Your job contains 1 sequence.
>psy17743
MEAGGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSK
CDFRKMHAYFVQKSEERKAMSKEEKKKIKDENEAITKEYGVCTIDGHKEKIGNFRIEPPG
LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN
VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL
YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE
VPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQ
QLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKD
AERALKDAKKAGESKAMTDKKKTALGRLKEQLLKLEVQETDKEENKTIALGTSKLNYLDP
RISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWK
SKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKIYNKT
QRAKFRWAIDMATADFVF
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy17743
(618 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NPT1 - symbol:TOP1 "Uncharacterized protein" ... 1752 1.6e-180 1
UNIPROTKB|Q7YR26 - symbol:TOP1 "DNA topoisomerase 1" spec... 1741 2.4e-179 1
UNIPROTKB|P11387 - symbol:TOP1 "DNA topoisomerase 1" spec... 1740 3.0e-179 1
UNIPROTKB|F1SDV7 - symbol:TOP1 "Uncharacterized protein" ... 1740 3.0e-179 1
UNIPROTKB|I3LHM3 - symbol:TOP1 "Uncharacterized protein" ... 1740 3.0e-179 1
UNIPROTKB|F1MN93 - symbol:TOP1 "Uncharacterized protein" ... 1739 3.9e-179 1
UNIPROTKB|F1NXP4 - symbol:TOP1MT "Uncharacterized protein... 1668 5.0e-179 2
UNIPROTKB|F1PUE0 - symbol:TOP1 "Uncharacterized protein" ... 1734 1.3e-178 1
MGI|MGI:98788 - symbol:Top1 "topoisomerase (DNA) I" speci... 1729 4.5e-178 1
UNIPROTKB|Q07050 - symbol:TOP1 "DNA topoisomerase 1" spec... 1728 5.7e-178 1
RGD|621246 - symbol:Top1 "topoisomerase (DNA) I" species:... 1726 9.3e-178 1
ZFIN|ZDB-GENE-060616-217 - symbol:top1l "topoisomerase (D... 1705 1.6e-175 1
UNIPROTKB|Q90WS1 - symbol:top1beta "Topoisomerase I beta"... 1697 1.1e-174 1
FB|FBgn0004924 - symbol:Top1 "Topoisomerase 1" species:72... 1695 1.8e-174 1
UNIPROTKB|Q90WS0 - symbol:top1alpha "Topoisomerase I alph... 1695 1.8e-174 1
UNIPROTKB|F1M1S6 - symbol:F1M1S6 "Uncharacterized protein... 1674 3.0e-172 1
UNIPROTKB|F1SEV4 - symbol:F1SEV4 "Uncharacterized protein... 1584 1.1e-170 2
UNIPROTKB|I3LTP0 - symbol:LOC100628093 "Uncharacterized p... 1584 1.1e-170 2
ZFIN|ZDB-GENE-040624-2 - symbol:top1mt "mitochondrial top... 1636 3.2e-168 1
UNIPROTKB|Q969P6 - symbol:TOP1MT "DNA topoisomerase I, mi... 1602 1.3e-164 1
UNIPROTKB|A9Q1D5 - symbol:TOP1MT "DNA topoisomerase I, mi... 1592 1.5e-163 1
WB|WBGene00006595 - symbol:top-1 species:6239 "Caenorhabd... 1555 1.2e-159 1
UNIPROTKB|O17966 - symbol:top-1 "DNA topoisomerase 1" spe... 1555 1.2e-159 1
RGD|1303177 - symbol:Top1mt "topoisomerase (DNA) I, mitoc... 1496 2.2e-153 1
MGI|MGI:1920210 - symbol:Top1mt "DNA topoisomerase 1, mit... 1492 5.8e-153 1
ZFIN|ZDB-GENE-030131-5390 - symbol:top1 "topoisomerase (D... 1411 2.2e-144 1
TAIR|locus:2173862 - symbol:TOP1BETA "DNA topoisomerase 1... 1070 1.2e-114 3
UNIPROTKB|Q84ZL5 - symbol:OJ1066_B03.125 "Os08g0154600 pr... 1081 6.1e-114 2
UNIPROTKB|E5RIC7 - symbol:TOP1MT "DNA topoisomerase I, mi... 1105 5.9e-112 1
CGD|CAL0000708 - symbol:TOP1 species:5476 "Candida albica... 1006 3.4e-111 2
UNIPROTKB|Q59XR0 - symbol:TOP1 "Likely DNA topoisomerase ... 1006 3.4e-111 2
POMBASE|SPBC1703.14c - symbol:top1 "DNA topoisomerase I" ... 1051 2.4e-110 2
UNIPROTKB|A8IDM1 - symbol:TOP1 "DNA topoisomerase I" spec... 1016 1.2e-106 2
DICTYBASE|DDB_G0283205 - symbol:top1 "DNA topoisomerase I... 1021 1.9e-106 2
UNIPROTKB|Q75CB7 - symbol:AGOS_ACL008C "ACL008Cp" species... 1049 5.1e-106 1
UNIPROTKB|Q7S0F7 - symbol:NCU09118 "DNA topoisomerase I" ... 978 5.6e-105 3
SGD|S000005366 - symbol:TOP1 "Topoisomerase I" species:49... 1026 1.4e-103 1
ASPGD|ASPL0000055668 - symbol:top1 species:162425 "Emeric... 1005 2.3e-101 1
UNIPROTKB|Q5BGS7 - symbol:AN0253.2 "Topoisomerase I [Sour... 1005 2.3e-101 1
UNIPROTKB|E5RFS0 - symbol:TOP1MT "DNA topoisomerase I, mi... 774 7.1e-77 1
UNIPROTKB|Q24BB2 - symbol:TTHERM_01299650 "Eukaryotic DNA... 677 1.4e-76 2
UNIPROTKB|Q7RE42 - symbol:PY05226 "Eukaryotic DNA topoiso... 521 4.4e-74 2
UNIPROTKB|E5RJ95 - symbol:TOP1MT "DNA topoisomerase I, mi... 681 5.1e-67 1
UNIPROTKB|E5RGE7 - symbol:TOP1MT "DNA topoisomerase I, mi... 232 1.6e-18 1
UNIPROTKB|E5RGR2 - symbol:TOP1MT "DNA topoisomerase I, mi... 232 1.6e-18 1
UNIPROTKB|E5RGR4 - symbol:TOP1MT "DNA topoisomerase I, mi... 201 3.5e-15 1
UNIPROTKB|H0YAR3 - symbol:TOP1MT "DNA topoisomerase I, mi... 165 2.6e-11 1
UNIPROTKB|H0YC03 - symbol:TOP1MT "DNA topoisomerase I, mi... 152 6.6e-10 1
TAIR|locus:4515103458 - symbol:AT4G26701 species:3702 "Ar... 105 2.0e-08 2
UNIPROTKB|H0YBR3 - symbol:TOP1MT "DNA topoisomerase I, mi... 121 1.4e-06 1
UNIPROTKB|E5RJ33 - symbol:TOP1MT "DNA topoisomerase I, mi... 114 7.9e-06 1
>UNIPROTKB|F1NPT1 [details] [associations]
symbol:TOP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing)
activity" evidence=IEA] [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0040016
"embryonic cleavage" evidence=IEA] [GO:0042493 "response to drug"
evidence=IEA] [GO:0043204 "perikaryon" evidence=IEA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0005654
GO:GO:0005730 GO:GO:0042493 GO:GO:0006260 GO:GO:0043204
GO:GO:0003682 GO:GO:0000932 GO:GO:0000228 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
GeneTree:ENSGT00390000016347 OMA:ESVKFYY EMBL:AADN02019362
IPI:IPI00596648 Ensembl:ENSGALT00000005832 ArrayExpress:F1NPT1
Uniprot:F1NPT1
Length = 747
Score = 1752 (621.8 bits), Expect = 1.6e-180, P = 1.6e-180
Identities = 332/493 (67%), Positives = 383/493 (77%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E++ IT LSKCDF
Sbjct: 226 GKVMKLSTKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTSEEKSTITSLSKCDFT 285
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF ++ + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 286 HMSQYFKAQTEARKQMSKEEKQKIKEENERLLKEYGYCVMDNHKERIANFKIEPPGLFRG 345
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKDSKVPPPPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 346 RGNHPKMGMLKRRIMPEDIIINCSKDSKVPPPPPGHKWKEVRHDNKVTWLVSWTENIQGS 405
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 406 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 465
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 466 KLALRAGNEKEEGETADTVGCCSLRVEHIKLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 525
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 526 EKRVFKNLQLFMENKQPEDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 585
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL +PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 586 ELTNPDDNIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 645
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
LK AK + +SK + KK A+ R TD+EENK IAL TSKLNY
Sbjct: 646 ELKSAKADAKVRRDEKSKKAVESKKKAVQRIEEQLMKLEVQATDREENKQIALSTSKLNY 705
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 706 LDPRISVAWCKKW 718
Score = 475 (172.3 bits), Expect = 3.0e-50, Sum P(3) = 3.0e-50
Identities = 86/110 (78%), Positives = 99/110 (90%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 392 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 451
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+LH E D
Sbjct: 452 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLHPELD 501
Score = 54 (24.1 bits), Expect = 3.9e-48, Sum P(2) = 3.9e-48
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 392 HQRSVPKSHDKSM-GNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKK 442
H++ K +KS N + K S+++K KD E K K G S+ DK K
Sbjct: 19 HKKDKEKDREKSKHSNSEHKDSSEKKH-KDKE---KTKHKDGSSEKHKDKHK 66
Score = 53 (23.7 bits), Expect = 5.0e-48, Sum P(2) = 5.0e-48
Identities = 24/88 (27%), Positives = 37/88 (42%)
Query: 157 PPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSIN 216
P G KWK + H V A E + VK+ KL + + E A AK ++
Sbjct: 194 PEGIKWKFLEHKGPV--FAPPYEPLPENVKFYYDGKVMKLSTKAE----EVATFFAKMLD 247
Query: 217 K-------IRENYQADWKSKEMRIRQRA 237
R+N+ DW+ KEM +++
Sbjct: 248 HEYTTKEIFRKNFFKDWR-KEMTSEEKS 274
Score = 52 (23.4 bits), Expect = 3.0e-50, Sum P(3) = 3.0e-50
Identities = 18/73 (24%), Positives = 40/73 (54%)
Query: 161 KWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQK-YETARKLAKSINKIR 219
K KE R + ++ L+S ++ + + +P ++K E D Y + ++ +K + + R
Sbjct: 68 KDKEKRKEEKIK-LSSGDIKIKKEKENGFSSPP-RIKDEPDDDGFYASPKEDSKPLKRPR 125
Query: 220 ENYQADWKSKEMR 232
E+ AD+K K+++
Sbjct: 126 EDDDADYKPKKIK 138
Score = 50 (22.7 bits), Expect = 1.0e-47, Sum P(2) = 1.0e-47
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 398 KSHDKSMGNLKEKISNKRKQVKDA-ERALKDAKKAGESKAMTDKKK 442
K H K +EK + + KD+ E+ KD +K ++K K
Sbjct: 17 KEHKKDKEKDREKSKHSNSEHKDSSEKKHKDKEKTKHKDGSSEKHK 62
Score = 42 (19.8 bits), Expect = 7.2e-47, Sum P(2) = 7.2e-47
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 197 KGEKDWQKYETARKLAKSINKIRENYQADWKSK 229
K +K Q+ E K K+ NK +++ +AD + K
Sbjct: 144 KAKKRKQEEEEDSKAKKAKNKDKKSPEADKRKK 176
Score = 38 (18.4 bits), Expect = 3.0e-50, Sum P(3) = 3.0e-50
Identities = 10/43 (23%), Positives = 22/43 (51%)
Query: 393 QRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESK 435
+++ + ++ + +K NK K+ +A++ K KK E K
Sbjct: 143 KKAKKRKQEEEEDSKAKKAKNKDKKSPEADKR-KKPKKEEEQK 184
>UNIPROTKB|Q7YR26 [details] [associations]
symbol:TOP1 "DNA topoisomerase 1" species:9534 "Chlorocebus
aethiops" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003917 "DNA topoisomerase
type I activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0000228 "nuclear chromosome" evidence=ISS] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 GO:GO:0005524 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0003682 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 HOVERGEN:HBG007988 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 EMBL:AB089321 ProteinModelPortal:Q7YR26 SMR:Q7YR26
PRIDE:Q7YR26 BindingDB:Q7YR26 ChEMBL:CHEMBL5265 Uniprot:Q7YR26
Length = 767
Score = 1741 (617.9 bits), Expect = 2.4e-179, P = 2.4e-179
Identities = 329/493 (66%), Positives = 383/493 (77%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 305
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++ + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 606 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ R TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 474 (171.9 bits), Expect = 5.7e-48, Sum P(2) = 5.7e-48
Identities = 86/110 (78%), Positives = 98/110 (89%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 55 (24.4 bits), Expect = 5.7e-48, Sum P(2) = 5.7e-48
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKK 442
K H K +EK + + KD+E+ K+ +K ++K K
Sbjct: 36 KEHKKDKEKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGSSEKHK 80
Score = 54 (24.1 bits), Expect = 7.2e-48, Sum P(2) = 7.2e-48
Identities = 36/155 (23%), Positives = 62/155 (40%)
Query: 157 PPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSIN 216
P G KWK + H V A E + VK+ KL + + E A AK ++
Sbjct: 214 PEGIKWKFLEHKGPV--FAPPYEPLPDSVKFYYDGKVMKLSPKAE----EVATFFAKMLD 267
Query: 217 K-------IRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRV 269
R+N+ DW+ KEM ++ + + + K ++ + Q + S +
Sbjct: 268 HEYTTKEIFRKNFFKDWR-KEMTNEEKNI-ITNLSKCDFTQMSQYFKAQTEARKQMS-KE 324
Query: 270 EHIQLHEEKDG--KPYVVCFDFLGKDSIRYYNEVP 302
E +++ EE + K Y C K+ I + P
Sbjct: 325 EKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEP 359
Score = 47 (21.6 bits), Expect = 3.9e-47, Sum P(2) = 3.9e-47
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 146 NCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTE 179
N KD KVP P +K K+ + + + W W E
Sbjct: 180 NKDKDKKVPEPD--NKKKKPKKEEEQKW--KWWE 209
Score = 40 (19.1 bits), Expect = 2.1e-46, Sum P(2) = 2.1e-46
Identities = 23/101 (22%), Positives = 46/101 (45%)
Query: 163 KEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKL-AKSINKIREN 221
KE R + +V AS ++ + + +P ++K E + Y K K + + R+
Sbjct: 88 KEKRKEEKVR--ASGDAKIKKEKENGFSSPP-QIKDEPEDDGYFVPPKEDIKPLKRPRDE 144
Query: 222 YQADWKSKEMRI----RQRAVALYFIDKLALRAGNEKDEDQ 258
AD+K K+++ +++ L + LR KD+D+
Sbjct: 145 DDADYKPKKIKTEDIKKEKKRKLEEEEDGKLRKPKNKDKDK 185
Score = 37 (18.1 bits), Expect = 4.4e-46, Sum P(2) = 4.4e-46
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 399 SHDKSMGNLKEKISNKRKQVKDAERALKDAK 429
S +K K++ KRK+ K RA DAK
Sbjct: 75 SSEKHKDKHKDRDKEKRKEEK--VRASGDAK 103
>UNIPROTKB|P11387 [details] [associations]
symbol:TOP1 "DNA topoisomerase 1" species:9606 "Homo
sapiens" [GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing)
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0040016
"embryonic cleavage" evidence=IEA] [GO:0043204 "perikaryon"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006265 "DNA topological change" evidence=IDA;IBA] [GO:0006338
"chromatin remodeling" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0031298 "replication fork protection
complex" evidence=IBA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0012501 "programmed cell death" evidence=NAS] [GO:0016310
"phosphorylation" evidence=NAS] [GO:0042493 "response to drug"
evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IDA;IMP] [GO:0000228
"nuclear chromosome" evidence=IDA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 GO:GO:0005524 EMBL:CH471077
GO:GO:0019048 GO:GO:0007059 GO:GO:0005654 GO:GO:0005730
GO:GO:0042493 GO:GO:0006260 GO:GO:0016310 GO:GO:0043204
Pathway_Interaction_DB:caspase_pathway GO:GO:0003682 GO:GO:0040016
DrugBank:DB01030 GO:GO:0006338 GO:GO:0000932 DrugBank:DB04967
GO:GO:0012501 GO:GO:0031298 DrugBank:DB00762 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 EMBL:AL022394 eggNOG:COG3569
HOVERGEN:HBG007988 KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
CTD:7150 ChiTaRS:TOP1 EMBL:J03250 EMBL:M60706 EMBL:M60688
EMBL:M60689 EMBL:M60690 EMBL:M60691 EMBL:M60692 EMBL:M60693
EMBL:M60694 EMBL:M60695 EMBL:M60696 EMBL:M60697 EMBL:M60698
EMBL:M60699 EMBL:M60700 EMBL:M60701 EMBL:M60702 EMBL:M60703
EMBL:M60704 EMBL:M60705 EMBL:AK292943 EMBL:AL035652 EMBL:X52601
EMBL:U07804 EMBL:U07806 EMBL:X16479 EMBL:M27913 IPI:IPI00413611
PIR:A30887 RefSeq:NP_003277.1 UniGene:Hs.472737 PDB:1A31 PDB:1A35
PDB:1A36 PDB:1EJ9 PDB:1K4S PDB:1K4T PDB:1LPQ PDB:1NH3 PDB:1R49
PDB:1RR8 PDB:1RRJ PDB:1SC7 PDB:1SEU PDB:1T8I PDB:1TL8 PDBsum:1A31
PDBsum:1A35 PDBsum:1A36 PDBsum:1EJ9 PDBsum:1K4S PDBsum:1K4T
PDBsum:1LPQ PDBsum:1NH3 PDBsum:1R49 PDBsum:1RR8 PDBsum:1RRJ
PDBsum:1SC7 PDBsum:1SEU PDBsum:1T8I PDBsum:1TL8 DisProt:DP00075
ProteinModelPortal:P11387 SMR:P11387 IntAct:P11387 MINT:MINT-94018
STRING:P11387 PhosphoSite:P11387 DMDM:12644118 SWISS-2DPAGE:P11387
PaxDb:P11387 PeptideAtlas:P11387 PRIDE:P11387
Ensembl:ENST00000361337 GeneID:7150 KEGG:hsa:7150 UCSC:uc002xjl.3
GeneCards:GC20P039657 H-InvDB:HIX0015818 H-InvDB:HIX0040702
HGNC:HGNC:11986 HPA:CAB009058 HPA:HPA019039 MIM:126420
neXtProt:NX_P11387 PharmGKB:PA353 InParanoid:P11387 OMA:ESVKFYY
OrthoDB:EOG4V170F PhylomeDB:P11387 BindingDB:P11387
ChEMBL:CHEMBL1781 EvolutionaryTrace:P11387 GenomeRNAi:7150
NextBio:27982 PMAP-CutDB:P11387 ArrayExpress:P11387 Bgee:P11387
CleanEx:HS_TOP1 Genevestigator:P11387 GermOnline:ENSG00000198900
Uniprot:P11387
Length = 765
Score = 1740 (617.6 bits), Expect = 3.0e-179, P = 3.0e-179
Identities = 329/493 (66%), Positives = 383/493 (77%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 244 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 303
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++ + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 304 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 363
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 364 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 423
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 424 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 483
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 484 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 543
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 544 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 603
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 604 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 663
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ R TD+EENK IALGTSKLNY
Sbjct: 664 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 723
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 724 LDPRITVAWCKKW 736
Score = 474 (171.9 bits), Expect = 8.9e-48, Sum P(2) = 8.9e-48
Identities = 86/110 (78%), Positives = 98/110 (89%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 410 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 469
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 470 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 519
Score = 53 (23.7 bits), Expect = 8.9e-48, Sum P(2) = 8.9e-48
Identities = 36/155 (23%), Positives = 62/155 (40%)
Query: 157 PPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSIN 216
P G KWK + H V A E + VK+ KL + + E A AK ++
Sbjct: 212 PEGIKWKFLEHKGPV--FAPPYEPLPENVKFYYDGKVMKLSPKAE----EVATFFAKMLD 265
Query: 217 K-------IRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRV 269
R+N+ DW+ KEM ++ + + + K ++ + Q + S +
Sbjct: 266 HEYTTKEIFRKNFFKDWR-KEMTNEEKNI-ITNLSKCDFTQMSQYFKAQTEARKQMS-KE 322
Query: 270 EHIQLHEEKDG--KPYVVCFDFLGKDSIRYYNEVP 302
E +++ EE + K Y C K+ I + P
Sbjct: 323 EKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEP 357
Score = 52 (23.4 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKK 442
K H K K K SN KD+E+ K+ +K ++K K
Sbjct: 36 KEHKKEKDREKSKHSNSEH--KDSEKKHKEKEKTKHKDGSSEKHK 78
Score = 47 (21.6 bits), Expect = 3.8e-47, Sum P(2) = 3.8e-47
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 146 NCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTE 179
N KD KVP P +K K+ + + + W W E
Sbjct: 178 NKDKDKKVPEPD--NKKKKPKKEEEQKW--KWWE 207
Score = 38 (18.4 bits), Expect = 3.4e-46, Sum P(2) = 3.4e-46
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 163 KEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKL-AKSINKIREN 221
KE R + +V AS ++ + + +P ++K E + Y K K + + R+
Sbjct: 86 KEKRKEEKVR--ASGDAKIKKEKENGFSSPP-QIKDEPEDDGYFVPPKEDIKPLKRPRDE 142
Query: 222 YQADWKSKEMR 232
AD+K K+++
Sbjct: 143 DDADYKPKKIK 153
Score = 37 (18.1 bits), Expect = 4.3e-46, Sum P(2) = 4.3e-46
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 399 SHDKSMGNLKEKISNKRKQVKDAERALKDAK 429
S +K K++ KRK+ K RA DAK
Sbjct: 73 SSEKHKDKHKDRDKEKRKEEK--VRASGDAK 101
>UNIPROTKB|F1SDV7 [details] [associations]
symbol:TOP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0005694
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 GeneTree:ENSGT00390000016347 EMBL:CU062531
Ensembl:ENSSSCT00000008047 Uniprot:F1SDV7
Length = 769
Score = 1740 (617.6 bits), Expect = 3.0e-179, P = 3.0e-179
Identities = 329/493 (66%), Positives = 383/493 (77%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 248 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 307
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +S + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 308 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHRERIANFKIEPPGLFRG 367
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 368 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 427
