTSBCCTTCCCEEC-CHHHH----TT--SCCC-TTEEEEEE--TTEEEEEET
T ss_pred CCCCCCcchhhccccCCcCChhhccccC-CHHHH----hc--CCCC-CCeEEEEE--CCCEEEEEe
Confidence 45678999955 566432334334344 55532 23 3544 69999998 444444443
Done!