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 428 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 487
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 488 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 547
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 548 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 607
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 608 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 667
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ R TD+EENK IALGTSKLNY
Sbjct: 668 DLKSAKADAKVLKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 727
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 728 LDPRITVAWCKKW 740
Score = 474 (171.9 bits), Expect = 5.9e-48, Sum P(2) = 5.9e-48
Identities = 86/110 (78%), Positives = 98/110 (89%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 414 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 473
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 474 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 523
Score = 55 (24.4 bits), Expect = 5.9e-48, Sum P(2) = 5.9e-48
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKK 442
K H K +EK + + KD+E+ K+ +K ++K K
Sbjct: 36 KEHKKDKEKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGSSEKHK 80
Score = 53 (23.7 bits), Expect = 9.5e-48, Sum P(2) = 9.5e-48
Identities = 33/139 (23%), Positives = 58/139 (41%)
Query: 157 PPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSIN 216
P G KWK + H V A E + VK+ KL + + E A AK ++
Sbjct: 216 PEGIKWKFLEHKGPV--FAPPYEPLPESVKFYYDGKVMKLSPKAE----EVATFFAKMLD 269
Query: 217 K-------IRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRV 269
R+N+ DW+ KEM ++ + + + K ++ + Q++ S +
Sbjct: 270 HEYTTKEIFRKNFFKDWR-KEMTNEEKNI-ITNLSKCDFTQMSQYFKAQSEARKQMS-KE 326
Query: 270 EHIQLHEEKDG--KPYVVC 286
E +++ EE + K Y C
Sbjct: 327 EKLKIKEENEKLLKEYGFC 345
Score = 46 (21.3 bits), Expect = 5.2e-47, Sum P(2) = 5.2e-47
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 127 EHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTE 179
E + GKLK+ + KD KVP P K K+ + + + W W E
Sbjct: 168 EEEEDGKLKKTKNKDK-----DKDKKVPEPDS--KKKKPKKEEEQKW--KWWE 211
Score = 38 (18.4 bits), Expect = 3.6e-46, Sum P(2) = 3.6e-46
Identities = 16/71 (22%), Positives = 34/71 (47%)
Query: 163 KEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKL-AKSINKIREN 221
KE R + ++ AS ++ + + +P ++K E + Y K K + + R+
Sbjct: 88 KEKRKEEKIR--ASGDAKIKKEKENGFSSPP-RIKDEPEDDGYFAPPKEDIKPLKRPRDE 144
Query: 222 YQADWKSKEMR 232
AD+K K+++
Sbjct: 145 DDADYKPKKIK 155
>UNIPROTKB|I3LHM3 [details] [associations]
symbol:TOP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043204 "perikaryon" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 GO:GO:0005654 GO:GO:0005730
GO:GO:0042493 GO:GO:0006260 GO:GO:0043204 GO:GO:0003682
GO:GO:0040016 GO:GO:0000932 GO:GO:0000228 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
GeneTree:ENSGT00390000016347 OMA:ESVKFYY EMBL:CU062531
Ensembl:ENSSSCT00000029351 Uniprot:I3LHM3
Length = 820
Score = 1740 (617.6 bits), Expect = 3.0e-179, P = 3.0e-179
Identities = 329/493 (66%), Positives = 383/493 (77%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 314 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 373
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +S + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 374 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHRERIANFKIEPPGLFRG 433
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 434 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 493
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 494 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 553
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 554 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 613
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 614 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 673
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 674 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARR 733
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ R TD+EENK IALGTSKLNY
Sbjct: 734 DLKSAKADAKVLKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 793
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 794 LDPRITVAWCKKW 806
Score = 474 (171.9 bits), Expect = 1.9e-47, Sum P(2) = 1.9e-47
Identities = 86/110 (78%), Positives = 98/110 (89%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 480 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 539
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 540 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 589
Score = 53 (23.7 bits), Expect = 1.9e-47, Sum P(2) = 1.9e-47
Identities = 33/139 (23%), Positives = 58/139 (41%)
Query: 157 PPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSIN 216
P G KWK + H V A E + VK+ KL + + E A AK ++
Sbjct: 282 PEGIKWKFLEHKGPV--FAPPYEPLPESVKFYYDGKVMKLSPKAE----EVATFFAKMLD 335
Query: 217 K-------IRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRV 269
R+N+ DW+ KEM ++ + + + K ++ + Q++ S +
Sbjct: 336 HEYTTKEIFRKNFFKDWR-KEMTNEEKNI-ITNLSKCDFTQMSQYFKAQSEARKQMS-KE 392
Query: 270 EHIQLHEEKDG--KPYVVC 286
E +++ EE + K Y C
Sbjct: 393 EKLKIKEENEKLLKEYGFC 411
Score = 46 (21.3 bits), Expect = 1.0e-46, Sum P(2) = 1.0e-46
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 127 EHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTE 179
E + GKLK+ + KD KVP P K K+ + + + W W E
Sbjct: 234 EEEEDGKLKKTKNKDK-----DKDKKVPEPDS--KKKKPKKEEEQKW--KWWE 277
Score = 38 (18.4 bits), Expect = 7.1e-46, Sum P(2) = 7.1e-46
Identities = 16/71 (22%), Positives = 34/71 (47%)
Query: 163 KEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKL-AKSINKIREN 221
KE R + ++ AS ++ + + +P ++K E + Y K K + + R+
Sbjct: 154 KEKRKEEKIR--ASGDAKIKKEKENGFSSPP-RIKDEPEDDGYFAPPKEDIKPLKRPRDE 210
Query: 222 YQADWKSKEMR 232
AD+K K+++
Sbjct: 211 DDADYKPKKIK 221
>UNIPROTKB|F1MN93 [details] [associations]
symbol:TOP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043204 "perikaryon" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0000228 "nuclear chromosome"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 GO:GO:0005654 GO:GO:0005730
GO:GO:0042493 GO:GO:0006260 GO:GO:0043204 GO:GO:0003682
GO:GO:0040016 GO:GO:0000932 GO:GO:0000228 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 GeneTree:ENSGT00390000016347 CTD:7150 OMA:ESVKFYY
EMBL:DAAA02036643 EMBL:DAAA02036644 IPI:IPI00701632
RefSeq:NP_001193416.1 UniGene:Bt.39255 PRIDE:F1MN93
Ensembl:ENSBTAT00000010466 GeneID:534799 KEGG:bta:534799
NextBio:20876536 ArrayExpress:F1MN93 Uniprot:F1MN93
Length = 769
Score = 1739 (617.2 bits), Expect = 3.9e-179, P = 3.9e-179
Identities = 328/493 (66%), Positives = 383/493 (77%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 248 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 307
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF ++ + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 308 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 367
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 368 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 427
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 428 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 487
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 488 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 547
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 548 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 607
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 608 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 667
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ R TD+EENK IALGTSKLNY
Sbjct: 668 DLKSAKADAKVLKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 727
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 728 LDPRITVAWCKKW 740
Score = 474 (171.9 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 86/110 (78%), Positives = 98/110 (89%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 414 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 473
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 474 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 523
Score = 55 (24.4 bits), Expect = 5.9e-48, Sum P(2) = 5.9e-48
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKK 442
K H K +EK + + KD+E+ K+ +K ++K K
Sbjct: 36 KEHKKDKEKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGSSEKHK 80
Score = 52 (23.4 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 24/89 (26%), Positives = 37/89 (41%)
Query: 157 PPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSIN 216
P G KWK + H V A E + VK+ KL + + E A AK ++
Sbjct: 216 PEGIKWKFLEHKGPV--FAPPYEPLPENVKFYYDGKVMKLSPKAE----EVATFFAKMLD 269
Query: 217 K-------IRENYQADWKSKEMRIRQRAV 238
R+N+ DW+ KEM ++ +
Sbjct: 270 HEYTTKEIFRKNFFKDWR-KEMTNEEKNI 297
Score = 45 (20.9 bits), Expect = 6.6e-47, Sum P(2) = 6.6e-47
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 127 EHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTE 179
E + GKLK+ + KD KVP P K K+ + + + W W E
Sbjct: 168 EEEEDGKLKKPKNKDK-----DKDKKVPEPDS--KKKKPKKEEEQKW--KWWE 211
Score = 40 (19.1 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 397 PKSHDKSMGN-LKEKISNKRKQVKDAERALK 426
PK+ DK + E S K+K K+ E+ K
Sbjct: 178 PKNKDKDKDKKVPEPDSKKKKPKKEEEQKWK 208
Score = 38 (18.4 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 16/71 (22%), Positives = 34/71 (47%)
Query: 163 KEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKL-AKSINKIREN 221
KE R + ++ AS ++ + + +P ++K E + Y K K + + R+
Sbjct: 88 KEKRKEEKIK--ASGDAKIKKEKENGFSSPP-RIKDEPEDDGYFAPPKEDIKPLKRPRDE 144
Query: 222 YQADWKSKEMR 232
AD+K K+++
Sbjct: 145 DDADYKPKKIK 155
>UNIPROTKB|F1NXP4 [details] [associations]
symbol:TOP1MT "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=IEA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0005694
GO:GO:0042645 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
OMA:PEADGCQ GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
GeneTree:ENSGT00390000016347 EMBL:AADN02037381 EMBL:AADN02037382
IPI:IPI00584288 Ensembl:ENSGALT00000026012 Uniprot:F1NXP4
Length = 593
Score = 1668 (592.2 bits), Expect = 5.0e-179, Sum P(2) = 5.0e-179
Identities = 318/489 (65%), Positives = 375/489 (76%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS EEIATFYA+M++HEYTTKE F NF DWRK MT +E+ +I L KCDFR
Sbjct: 72 GKPLKLSLATEEIATFYAKMLDHEYTTKEIFQNNFFNDWRKEMTPQEQEIIKQLDKCDFR 131
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ I +EYG C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 132 EIHKYFVDKNEARKALSKEEKQKLKEEADKIQEEYGYCILDGHREKIGNFKTEPPGLFRG 191
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LK+R+ ED+IINCSKDSK+P PP GHKWKEVR DN VTWLASWTEN+Q
Sbjct: 192 RGDHPKMGMLKKRIMPEDVIINCSKDSKIPEPPVGHKWKEVRFDNTVTWLASWTENIQNS 251
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSSKLKGEKDWQK+E ARKL ++KIR YQADWKSKEM+ RQRAVALYFID
Sbjct: 252 LKYIMLNPSSKLKGEKDWQKFEVARKLKDVVHKIRAQYQADWKSKEMKKRQRAVALYFID 311
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+LH + DG+ +VV FDFLGKDSIRYYN+V V
Sbjct: 312 KLALRAGNEKEEGETADTVGCCSLRVEHIKLHSKLDGQEHVVEFDFLGKDSIRYYNKVSV 371
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK VFKNLQLF++NK DDLFDRL+T+VLNKHL +LM GLTAKVFRTYNASITLQ+QL
Sbjct: 372 EKPVFKNLQLFMKNKDPGDDLFDRLSTAVLNKHLQKLMNGLTAKVFRTYNASITLQEQLK 431
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L +P+ S A K+L+YNRANRAVA+LCNHQRS PK+ +KSM NL+ KI K++Q++ A++
Sbjct: 432 ALTNPEDSVAGKLLSYNRANRAVAILCNHQRSTPKTFEKSMQNLQTKIDAKKEQLEKAQQ 491
Query: 424 ALKDA------KKAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
L++A KK ++ KKK L R TDKEENK IALGTSKLNY
Sbjct: 492 ELEEAEDEFKDKKDAKAAGNVQKKKKLLERLKEQLAKLNVQATDKEENKQIALGTSKLNY 551
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 552 LDPRISIAW 560
Score = 463 (168.0 bits), Expect = 1.9e-55, Sum P(3) = 1.9e-55
Identities = 87/111 (78%), Positives = 98/111 (88%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASWTEN+Q +KYIMLNPSSKLKGEKDWQK+E ARKL ++KIR YQADWKSK
Sbjct: 237 TVTWLASWTENIQNSLKYIMLNPSSKLKGEKDWQKFEVARKLKDVVHKIRAQYQADWKSK 296
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+LH + D
Sbjct: 297 EMKKRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLHSKLD 347
Score = 92 (37.4 bits), Expect = 5.0e-179, Sum P(2) = 5.0e-179
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 594 KKIYNKTQRAKFRWAIDMATADFVF 618
+KI+NKTQR KF WAIDM DF F
Sbjct: 569 EKIFNKTQREKFAWAIDMTDEDFEF 593
Score = 46 (21.3 bits), Expect = 1.9e-55, Sum P(3) = 1.9e-55
Identities = 29/115 (25%), Positives = 45/115 (39%)
Query: 159 GHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLK--GEKDWQKYETARKLAKSIN 216
G KWK++ H + E + V++ KL E+ Y +
Sbjct: 42 GVKWKQLEHKGP--YFVPLYEPLPDDVQFYYDGKPLKLSLATEEIATFYAKMLDHEYTTK 99
Query: 217 KI-RENYQADWKSKEMR------IRQ------RAVALYFIDKLALRAGNEKDEDQ 258
+I + N+ DW+ KEM I+Q R + YF+DK R K+E Q
Sbjct: 100 EIFQNNFFNDWR-KEMTPQEQEIIKQLDKCDFREIHKYFVDKNEARKALSKEEKQ 153
>UNIPROTKB|F1PUE0 [details] [associations]
symbol:TOP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 GO:GO:0005694 GO:GO:0006265 SUPFAM:SSF56349
GO:GO:0003918 KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
GeneTree:ENSGT00390000016347 CTD:7150 OMA:ESVKFYY EMBL:AAEX03013937
EMBL:AAEX03013938 EMBL:AAEX03013939 RefSeq:XP_534420.3
Ensembl:ENSCAFT00000014397 GeneID:477229 KEGG:cfa:477229
Uniprot:F1PUE0
Length = 770
Score = 1734 (615.5 bits), Expect = 1.3e-178, P = 1.3e-178
Identities = 328/493 (66%), Positives = 382/493 (77%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT +E+ +IT+LSKCDF
Sbjct: 249 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFT 308
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +S + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 309 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 368
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PP GHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 369 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPTGHKWKEVRHDNKVTWLVSWTENIQGS 428
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 429 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 488
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 489 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPV 548
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 549 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 608
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ DA R
Sbjct: 609 ELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARR 668
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ R TD+EENK IALGTSKLNY
Sbjct: 669 DLKSAKADAKVLKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 728
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 729 LDPRITVAWCKKW 741
Score = 474 (171.9 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 86/110 (78%), Positives = 98/110 (89%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 415 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 474
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 475 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 524
Score = 55 (24.4 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKK 442
K H K +EK + + KD+E+ K+ +K ++K K
Sbjct: 36 KEHKKDKEKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGSSEKHK 80
Score = 53 (23.7 bits), Expect = 9.7e-48, Sum P(2) = 9.7e-48
Identities = 33/139 (23%), Positives = 58/139 (41%)
Query: 157 PPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSIN 216
P G KWK + H V A E + VK+ KL + + E A AK ++
Sbjct: 217 PEGIKWKFLEHKGPV--FAPPYEPLPESVKFYYDGKVMKLSPKAE----EVATFFAKMLD 270
Query: 217 K-------IRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRV 269
R+N+ DW+ KEM ++ + + + K ++ + Q++ S +
Sbjct: 271 HEYTTKEIFRKNFFKDWR-KEMTNEEKNI-ITNLSKCDFTQMSQYFKAQSEARKQMS-KE 327
Query: 270 EHIQLHEEKDG--KPYVVC 286
E +++ EE + K Y C
Sbjct: 328 EKLKIKEENEKLLKEYGFC 346
Score = 48 (22.0 bits), Expect = 3.2e-47, Sum P(2) = 3.2e-47
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 127 EHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTE 179
E + GKLK+ E KD KVP P K K+ + + + W W E
Sbjct: 169 EEEEDGKLKKPKNKEK-----EKDKKVPEPDS--KKKKPKKEEEQKW--KWWE 212
Score = 37 (18.1 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 399 SHDKSMGNLKEKISNKRKQVKDAERALKDAK 429
S +K K++ KRK+ K RA DAK
Sbjct: 75 SSEKHKDKHKDRDKEKRKEEK--VRASGDAK 103
>MGI|MGI:98788 [details] [associations]
symbol:Top1 "topoisomerase (DNA) I" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=ISO;IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;IBA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IMP] [GO:0006265 "DNA
topological change" evidence=ISO;IDA] [GO:0006338 "chromatin
remodeling" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=ISO] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0031298 "replication fork
protection complex" evidence=IBA] [GO:0031490 "chromatin DNA
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0040016 "embryonic cleavage" evidence=IMP]
[GO:0043204 "perikaryon" evidence=IDA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 MGI:MGI:98788 GO:GO:0005524
GO:GO:0005737 GO:GO:0007059 GO:GO:0005654 GO:GO:0005730
GO:GO:0042493 GO:GO:0006260 GO:GO:0043204 GO:GO:0003682
GO:GO:0040016 GO:GO:0006338 GO:GO:0000932 GO:GO:0031298
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569
HOGENOM:HOG000105469 HOVERGEN:HBG007988 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 GeneTree:ENSGT00390000016347 CTD:7150 ChiTaRS:TOP1
OMA:ESVKFYY OrthoDB:EOG4V170F EMBL:D10061 EMBL:L20632 EMBL:AL590414
EMBL:AL591673 IPI:IPI00109764 PIR:JU0144 RefSeq:NP_033434.2
UniGene:Mm.217233 ProteinModelPortal:Q04750 SMR:Q04750
MINT:MINT-1868161 STRING:Q04750 PhosphoSite:Q04750 PaxDb:Q04750
PRIDE:Q04750 Ensembl:ENSMUST00000109468 GeneID:21969 KEGG:mmu:21969
UCSC:uc008nqy.1 InParanoid:Q04750 BindingDB:Q04750
ChEMBL:CHEMBL2814 NextBio:301666 PMAP-CutDB:Q04750 Bgee:Q04750
CleanEx:MM_TOP1 Genevestigator:Q04750 GermOnline:ENSMUSG00000070544
Uniprot:Q04750
Length = 767
Score = 1729 (613.7 bits), Expect = 4.5e-178, P = 4.5e-178
Identities = 328/493 (66%), Positives = 379/493 (76%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT E+ IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNTITNLSKCDFT 305
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +S + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDF GKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 606 ELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ R TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 474 (171.9 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 86/110 (78%), Positives = 98/110 (89%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 56 (24.8 bits), Expect = 4.5e-48, Sum P(2) = 4.5e-48
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKK 442
K H K +EK + + KD+E+ K+ +K ++K K
Sbjct: 36 KEHKKDKDKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGSSEKHK 80
Score = 51 (23.0 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
Identities = 24/82 (29%), Positives = 34/82 (41%)
Query: 157 PPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSIN 216
P G KWK + H V A E + VK+ KL + + E A AK ++
Sbjct: 214 PEGIKWKFLEHKGPV--FAPPYEPLPESVKFYYDGKVMKLSPKAE----EVATFFAKMLD 267
Query: 217 K-------IRENYQADWKSKEM 231
R+N+ DW+ KEM
Sbjct: 268 HEYTTKEIFRKNFFKDWR-KEM 288
Score = 45 (20.9 bits), Expect = 6.4e-47, Sum P(2) = 6.4e-47
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 392 HQRSVPKSHDKSMGNLKEKISNKRKQV-KDAERALKDAKK---AGESKAMTDKK 441
H+ S K +K K+ S K K KD ++ + +K AG++K +K+
Sbjct: 56 HKDSEKKHKEKEKTKHKDGSSEKHKDKHKDRDKERRKEEKIRAAGDAKIKKEKE 109
Score = 40 (19.1 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 195 KLKGEKDWQKYETARKL-AKSINKIRENYQADWKSKEMR 232
++K E + Y K K + ++R+ AD+K K+++
Sbjct: 117 RIKDEPEDDGYFAPPKEDIKPLKRLRDEDDADYKPKKIK 155
Score = 38 (18.4 bits), Expect = 1.2e-48, Sum P(3) = 1.2e-48
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 410 KISNKRKQVKDAERALKDAKKAGESK--AMTDKKK 442
K KRK ++ + LK K + K A D KK
Sbjct: 160 KKEKKRKSEEEEDGKLKKPKNKDKDKKVAEPDNKK 194
>UNIPROTKB|Q07050 [details] [associations]
symbol:TOP1 "DNA topoisomerase 1" species:10029 "Cricetulus
griseus" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003917 "DNA topoisomerase
type I activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006265 "DNA topological change" evidence=ISS]
[GO:0000228 "nuclear chromosome" evidence=ISS] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 GO:GO:0005524 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0003682 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 HOVERGEN:HBG007988 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 EMBL:Z21624 EMBL:Z21625 PIR:A49546
RefSeq:NP_001230963.1 ProteinModelPortal:Q07050 SMR:Q07050
PRIDE:Q07050 GeneID:100689046 CTD:7150 Uniprot:Q07050
Length = 767
Score = 1728 (613.3 bits), Expect = 5.7e-178, P = 5.7e-178
Identities = 328/493 (66%), Positives = 379/493 (76%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT E+ VIT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNVITNLSKCDFT 305
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +S + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKDQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTV CCSLRVEHI LH E DG+ YVV FDF GKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVSCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA R
Sbjct: 606 ELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARR 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ R TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 468 (169.8 bits), Expect = 8.8e-49, Sum P(3) = 8.8e-49
Identities = 85/110 (77%), Positives = 97/110 (88%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTV CCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVSCCSLRVEHINLHPELD 521
Score = 58 (25.5 bits), Expect = 1.3e-47, Sum P(2) = 1.3e-47
Identities = 35/139 (25%), Positives = 59/139 (42%)
Query: 157 PPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSIN 216
P G KWK + H V A E + VK+ KL + + E A AK ++
Sbjct: 214 PEGIKWKFLEHKGPV--FAPPYEPLPEGVKFYYDGKVMKLSPKAE----EVATFFAKMLD 267
Query: 217 K-------IRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRV 269
R+N+ DW+ KEM ++ V + + K ++ +DQ++ S +
Sbjct: 268 HEYTTKEIFRKNFFKDWR-KEMTNDEKNV-ITNLSKCDFTQMSQYFKDQSEARKQMS-KE 324
Query: 270 EHIQLHEEKDG--KPYVVC 286
E +++ EE + K Y C
Sbjct: 325 EKLKIKEENEKLLKEYGFC 343
Score = 55 (24.4 bits), Expect = 2.8e-47, Sum P(2) = 2.8e-47
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKK 442
K H K +EK + + KD+E+ K+ +K ++K K
Sbjct: 36 KEHKKDKEKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGSSEKHK 80
Score = 44 (20.5 bits), Expect = 8.8e-49, Sum P(3) = 8.8e-49
Identities = 16/40 (40%), Positives = 18/40 (45%)
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAE--RALKDAKKAGESK 435
K ++ G LK K NK K K AE K KK E K
Sbjct: 166 KLEEEEDGKLK-KTKNKDKDKKGAESDNKKKKPKKEEEQK 204
Score = 42 (19.8 bits), Expect = 8.8e-49, Sum P(3) = 8.8e-49
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 163 KEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKL-AKSINKIREN 221
KE R + ++ AS ++ + + +P ++K E D Y K K + + R+
Sbjct: 88 KEKRKEEKIR--ASGDAKIKKEKENGFSSPP-RIKDEPDDDGYFAPPKEDIKPLKRPRDE 144
Query: 222 YQADWKSKEMR 232
AD+K K+++
Sbjct: 145 DDADYKPKKIK 155
>RGD|621246 [details] [associations]
symbol:Top1 "topoisomerase (DNA) I" species:10116 "Rattus
norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0001651 "dense fibrillar component" evidence=IDA]
[GO:0003677 "DNA binding" evidence=ISO;IDA] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003917 "DNA topoisomerase type I
activity" evidence=ISO;IDA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005654
"nucleoplasm" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006260
"DNA replication" evidence=ISO;IBA] [GO:0006265 "DNA topological
change" evidence=ISO;IDA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0009266 "response to temperature stimulus" evidence=IEP]
[GO:0009303 "rRNA transcription" evidence=IMP] [GO:0031100 "organ
regeneration" evidence=IEP] [GO:0031298 "replication fork
protection complex" evidence=IBA] [GO:0031490 "chromatin DNA
binding" evidence=IDA] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IEP] [GO:0040016 "embryonic cleavage" evidence=ISO]
[GO:0042493 "response to drug" evidence=ISO] [GO:0043204
"perikaryon" evidence=ISO] [GO:0051591 "response to cAMP"
evidence=IEP] [GO:0071373 "cellular response to luteinizing hormone
stimulus" evidence=IEP] [GO:0000228 "nuclear chromosome"
evidence=ISO] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 RGD:621246 GO:GO:0005524 GO:GO:0007059 GO:GO:0005654
GO:GO:0005730 GO:GO:0032403 GO:GO:0033554 GO:GO:0071373
GO:GO:0006260 GO:GO:0031100 GO:GO:0006338 GO:GO:0051591
GO:GO:0009303 GO:GO:0031490 GO:GO:0009266 GO:GO:0031298
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569
HOGENOM:HOG000105469 HOVERGEN:HBG007988 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 CTD:7150 OrthoDB:EOG4V170F EMBL:AF140782
IPI:IPI00204133 RefSeq:NP_072137.1 UniGene:Rn.91572
ProteinModelPortal:Q9WUL0 SMR:Q9WUL0 IntAct:Q9WUL0 STRING:Q9WUL0
PhosphoSite:Q9WUL0 PRIDE:Q9WUL0 Ensembl:ENSRNOT00000034781
GeneID:64550 KEGG:rno:64550 UCSC:RGD:621246 BindingDB:Q9WUL0
ChEMBL:CHEMBL1075164 NextBio:613440 ArrayExpress:Q9WUL0
Genevestigator:Q9WUL0 GermOnline:ENSRNOG00000030310 Uniprot:Q9WUL0
Length = 767
Score = 1726 (612.6 bits), Expect = 9.3e-178, P = 9.3e-178
Identities = 327/493 (66%), Positives = 379/493 (76%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT E+ IT+LSKCDF
Sbjct: 246 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNTITNLSKCDFT 305
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +S + KEYG C +D H+E+I NF+IEPPGLFRG
Sbjct: 306 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHRERIANFKIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 366 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG+ YVV FDF GKDSIRYYN+VPV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNT +LNKHL +LMEGLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ DA +
Sbjct: 606 ELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARK 665
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
LK AK K ++K + + KK A+ R TD+EENK IALGTSKLNY
Sbjct: 666 DLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 726 LDPRITVAWCKKW 738
Score = 474 (171.9 bits), Expect = 1.7e-48, Sum P(2) = 1.7e-48
Identities = 86/110 (78%), Positives = 98/110 (89%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 412 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 472 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 521
Score = 111 (44.1 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 40/127 (31%), Positives = 64/127 (50%)
Query: 502 MLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID---- 557
M+N SK+ +KD + ARK KS K D K+K++ + + A+ ++
Sbjct: 646 MMNLQSKIDAKKD--QLADARKDLKSA-KADAKVMKDAKTKKV-VESKKKAVQRLEEQLM 701
Query: 558 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK------KIYNKTQRAKFRWAIDM 611
KL ++A +++E++ +G L ++ +K KIYNKTQR KF WAIDM
Sbjct: 702 KLEVQA-TDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDM 760
Query: 612 ATADFVF 618
D+ F
Sbjct: 761 TDEDYEF 767
Score = 60 (26.2 bits), Expect = 1.7e-48, Sum P(2) = 1.7e-48
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKK 442
K H K +EK + + KD+E+ K+ +K +DK K
Sbjct: 36 KEHKKDKDKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGSSDKHK 80
Score = 50 (22.7 bits), Expect = 1.9e-47, Sum P(2) = 1.9e-47
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 398 KSHDKSMGNLKE-KISNKRKQVKDAERALKDAKKAGESK 435
K ++ G LK+ K +K K+V + + K AKK E K
Sbjct: 166 KLEEEEDGKLKKPKNKDKDKKVAEPDNKKKKAKKEEEQK 204
Score = 49 (22.3 bits), Expect = 2.4e-47, Sum P(2) = 2.4e-47
Identities = 24/82 (29%), Positives = 34/82 (41%)
Query: 157 PPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSIN 216
P G KWK + H V A E + VK+ KL + + E A AK ++
Sbjct: 214 PEGIKWKFLEHKGPV--FAPPYEPLPEGVKFYYDGKVMKLSPKAE----EVATFFAKMLD 267
Query: 217 K-------IRENYQADWKSKEM 231
R+N+ DW+ KEM
Sbjct: 268 HEYTTKEIFRKNFFKDWR-KEM 288
Score = 46 (21.3 bits), Expect = 5.0e-47, Sum P(2) = 5.0e-47
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 392 HQRSVPKSHDKSMGNLKEKISNKRKQV-KDAERALKDAKK---AGESKAMTDKK 441
H+ S K +K K+ S+K K KD ++ + +K AG++K +K+
Sbjct: 56 HKDSEKKHKEKEKTKHKDGSSDKHKDKHKDRDKEKRKEEKIRAAGDAKIKKEKE 109
>ZFIN|ZDB-GENE-060616-217 [details] [associations]
symbol:top1l "topoisomerase (DNA) I, like"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;IBA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA topological
change" evidence=IEA;IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0031298 "replication
fork protection complex" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA]
[GO:0006338 "chromatin remodeling" evidence=IBA] [GO:0006260 "DNA
replication" evidence=IBA] [GO:0016853 "isomerase activity"
evidence=IEA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 ZFIN:ZDB-GENE-060616-217 GO:GO:0007059 GO:GO:0005730
GO:GO:0006260 GO:GO:0006338 GO:GO:0031298 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569 HOGENOM:HOG000105469
HOVERGEN:HBG007988 KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
GeneTree:ENSGT00390000016347 OMA:ESVKFYY OrthoDB:EOG4V170F
EMBL:CR548630 EMBL:BC117588 IPI:IPI00860024 RefSeq:NP_001037789.1
UniGene:Dr.67676 SMR:Q1ED17 STRING:Q1ED17
Ensembl:ENSDART00000065949 GeneID:553496 KEGG:dre:553496 CTD:553496
InParanoid:Q1ED17 NextBio:20880241 Uniprot:Q1ED17
Length = 758
Score = 1705 (605.2 bits), Expect = 1.6e-175, P = 1.6e-175
Identities = 325/489 (66%), Positives = 383/489 (78%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS +AEE+ATF+++M++HEYTTK+ F NF KDWRK MT +E++ ITDL+KCDF
Sbjct: 237 GKHMKLSPNAEEVATFFSKMLDHEYTTKDIFRKNFFKDWRKEMTSEEKSKITDLNKCDFS 296
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M YF +S I +EYG C +D HKE+I NFRIEPPGLFRG
Sbjct: 297 NMSEYFKAQSEARKAMTKEEKLKIKEENERILQEYGFCIMDNHKERIANFRIEPPGLFRG 356
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR++ EDIIINCSKDSK P PPPG KWKEVRHDN+VTWL SWTEN+QG
Sbjct: 357 RGDHPKMGMLKRRIRPEDIIINCSKDSKHPTPPPGTKWKEVRHDNKVTWLVSWTENIQGS 416
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKEM+IRQRAVALYFID
Sbjct: 417 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRSQYRDDWKSKEMKIRQRAVALYFID 476
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEH+ LH E DG+ +VV FDFLGKDSIRYYN+VPV
Sbjct: 477 KLALRAGNEKEEGETADTVGCCSLRVEHLTLHPEMDGQEFVVEFDFLGKDSIRYYNKVPV 536
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+E+K+ DDLFDRLNTS+LNKHL ELM+GLTAKVFRTYNASITLQQQLN
Sbjct: 537 EKRVFKNLQLFMEDKEPEDDLFDRLNTSILNKHLQELMDGLTAKVFRTYNASITLQQQLN 596
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL + + + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K++Q+ +A+R
Sbjct: 597 ELTNSEDNVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMQNLQTKIDAKKEQLVEAKR 656
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
LK AK K + K + KK AL R TD+EENK IALGTSKLNY
Sbjct: 657 ELKGAKADAKVRKDEKFKKAVEAKKKALQRVEEQLMKLEVQATDREENKQIALGTSKLNY 716
Query: 478 LDPRISVTW 486
LDPRISV W
Sbjct: 717 LDPRISVAW 725
Score = 469 (170.2 bits), Expect = 3.5e-51, Sum P(3) = 3.5e-51
Identities = 85/110 (77%), Positives = 98/110 (89%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKE
Sbjct: 403 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRSQYRDDWKSKE 462
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M+IRQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEH+ LH E D
Sbjct: 463 MKIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHLTLHPEMD 512
Score = 111 (44.1 bits), Expect = 0.00013, Sum P(3) = 0.00013
Identities = 40/127 (31%), Positives = 67/127 (52%)
Query: 502 MLNPSSKLKGEKDWQKYETARKL--AKSINKIR--ENYQADWKSKEMRIRQRAVALYFID 557
M N +K+ +K+ Q E R+L AK+ K+R E ++ ++K+ +++ L
Sbjct: 637 MQNLQTKIDAKKE-QLVEAKRELKGAKADAKVRKDEKFKKAVEAKKKALQRVEEQLM--- 692
Query: 558 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK------KIYNKTQRAKFRWAIDM 611
KL ++A +++E++ +G L ++ +K KIYNKTQR KF WAIDM
Sbjct: 693 KLEVQA-TDREENKQIALGTSKLNYLDPRISVAWCKKFGIPIEKIYNKTQREKFAWAIDM 751
Query: 612 ATADFVF 618
A D+ F
Sbjct: 752 AEKDYEF 758
Score = 57 (25.1 bits), Expect = 3.5e-51, Sum P(3) = 3.5e-51
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 193 SSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
S +K E D + + KL KS+ + R++ D+K K+++
Sbjct: 108 SPHIKSEPDSDDFYHSPKLEKSLKRERDDDDGDYKPKKIK 147
Score = 50 (22.7 bits), Expect = 3.5e-51, Sum P(3) = 3.5e-51
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 402 KSMGNLKEKISNKRKQVKDAERALKDAK-KAGESKAMTDKKKTA 444
K+ + EK + KRKQ ++ + K K K GE TD KK A
Sbjct: 147 KTEDDRSEKKAKKRKQEEEDIKPKKKTKDKKGE--VATDGKKKA 188
Score = 48 (22.0 bits), Expect = 1.0e-46, Sum P(2) = 1.0e-46
Identities = 32/144 (22%), Positives = 53/144 (36%)
Query: 108 KEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRH 167
K K + R E R + E K K + + ++ + K +K P W+E R+
Sbjct: 145 KIKTEDDRSEKKAKKRKQEEEDIKPKKKTKDKKGEVATDGKKKAKKEPEEKWKWWEEERY 204
Query: 168 DNQVTW---------LASWTENVQGQVKYIMLNPSSKLKGEKD-----WQKYETARKLAK 213
+ V W A E + VK+ KL + + K K
Sbjct: 205 TDGVKWKFLEHKGPVFAPPYEPLPSNVKFYYDGKHMKLSPNAEEVATFFSKMLDHEYTTK 264
Query: 214 SINKIRENYQADWKSKEMRIRQRA 237
I R+N+ DW+ KEM +++
Sbjct: 265 DI--FRKNFFKDWR-KEMTSEEKS 285
Score = 47 (21.6 bits), Expect = 3.9e-50, Sum P(3) = 3.9e-50
Identities = 19/70 (27%), Positives = 32/70 (45%)
Query: 195 KLK-GEKDWQK--YETARKLAKSIN-KIRENYQADWKSKEMRIRQRAVALYFIDKLALRA 250
KLK G D QK ++ RK +S + + ++ Q + S ++ + Y KL
Sbjct: 71 KLKDGSSDKQKDKHKEKRKEERSSDDRPKKEKQNGFASPHIKSEPDSDDFYHSPKLEKSL 130
Query: 251 GNEKDEDQAD 260
E+D+D D
Sbjct: 131 KRERDDDDGD 140
Score = 46 (21.3 bits), Expect = 1.6e-46, Sum P(2) = 1.6e-46
Identities = 16/53 (30%), Positives = 23/53 (43%)
Query: 391 NHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA-LKDAKKAGESKAMTDKKK 442
+H++ + K + S K+ + KD ER LKD G S DK K
Sbjct: 37 DHKKDKEREKSKYSNSEHRDSSEKKHRDKDKERQKLKD----GSSDKQKDKHK 85
Score = 42 (19.8 bits), Expect = 4.3e-46, Sum P(2) = 4.3e-46
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG 432
K D S K+K KRK+ + ++ K K+ G
Sbjct: 71 KLKDGSSDKQKDKHKEKRKEERSSDDRPKKEKQNG 105
Score = 42 (19.8 bits), Expect = 4.3e-46, Sum P(2) = 4.3e-46
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 392 HQRSVPKSH---DKSMGNLKE----KISNKRKQVKDAERALKDAKK 430
H+ S K H DK LK+ K +K K+ + ER+ D K
Sbjct: 54 HRDSSEKKHRDKDKERQKLKDGSSDKQKDKHKEKRKEERSSDDRPK 99
Score = 38 (18.4 bits), Expect = 6.3e-50, Sum P(3) = 6.3e-50
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESK 435
K + ++K K K K+ + A K AKK E K
Sbjct: 158 KKRKQEEEDIKPKKKTKDKKGEVATDGKKKAKKEPEEK 195
>UNIPROTKB|Q90WS1 [details] [associations]
symbol:top1beta "Topoisomerase I beta" species:31033
"Takifugu rubripes" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0031298 "replication fork protection complex" evidence=IBA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0007059
GO:GO:0005730 GO:GO:0006260 GO:GO:0006338 GO:GO:0031298
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569
HOGENOM:HOG000105469 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
HSSP:P11387 OrthoDB:EOG4V170F EMBL:AL035358 RefSeq:XP_003973717.1
ProteinModelPortal:Q90WS1 SMR:Q90WS1 GeneID:101069232
InParanoid:Q90WS1 Uniprot:Q90WS1
Length = 753
Score = 1697 (602.4 bits), Expect = 1.1e-174, P = 1.1e-174
Identities = 323/493 (65%), Positives = 378/493 (76%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK L AEE+ATF+A+M++HEYTTK+ F NF KDWRK MT +E+A ITDL KCDF
Sbjct: 232 GKAFMLRAGAEEVATFFAKMLDHEYTTKDVFRKNFFKDWRKEMTSEEKAKITDLKKCDFS 291
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF +S + ++YG C +D HKE+I NFRIEPPGLFRG
Sbjct: 292 EMHQYFKAQSEARKAMTKEEKLKIKEENERLLQQYGFCIMDNHKERIANFRIEPPGLFRG 351
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR++ +DIIINCSKDSK P PPPG KWKEVRHDN+VTWL SWTEN+QG
Sbjct: 352 RGDHPKMGMLKRRIRPQDIIINCSKDSKYPEPPPGTKWKEVRHDNKVTWLVSWTENIQGS 411
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 412 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRNQYREDWKSKEMRIRQRAVALYFID 471
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E DG+ YVV FDFLGKDSIRYYN+VPV
Sbjct: 472 KLALRAGNEKEEGETADTVGCCSLRVEHIKLYPEIDGQEYVVEFDFLGKDSIRYYNKVPV 531
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL ELM+GLTAKVFRTYNASITLQ QL
Sbjct: 532 EKRVFKNLQLFMENKEPDDDLFDRLNTSILNKHLQELMDGLTAKVFRTYNASITLQAQLK 591
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL + + KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+ Q+ A+R
Sbjct: 592 ELTSAEENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMQNLQTKIDAKKAQLSAAKR 651
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
LK AK + +SK + KK A+ R TD+EENK IALGTSKLNY
Sbjct: 652 ELKSAKADAKVRRDEKSKKAVEAKKKAVQRIDDQLMKLEVQATDREENKQIALGTSKLNY 711
Query: 478 LDPRISVTWLASW 490
LDPRISV W W
Sbjct: 712 LDPRISVAWCKKW 724
Score = 469 (170.2 bits), Expect = 7.3e-47, Sum P(2) = 7.3e-47
Identities = 86/110 (78%), Positives = 99/110 (90%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKE
Sbjct: 398 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRNQYREDWKSKE 457
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
MRIRQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI+L+ E D
Sbjct: 458 MRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHIKLYPEID 507
Score = 49 (22.3 bits), Expect = 7.3e-47, Sum P(2) = 7.3e-47
Identities = 23/86 (26%), Positives = 36/86 (41%)
Query: 159 GHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINK- 217
G KWK + H V A E + VK+ + L+ + E A AK ++
Sbjct: 202 GVKWKFLEHKGPV--FAPPYEPLPSNVKFYYDGKAFMLRAGAE----EVATFFAKMLDHE 255
Query: 218 ------IRENYQADWKSKEMRIRQRA 237
R+N+ DW+ KEM ++A
Sbjct: 256 YTTKDVFRKNFFKDWR-KEMTSEEKA 280
Score = 46 (21.3 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 391 NHQRSVPKSH-DKSMGNLKEKISNKR--KQVKD-AERALKDAKKAGESKAMTDKKK 442
+H+ K H K + KE+ +K KD +++ KD +K TDK K
Sbjct: 24 HHKDKFKKEHKQKDLRKEKERDKSKHGNSDHKDFSDKKHKDKEKMKHKDGSTDKYK 79
Score = 45 (20.9 bits), Expect = 1.9e-46, Sum P(2) = 1.9e-46
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 398 KSHDKSMGNLKEKISNKRKQ--VKDAERALKDAKKAG 432
K D S K+K KRK+ +K + +K K+ G
Sbjct: 69 KHKDGSTDKYKDKYKEKRKEEKIKSFDYKVKSEKENG 105
>FB|FBgn0004924 [details] [associations]
symbol:Top1 "Topoisomerase 1" species:7227 "Drosophila
melanogaster" [GO:0006265 "DNA topological change" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003917 "DNA topoisomerase
type I activity" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0007275 "multicellular organismal development" evidence=IMP]
[GO:0003916 "DNA topoisomerase activity" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0030261 "chromosome condensation" evidence=IMP] [GO:0002168
"instar larval development" evidence=IMP] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009790 "embryo development"
evidence=IMP] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0006468 "protein
phosphorylation" evidence=IMP] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0031298 "replication fork protection complex" evidence=IBA]
[GO:0006338 "chromatin remodeling" evidence=IBA] [GO:0006260 "DNA
replication" evidence=IBA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 GO:GO:0005524 GO:GO:0005737 GO:GO:0005875
GO:GO:0007059 GO:GO:0005730 GO:GO:0008283 GO:GO:0006260
EMBL:AE014298 GO:GO:0048477 GO:GO:0006338 GO:GO:0009790
GO:GO:0004672 GO:GO:0005719 GO:GO:0030261 GO:GO:0002168
GO:GO:0005703 GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349
GO:GO:0003918 eggNOG:COG3569 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 CTD:7150 EMBL:M74557 EMBL:U80064 PIR:S35521
RefSeq:NP_001014742.1 RefSeq:NP_511161.2 UniGene:Dm.2912
ProteinModelPortal:P30189 SMR:P30189 IntAct:P30189 MINT:MINT-748832
STRING:P30189 PaxDb:P30189 PRIDE:P30189 GeneID:32458
KEGG:dme:Dmel_CG6146 FlyBase:FBgn0004924 InParanoid:P30189
OrthoDB:EOG4MCVFF ChiTaRS:TOP1 GenomeRNAi:32458 NextBio:778562
Bgee:P30189 GermOnline:CG6146 Uniprot:P30189
Length = 972
Score = 1695 (601.7 bits), Expect = 1.8e-174, P = 1.8e-174
Identities = 330/485 (68%), Positives = 380/485 (78%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS++ EE ATFYA+M+ H+Y TKE FN NF KD+RKSMT +ER +I D KC+F+
Sbjct: 467 GKPLELSEETEEAATFYAKMLNHDYCTKEVFNNNFFKDFRKSMTPREREIIKDFRKCNFQ 526
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +S A+ KE+G C IDGHKEKIGNFR+EPPGLFRG
Sbjct: 527 EMFNYFQAESEKRKAASKEEKLIKKNENEALMKEFGFCMIDGHKEKIGNFRLEPPGLFRG 586
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG +KRR+QA D+ INC KDSKVP PPPG +WKEVRHDN VTWLASW ENVQGQ
Sbjct: 587 RGEHPKMGMIKRRIQASDVSINCGKDSKVPSPPPGSRWKEVRHDNTVTWLASWIENVQGQ 646
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
VKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSKEMR+RQRAVALYFID
Sbjct: 647 VKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFID 706
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E +GK VV FDF GKDSIRYYNEV VE
Sbjct: 707 KLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVE 766
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
KRVFKNL+LF+E+KK DDLFDRLNT VLN+HL ELMEGLTAKVFRTYNAS TLQ QL+
Sbjct: 767 KRVFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDL 826
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVK--DAE 422
L DP + EK+LAYNRANRAVA+LCNHQRSVPKSH+KSM NLKEKI KR+ ++ ++E
Sbjct: 827 LTDPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAIEKCESE 886
Query: 423 RALKDAKKAGESKAMTDK-KKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPR 481
+D KK + + + D+ KK L TD++ENKTIALGTSKLNYLDPR
Sbjct: 887 YHSRDEKKGKQLERLRDQLKKLELQE------------TDRDENKTIALGTSKLNYLDPR 934
Query: 482 ISVTW 486
ISV W
Sbjct: 935 ISVAW 939
Score = 488 (176.8 bits), Expect = 7.3e-49, Sum P(2) = 7.3e-49
Identities = 93/113 (82%), Positives = 103/113 (91%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW ENVQGQVKYIMLNPSSKLKGEKD KYETAR+L K I+KIR Y+ +WKSK
Sbjct: 632 TVTWLASWIENVQGQVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSK 691
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKK 595
EMR+RQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEH+QLH+E + K+
Sbjct: 692 EMRVRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKE 744
Score = 57 (25.1 bits), Expect = 7.3e-49, Sum P(2) = 7.3e-49
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 395 SVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTA 444
S H S G+ K +K ++ KD +R + + S + DK++++
Sbjct: 122 SSSSKHKSSSGHHKRSSKDKERRDKDKDRGSSSSSRHKSSSSSRDKERSS 171
Score = 54 (24.1 bits), Expect = 1.5e-48, Sum P(2) = 1.5e-48
Identities = 16/67 (23%), Positives = 28/67 (41%)
Query: 400 HDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRXXXXXXXXXXXX 459
H S + K K S+K K +D ER K + + SK + K ++ +
Sbjct: 39 HSSSSSSSKHKSSSKDKH-RDREREHKSSNSSSSSK---EHKSSSRDKDRHKSSSSSSKH 94
Query: 460 TDKEENK 466
DK++ +
Sbjct: 95 RDKDKER 101
Score = 47 (21.6 bits), Expect = 8.2e-48, Sum P(2) = 8.2e-48
Identities = 18/74 (24%), Positives = 27/74 (36%)
Query: 392 HQRSVPKSH-DKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAM-TDKKKTALGRXX 449
H+ S H D+ + S+ K+ K + R KD K+ S + DK K G
Sbjct: 48 HKSSSKDKHRDREREHKSSNSSSSSKEHKSSSRD-KDRHKSSSSSSKHRDKDKERDGSSN 106
Query: 450 XXXXXXXXXXTDKE 463
DK+
Sbjct: 107 SHRSGSSSSHKDKD 120
Score = 47 (21.6 bits), Expect = 8.2e-48, Sum P(2) = 8.2e-48
Identities = 19/80 (23%), Positives = 38/80 (47%)
Query: 366 MDPDFSEAEKILAYNRANRAVAVLCNHQRS---VPKSHDKSMGNLKEKISNKRKQVKDAE 422
MD D + +LA + + + ++S V + GN+K K K+K K+ E
Sbjct: 349 MDNDDDDDIPLLARKKVKKEKIKKESKEKSKKRVKEEPSDDYGNVKPK---KKKMKKEPE 405
Query: 423 RALKDAKKAGESKAMTDKKK 442
A+ K+ ++KA ++++
Sbjct: 406 PAVSPGKRQ-KAKAKVEEEE 424
Score = 39 (18.8 bits), Expect = 5.7e-47, Sum P(2) = 5.7e-47
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 391 NHQRSVP----KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTA 444
+H+RS + DK G+ +D ER+ K + S + K ++
Sbjct: 133 HHKRSSKDKERRDKDKDRGSSSSSRHKSSSSSRDKERSSSSHKSSSSSSSSKSKHSSS 190
>UNIPROTKB|Q90WS0 [details] [associations]
symbol:top1alpha "Topoisomerase I alpha" species:31033
"Takifugu rubripes" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0031298 "replication fork protection complex" evidence=IBA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0007059
GO:GO:0005730 GO:GO:0006260 GO:GO:0006338 GO:GO:0031298
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569
HOGENOM:HOG000105469 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
HSSP:P11387 EMBL:AL035357 ProteinModelPortal:Q90WS0 SMR:Q90WS0
OrthoDB:EOG48GW2T Uniprot:Q90WS0
Length = 767
Score = 1695 (601.7 bits), Expect = 1.8e-174, P = 1.8e-174
Identities = 327/489 (66%), Positives = 381/489 (77%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKL+ AEE+ATF+A+M++HEYTTK+ F NF KDWRK MT +E++ ITDL+KC+F
Sbjct: 246 GKLMKLAAPAEEVATFFAKMLDHEYTTKDVFRKNFFKDWRKEMTSEEKSKITDLNKCNFA 305
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
M+ YF +S I +EYG C +D HKE+IGNFRIEPPGLFRG
Sbjct: 306 GMNDYFKAQSEARKQMSKEEKQKIKEDNERILQEYGFCIMDNHKERIGNFRIEPPGLFRG 365
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR++ EDIIINCSKDSK P PPPG KWKEVRHDN+VTWLASWTEN+QG
Sbjct: 366 RGDHPKMGMLKRRIRPEDIIINCSKDSKHPKPPPGTKWKEVRHDNKVTWLASWTENIQGS 425
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKEMRIRQRAVALYFID
Sbjct: 426 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRNQYREDWKSKEMRIRQRAVALYFID 485
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI L+ + D + YVV FDFLGKDSIRYYN +PV
Sbjct: 486 KLALRAGNEKEEGETADTVGCCSLRVEHINLYPKLDDQEYVVEFDFLGKDSIRYYNRIPV 545
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNKHL ELM+GLTAKVFRTYNASITLQQQL
Sbjct: 546 EKRVFKNLQLFLENKQPGDDLFDRLNTSILNKHLQELMDGLTAKVFRTYNASITLQQQLK 605
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL D S KIL+YNRANRAVA+LCNHQR+ PK+ +KSM NL+ KI K+KQ+ A +
Sbjct: 606 ELSCSDDSVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMQNLQTKIDEKQKQLSAARK 665
Query: 424 ALKDAK---KAG---ESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
LK AK KA +SK + K+ A+ R TD+EENK IALGTSKLNY
Sbjct: 666 QLKAAKAEHKASHDDKSKKAVEVKRKAVQRIEEQLMKLQVQATDREENKQIALGTSKLNY 725
Query: 478 LDPRISVTW 486
LDPRISV W
Sbjct: 726 LDPRISVAW 734
Score = 473 (171.6 bits), Expect = 1.7e-46, Sum P(2) = 1.7e-46
Identities = 86/113 (76%), Positives = 102/113 (90%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLASWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K +++IR Y+ DWKSKE
Sbjct: 412 VTWLASWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDRIRNQYREDWKSKE 471
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDEKK 595
MRIRQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI L+ + D+++
Sbjct: 472 MRIRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLYPKLDDQE 524
Score = 42 (19.8 bits), Expect = 1.7e-46, Sum P(2) = 1.7e-46
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKK 442
K DK N E + K+ +D ER LK + E K K
Sbjct: 42 KERDKFKHNNSEHKDHSEKKNRDNER-LKHTDSSSEKHREKHKDK 85
Score = 37 (18.1 bits), Expect = 5.7e-46, Sum P(2) = 5.7e-46
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 399 SHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTAL 445
S +K K+K +R++ K + KK E+ + D A+
Sbjct: 74 SSEKHREKHKDKDKERRREEKVKSSLIAKPKKEKENGYVRDLSPAAI 120
>UNIPROTKB|F1M1S6 [details] [associations]
symbol:F1M1S6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0005694
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 IPI:IPI00361978 Ensembl:ENSRNOT00000016719
Uniprot:F1M1S6
Length = 760
Score = 1674 (594.3 bits), Expect = 3.0e-172, P = 3.0e-172
Identities = 325/493 (65%), Positives = 373/493 (75%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATF+A+M++HEYTTKE F NF KDWRK MT E+ IT+LSKCDF
Sbjct: 244 GKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNDEKNTITNLSKCDFT 303
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+M YF +S + KEYG C +D HKE+I NF+IEPPGLFRG
Sbjct: 304 QMSQYFKAQSEARKQMSKEEKLKIKEENEKLLKEYGFCVMDNHKERIANFKIEPPGLFRG 363
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG HPKMG LKRR+ EDIIINCSKD+KVP PPPGHKWKEVRHDN+VTWL SWTEN+QG
Sbjct: 364 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPPPGHKWKEVRHDNKVTWLVSWTENIQGS 423
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKEM++RQRAVALYFID
Sbjct: 424 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFID 483
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEHI LH E DG +VV FDF GKDSIRYYN+VPV
Sbjct: 484 KLALRAGNEKEEGETADTVGCCSLRVEHINLHPELDG--HVVEFDFPGKDSIRYYNKVPV 541
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQ F+ENK+ DDLFDRLNT +LNKHL LMEGLTAKVFRTYNASITLQQQL
Sbjct: 542 EKRVFKNLQPFMENKQPEDDLFDRLNTGILNKHLQGLMEGLTAKVFRTYNASITLQQQLK 601
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
EL PD IL+YNRANRAVA+LCNHQR+ PK+ +KSM N + KI K+ Q+ DA +
Sbjct: 602 ELTAPD-ENVPAILSYNRANRAVAILCNHQRAPPKTFEKSMMN-QSKIDAKKDQLADARK 659
Query: 424 ALKDAK------KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
LK AK K ++K + KKK A+ R TD+EENK IALGTSKLNY
Sbjct: 660 DLKSAKADAKVMKDAKTKKVVSKKK-AVQRLEEQLMKLEVQATDREENKQIALGTSKLNY 718
Query: 478 LDPRISVTWLASW 490
LDPRI+V W W
Sbjct: 719 LDPRITVAWCKKW 731
Score = 474 (171.9 bits), Expect = 1.9e-48, Sum P(2) = 1.9e-48
Identities = 86/110 (78%), Positives = 98/110 (89%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K ++KIR Y+ DWKSKE
Sbjct: 410 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKE 469
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
M++RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEHI LH E D
Sbjct: 470 MKVRQRAVALYFIDKLALRAGNEKEEGETADTVGCCSLRVEHINLHPELD 519
Score = 111 (44.1 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 41/125 (32%), Positives = 64/125 (51%)
Query: 502 MLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF--IDKL 559
M+N SK+ +KD + ARK KS K D K+K++ +++AV + KL
Sbjct: 641 MMN-QSKIDAKKD--QLADARKDLKSA-KADAKVMKDAKTKKVVSKKKAVQRLEEQLMKL 696
Query: 560 ALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEK------KIYNKTQRAKFRWAIDMAT 613
++A +++E++ +G L ++ +K KIYNKTQR KF WAIDM
Sbjct: 697 EVQA-TDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTD 755
Query: 614 ADFVF 618
D+ F
Sbjct: 756 EDYEF 760
Score = 59 (25.8 bits), Expect = 1.9e-48, Sum P(2) = 1.9e-48
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 398 KSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKK 442
K H K +EK + + KD+E+ K+ +K +DK K
Sbjct: 34 KEHKKDKDKDREKSKHSNSEHKDSEKKHKEKEKTKHKDGNSDKHK 78
Score = 55 (24.4 bits), Expect = 5.1e-48, Sum P(2) = 5.1e-48
Identities = 25/82 (30%), Positives = 35/82 (42%)
Query: 157 PPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSIN 216
P G KWK + H V A E +Q VK+ KL + + E A AK ++
Sbjct: 212 PEGIKWKFLEHKGPV--FAPPYEPLQEGVKFYYDGKVMKLSPKAE----EVATFFAKMLD 265
Query: 217 K-------IRENYQADWKSKEM 231
R+N+ DW+ KEM
Sbjct: 266 HEYTTKEIFRKNFFKDWR-KEM 286
Score = 49 (22.3 bits), Expect = 2.2e-47, Sum P(2) = 2.2e-47
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 398 KSHDKSMGNLKE-KISNKRKQVKDAERALKDAKKAGESK 435
K ++ G LK+ K +K K+V + + K AKK E K
Sbjct: 164 KLEEEEDGKLKKPKNKDKDKKVAEPDNNKKKAKKEEEQK 202
Score = 45 (20.9 bits), Expect = 5.7e-47, Sum P(2) = 5.7e-47
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 392 HQRSVPKSHDKSMGNLKEKISNKRKQV-KDAERALKDAKK---AGESKAMTDKK 441
H+ S K +K K+ S+K K KD ++ + +K AG++K +K+
Sbjct: 54 HKDSEKKHKEKEKTKHKDGNSDKHKDKHKDRDKEKRKEEKIRVAGDAKIKKEKE 107
Score = 37 (18.1 bits), Expect = 4.0e-46, Sum P(2) = 4.0e-46
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 146 NCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTE 179
N KD KV P +K K+ + + + W W E
Sbjct: 178 NKDKDKKVAEPD-NNK-KKAKKEEEQKW--KWWE 207
>UNIPROTKB|F1SEV4 [details] [associations]
symbol:F1SEV4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0005694
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 GeneTree:ENSGT00390000016347 EMBL:FP085504
Ensembl:ENSSSCT00000007623 Uniprot:F1SEV4
Length = 522
Score = 1584 (562.7 bits), Expect = 1.1e-170, Sum P(2) = 1.1e-170
Identities = 301/489 (61%), Positives = 363/489 (74%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATFY +M+EHEYTTKE F NF +DWRK MT ER VI LSKCDF
Sbjct: 1 GKPMKLSLAAEEVATFYGKMLEHEYTTKEVFRHNFFRDWRKEMTAAERKVIKRLSKCDFT 60
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H +F ++ + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 61 EIHRHFADRAAARRALPREEKQRLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRG 120
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV ED+ INC +DSKVP PP GH+WKEVR D VTWLA+WTENVQ
Sbjct: 121 RGDHPKMGMLKRRVLPEDVTINCGRDSKVPEPPAGHQWKEVRSDRTVTWLAAWTENVQNA 180
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+MLNPSSKLKGE+DW+KYE AR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 181 TKYVMLNPSSKLKGERDWEKYEVARRLKGVVDEIRSRYRADWKSREMKARQRAVALYFID 240
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEH+QLH E DG PYVV FDFLGKDSIRYYN+VPV
Sbjct: 241 KLALRAGNEKEEGESADTVGCCSLRVEHVQLHPEADGCPYVVEFDFLGKDSIRYYNKVPV 300
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V++NLQLF+ENK ++LFDRL T+ LNKHL +LM+GLTAKVFRTYNASITLQ QL
Sbjct: 301 EKPVYRNLQLFLENKDPGEELFDRLTTASLNKHLQDLMDGLTAKVFRTYNASITLQGQLR 360
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A K+L+YNRANRAVAVLCNHQR+ PK+ +KSM L+ KI K++QV +A+
Sbjct: 361 ALTRAEDSIAAKLLSYNRANRAVAVLCNHQRAPPKTFEKSMQALRSKIEAKKQQVAEAKA 420
Query: 424 ALKDAKKA------GESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
L+ A+ G + +K++ L + TDKEE K +ALGTSKLNY
Sbjct: 421 ELEKARAGHASREDGRMQFFLEKRRRRLEKLEEQLVRLGTQATDKEEGKQVALGTSKLNY 480
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 481 LDPRISIAW 489
Score = 452 (164.2 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 82/111 (73%), Positives = 97/111 (87%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTENVQ KY+MLNPSSKLKGE+DW+KYE AR+L +++IR Y+ADWKS+
Sbjct: 166 TVTWLAAWTENVQNATKYVMLNPSSKLKGERDWEKYEVARRLKGVVDEIRSRYRADWKSR 225
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEH+QLH E D
Sbjct: 226 EMKARQRAVALYFIDKLALRAGNEKEEGESADTVGCCSLRVEHVQLHPEAD 276
Score = 97 (39.2 bits), Expect = 1.1e-170, Sum P(2) = 1.1e-170
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 594 KKIYNKTQRAKFRWAIDMATADFVF 618
+KIYNKTQR KF WA+DMA DF F
Sbjct: 498 EKIYNKTQREKFAWALDMAGEDFEF 522
>UNIPROTKB|I3LTP0 [details] [associations]
symbol:LOC100628093 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0005694
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 GeneTree:ENSGT00390000016347 EMBL:CU655901
Ensembl:ENSSSCT00000029650 OMA:VVINCSX Uniprot:I3LTP0
Length = 605
Score = 1584 (562.7 bits), Expect = 1.1e-170, Sum P(2) = 1.1e-170
Identities = 301/489 (61%), Positives = 363/489 (74%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK MKLS AEE+ATFY +M+EHEYTTKE F NF +DWRK MT ER VI LSKCDF
Sbjct: 84 GKPMKLSLAAEEVATFYGKMLEHEYTTKEVFRHNFFRDWRKEMTAAERKVIKRLSKCDFT 143
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H +F ++ + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 144 EIHRHFADRAAARRALPREEKQRLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRG 203
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV ED+ INC +DSKVP PP GH+WKEVR D VTWLA+WTENVQ
Sbjct: 204 RGDHPKMGMLKRRVLPEDVTINCGRDSKVPEPPAGHQWKEVRSDRTVTWLAAWTENVQNA 263
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY+MLNPSSKLKGE+DW+KYE AR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 264 TKYVMLNPSSKLKGERDWEKYEVARRLKGVVDEIRSRYRADWKSREMKARQRAVALYFID 323
Query: 245 KLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK+E + ADTVGCCSLRVEH+QLH E DG PYVV FDFLGKDSIRYYN+VPV
Sbjct: 324 KLALRAGNEKEEGESADTVGCCSLRVEHVQLHPEADGCPYVVEFDFLGKDSIRYYNKVPV 383
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V++NLQLF+ENK ++LFDRL T+ LNKHL +LM+GLTAKVFRTYNASITLQ QL
Sbjct: 384 EKPVYRNLQLFLENKDPGEELFDRLTTASLNKHLQDLMDGLTAKVFRTYNASITLQGQLR 443
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A K+L+YNRANRAVAVLCNHQR+ PK+ +KSM L+ KI K++QV +A+
Sbjct: 444 ALTRAEDSIAAKLLSYNRANRAVAVLCNHQRAPPKTFEKSMQALRSKIEAKKQQVAEAKA 503
Query: 424 ALKDAKKA------GESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
L+ A+ G + +K++ L + TDKEE K +ALGTSKLNY
Sbjct: 504 ELEKARAGHASREDGRMQFFLEKRRRRLEKLEEQLVRLGTQATDKEEGKQVALGTSKLNY 563
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 564 LDPRISIAW 572
Score = 452 (164.2 bits), Expect = 3.3e-51, Sum P(2) = 3.3e-51
Identities = 82/111 (73%), Positives = 97/111 (87%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTENVQ KY+MLNPSSKLKGE+DW+KYE AR+L +++IR Y+ADWKS+
Sbjct: 249 TVTWLAAWTENVQNATKYVMLNPSSKLKGERDWEKYEVARRLKGVVDEIRSRYRADWKSR 308
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDE-DQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK+E + ADTVGCCSLRVEH+QLH E D
Sbjct: 309 EMKARQRAVALYFIDKLALRAGNEKEEGESADTVGCCSLRVEHVQLHPEAD 359
Score = 97 (39.2 bits), Expect = 1.1e-170, Sum P(2) = 1.1e-170
Identities = 18/25 (72%), Positives = 20/25 (80%)
Query: 594 KKIYNKTQRAKFRWAIDMATADFVF 618
+KIYNKTQR KF WA+DMA DF F
Sbjct: 581 EKIYNKTQREKFAWALDMAGEDFEF 605
>ZFIN|ZDB-GENE-040624-2 [details] [associations]
symbol:top1mt "mitochondrial topoisomerase I"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0006265 "DNA topological
change" evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 ZFIN:ZDB-GENE-040624-2 GO:GO:0005694 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 CTD:116447 HOVERGEN:HBG007988
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741 HSSP:P11387
eggNOG:NOG317235 EMBL:BC096851 EMBL:AY429655 IPI:IPI00513305
RefSeq:NP_001001838.1 UniGene:Dr.79693 SMR:Q6T721 GeneID:415098
KEGG:dre:415098 NextBio:20818783 Uniprot:Q6T721
Length = 600
Score = 1636 (581.0 bits), Expect = 3.2e-168, P = 3.2e-168
Identities = 304/488 (62%), Positives = 377/488 (77%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+++KLS EEIATFYA+M++HEYTTKE F NF KDWRK MT++ER +IT LSKCDF
Sbjct: 80 GQQVKLSPLTEEIATFYAKMLDHEYTTKEVFQKNFFKDWRKEMTKEERKLITTLSKCDFT 139
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+H YFV+K+ + +E+G C +DGH+EKIGNF++EPPGLFRG
Sbjct: 140 HIHKYFVEKAEEKKNMTKEEKQVLKDEAARLMEEFGYCLLDGHREKIGNFKLEPPGLFRG 199
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RGEHPKMG+LK+R+Q ED+ INCSKDSK+P PP GHKWK V+HDN VTWLASW EN+ +
Sbjct: 200 RGEHPKMGRLKKRIQPEDVAINCSKDSKIPEPPAGHKWKRVQHDNTVTWLASWLENIPKR 259
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYIMLNPSSKLKGEKDWQKYETAR+L + + IR+ Y DWKS+EM+ RQR VA+YFID
Sbjct: 260 PKYIMLNPSSKLKGEKDWQKYETARRLKECVKSIRKRYMQDWKSREMKSRQRGVAIYFID 319
Query: 245 KLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE 304
KLALRAGNEKD++ ADTVGCCSLRVEHI+LH+ DG +VV FDFLGKDSIRYYN+VPVE
Sbjct: 320 KLALRAGNEKDDESADTVGCCSLRVEHIRLHKHLDGLDHVVEFDFLGKDSIRYYNKVPVE 379
Query: 305 KRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNE 364
K+VFKNL+LF+++K DDLFDR++T LNK L+E M GLTAKVFRT+NAS TLQ QLN+
Sbjct: 380 KQVFKNLKLFIKHKDPEDDLFDRISTVNLNKALTESMSGLTAKVFRTFNASTTLQDQLNK 439
Query: 365 LMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERA 424
L D + EKIL+YNRANRAVA+LCNHQR+ PK+ +KSM L+EKI K++Q+++A +
Sbjct: 440 LTSDDCTVEEKILSYNRANRAVAILCNHQRAAPKTFEKSMQLLQEKIQKKKEQIEEARKE 499
Query: 425 LKDAKK------AGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYL 478
LK+AK+ + +S + +KK+ A+ R TD+EENK IALGTSKLNYL
Sbjct: 500 LKEAKQVDKDTPSDKSSKLVEKKQKAVQRLCDQLKKLQLQETDREENKVIALGTSKLNYL 559
Query: 479 DPRISVTW 486
DPRI+V W
Sbjct: 560 DPRITVAW 567
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 80/110 (72%), Positives = 94/110 (85%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLASW EN+ + KYIMLNPSSKLKGEKDWQKYETAR+L + + IR+ Y DWKS+
Sbjct: 245 TVTWLASWLENIPKRPKYIMLNPSSKLKGEKDWQKYETARRLKECVKSIRKRYMQDWKSR 304
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKD 592
EM+ RQR VA+YFIDKLALRAGNEKD++ ADTVGCCSLRVEHI+LH+ D
Sbjct: 305 EMKSRQRGVAIYFIDKLALRAGNEKDDESADTVGCCSLRVEHIRLHKHLD 354
>UNIPROTKB|Q969P6 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003917 "DNA topoisomerase type I activity"
evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0031298 "replication fork protection complex" evidence=IBA]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 GO:GO:0005524 GO:GO:0005694 GO:GO:0006260
DrugBank:DB01030 GO:GO:0042645 DrugBank:DB00762 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 EMBL:AF349031 EMBL:AF349018
EMBL:AF349019 EMBL:AF349020 EMBL:AF349021 EMBL:AF349022
EMBL:AF349023 EMBL:AF349024 EMBL:AF349025 EMBL:AF349026
EMBL:AF349027 EMBL:AF349028 EMBL:AF349029 EMBL:AF349030
EMBL:AF349017 EMBL:AK316380 EMBL:AC087793 EMBL:BC044646
EMBL:BC052285 EMBL:BC071914 IPI:IPI00465141 IPI:IPI00984931
RefSeq:NP_001245375.1 RefSeq:NP_001245376.1 RefSeq:NP_443195.1
UniGene:Hs.528574 ProteinModelPortal:Q969P6 SMR:Q969P6
STRING:Q969P6 PhosphoSite:Q969P6 DMDM:20140694 PaxDb:Q969P6
PRIDE:Q969P6 Ensembl:ENST00000329245 Ensembl:ENST00000519148
GeneID:116447 KEGG:hsa:116447 UCSC:uc003yxz.3 CTD:116447
GeneCards:GC08M144391 HGNC:HGNC:29787 HPA:HPA001915 HPA:HPA021542
MIM:606387 neXtProt:NX_Q969P6 PharmGKB:PA134922772 eggNOG:COG3569
HOGENOM:HOG000105469 HOVERGEN:HBG007988 InParanoid:Q969P6 KO:K03163
OMA:PEADGCQ OrthoDB:EOG49S667 PhylomeDB:Q969P6 GenomeRNAi:116447
NextBio:79927 ArrayExpress:Q969P6 Bgee:Q969P6 CleanEx:HS_TOP1MT
Genevestigator:Q969P6 GermOnline:ENSG00000184428 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 Uniprot:Q969P6
Length = 601
Score = 1602 (569.0 bits), Expect = 1.3e-164, P = 1.3e-164
Identities = 303/489 (61%), Positives = 368/489 (75%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ ++LS AEE+ATFY RM++HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 80 GRPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFT 139
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ + +E+G C +DGH+EKIGNF+IEPPGLFRG
Sbjct: 140 EIHRYFVDKAAARKVLSREEKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRG 199
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ
Sbjct: 200 RGDHPKMGMLKRRITPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNS 259
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 260 IKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 319
Query: 245 KLALRAGNEKDEDQA-DTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK++ +A DTVGCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPV
Sbjct: 320 KLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPV 379
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNLQLF+ENK DDLFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL
Sbjct: 380 EKPVYKNLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLR 439
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A
Sbjct: 440 ALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARA 499
Query: 424 ALKDAK---KA---GESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
L+ A+ KA G+S+++ +KK+ L + TDKEENK +ALGTSKLNY
Sbjct: 500 ELRRARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNY 559
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 560 LDPRISIAW 568
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 80/111 (72%), Positives = 96/111 (86%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 245 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 304
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQA-DTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK++ +A DTVGCCSLRVEH+QLH E D
Sbjct: 305 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 355
>UNIPROTKB|A9Q1D5 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9598 "Pan troglodytes" [GO:0003917 "DNA topoisomerase type
I activity" evidence=IBA] [GO:0006260 "DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0042645 "mitochondrial nucleoid" evidence=IBA] [GO:0005730
"nucleolus" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0031298 "replication fork protection complex" evidence=IBA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR009054
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0005524
GO:GO:0005694 GO:GO:0006260 GO:GO:0042645 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 CTD:116447 eggNOG:COG3569
HOGENOM:HOG000105469 KO:K03163 OrthoDB:EOG49S667 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 EMBL:EF421830 RefSeq:NP_001106268.1
UniGene:Ptr.6282 ProteinModelPortal:A9Q1D5 SMR:A9Q1D5 GeneID:472883
KEGG:ptr:472883 InParanoid:A9Q1D5 NextBio:20849513 Uniprot:A9Q1D5
Length = 601
Score = 1592 (565.5 bits), Expect = 1.5e-163, P = 1.5e-163
Identities = 302/489 (61%), Positives = 367/489 (75%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS AEE+ATFY RM+ HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 80 GKPVRLSVAAEEVATFYGRMLGHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFT 139
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H YFV K+ + +E+G C +DGH+EKIGNF+IEPPGLFRG
Sbjct: 140 EIHRYFVDKAAARKVLSREEKQKLKEEAEKLQREFGYCILDGHQEKIGNFKIEPPGLFRG 199
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRR+ ED++INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ
Sbjct: 200 RGDHPKMGMLKRRIMPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNS 259
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 260 IKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 319
Query: 245 KLALRAGNEKDEDQA-DTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEK++ +A DTVGCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPV
Sbjct: 320 KLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPV 379
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK V+KNLQLF+E+K D+LFDRL T+ LNKHL ELM+GLTAKVFRTYNASITLQ+QL
Sbjct: 380 EKPVYKNLQLFMESKGPRDNLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLR 439
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAER 423
L + S A KIL+YNRANR VA+LCNHQR+ P + +KSM NL+ KI K++QV +A
Sbjct: 440 ALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARA 499
Query: 424 ALKDAK---KA---GESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNY 477
L+ A+ KA G+S+++ +KK+ L + TDKEENK +ALGTSKLNY
Sbjct: 500 ELRRARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNY 559
Query: 478 LDPRISVTW 486
LDPRIS+ W
Sbjct: 560 LDPRISIAW 568
Score = 436 (158.5 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 80/111 (72%), Positives = 96/111 (86%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 245 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 304
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQA-DTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK++ +A DTVGCCSLRVEH+QLH E D
Sbjct: 305 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 355
Score = 51 (23.0 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 29/124 (23%), Positives = 49/124 (39%)
Query: 159 GHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINK- 217
G KW+++ H + A E + V++ +L + R L
Sbjct: 50 GVKWRQLEHKGP--YFAPPYEPLPDGVRFFYEGKPVRLSVAAEEVATFYGRMLGHEYTTK 107
Query: 218 --IRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLH 275
R+N+ DW+ KEM + +R V + +DK + D+A S R E +L
Sbjct: 108 EVFRKNFFNDWR-KEMAVEEREV-IKSLDKCDFTEIHRYFVDKAAARKVLS-REEKQKLK 164
Query: 276 EEKD 279
EE +
Sbjct: 165 EEAE 168
>WB|WBGene00006595 [details] [associations]
symbol:top-1 species:6239 "Caenorhabditis elegans"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0045132 "meiotic
chromosome segregation" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP] [GO:0008406
"gonad development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0031616 "spindle pole centrosome"
evidence=IDA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0002119 GO:GO:0006260
GO:GO:0018996 GO:GO:0010171 GO:GO:0040011 GO:GO:0048477
GO:GO:0006338 GO:GO:0045132 GO:GO:0031616 GO:GO:0031298
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569
HOGENOM:HOG000105469 KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
HSSP:P11387 GeneTree:ENSGT00390000016347 EMBL:X96762 EMBL:Z93385
PIR:S65469 PIR:T23647 PIR:T23648 RefSeq:NP_001021578.1
RefSeq:NP_493337.1 ProteinModelPortal:O17966 SMR:O17966
STRING:O17966 PaxDb:O17966 PRIDE:O17966 EnsemblMetazoa:M01E5.5a
GeneID:266847 KEGG:cel:CELE_M01E5.5 UCSC:M01E5.5b CTD:266847
WormBase:M01E5.5a WormBase:M01E5.5b InParanoid:O17966 OMA:DESEYST
NextBio:953260 Uniprot:O17966
Length = 806
Score = 1555 (552.4 bits), Expect = 1.2e-159, P = 1.2e-159
Identities = 305/491 (62%), Positives = 369/491 (75%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GG++MKL+ + EEIA FYA +++HEY+TKEAFN NFMKDWRK MT +ER I DL KCDF
Sbjct: 285 GGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFNKNFMKDWRKVMTVEERERIHDLKKCDF 344
Query: 64 RKMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
R + AY ++ A K YG+ IDGH++K+ NFRIEPPG+FR
Sbjct: 345 RAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVKIYGIAIIDGHRQKVANFRIEPPGVFR 404
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPKMG +K+R+ ED+IINC KD+++P PPPGHKWKEVRHDN VTWL SWTE+V G
Sbjct: 405 GRGGHPKMGLIKKRIMPEDVIINCGKDTEIPKPPPGHKWKEVRHDNTVTWLCSWTESVLG 464
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
Q KYIMLNPSSK+KGEKD++KYETAR+L K I IRE Y D+KSKEMR+RQRA ALYFI
Sbjct: 465 QNKYIMLNPSSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSKEMRVRQRATALYFI 524
Query: 244 DKLALRAGNEKDEDQA-DTVGCCSLRVEHIQL-------HEEKDGKPYVVCFDFLGKDSI 295
DKLALRAGNEKD D+A DTVGCCSLRVEHI+L ++K K +VV FDFLGKDSI
Sbjct: 525 DKLALRAGNEKDVDEAADTVGCCSLRVEHIKLFDSAKLNEDDKKEKEFVVEFDFLGKDSI 584
Query: 296 RYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNAS 355
RY+N V VEKRV+KNL++F+E K SDDLFDRL+T+ LN HL LM+GLT KVFRTYNAS
Sbjct: 585 RYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDRLDTATLNDHLRSLMDGLTVKVFRTYNAS 644
Query: 356 ITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKR 415
ITLQ+QL +L +P + A KIL+YNRANR VA+LCNHQR+V K D+SM L++KI +K+
Sbjct: 645 ITLQEQLIKLTNPKDNVAAKILSYNRANRQVAILCNHQRAVSKGFDESMQKLEQKIKDKK 704
Query: 416 KQVKDAERALKDAKKAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKL 475
K+VK+AE ALK A+ A + KA +KK R TDK+ENK IALGTSKL
Sbjct: 705 KEVKEAEAALKSARGAEKEKA---QKK--YDRLKEQLKKLKISRTDKDENKQIALGTSKL 759
Query: 476 NYLDPRISVTW 486
NY+DPRI+V W
Sbjct: 760 NYIDPRITVAW 770
Score = 432 (157.1 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
Identities = 86/118 (72%), Positives = 99/118 (83%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWTE+V GQ KYIMLNPSSK+KGEKD++KYETAR+L K I IRE Y D+KSK
Sbjct: 451 TVTWLCSWTESVLGQNKYIMLNPSSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSK 510
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQA-DTVGCCSLRVEHIQLHEE----KDEKK 595
EMR+RQRA ALYFIDKLALRAGNEKD D+A DTVGCCSLRVEHI+L + +D+KK
Sbjct: 511 EMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGCCSLRVEHIKLFDSAKLNEDDKK 568
Score = 69 (29.3 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
Identities = 36/159 (22%), Positives = 66/159 (41%)
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
G+ E PK K+K+ EDI ++ K P G KW ++H +
Sbjct: 226 GKKEPPKK-KVKKEEDIEDIWEWWKEEKK----PAGVKWNSLQHCGPLFAPPYIPLPSHV 280
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINK-IRENYQADWKSKEMRIRQRAVALYF 242
KY L+ E+ Q Y S + +N+ DW+ K M + +R ++
Sbjct: 281 HFKYGGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFNKNFMKDWR-KVMTVEERE-RIHD 338
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGK 281
+ K RA + ++Q + + + E +++ EEK+ +
Sbjct: 339 LKKCDFRAIDAYQKEQRE-IRKAMTKEEKLKIKEEKEAE 376
Score = 41 (19.5 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 9/51 (17%), Positives = 26/51 (50%)
Query: 393 QRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKT 443
+R + +K K+++ + +++K+ + +D+ + KA K+K+
Sbjct: 161 ERRKKEKREKKERKEKKRLEKENRKIKEEDD--EDSDDEDDEKAKKKKRKS 209
Score = 40 (19.1 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 408 KEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTA 444
K K S K + KD +D K + K+ + KK A
Sbjct: 74 KRKSSAKNGKKKDVGSDSEDDYKPEKKKSKKNNKKKA 110
Score = 39 (18.8 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 12/58 (20%), Positives = 21/58 (36%)
Query: 409 EKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENK 466
EK +K+ K A+ + +D + E + K + TD EE +
Sbjct: 98 EKKKSKKNNKKKAQESSEDDDEESEGDVSEEDVKPQIHSDDELEEEDEAPTTDDEEEQ 155
Score = 37 (18.1 bits), Expect = 3.6e-41, Sum P(2) = 3.6e-41
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK 430
P + D+ KEK +RK+ K ++ K+ K+
Sbjct: 147 PTTDDEEEQKRKEK--ERRKKEKREKKERKEKKR 178
>UNIPROTKB|O17966 [details] [associations]
symbol:top-1 "DNA topoisomerase 1" species:6239
"Caenorhabditis elegans" [GO:0031298 "replication fork protection
complex" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0005730 GO:GO:0008406 GO:GO:0002119
GO:GO:0006260 GO:GO:0018996 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0006338 GO:GO:0045132 GO:GO:0031616
GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
eggNOG:COG3569 HOGENOM:HOG000105469 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
SUPFAM:SSF56741 HSSP:P11387 GeneTree:ENSGT00390000016347
EMBL:X96762 EMBL:Z93385 PIR:S65469 PIR:T23647 PIR:T23648
RefSeq:NP_001021578.1 RefSeq:NP_493337.1 ProteinModelPortal:O17966
SMR:O17966 STRING:O17966 PaxDb:O17966 PRIDE:O17966
EnsemblMetazoa:M01E5.5a GeneID:266847 KEGG:cel:CELE_M01E5.5
UCSC:M01E5.5b CTD:266847 WormBase:M01E5.5a WormBase:M01E5.5b
InParanoid:O17966 OMA:DESEYST NextBio:953260 Uniprot:O17966
Length = 806
Score = 1555 (552.4 bits), Expect = 1.2e-159, P = 1.2e-159
Identities = 305/491 (62%), Positives = 369/491 (75%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
GG++MKL+ + EEIA FYA +++HEY+TKEAFN NFMKDWRK MT +ER I DL KCDF
Sbjct: 285 GGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFNKNFMKDWRKVMTVEERERIHDLKKCDF 344
Query: 64 RKMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
R + AY ++ A K YG+ IDGH++K+ NFRIEPPG+FR
Sbjct: 345 RAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVKIYGIAIIDGHRQKVANFRIEPPGVFR 404
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPKMG +K+R+ ED+IINC KD+++P PPPGHKWKEVRHDN VTWL SWTE+V G
Sbjct: 405 GRGGHPKMGLIKKRIMPEDVIINCGKDTEIPKPPPGHKWKEVRHDNTVTWLCSWTESVLG 464
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
Q KYIMLNPSSK+KGEKD++KYETAR+L K I IRE Y D+KSKEMR+RQRA ALYFI
Sbjct: 465 QNKYIMLNPSSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSKEMRVRQRATALYFI 524
Query: 244 DKLALRAGNEKDEDQA-DTVGCCSLRVEHIQL-------HEEKDGKPYVVCFDFLGKDSI 295
DKLALRAGNEKD D+A DTVGCCSLRVEHI+L ++K K +VV FDFLGKDSI
Sbjct: 525 DKLALRAGNEKDVDEAADTVGCCSLRVEHIKLFDSAKLNEDDKKEKEFVVEFDFLGKDSI 584
Query: 296 RYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNAS 355
RY+N V VEKRV+KNL++F+E K SDDLFDRL+T+ LN HL LM+GLT KVFRTYNAS
Sbjct: 585 RYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDRLDTATLNDHLRSLMDGLTVKVFRTYNAS 644
Query: 356 ITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKR 415
ITLQ+QL +L +P + A KIL+YNRANR VA+LCNHQR+V K D+SM L++KI +K+
Sbjct: 645 ITLQEQLIKLTNPKDNVAAKILSYNRANRQVAILCNHQRAVSKGFDESMQKLEQKIKDKK 704
Query: 416 KQVKDAERALKDAKKAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKL 475
K+VK+AE ALK A+ A + KA +KK R TDK+ENK IALGTSKL
Sbjct: 705 KEVKEAEAALKSARGAEKEKA---QKK--YDRLKEQLKKLKISRTDKDENKQIALGTSKL 759
Query: 476 NYLDPRISVTW 486
NY+DPRI+V W
Sbjct: 760 NYIDPRITVAW 770
Score = 432 (157.1 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
Identities = 86/118 (72%), Positives = 99/118 (83%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWL SWTE+V GQ KYIMLNPSSK+KGEKD++KYETAR+L K I IRE Y D+KSK
Sbjct: 451 TVTWLCSWTESVLGQNKYIMLNPSSKIKGEKDFEKYETARRLKKKIGGIRERYTDDFKSK 510
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQA-DTVGCCSLRVEHIQLHEE----KDEKK 595
EMR+RQRA ALYFIDKLALRAGNEKD D+A DTVGCCSLRVEHI+L + +D+KK
Sbjct: 511 EMRVRQRATALYFIDKLALRAGNEKDVDEAADTVGCCSLRVEHIKLFDSAKLNEDDKK 568
Score = 69 (29.3 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
Identities = 36/159 (22%), Positives = 66/159 (41%)
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
G+ E PK K+K+ EDI ++ K P G KW ++H +
Sbjct: 226 GKKEPPKK-KVKKEEDIEDIWEWWKEEKK----PAGVKWNSLQHCGPLFAPPYIPLPSHV 280
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINK-IRENYQADWKSKEMRIRQRAVALYF 242
KY L+ E+ Q Y S + +N+ DW+ K M + +R ++
Sbjct: 281 HFKYGGEKMKLTLETEEIAQFYAGVLDHEYSTKEAFNKNFMKDWR-KVMTVEERE-RIHD 338
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGK 281
+ K RA + ++Q + + + E +++ EEK+ +
Sbjct: 339 LKKCDFRAIDAYQKEQRE-IRKAMTKEEKLKIKEEKEAE 376
Score = 41 (19.5 bits), Expect = 1.4e-41, Sum P(2) = 1.4e-41
Identities = 9/51 (17%), Positives = 26/51 (50%)
Query: 393 QRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKT 443
+R + +K K+++ + +++K+ + +D+ + KA K+K+
Sbjct: 161 ERRKKEKREKKERKEKKRLEKENRKIKEEDD--EDSDDEDDEKAKKKKRKS 209
Score = 40 (19.1 bits), Expect = 1.7e-41, Sum P(2) = 1.7e-41
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 408 KEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTA 444
K K S K + KD +D K + K+ + KK A
Sbjct: 74 KRKSSAKNGKKKDVGSDSEDDYKPEKKKSKKNNKKKA 110
Score = 39 (18.8 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 12/58 (20%), Positives = 21/58 (36%)
Query: 409 EKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENK 466
EK +K+ K A+ + +D + E + K + TD EE +
Sbjct: 98 EKKKSKKNNKKKAQESSEDDDEESEGDVSEEDVKPQIHSDDELEEEDEAPTTDDEEEQ 155
Score = 37 (18.1 bits), Expect = 3.6e-41, Sum P(2) = 3.6e-41
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 397 PKSHDKSMGNLKEKISNKRKQVKDAERALKDAKK 430
P + D+ KEK +RK+ K ++ K+ K+
Sbjct: 147 PTTDDEEEQKRKEK--ERRKKEKREKKERKEKKR 178
>RGD|1303177 [details] [associations]
symbol:Top1mt "topoisomerase (DNA) I, mitochondrial"
species:10116 "Rattus norvegicus" [GO:0003917 "DNA topoisomerase
type I activity" evidence=IBA] [GO:0003918 "DNA topoisomerase type
II (ATP-hydrolyzing) activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IBA]
[GO:0005739 "mitochondrion" evidence=ISO] [GO:0006260 "DNA
replication" evidence=IBA] [GO:0006265 "DNA topological change"
evidence=IBA] [GO:0006338 "chromatin remodeling" evidence=IBA]
[GO:0007059 "chromosome segregation" evidence=IBA] [GO:0031298
"replication fork protection complex" evidence=IBA] [GO:0042645
"mitochondrial nucleoid" evidence=ISO;IBA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR009054 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 RGD:1303177 GO:GO:0005524 GO:GO:0005694 GO:GO:0006260
GO:GO:0042645 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
CTD:116447 eggNOG:COG3569 HOGENOM:HOG000105469 KO:K03163
OMA:PEADGCQ OrthoDB:EOG49S667 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
HSSP:P11387 GeneTree:ENSGT00390000016347 EMBL:BK001786
IPI:IPI00366432 RefSeq:NP_001002798.1 UniGene:Rn.31307
ProteinModelPortal:Q6IM78 SMR:Q6IM78 PRIDE:Q6IM78
Ensembl:ENSRNOT00000009965 GeneID:300029 KEGG:rno:300029
UCSC:RGD:1303177 InParanoid:Q6IM78 NextBio:646149
Genevestigator:Q6IM78 Uniprot:Q6IM78
Length = 593
Score = 1496 (531.7 bits), Expect = 2.2e-153, P = 2.2e-153
Identities = 288/488 (59%), Positives = 356/488 (72%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK ++LS AEE+ATFY +M+ E TTKE F NF DW+K MT +ER +IT L KCDF
Sbjct: 73 GKPVRLSLAAEEVATFYGKMLHLECTTKEVFRRNFFSDWQKEMTAEERKLITHLDKCDFS 132
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H +F++++ + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 133 EIHRHFMERAEARRTLPREQKQKLKEEAEKLQQEFGYCILDGHREKIGNFKTEPPGLFRG 192
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV ED++INCS+DSK+P PP GH+WKEVR DN V WLA+W EN+Q
Sbjct: 193 RGDHPKMGMLKRRVMPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVMWLAAWVENIQNS 252
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KYI+LNPSSK KGE DWQKYE AR+L ++KIR YQADWKS EM+ RQ AVALYFID
Sbjct: 253 FKYIILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSPEMKKRQLAVALYFID 312
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALR GNEK+E + ADTVGCCSLRVEH++LH DG+ +VV DFLGKDSIRY N V V
Sbjct: 313 KLALRTGNEKEEGETADTVGCCSLRVEHVRLHTPADGQEHVVELDFLGKDSIRYKNHVTV 372
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK VF+NLQ F+E+K DDLFD L TS LNKHL +LMEGLTAKVFRTYNASITLQ+QL
Sbjct: 373 EKLVFQNLQHFMEDKDPRDDLFDALTTSSLNKHLQDLMEGLTAKVFRTYNASITLQEQLR 432
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE- 422
L + S K+LAYNRANRAVAVLCNHQR++PK+ ++SM L++KI K+ QV +A+
Sbjct: 433 VLTRAEDSLTCKVLAYNRANRAVAVLCNHQRAIPKTFEESMQTLQKKIETKKAQVAEAQV 492
Query: 423 ---RALKDAKKAGESKAMTD-KKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYL 478
+A D + G+SK+ + +K+ L + TDKEENK +ALGT+KLNYL
Sbjct: 493 ELQKAETDLRMRGDSKSKSFLQKQQRLLKLEEQLARLCTKATDKEENKQVALGTAKLNYL 552
Query: 479 DPRISVTW 486
DPRIS+ W
Sbjct: 553 DPRISIAW 560
Score = 410 (149.4 bits), Expect = 9.1e-37, P = 9.1e-37
Identities = 77/111 (69%), Positives = 89/111 (80%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA+W EN+Q KYI+LNPSSK KGE DWQKYE AR+L ++KIR YQADWKS
Sbjct: 238 TVMWLAAWVENIQNSFKYIILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSP 297
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
EM+ RQ AVALYFIDKLALR GNEK+E + ADTVGCCSLRVEH++LH D
Sbjct: 298 EMKKRQLAVALYFIDKLALRTGNEKEEGETADTVGCCSLRVEHVRLHTPAD 348
>MGI|MGI:1920210 [details] [associations]
symbol:Top1mt "DNA topoisomerase 1, mitochondrial"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003916
"DNA topoisomerase activity" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IBA] [GO:0003918 "DNA
topoisomerase type II (ATP-hydrolyzing) activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0042645 "mitochondrial
nucleoid" evidence=ISO;IBA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 MGI:MGI:1920210
GO:GO:0005524 GO:GO:0005694 GO:GO:0006260 EMBL:CH466545
GO:GO:0042645 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
CTD:116447 eggNOG:COG3569 HOGENOM:HOG000105469 KO:K03163
OMA:PEADGCQ OrthoDB:EOG49S667 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596 SUPFAM:SSF56741
EMBL:AF362952 EMBL:AK147119 EMBL:BC138582 EMBL:BC138583
IPI:IPI00454114 RefSeq:NP_082680.1 UniGene:Mm.182401 HSSP:P11387
ProteinModelPortal:Q8R4U6 SMR:Q8R4U6 PhosphoSite:Q8R4U6
PaxDb:Q8R4U6 PRIDE:Q8R4U6 Ensembl:ENSMUST00000000958 GeneID:72960
KEGG:mmu:72960 UCSC:uc007whb.1 GeneTree:ENSGT00390000016347
InParanoid:Q8R4U6 NextBio:337229 Bgee:Q8R4U6 Genevestigator:Q8R4U6
Uniprot:Q8R4U6
Length = 593
Score = 1492 (530.3 bits), Expect = 5.8e-153, P = 5.8e-153
Identities = 288/488 (59%), Positives = 354/488 (72%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KLS AEE+ATFY +M+ E T+KE F NF DWRK MT +ER +IT L KCDF
Sbjct: 73 GKPLKLSLAAEEVATFYGKMLHLECTSKEVFRRNFFSDWRKEMTPEERRLITHLDKCDFT 132
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++H +F++++ + +E+G C +DGH+EKIGNF+ EPPGLFRG
Sbjct: 133 EIHKHFLERAEARRTLPREQKQKLKEEAEKLQQEFGYCVLDGHREKIGNFKTEPPGLFRG 192
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMG LKRRV ED++INCS+DSK+P PP GH+WKEVR DN V WLA+W E++Q
Sbjct: 193 RGDHPKMGMLKRRVMPEDVVINCSRDSKIPEPPAGHQWKEVRSDNTVMWLAAWVEHIQNS 252
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
KY++LNPSSK KGE DWQKYE AR+L ++KIR YQADWKS EM+ RQ AVALYFID
Sbjct: 253 FKYVILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSPEMKKRQLAVALYFID 312
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALR GNEK+E + ADTVGCCSLRVEHI+LH G+ +VV DFLGKDSIRY N V V
Sbjct: 313 KLALRTGNEKEEGETADTVGCCSLRVEHIRLHAPAGGQEHVVELDFLGKDSIRYKNHVTV 372
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EK VF+NLQ F+E+K DDLFD L TS LNKHL +LMEGLTAKVFRTYNAS+TLQ+QL
Sbjct: 373 EKLVFQNLQHFMEDKDPRDDLFDALTTSSLNKHLQDLMEGLTAKVFRTYNASVTLQEQLR 432
Query: 364 ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE- 422
L + S K+LAYNRANRAVAVLCNHQR+VPK+ +KSM L++KI K+ QV +A+
Sbjct: 433 VLTRAEDSVTCKVLAYNRANRAVAVLCNHQRAVPKTFEKSMQTLQKKIETKKAQVAEAQV 492
Query: 423 ---RALKDAKKAGESKAMTD-KKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYL 478
+A D + G+SK + +K+ L + TDKEENK +ALGT+KLNYL
Sbjct: 493 ELQKAETDLRMRGDSKPKSFLQKQRRLLKLEEQLARLCAKATDKEENKQVALGTAKLNYL 552
Query: 479 DPRISVTW 486
DPRIS+ W
Sbjct: 553 DPRISIAW 560
Score = 402 (146.6 bits), Expect = 1.1e-35, P = 1.1e-35
Identities = 75/107 (70%), Positives = 88/107 (82%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA+W E++Q KY++LNPSSK KGE DWQKYE AR+L ++KIR YQADWKS
Sbjct: 238 TVMWLAAWVEHIQNSFKYVILNPSSKPKGEMDWQKYEVARRLKGVVDKIRAQYQADWKSP 297
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLH 588
EM+ RQ AVALYFIDKLALR GNEK+E + ADTVGCCSLRVEHI+LH
Sbjct: 298 EMKKRQLAVALYFIDKLALRTGNEKEEGETADTVGCCSLRVEHIRLH 344
>ZFIN|ZDB-GENE-030131-5390 [details] [associations]
symbol:top1 "topoisomerase (DNA) I" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA] [GO:0005694
"chromosome" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 SMART:SM00435 ZFIN:ZDB-GENE-030131-5390
GO:GO:0005694 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 SUPFAM:SSF56741
GeneTree:ENSGT00390000016347 EMBL:CU633907 EMBL:CU929044
IPI:IPI00899011 Ensembl:ENSDART00000133524 Uniprot:F1QTQ7
Length = 555
Score = 1411 (501.8 bits), Expect = 2.2e-144, P = 2.2e-144
Identities = 261/368 (70%), Positives = 300/368 (81%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G MKLS AEE+ATFYA+M+EHEYTT E F NF KDWRK MT +E++ IT+L KCDF
Sbjct: 151 GNAMKLSPAAEEVATFYAKMLEHEYTTNEIFRKNFFKDWRKEMTSEEKSKITELKKCDFT 210
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+MH YF +S I +EYG C +D H+E+IGNFRIEPPGLFRG
Sbjct: 211 QMHEYFKAQSEARKQMSKEEKQKNKEENERILQEYGFCLMDNHRERIGNFRIEPPGLFRG 270
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQ 184
RG+HPKMGKLKRR++ EDIIINCSKDS P PPG +WKEVRHDN+VTWL SWTEN+QG
Sbjct: 271 RGDHPKMGKLKRRIRPEDIIINCSKDSVQPKAPPGTRWKEVRHDNKVTWLVSWTENIQGS 330
Query: 185 VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
+KYIMLNPSS++KGEKDWQKYETAR+L K + +IR Y+ DW+SKEMRIRQRAVALYFID
Sbjct: 331 IKYIMLNPSSRIKGEKDWQKYETARRLKKCVERIRAQYREDWRSKEMRIRQRAVALYFID 390
Query: 245 KLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
KLALRAGNEKDE + ADTVGCCSLRVEHI+LH + DG+ YVV FDFLGKDSIRYYN++PV
Sbjct: 391 KLALRAGNEKDEGETADTVGCCSLRVEHIKLHPQLDGQDYVVEFDFLGKDSIRYYNKIPV 450
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
EKRVFKNLQLF+ENK+ DDLFDRLNTS+LNK+L ELM+GLTAKVFRTYNASITLQQQLN
Sbjct: 451 EKRVFKNLQLFLENKQSEDDLFDRLNTSILNKYLQELMDGLTAKVFRTYNASITLQQQLN 510
Query: 364 ELMDPDFS 371
EL + S
Sbjct: 511 ELTSRETS 518
Score = 472 (171.2 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 86/110 (78%), Positives = 98/110 (89%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWL SWTEN+QG +KYIMLNPSS++KGEKDWQKYETAR+L K + +IR Y+ DW+SKE
Sbjct: 317 VTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVERIRAQYREDWRSKE 376
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQ-ADTVGCCSLRVEHIQLHEEKD 592
MRIRQRAVALYFIDKLALRAGNEKDE + ADTVGCCSLRVEHI+LH + D
Sbjct: 377 MRIRQRAVALYFIDKLALRAGNEKDEGETADTVGCCSLRVEHIKLHPQLD 426
Score = 48 (22.0 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 18/68 (26%), Positives = 32/68 (47%)
Query: 196 LKGEKDWQKYETARKLAKSIN--KIRENYQADWKSK-EMRIRQRAVALYFIDKLALRAGN 252
LK E+D +YE K K N K+++ Q + S E R+ ++ +K G
Sbjct: 40 LKRERDEDEYEHKPKKVKVENEKKVKKRKQEEEDSDFEERVEKKPKKKIKEEKKDTTGGK 99
Query: 253 EKDEDQAD 260
+K ++Q +
Sbjct: 100 KKAKNQPE 107
>TAIR|locus:2173862 [details] [associations]
symbol:TOP1BETA "DNA topoisomerase 1 beta" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003917 "DNA topoisomerase type I activity"
evidence=IEA;ISS;IBA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA;IC;IBA] [GO:0031490
"chromatin DNA binding" evidence=IBA] [GO:0016020 "membrane"
evidence=IDA] [GO:0001676 "long-chain fatty acid metabolic process"
evidence=RCA] [GO:0002213 "defense response to insect"
evidence=RCA] [GO:0006633 "fatty acid biosynthetic process"
evidence=RCA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 EMBL:CP002688
GO:GO:0005694 GO:GO:0016020 GO:GO:0031490 GO:GO:0006265
EMBL:AB015479 SUPFAM:SSF56349 GO:GO:0003918 HOGENOM:HOG000105469
KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 HSSP:P11387 OMA:LGKNHII
ProtClustDB:CLSN2686978 EMBL:AK226832 IPI:IPI00524700
RefSeq:NP_200342.1 UniGene:At.6889 ProteinModelPortal:Q9FJ79
SMR:Q9FJ79 STRING:Q9FJ79 PRIDE:Q9FJ79 EnsemblPlants:AT5G55310.1
GeneID:835624 KEGG:ath:AT5G55310 TAIR:At5g55310 InParanoid:Q9FJ79
PhylomeDB:Q9FJ79 Genevestigator:Q9FJ79 Uniprot:Q9FJ79
Length = 917
Score = 1070 (381.7 bits), Expect = 1.2e-114, Sum P(3) = 1.2e-114
Identities = 233/496 (46%), Positives = 306/496 (61%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ + EE+AT +A M E EY K F NF DWRK + + +I L CDF
Sbjct: 394 GKPVDLTPEQEEVATMFAVMRETEYYKKPKFRENFWNDWRKLLGKNH--MIKSLDDCDFT 451
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ +++Q+ ++Y +DG +E+IGNFR+EPPGLFRG
Sbjct: 452 PIYEWYMQEKETKKQMTAEEKRIVKEEKLKQEEKYMWAVLDGVRERIGNFRVEPPGLFRG 511
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMGKLK+R++ DI IN K++ +P P PG +WKEV+HDN VTWLA W++ +
Sbjct: 512 RGEHPKMGKLKKRIRPCDITINIGKEAPIPECPIPGERWKEVKHDNTVTWLAFWSDPINP 571
Query: 184 -QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L SS LKG+ D +KYE ARKL I IR Y D+ +K++ RQ AVA Y
Sbjct: 572 KEFKYVFLAASSSLKGQSDKEKYEKARKLHNHIGSIRAAYTKDFNNKDVTKRQIAVATYL 631
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKD+D+ADTVGCC+L+V +++ P + FDFLGKDSI+Y N V
Sbjct: 632 IDKLALRAGNEKDDDEADTVGCCTLKVGNVECIP-----PNKLKFDFLGKDSIQYVNTVE 686
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+K + F K +DDLFD L+TS LN HL ELM GLTAKVFRTYNASITL L
Sbjct: 687 VEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNTHLKELMAGLTAKVFRTYNASITLDLML 746
Query: 363 N-ELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDA 421
+ E D D E K++ Y +AN+ VA++CNHQR+V KSH + L KI R+Q+K+
Sbjct: 747 SKETRDGDVPE--KVVVYQQANKEVAIICNHQRTVSKSHGAQVEKLAVKIEELREQIKEL 804
Query: 422 ERALKDAKKAGESKAM-TD-KKKTALG------RXXXXXXXXXXXXTD---KEENKTIAL 470
L AKK G + M +D K+K L + D KE+ KT+AL
Sbjct: 805 NIDLDRAKK-GRTPLMGSDGKRKRNLTPEALEKKIMQTQGKIEKMERDMQTKEDMKTVAL 863
Query: 471 GTSKLNYLDPRISVTW 486
GTSK+NY+DPRI+V W
Sbjct: 864 GTSKINYMDPRITVAW 879
Score = 293 (108.2 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 57/105 (54%), Positives = 76/105 (72%)
Query: 483 SVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W++ + + KY+ L SS LKG+ D +KYE ARKL I IR Y D+ +
Sbjct: 558 TVTWLAFWSDPINPKEFKYVFLAASSSLKGQSDKEKYEKARKLHNHIGSIRAAYTKDFNN 617
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQ 586
K++ RQ AVA Y IDKLALRAGNEKD+D+ADTVGCC+L+V +++
Sbjct: 618 KDVTKRQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVGNVE 662
Score = 58 (25.5 bits), Expect = 1.2e-114, Sum P(3) = 1.2e-114
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 594 KKIYNKTQRAKFRWAIDM 611
+KI+NK+ AKF WA+D+
Sbjct: 888 EKIFNKSLLAKFAWAMDV 905
Score = 38 (18.4 bits), Expect = 3.3e-23, Sum P(3) = 3.3e-23
Identities = 15/79 (18%), Positives = 32/79 (40%)
Query: 182 QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS-KEMRIRQRAVAL 240
+G + + + + +G D+ K + + A + ++ S K + I Q+ +
Sbjct: 157 RGSTQQAVQKSNMRPQGLSDYTKKKVLDERAPMSSTVQTKTSVGTSSSKPVHIEQKRPLV 216
Query: 241 YFIDKLALRAGNEKDEDQA 259
ID+ L+ E QA
Sbjct: 217 NNIDRNGLKPKTEGHSSQA 235
Score = 37 (18.1 bits), Expect = 1.2e-114, Sum P(3) = 1.2e-114
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 499 KYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENY 535
K IM K E+D Q E + +A +KI NY
Sbjct: 836 KKIMQTQGKIEKMERDMQTKEDMKTVALGTSKI--NY 870
>UNIPROTKB|Q84ZL5 [details] [associations]
symbol:OJ1066_B03.125 "Os08g0154600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006338 "chromatin
remodeling" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0031298 "replication fork protection complex"
evidence=IBA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0007059
GO:GO:0005730 GO:GO:0016020 GO:GO:0006260 GO:GO:0009793
GO:GO:0006338 GO:GO:0009965 EMBL:AP008214 GO:GO:0048645
GO:GO:0009933 GO:GO:0019827 GO:GO:0010075 EMBL:CM000145
GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
GO:GO:0048439 eggNOG:COG3569 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF56741
HSSP:P11387 ProtClustDB:CLSN2686978 EMBL:AP003940
RefSeq:NP_001061015.1 UniGene:Os.21861
EnsemblPlants:LOC_Os08g05840.1 GeneID:4344685 KEGG:osa:4344685
Uniprot:Q84ZL5
Length = 916
Score = 1081 (385.6 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
Identities = 228/494 (46%), Positives = 304/494 (61%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ + L+ + EE+AT +A M + +Y +K+ F NF DWRK + + VI CDF
Sbjct: 399 GQPVDLTPEQEEVATMFAVMKDTDYASKQTFIDNFFTDWRKILGKNH--VIKKFELCDFT 456
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + +++ ++Y +DG KEK+GNFR+EPPGLFRG
Sbjct: 457 PIYEWHLREKEKKKQMTSEEKKALKEEKLKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRG 516
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENV-Q 182
RGEHPKMGKLKRR++ DI IN K + +P P PG WKEV+HDN VTWLA W + + Q
Sbjct: 517 RGEHPKMGKLKRRIKPSDITINIGKGAPIPECPIPGESWKEVKHDNTVTWLAFWNDPISQ 576
Query: 183 GQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
KY+ L SS LKG+ D +KYE +RKL ++KIR+ Y D++SK+ +Q AVA Y
Sbjct: 577 KDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYL 636
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAGNEKDED+A+TVGCC+L+V+++ P + FDFLGKDSIRY+N V
Sbjct: 637 IDKLALRAGNEKDEDEAETVGCCTLKVDNVTCVP-----PNKLQFDFLGKDSIRYFNTVE 691
Query: 303 VEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
VE V+K ++ F KK DLFD+L+T+ LN HL +LM GLTAKVFRTYNASITL L
Sbjct: 692 VELLVYKAIEEFRAGKKPGQDLFDKLDTTRLNAHLKDLMPGLTAKVFRTYNASITLDDIL 751
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN---KRKQVK 419
++ + D + EKI Y RAN+ VA++CNHQRSV KSHD M L EKI +R ++K
Sbjct: 752 HKETE-DGTLLEKIAVYQRANKEVAIICNHQRSVSKSHDSQMTRLNEKIDELKAQRDELK 810
Query: 420 DAERALKDAKKAGESKAMTDKKKTA-------LGRXXXXXXXXXXXXTDKEENKTIALGT 472
++ K G K K+ A + + KE+ KT+ALGT
Sbjct: 811 ADLSKVRKGKNLGNDKDGKPKRNLAPEAFEKKISQIETKIEKMEMDKKIKEDLKTVALGT 870
Query: 473 SKLNYLDPRISVTW 486
SK+NYLDPRI+V W
Sbjct: 871 SKINYLDPRITVAW 884
Score = 302 (111.4 bits), Expect = 7.2e-25, Sum P(3) = 7.2e-25
Identities = 57/104 (54%), Positives = 78/104 (75%)
Query: 483 SVTWLASWTENV-QGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + Q KY+ L SS LKG+ D +KYE +RKL ++KIR+ Y D++S
Sbjct: 563 TVTWLAFWNDPISQKDFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRS 622
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHI 585
K+ +Q AVA Y IDKLALRAGNEKDED+A+TVGCC+L+V+++
Sbjct: 623 KDKTKKQIAVATYLIDKLALRAGNEKDEDEAETVGCCTLKVDNV 666
Score = 63 (27.2 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 588 HEEKDEKKIYNKTQRAKFRWAIDMATADFVF 618
HE EK I+NK+ AKF WA+D+ DF F
Sbjct: 888 HEVPIEK-IFNKSLIAKFSWAMDV-DPDFRF 916
Score = 39 (18.8 bits), Expect = 7.2e-25, Sum P(3) = 7.2e-25
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 402 KSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDK 440
K GN IS+ + +V A + K + A T +
Sbjct: 226 KVTGNASASISSSKDKVLSASIKASSSSKMSNNDASTSR 264
Score = 39 (18.8 bits), Expect = 7.2e-25, Sum P(3) = 7.2e-25
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 395 SVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDK 440
+VP S MG + + VK + +LK K + K T K
Sbjct: 306 NVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMKMKMKTKK 351
>UNIPROTKB|E5RIC7 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
SMART:SM00435 GO:GO:0005739 GO:GO:0005694 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 EMBL:AC087793 HGNC:HGNC:29787
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:2.170.11.10
Gene3D:3.90.15.10 SUPFAM:SSF56741 IPI:IPI00974556
ProteinModelPortal:E5RIC7 SMR:E5RIC7 Ensembl:ENST00000519139
UCSC:uc010mfd.1 ArrayExpress:E5RIC7 Bgee:E5RIC7 Uniprot:E5RIC7
Length = 328
Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
Identities = 200/306 (65%), Positives = 237/306 (77%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSXXXXXXXXX 83
M++HEYTTKE F NF DWRK M +ER VI L KCDF ++H YFV K+
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 84 XXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
+ +E+G C +DGH+EKIGNF+IEPPGLFRGRG+HPKMG LKRR+ ED+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ 203
+INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ +KYIMLNP SKLKGE WQ
Sbjct: 121 VINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQ 180
Query: 204 KYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQA-DTV 262
K+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFIDKLALRAGNEK++ +A DTV
Sbjct: 181 KFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFIDKLALRAGNEKEDGEAADTV 240
Query: 263 GCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSD 322
GCCSLRVEH+QLH E DG +VV FDFLGKD IRYYN VPVEK V+KNLQLF+ENK D
Sbjct: 241 GCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRD 300
Query: 323 DLFDRL 328
DLFDRL
Sbjct: 301 DLFDRL 306
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 80/111 (72%), Positives = 96/111 (86%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 147 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 206
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQA-DTVGCCSLRVEHIQLHEEKD 592
EM+ RQRAVALYFIDKLALRAGNEK++ +A DTVGCCSLRVEH+QLH E D
Sbjct: 207 EMKTRQRAVALYFIDKLALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEAD 257
>CGD|CAL0000708 [details] [associations]
symbol:TOP1 species:5476 "Candida albicans" [GO:0003917 "DNA
topoisomerase type I activity" evidence=IGI;ISS;IMP] [GO:0005634
"nucleus" evidence=ISS] [GO:0009405 "pathogenesis" evidence=IMP]
[GO:0030448 "hyphal growth" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031298 "replication fork protection complex"
evidence=IEA] [GO:0006333 "chromatin assembly or disassembly"
evidence=IEA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000019 "regulation of mitotic recombination"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0007097
"nuclear migration" evidence=IEA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 CGD:CAL0000708 GO:GO:0005634 GO:GO:0005694
GO:GO:0009405 GO:GO:0030448 GO:GO:0006265 EMBL:AACQ01000106
SUPFAM:SSF56349 GO:GO:0003918 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF56741
RefSeq:XP_714305.1 ProteinModelPortal:Q59XR0 SMR:Q59XR0
STRING:Q59XR0 GeneID:3644034 KEGG:cal:CaO19.96 Uniprot:Q59XR0
Length = 780
Score = 1006 (359.2 bits), Expect = 3.4e-111, Sum P(2) = 3.4e-111
Identities = 196/409 (47%), Positives = 268/409 (65%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERA--VITDLSKCDF 63
K + L +AEE+A FY M+E ++ F NF D+ + + E I K DF
Sbjct: 187 KPVNLPPEAEEVAGFYGAMLETDHAKNPVFQKNFFNDFLEVLKECGGCGVEIKKFEKLDF 246
Query: 64 RKMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
KM+A+F + + Y C ++G KE +GNFRIEPPGLFR
Sbjct: 247 SKMYAHFEKLREEKKAMSREEKKRIKEEKEKEEEPYRTCYLNGRKELVGNFRIEPPGLFR 306
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPK GKLKRRV E + +N KD+K+P PP GH+W E+RHDN+VTWLA W EN+
Sbjct: 307 GRGAHPKTGKLKRRVVPEQVTLNLGKDAKIPEPPAGHQWGEIRHDNEVTWLAMWKENISD 366
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
+KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++M+ RQ A A+Y I
Sbjct: 367 SLKYVRFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLI 426
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y EV V
Sbjct: 427 DVFALRAGGEKGEDEADTVGCCSLRYEHVTLKP-----PNKVIFDFLGKDSIRFYQEVEV 481
Query: 304 EKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
+K+VFKNL++F ++ K+ DDLFDR+N S++N+ L M+GLTAKVFRTYNAS T+Q Q+
Sbjct: 482 DKQVFKNLRIFKKSPKQPGDDLFDRINPSLVNRQLQNYMKGLTAKVFRTYNASKTMQDQI 541
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
++++ + + AEK+ +N ANR VA+LCNHQR+V K+H S+ + +K+
Sbjct: 542 -DIIENEGTVAEKVAKFNAANRTVAILCNHQRTVSKTHGDSVQRINDKL 589
Score = 303 (111.7 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 56/104 (53%), Positives = 75/104 (72%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ +KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++
Sbjct: 354 VTWLAMWKENISDSLKYVRFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEK 413
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A+Y ID ALRAG EK ED+ADTVGCCSLR EH+ L
Sbjct: 414 MQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSLRYEHVTL 457
Score = 112 (44.5 bits), Expect = 3.4e-111, Sum P(2) = 3.4e-111
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 406 NLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEEN 465
++K+K+ + K+ ++ LK K A +K K + DKE+N
Sbjct: 667 DIKDKLDKIDELEKEYQKELKTGKPIVTKNATVEKLKQQIETLENKILNVSIQLKDKEDN 726
Query: 466 KTIALGTSKLNYLDPRISV 484
++LGTSK+NY+DPR+ V
Sbjct: 727 SEVSLGTSKMNYIDPRLIV 745
Score = 74 (31.1 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 408 KEKISNKR--KQVKDAERALKDAKKAGESKAMTDKKKTALGRXXXXXXXXXXXXTDK--E 463
K K+SN R KQVK + K+ K A +SK+ T KK T + + + K E
Sbjct: 61 KRKLSNGRAKKQVKTETKVKKEPKSANKSKS-TSKKDTKVKKEKTTVKKESKATSTKVKE 119
Query: 464 ENKT 467
E+KT
Sbjct: 120 ESKT 123
Score = 66 (28.3 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
Identities = 29/130 (22%), Positives = 61/130 (46%)
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVA------LYFID 557
N KL+G+ + + KL K I+++ + YQ + K+ + + + A + ++
Sbjct: 652 NEKLKLEGKPLLTESDIKDKLDK-IDELEKEYQKELKTGKPIVTKNATVEKLKQQIETLE 710
Query: 558 KLALRAGNE-KDEDQADTVGCCSLRVEHIQ-----LHEEKDE---KKIYNKTQRAKFRWA 608
L + KD++ V + ++ +I + +K + +K++ KT R KF WA
Sbjct: 711 NKILNVSIQLKDKEDNSEVSLGTSKMNYIDPRLIVMFSKKFDVPIEKLFTKTLREKFIWA 770
Query: 609 IDMATADFVF 618
I+ A ++ F
Sbjct: 771 IESADENWRF 780
>UNIPROTKB|Q59XR0 [details] [associations]
symbol:TOP1 "Likely DNA topoisomerase I" species:237561
"Candida albicans SC5314" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IGI;ISS;IMP] [GO:0005634 "nucleus" evidence=ISS]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0030448 "hyphal
growth" evidence=IMP] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 CGD:CAL0000708
GO:GO:0005634 GO:GO:0005694 GO:GO:0009405 GO:GO:0030448
GO:GO:0006265 EMBL:AACQ01000106 SUPFAM:SSF56349 GO:GO:0003918
KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 RefSeq:XP_714305.1
ProteinModelPortal:Q59XR0 SMR:Q59XR0 STRING:Q59XR0 GeneID:3644034
KEGG:cal:CaO19.96 Uniprot:Q59XR0
Length = 780
Score = 1006 (359.2 bits), Expect = 3.4e-111, Sum P(2) = 3.4e-111
Identities = 196/409 (47%), Positives = 268/409 (65%)
Query: 6 KEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERA--VITDLSKCDF 63
K + L +AEE+A FY M+E ++ F NF D+ + + E I K DF
Sbjct: 187 KPVNLPPEAEEVAGFYGAMLETDHAKNPVFQKNFFNDFLEVLKECGGCGVEIKKFEKLDF 246
Query: 64 RKMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
KM+A+F + + Y C ++G KE +GNFRIEPPGLFR
Sbjct: 247 SKMYAHFEKLREEKKAMSREEKKRIKEEKEKEEEPYRTCYLNGRKELVGNFRIEPPGLFR 306
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPK GKLKRRV E + +N KD+K+P PP GH+W E+RHDN+VTWLA W EN+
Sbjct: 307 GRGAHPKTGKLKRRVVPEQVTLNLGKDAKIPEPPAGHQWGEIRHDNEVTWLAMWKENISD 366
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
+KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++M+ RQ A A+Y I
Sbjct: 367 SLKYVRFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLI 426
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y EV V
Sbjct: 427 DVFALRAGGEKGEDEADTVGCCSLRYEHVTLKP-----PNKVIFDFLGKDSIRFYQEVEV 481
Query: 304 EKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
+K+VFKNL++F ++ K+ DDLFDR+N S++N+ L M+GLTAKVFRTYNAS T+Q Q+
Sbjct: 482 DKQVFKNLRIFKKSPKQPGDDLFDRINPSLVNRQLQNYMKGLTAKVFRTYNASKTMQDQI 541
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKI 411
++++ + + AEK+ +N ANR VA+LCNHQR+V K+H S+ + +K+
Sbjct: 542 -DIIENEGTVAEKVAKFNAANRTVAILCNHQRTVSKTHGDSVQRINDKL 589
Score = 303 (111.7 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 56/104 (53%), Positives = 75/104 (72%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA W EN+ +KY+ +S +KG+ D++K+ETARKL ++ IR++Y KS++
Sbjct: 354 VTWLAMWKENISDSLKYVRFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEK 413
Query: 544 MRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M+ RQ A A+Y ID ALRAG EK ED+ADTVGCCSLR EH+ L
Sbjct: 414 MQDRQMATAMYLIDVFALRAGGEKGEDEADTVGCCSLRYEHVTL 457
Score = 112 (44.5 bits), Expect = 3.4e-111, Sum P(2) = 3.4e-111
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 406 NLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEEN 465
++K+K+ + K+ ++ LK K A +K K + DKE+N
Sbjct: 667 DIKDKLDKIDELEKEYQKELKTGKPIVTKNATVEKLKQQIETLENKILNVSIQLKDKEDN 726
Query: 466 KTIALGTSKLNYLDPRISV 484
++LGTSK+NY+DPR+ V
Sbjct: 727 SEVSLGTSKMNYIDPRLIV 745
Score = 74 (31.1 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 23/64 (35%), Positives = 32/64 (50%)
Query: 408 KEKISNKR--KQVKDAERALKDAKKAGESKAMTDKKKTALGRXXXXXXXXXXXXTDK--E 463
K K+SN R KQVK + K+ K A +SK+ T KK T + + + K E
Sbjct: 61 KRKLSNGRAKKQVKTETKVKKEPKSANKSKS-TSKKDTKVKKEKTTVKKESKATSTKVKE 119
Query: 464 ENKT 467
E+KT
Sbjct: 120 ESKT 123
Score = 66 (28.3 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
Identities = 29/130 (22%), Positives = 61/130 (46%)
Query: 504 NPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVA------LYFID 557
N KL+G+ + + KL K I+++ + YQ + K+ + + + A + ++
Sbjct: 652 NEKLKLEGKPLLTESDIKDKLDK-IDELEKEYQKELKTGKPIVTKNATVEKLKQQIETLE 710
Query: 558 KLALRAGNE-KDEDQADTVGCCSLRVEHIQ-----LHEEKDE---KKIYNKTQRAKFRWA 608
L + KD++ V + ++ +I + +K + +K++ KT R KF WA
Sbjct: 711 NKILNVSIQLKDKEDNSEVSLGTSKMNYIDPRLIVMFSKKFDVPIEKLFTKTLREKFIWA 770
Query: 609 IDMATADFVF 618
I+ A ++ F
Sbjct: 771 IESADENWRF 780
>POMBASE|SPBC1703.14c [details] [associations]
symbol:top1 "DNA topoisomerase I" species:4896
"Schizosaccharomyces pombe" [GO:0000790 "nuclear chromatin"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003917
"DNA topoisomerase type I activity" evidence=ISO;IMP] [GO:0003918
"DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006265 "DNA topological
change" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IGI] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0007076 "mitotic chromosome condensation"
evidence=ISO] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IGI]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 PomBase:SPBC1703.14c GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0000790 GO:GO:0006333 GO:GO:0007076 GO:GO:0042790
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569
HOGENOM:HOG000105469 KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF56741 EMBL:X06201
PIR:S03329 PIR:T50327 RefSeq:NP_596209.1 ProteinModelPortal:P07799
SMR:P07799 STRING:P07799 EnsemblFungi:SPBC1703.14c.1 GeneID:2540032
KEGG:spo:SPBC1703.14c OMA:EQVGNFR OrthoDB:EOG4BK8C3
NextBio:20801174 Uniprot:P07799
Length = 814
Score = 1051 (375.0 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
Identities = 236/535 (44%), Positives = 312/535 (58%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKE-RAVITDLSKCDF 63
G + L +AEE+A FYA M+E ++ F NF +D+ K E I + SKCDF
Sbjct: 222 GNPVNLPPEAEEVAGFYAAMLETDHAKNPVFQDNFFRDFLKVCDECNFNHNIKEFSKCDF 281
Query: 64 RKMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFR 123
+M +F QK ++Y C +DG KEK+GNFRIEPPGLFR
Sbjct: 282 TQMFHHFEQKREEKKSMPKEQKKAIKQKKDEEEEKYKWCILDGRKEKVGNFRIEPPGLFR 341
Query: 124 GRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQG 183
GRG HPK G LKRRV E I IN + VP P PGH+W EV+HDN VTWLA+W EN+
Sbjct: 342 GRGSHPKTGSLKRRVYPEQITINIGEGVPVPEPLPGHQWAEVKHDNTVTWLATWHENINN 401
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
VKY+ L S LKG+ D +KYE +RKL I+ IR+ Y+ D KS+ RQR A+Y I
Sbjct: 402 NVKYVFLAAGSSLKGQSDLKKYEKSRKLKDYIDDIRKGYRKDLKSELTVERQRGTAMYLI 461
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D ALRAGNEK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIRYYNEV V
Sbjct: 462 DVFALRAGNEKGEDEADTVGCCSLRYEHVTLKP-----PRTVVFDFLGKDSIRYYNEVEV 516
Query: 304 EKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQL 362
+ +VFKNL++F KK D +FDRL+T+ LNK+L+ LM+GL+AKVFRTYNAS T+ ++L
Sbjct: 517 DPQVFKNLKIFKRPPKKEGDLIFDRLSTNSLNKYLTSLMDGLSAKVFRTYNASYTMAEEL 576
Query: 363 NELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
+ M + + A+KIL YNRANR VA+LCNHQRSV K+HD M E+I + Q
Sbjct: 577 KK-MPKNLTLADKILFYNRANRTVAILCNHQRSVTKNHDVQMERFAERIKALQYQRMRLR 635
Query: 423 RALKDAK-KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEE-NKTIALGTSKLNYLDP 480
+ + + + K +SK K+ + +KE+ K KL DP
Sbjct: 636 KMMLNLEPKLAKSKPELLAKEEGITDSWIVKHHETLYELEKEKIKKKFDRENEKLAAEDP 695
Query: 481 RISVTWLASWTENVQG--QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRE 533
+ SV + ++ ++K + ++LK +K + +L K +NK+ E
Sbjct: 696 K-SVLPESELEVRLKAADELKKAL---DAELKSKKVDPGRSSMEQLEKRLNKLNE 746
Score = 312 (114.9 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 60/105 (57%), Positives = 74/105 (70%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+W EN+ VKY+ L S LKG+ D +KYE +RKL I+ IR+ Y+ D KS+
Sbjct: 388 TVTWLATWHENINNNVKYVFLAAGSSLKGQSDLKKYEKSRKLKDYIDDIRKGYRKDLKSE 447
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQR A+Y ID ALRAGNEK ED+ADTVGCCSLR EH+ L
Sbjct: 448 LTVERQRGTAMYLIDVFALRAGNEKGEDEADTVGCCSLRYEHVTL 492
Score = 123 (48.4 bits), Expect = 0.00056, P = 0.00056
Identities = 38/117 (32%), Positives = 64/117 (54%)
Query: 372 EAEKILA-YNRANRAVAVLCNHQRSV-PKSHDKSMGNLKEKISNKRKQVKDAERALKDAK 429
E EKI ++R N +A +SV P+S + ++ K +++ K+ DAE LK +K
Sbjct: 675 EKEKIKKKFDRENEKLAA--EDPKSVLPESELE----VRLKAADELKKALDAE--LK-SK 725
Query: 430 KAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVTW 486
K ++ ++ + L + DK+ENKT ALGTSK+NY+DPR++ ++
Sbjct: 726 KVDPGRSSMEQLEKRLNKLNERINVMRTQMIDKDENKTTALGTSKINYIDPRLTYSF 782
Score = 59 (25.8 bits), Expect = 2.4e-110, Sum P(2) = 2.4e-110
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 566 EKDEDQADTVGCCSL-----RVEH-IQLHEEKDEKKIYNKTQRAKFRWAID 610
+KDE++ +G + R+ + E+ +K+++KT R KF WA D
Sbjct: 757 DKDENKTTALGTSKINYIDPRLTYSFSKREDVPIEKLFSKTIRDKFNWAAD 807
Score = 42 (19.8 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 21/81 (25%), Positives = 33/81 (40%)
Query: 358 LQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQ 417
L + LN+ + E + + RA+ N S K K MGN K K
Sbjct: 42 LSESLNKKSKSESDEDDIPIRKRRASSKK----NMSNSSSKKRAKVMGNGGLKNGKKTAV 97
Query: 418 VKDAERALKDAKKAGESKAMT 438
VK+ E + AK + + K ++
Sbjct: 98 VKEEEDFNEIAKPSPKHKRVS 118
>UNIPROTKB|A8IDM1 [details] [associations]
symbol:TOP1 "DNA topoisomerase I" species:3055
"Chlamydomonas reinhardtii" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006338 "chromatin
remodeling" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0031298 "replication fork protection complex"
evidence=IBA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0007059
GO:GO:0005730 GO:GO:0006260 GO:GO:0006338 GO:GO:0031298
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 eggNOG:COG3569
KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 EMBL:DS496116 RefSeq:XP_001703256.1
STRING:A8IDM1 EnsemblPlants:EDP05938 GeneID:5728813
KEGG:cre:CHLREDRAFT_114171 ProtClustDB:CLSN2686978
BioCyc:CHLAMY:CHLREDRAFT_114171-MONOMER Uniprot:A8IDM1
Length = 586
Score = 1016 (362.7 bits), Expect = 1.2e-106, Sum P(2) = 1.2e-106
Identities = 222/506 (43%), Positives = 302/506 (59%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ D EE+AT +A M E +Y K+ F NF + +++ + + VI DL KCDF
Sbjct: 56 GKPVDLTPDQEEVATMFAVMKETDYMNKKVFLDNFWEGFKEVLGKGH--VIKDLKKCDFT 113
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
++ + + + +Y V +DG E +GNFR+EPPGLFRG
Sbjct: 114 PIYDWHMAQREAKKGISKEEKDRIKKEKDEKEAKYKVAYVDGRPEPVGNFRVEPPGLFRG 173
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQG 183
RGEHPKMGK+K+RV DI IN ++ VP P PG WKEV+HD+ VTWLA W + +
Sbjct: 174 RGEHPKMGKIKKRVYPRDITINIGENEPVPEHPYPGQTWKEVKHDHTVTWLAYWKDTIST 233
Query: 184 Q-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYF 242
+ KY+ L +S K + D KYE ARKL + I +R+NY+ DW S + R RQ VA+YF
Sbjct: 234 KDYKYVFLGATSTFKADSDLAKYEKARKLKEIIVDVRKNYERDWDSSDQRKRQMGVAMYF 293
Query: 243 IDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVP 302
IDKLALRAG+EKDED+ADTVGCC+L+VE+I++ D K V FDFLGKDSIRY N V
Sbjct: 294 IDKLALRAGHEKDEDEADTVGCCTLKVENIEIMG--DNK---VKFDFLGKDSIRYENIVE 348
Query: 303 VEKRVFKNLQLFV------ENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASI 356
V+ RV+KNL+ F + K+ D LF+ + LNK L +M+GL+ KVFRTYNASI
Sbjct: 349 VDPRVYKNLEKFKRIDHTGKRKQQGDQLFETFDAQDLNKELKNIMDGLSVKVFRTYNASI 408
Query: 357 TLQQQLNE--LMDPDFSEAEKI----LAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
L + L+E S A+ + + Y+ AN+ VA+LCNHQRSVPK+H M ++EK
Sbjct: 409 VLDRLLSEWEATKKGHSTAQTVDQKKVDYDIANKEVAILCNHQRSVPKTHTNQMEKIQEK 468
Query: 411 ISNKRKQVKDAERALKDAKK--AGESKAMTDKKKTAL--------GRXXXXXXXXXXXXT 460
++ K++ + E L+ A+K A KA T L +
Sbjct: 469 LAGMNKELAELEDELRAAQKGKAENKKANKCGAPTILPWALNSKIDKKKQAIAKVELQAR 528
Query: 461 DKEENKTIALGTSKLNYLDPRISVTW 486
KE+ KT+ALGTSK+NY+DPRI+V W
Sbjct: 529 SKEDLKTVALGTSKINYMDPRITVAW 554
Score = 314 (115.6 bits), Expect = 5.1e-27, Sum P(2) = 5.1e-27
Identities = 58/106 (54%), Positives = 78/106 (73%)
Query: 483 SVTWLASWTENVQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKS 541
+VTWLA W + + + KY+ L +S K + D KYE ARKL + I +R+NY+ DW S
Sbjct: 220 TVTWLAYWKDTISTKDYKYVFLGATSTFKADSDLAKYEKARKLKEIIVDVRKNYERDWDS 279
Query: 542 KEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
+ R RQ VA+YFIDKLALRAG+EKDED+ADTVGCC+L+VE+I++
Sbjct: 280 SDQRKRQMGVAMYFIDKLALRAGHEKDEDEADTVGCCTLKVENIEI 325
Score = 59 (25.8 bits), Expect = 1.2e-106, Sum P(2) = 1.2e-106
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 594 KKIYNKTQRAKFRWAIDM 611
+KI+NK+ AKF WA+D+
Sbjct: 563 EKIFNKSLLAKFNWAMDV 580
>DICTYBASE|DDB_G0283205 [details] [associations]
symbol:top1 "DNA topoisomerase I" species:44689
"Dictyostelium discoideum" [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA;ISS;IBA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0006265 "DNA topological change"
evidence=IEA;ISS;IBA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0006260 "DNA
replication" evidence=ISS;IBA] [GO:0031298 "replication fork
protection complex" evidence=IBA] [GO:0007059 "chromosome
segregation" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003916 "DNA topoisomerase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 dictyBase:DDB_G0283205 GO:GO:0005524 GO:GO:0007059
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0006260 GO:GO:0006338
EMBL:AAFI02000051 GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349
GO:GO:0003918 eggNOG:COG3569 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF56741
HSSP:P11387 RefSeq:XP_639222.1 ProteinModelPortal:Q54RC3 SMR:Q54RC3
STRING:Q54RC3 EnsemblProtists:DDB0234191 GeneID:8623995
KEGG:ddi:DDB_G0283205 OMA:EHQAFLV Uniprot:Q54RC3
Length = 893
Score = 1021 (364.5 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
Identities = 207/465 (44%), Positives = 283/465 (60%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK +KL+ EE+ATFYA +E ++ K+AF NF K+++ +T +++ ++ + KCDF
Sbjct: 337 GKVVKLTPKQEEVATFYANYLETDHVKKQAFKDNFFKEFKGLLTSEQKEIVKKMDKCDFS 396
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+H + K I +++G TIDG KEK+GN+ IEPPGLF G
Sbjct: 397 HIHTHLKTKKEQRKARSKEEKDAETAEKKKIQEKHGFATIDGFKEKVGNYMIEPPGLFLG 456
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPP-PGHKWKEVRHDNQVTWLASWTENVQG 183
RG+HPK G LK+R+ D+ +N + +PP P PG KWKE+ H+N VTWLA W E+V G
Sbjct: 457 RGQHPKTGMLKQRIMPSDVTLNIGEGEVIPPSPIPGEKWKEIVHNNTVTWLAFWRESVNG 516
Query: 184 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFI 243
KY+ L PSSK+KG+ D +K+E AR L I IR+ YQ + + RQ AVALY I
Sbjct: 517 GFKYVWLAPSSKIKGQADRKKFEVARGLKNCIGDIRKGYQKSFNDESTEKRQLAVALYLI 576
Query: 244 DKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPV 303
D LALR GNEK EDQADTVGCCSLRVEHI+L + DFLGKDS+RY N V +
Sbjct: 577 DFLALRVGNEKGEDQADTVGCCSLRVEHIKLESNN-----TITLDFLGKDSMRYLNTVQI 631
Query: 304 EKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQQQLN 363
+ +K L+ FV+ KK +D LFD L + LN HL + M GL+AKVFRTYNASITLQ++L+
Sbjct: 632 REDAYKVLKTFVKGKKPTDLLFDSLTVTQLNNHLKKQMTGLSAKVFRTYNASITLQKELD 691
Query: 364 ELMDPDFSEA-EKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAE 422
++ +F EKIL YNR NR VA+LCNHQ++ PK+ ++M + EKI R ++D
Sbjct: 692 KMDTKEFQSIDEKILFYNRCNREVAILCNHQKAPPKNLAETMSKIDEKIQELR-DLQDLC 750
Query: 423 RALKDAKKAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKT 467
R +K K + + ++ R DK++ KT
Sbjct: 751 R-IKIGKTPKSQQEDIESREAE--RLPKLIQLAITNKKDKDKEKT 792
Score = 322 (118.4 bits), Expect = 3.9e-26, Sum P(3) = 3.9e-26
Identities = 64/105 (60%), Positives = 75/105 (71%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA W E+V G KY+ L PSSK+KG+ D +K+E AR L I IR+ YQ + +
Sbjct: 503 TVTWLAFWRESVNGGFKYVWLAPSSKIKGQADRKKFEVARGLKNCIGDIRKGYQKSFNDE 562
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ AVALY ID LALR GNEK EDQADTVGCCSLRVEHI+L
Sbjct: 563 STEKRQLAVALYLIDFLALRVGNEKGEDQADTVGCCSLRVEHIKL 607
Score = 127 (49.8 bits), Expect = 8.3e-05, Sum P(2) = 8.3e-05
Identities = 32/93 (34%), Positives = 50/93 (53%)
Query: 396 VPKSHDKSMGNLKEKISNKR-KQVK-DAERALKDAKKAGESKAMTDKKKTALGRXXXXXX 453
+PK ++ N K+K K K++ D + A + ++ ++K K K + +
Sbjct: 773 LPKLIQLAITNKKDKDKEKTDKEISFDVKAAFEKSRTLPDAKG---KIKEKIAKYEEQIK 829
Query: 454 XXXXXXTDKEENKTIALGTSKLNYLDPRISVTW 486
T K+E KT+ALGTSK+NYLDPRI+V W
Sbjct: 830 KQEILKTGKDELKTVALGTSKINYLDPRITVAW 862
Score = 52 (23.4 bits), Expect = 1.9e-106, Sum P(2) = 1.9e-106
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 595 KIYNKTQRAKFRWAIDMATADFVF 618
KI+ K+ R KF W+ D+ T D++F
Sbjct: 872 KIFTKSLRDKFPWS-DVGT-DYIF 893
Score = 39 (18.8 bits), Expect = 3.9e-26, Sum P(3) = 3.9e-26
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 407 LKEKISNKRKQVKDAERALK--DAKKAGESKAMTDKKKT 443
+K+++ K++ + +K ++ GE + T KKKT
Sbjct: 237 VKKEVEVKKETKTTTTKKVKKEESDDDGEDEKTTTKKKT 275
>UNIPROTKB|Q75CB7 [details] [associations]
symbol:AGOS_ACL008C "ACL008Cp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006338 "chromatin
remodeling" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0031298 "replication fork protection complex"
evidence=IBA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 GO:GO:0007059
GO:GO:0005730 GO:GO:0006260 GO:GO:0006338 GO:GO:0031298
EMBL:AE016816 GenomeReviews:AE016816_GR GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 HOGENOM:HOG000105469 KO:K03163
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 OrthoDB:EOG4BK8C3 RefSeq:NP_983396.2
STRING:Q75CB7 EnsemblFungi:AAS51220 GeneID:4619521
KEGG:ago:AGOS_ACL008C Uniprot:Q75CB7
Length = 732
Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
Identities = 236/552 (42%), Positives = 317/552 (57%)
Query: 4 GGKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLS 59
GGK ++L +AEE+A F+A +++ ++ F NF +D+ + + A I + S
Sbjct: 134 GGKAVELPAEAEEVAGFFAALLQSDHAQNPVFQKNFFEDFLSVLNKHGGARNGIDIQEFS 193
Query: 60 KCDFRKMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPP 119
KCDF KMHAY Q+ + Y C +DG KE++GNF+IEPP
Sbjct: 194 KCDFSKMHAYIQQQKDQKKQLSSHEKKLLKQEKDKQEEPYKFCYLDGRKEQVGNFKIEPP 253
Query: 120 GLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTE 179
LFRGRG HPK GKLKRRVQ ED+++N KD+ +P PP GHKW E+RHDN V WL W E
Sbjct: 254 DLFRGRGAHPKTGKLKRRVQPEDVVLNLDKDAPIPEPPAGHKWGEIRHDNTVQWLCMWRE 313
Query: 180 NVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVA 239
N+ KY+ L +S LKG D++K+E +R+L I+ IR +Y+ + KSK M RQ AVA
Sbjct: 314 NISNSFKYVRLAANSSLKGMSDFKKFEKSRELKNYIDIIRADYRKNLKSKVMLDRQIAVA 373
Query: 240 LYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYN 299
Y ID ALRAG EK ED+ADTVGCCSLR EHI L P V FDFLGKDSIRYY
Sbjct: 374 TYLIDVFALRAGGEKSEDEADTVGCCSLRYEHISLKP-----PNTVVFDFLGKDSIRYYQ 428
Query: 300 EVPVEKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITL 358
EV V+K+VFKNL +F K+ LFDRL+ S+LNKHL M GLTAKVFRTYNAS T+
Sbjct: 429 EVEVDKQVFKNLSIFKRPPKEPGHQLFDRLDPSILNKHLQNYMPGLTAKVFRTYNASKTM 488
Query: 359 QQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQV 418
Q QL +L+ + S EK++ YN ANRAVA+LCNHQR+V +SH +SM EKI + Q
Sbjct: 489 QDQL-DLIPNEGSVTEKMVRYNAANRAVAILCNHQRTVGRSHAQSMQKATEKIEEYQWQK 547
Query: 419 KDAERALKDAKKAGESKAMTD--KKKTALGRXXXXXXXXXXXXTDKEE-NKTIALGTSKL 475
++A+ ++ E KA K+ L + ++E+ K A K
Sbjct: 548 IRYKKAILQLDES-ELKANPKFFKEINDLTKEEQMSIHKRVLEREREKYQKKFARENEKR 606
Query: 476 NYL-DPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIREN 534
+ + + + L SW +V+ K + + L K ++ KL I+K+ +
Sbjct: 607 KFEGEELLPESQLESWLADVEEMGKEYVEELETGLVTVKP--TLQSVEKLKAQIDKLEQR 664
Query: 535 YQA---DWKSKE 543
+ K KE
Sbjct: 665 IRTTSIQMKDKE 676
Score = 286 (105.7 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 57/105 (54%), Positives = 71/105 (67%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WL W EN+ KY+ L +S LKG D++K+E +R+L I+ IR +Y+ + KSK
Sbjct: 304 TVQWLCMWRENISNSFKYVRLAANSSLKGMSDFKKFEKSRELKNYIDIIRADYRKNLKSK 363
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M RQ AVA Y ID ALRAG EK ED+ADTVGCCSLR EHI L
Sbjct: 364 VMLDRQIAVATYLIDVFALRAGGEKSEDEADTVGCCSLRYEHISL 408
Score = 59 (25.8 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 19/74 (25%), Positives = 31/74 (41%)
Query: 369 DFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDA 428
D S ++ L N +A +R K + S G +E +S + K+ K + A
Sbjct: 8 DSSSEDEPLG-NGGRKAARPARGSKRRAVKEEESSSGEQEEVLSQEVKKRKTVSKRRAPA 66
Query: 429 KKAGESKAMTDKKK 442
+K E + D KK
Sbjct: 67 RKVKEEEGDRDAKK 80
Score = 40 (19.1 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 253 EKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVE-KRVFKNL 311
E++E++ D+V +LR + E P V + GK ++ E+P E + V
Sbjct: 97 EREEEKDDSVKWVTLRHNGVMFPPEYTPLPSHVRLYYGGK-AV----ELPAEAEEVAGFF 151
Query: 312 QLFVENKKGSDDLFDRLN-----TSVLNKH 336
+++ + +F + N SVLNKH
Sbjct: 152 AALLQSDHAQNPVFQK-NFFEDFLSVLNKH 180
>UNIPROTKB|Q7S0F7 [details] [associations]
symbol:NCU09118 "DNA topoisomerase I" species:367110
"Neurospora crassa OR74A" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0006265 "DNA
topological change" evidence=IBA] [GO:0006338 "chromatin
remodeling" evidence=IBA] [GO:0007059 "chromosome segregation"
evidence=IBA] [GO:0031298 "replication fork protection complex"
evidence=IBA] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
SMART:SM00435 GO:GO:0007059 GO:GO:0005730 GO:GO:0006260
GO:GO:0006338 GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349
GO:GO:0003918 eggNOG:COG3569 HOGENOM:HOG000105469 KO:K03163
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 OrthoDB:EOG4BK8C3 EMBL:AABX02000029
RefSeq:XP_958033.2 UniGene:Ncr.25536 ProteinModelPortal:Q7S0F7
SMR:Q7S0F7 STRING:Q7S0F7 EnsemblFungi:EFNCRT00000006491
GeneID:3874180 KEGG:ncr:NCU09118 OMA:LGKNHII Uniprot:Q7S0F7
Length = 874
Score = 978 (349.3 bits), Expect = 5.6e-105, Sum P(3) = 5.6e-105
Identities = 202/424 (47%), Positives = 270/424 (63%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKE-AFNTNFMKDWRKSMT------EK--ERAVI 55
G ++L +AEE ATF+ M+ + F NF +D+++ + +K ++ I
Sbjct: 267 GTPVELDIEAEEAATFFGFMLNSTVNVENPTFQKNFFRDFKEILDRTGGAKDKNGKKVDI 326
Query: 56 TDLSKCDFRKMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFR 115
+ K DF ++ AY ++ Y C DG KEK+GN R
Sbjct: 327 KEFEKLDFSQLWAYKDAQTKAKNARSSAEKKAEKAERDKRDAPYLYCKWDGRKEKVGNPR 386
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLA 175
+E PGLFRGRG+HPK G +K+RV E I IN K++KVP PP GHKWK V+HDN+ TWLA
Sbjct: 387 VEIPGLFRGRGDHPKTGCIKKRVLPEQITINIGKEAKVPEPPAGHKWKAVQHDNKATWLA 446
Query: 176 SWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y D KS+ M RQ
Sbjct: 447 MWQENINGHYKYVMLAANSTVKGKADFKKFEKARELKKYIDRIRADYTKDLKSEVMADRQ 506
Query: 236 RAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDS 294
RA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E P V FDFLGKDS
Sbjct: 507 RATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLRE-----PNTVIFDFLGKDS 561
Query: 295 IRYYNEVPVEKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYN 353
IR+YNE V+++VFKNL++F + K+ DD+FDRL T+ LNKHLS M GLTAKVFRTYN
Sbjct: 562 IRFYNEFTVDRQVFKNLKMFKKPPKEDGDDIFDRLTTTQLNKHLSSYMPGLTAKVFRTYN 621
Query: 354 ASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISN 413
AS T+ + L EL + + EK+ YN NR VA+LCNH+R+V SH++ M L E+I
Sbjct: 622 ASYTMSKLLQELKVTNATVHEKVKLYNDCNRQVAILCNHKRTVGASHEQQMKKLVEQIKG 681
Query: 414 KRKQ 417
R Q
Sbjct: 682 LRYQ 685
Score = 322 (118.4 bits), Expect = 6.5e-27, Sum P(3) = 6.5e-27
Identities = 61/106 (57%), Positives = 80/106 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I++IR +Y D KS+ M
Sbjct: 443 TWLAMWQENINGHYKYVMLAANSTVKGKADFKKFEKARELKKYIDRIRADYTKDLKSEVM 502
Query: 545 RIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHIQLHE 589
RQRA A+Y IDK ALRAGNEKD E++A+TVGCCSL+ EH+ L E
Sbjct: 503 ADRQRATAMYLIDKFALRAGNEKDTENEAETVGCCSLKYEHVTLRE 548
Score = 116 (45.9 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 41/176 (23%), Positives = 80/176 (45%)
Query: 335 KHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQR 394
K L E ++GL + +RT + L +L + + E ++ L L Q+
Sbjct: 673 KKLVEQIKGLRYQKWRTKMMMLDLDPKLKKKKGAAYFELDEDLTEEWVKSHQEFLVEDQK 732
Query: 395 S-----VPKSHDKSMGNLKEKI--SNKRKQVKDAERALKDAKKAGESKAM--------TD 439
+ K ++K + + ++ + S ++++K A KK ++K + +
Sbjct: 733 AKINKKFEKDNEKRIADGEKPLPASELKERLKAASELEAKFKKENKTKKVEAEGKGPSVE 792
Query: 440 KKKTALGRXXXXXXXXXXXXTDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQ 495
K + AL + D+E NK +ALGTSK+NY+DPR++V + A + ++
Sbjct: 793 KLEAALEKLDQRIKNLELQSADREGNKEVALGTSKINYIDPRLTVVFSAKFNVPIE 848
Score = 57 (25.1 bits), Expect = 5.6e-105, Sum P(3) = 5.6e-105
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 594 KKIYNKTQRAKFRWAIDMATAD 615
+K ++KT R KF+WAI+ D
Sbjct: 848 EKFFSKTLREKFKWAIESVGND 869
Score = 41 (19.5 bits), Expect = 6.5e-27, Sum P(3) = 6.5e-27
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 419 KDAERALKDAKKAGESKA 436
KDA+ K+A+ + E KA
Sbjct: 341 KDAQTKAKNARSSAEKKA 358
Score = 38 (18.4 bits), Expect = 5.6e-105, Sum P(3) = 5.6e-105
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 497 QVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQA-DWKSK 542
+ K +ML+ KLK +K +E L + K + + D K+K
Sbjct: 688 RTKMMMLDLDPKLKKKKGAAYFELDEDLTEEWVKSHQEFLVEDQKAK 734
>SGD|S000005366 [details] [associations]
symbol:TOP1 "Topoisomerase I" species:4932 "Saccharomyces
cerevisiae" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003917
"DNA topoisomerase type I activity" evidence=IEA;IMP;IDA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA;IMP;IDA] [GO:0031490
"chromatin DNA binding" evidence=IBA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003916 "DNA topoisomerase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IPI] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0000183 "chromatin silencing at
rDNA" evidence=IMP] [GO:0000019 "regulation of mitotic
recombination" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IGI;IMP] [GO:0007097 "nuclear migration"
evidence=IGI;IMP] [GO:0006333 "chromatin assembly or disassembly"
evidence=IMP] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0031298 "replication fork
protection complex" evidence=IDA] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=IMP] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR001631 InterPro:IPR008336
InterPro:IPR011010 InterPro:IPR013030 InterPro:IPR013034
InterPro:IPR013499 InterPro:IPR013500 InterPro:IPR014711
InterPro:IPR014727 InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919
PRINTS:PR00416 PROSITE:PS00176 SMART:SM00435 SGD:S000005366
GO:GO:0005524 GO:GO:0005654 GO:GO:0005730 EMBL:BK006948
GO:GO:0006357 GO:GO:0006333 GO:GO:0000183 GO:GO:0006368
GO:GO:0007076 GO:GO:0031490 GO:GO:0007097 GO:GO:0006271
GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
GO:GO:0000019 eggNOG:COG3569 HOGENOM:HOG000105469 KO:K03163
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 GeneTree:ENSGT00390000016347
OrthoDB:EOG4BK8C3 EMBL:K03077 EMBL:Z74748 PIR:A23161
RefSeq:NP_014637.1 PDB:1OIS PDBsum:1OIS ProteinModelPortal:P04786
SMR:P04786 DIP:DIP-1705N IntAct:P04786 MINT:MINT-386768
STRING:P04786 PaxDb:P04786 PeptideAtlas:P04786 EnsemblFungi:YOL006C
GeneID:854156 KEGG:sce:YOL006C CYGD:YOL006c OMA:HIDNIRT
ChEMBL:CHEMBL5948 EvolutionaryTrace:P04786 NextBio:975920
Genevestigator:P04786 GermOnline:YOL006C Uniprot:P04786
Length = 769
Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
Identities = 209/431 (48%), Positives = 269/431 (62%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAV----ITDLSK 60
GK + L AEE+A F+A ++E ++ F NF D+ + + E + I + S+
Sbjct: 172 GKPVDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSR 231
Query: 61 CDFRKMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPG 120
CDF KM YF + ++Y C +DG +E++GNF++EPP
Sbjct: 232 CDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPD 291
Query: 121 LFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTEN 180
LFRGRG HPK GKLKRRV EDI++N SKD+ VPP P GHKW E+RHDN V WLA W EN
Sbjct: 292 LFRGRGAHPKTGKLKRRVNPEDIVLNLSKDAPVPPAPEGHKWGEIRHDNTVQWLAMWREN 351
Query: 181 VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQRAVAL 240
+ KY+ L +S LKG+ D++K+E AR+L I+ IR +Y + KSK M RQ+AVA+
Sbjct: 352 IFNSFKYVRLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAI 411
Query: 241 YFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLGKDSIRYYNE 300
Y ID ALRAG EK ED+ADTVGCCSLR EH+ L P V FDFLGKDSIR+Y E
Sbjct: 412 YLIDVFALRAGGEKSEDEADTVGCCSLRYEHVTLKP-----PNTVIFDFLGKDSIRFYQE 466
Query: 301 VPVEKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFRTYNASITLQ 359
V V+K+VFKNL +F K+ LFDRL+ S+LNK+L M GLTAKVFRTYNAS T+Q
Sbjct: 467 VEVDKQVFKNLTIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQ 526
Query: 360 QQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVK 419
QL +L+ S AEKIL YN ANR VA+LCNHQR+V K H +++ +I Q
Sbjct: 527 DQL-DLIPNKGSVAEKILKYNAANRTVAILCNHQRTVTKGHAQTVEKANNRIQELEWQKI 585
Query: 420 DAERALKDAKK 430
+RA+ K
Sbjct: 586 RCKRAILQLDK 596
Score = 389 (142.0 bits), Expect = 1.9e-33, P = 1.9e-33
Identities = 120/348 (34%), Positives = 180/348 (51%)
Query: 282 PYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSEL 340
P V FDFLGKDSIR+Y EV V+K+VFKNL +F K+ LFDRL+ S+LNK+L
Sbjct: 448 PNTVIFDFLGKDSIRFYQEVEVDKQVFKNLTIFKRPPKQPGHQLFDRLDPSILNKYLQNY 507
Query: 341 MEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSH 400
M GLTAKVFRTYNAS T+Q QL +L+ S AEKIL YN ANR VA+LCNHQR+V K H
Sbjct: 508 MPGLTAKVFRTYNASKTMQDQL-DLIPNKGSVAEKILKYNAANRTVAILCNHQRTVTKGH 566
Query: 401 DKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRXXXXXXXXXXXXT 460
+++ EK +N+ +++ + +K +A+ K L +
Sbjct: 567 AQTV----EKANNRIQEL--------EWQKIRCKRAILQLDKDLLKKEPKYFEEIDDLT- 613
Query: 461 DKEENKTIALGTSKLNYLDPRISVTWLASWTENVQGQVKYIMLNPSSKLKGEKDW-QKY- 518
KE+ TI +D I EN + + + L P S+LK +W +K
Sbjct: 614 -KEDEATI-----HKRIIDREIEKYQRKFVRENDKRKFEKEELLPESQLK---EWLEKVD 664
Query: 519 ETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCC 578
E ++ K + ++ W S E +I+ + L ++ + KD+++ V
Sbjct: 665 EKKQEFEKELKTGEVELKSSWNSVE-KIKAQVEKLE--QRIQTSSIQLKDKEENSQVSLG 721
Query: 579 SLRVEHIQLH------EEKDE--KKIYNKTQRAKFRWAIDMATADFVF 618
+ ++ +I ++ D +KI+ KT R KF+WAI+ ++ F
Sbjct: 722 TSKINYIDPRLSVVFCKKYDVPIEKIFTKTLREKFKWAIESVDENWRF 769
Score = 302 (111.4 bits), Expect = 7.8e-24, Sum P(2) = 7.8e-24
Identities = 58/105 (55%), Positives = 74/105 (70%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+V WLA W EN+ KY+ L +S LKG+ D++K+E AR+L I+ IR +Y + KSK
Sbjct: 341 TVQWLAMWRENIFNSFKYVRLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSK 400
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
M RQ+AVA+Y ID ALRAG EK ED+ADTVGCCSLR EH+ L
Sbjct: 401 VMLERQKAVAIYLIDVFALRAGGEKSEDEADTVGCCSLRYEHVTL 445
Score = 48 (22.0 bits), Expect = 7.8e-24, Sum P(2) = 7.8e-24
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 395 SVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKK 442
S PK K G++K K + K +Q + E+ ++ ++ + KA ++++
Sbjct: 85 SKPKKIKKEDGDVKVKTTKKEEQ--ENEKKKREEEEEEDKKAKEEEEE 130
>ASPGD|ASPL0000055668 [details] [associations]
symbol:top1 species:162425 "Emericella nidulans"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IDA]
[GO:0006265 "DNA topological change" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0031298 "replication fork protection
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006268 "DNA unwinding involved in replication" evidence=IEA]
[GO:0003918 "DNA topoisomerase type II (ATP-hydrolyzing) activity"
evidence=IEA] [GO:0006333 "chromatin assembly or disassembly"
evidence=IEA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=IEA] [GO:0007076 "mitotic chromosome
condensation" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000019 "regulation of mitotic recombination"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0007097 "nuclear migration" evidence=IEA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 GO:GO:0007059 GO:GO:0005730 EMBL:BN001308
GO:GO:0006260 GO:GO:0006338 GO:GO:0031298 EMBL:AACD01000005
GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 HOGENOM:HOG000105469
KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 OrthoDB:EOG4BK8C3 RefSeq:XP_657857.1
ProteinModelPortal:Q5BGS7 SMR:Q5BGS7 STRING:Q5BGS7
EnsemblFungi:CADANIAT00002471 GeneID:2876031 KEGG:ani:AN0253.2
OMA:QGQVKYI Uniprot:Q5BGS7
Length = 871
Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
Identities = 235/568 (41%), Positives = 328/568 (57%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSMT-------EKER 52
M+ G + L +AEE+A F+ M+ ++T F NF D+++ + +K
Sbjct: 264 MKYDGIPVDLHPEAEEVAGFFGSMLNSTQHTENPTFQKNFFADFKEILKKTGGAKDQKGN 323
Query: 53 AV-ITDLSKCDFRKMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKI 111
V I + SKCDF+ + Y+ + A Y C DG K+K+
Sbjct: 324 KVDIKEFSKCDFQPIFQYYDAQRQEKKALPPAEKKRLKAEKDAQEAPYMYCMWDGRKQKV 383
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN K+++VPPPP GHKWKEV+HD +
Sbjct: 384 GNFRVEPPSLFRGRGEHPKTGRVKARVQPEQITINIGKEARVPPPPEGHKWKEVKHDQEG 443
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I +IR++YQ + K + M
Sbjct: 444 TWLAMWQENINGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIARIRKDYQKNLKHELM 503
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L P V FDFLG
Sbjct: 504 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLKP-----PNKVIFDFLG 558
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS+ M GLTAKVFR
Sbjct: 559 KDSIRFYDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSQYMPGLTAKVFR 618
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ + L M + AEK+ AYN ANR VA+LCNH+R+V +H M + E+
Sbjct: 619 TYNASHTMSELLKS-MHATGNNAEKVKAYNDANRKVAILCNHKRTVGAAHAHQMEKMSER 677
Query: 411 ISNKR------KQVK-DAERALKDAKKAG--ESKAMTDKK--KTALGRXXXXXXXXXXXX 459
I +R KQ+ D + +LK K A E DK+ K
Sbjct: 678 IKGQRYQKWRLKQMMLDLDPSLKKKKGAQFFELDEDIDKEWIKEHQAFLIEEQAQKIKKK 737
Query: 460 TDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKY 518
+K+ K +A G ++ + L + E V+ + K+ N + K++ E +
Sbjct: 738 FEKDNEKLLAEGEKEMKASE-------LETRLEAVKELEKKFNKENKTGKVEAEG---RS 787
Query: 519 ETARKLAKSINKIR---ENYQADWKSKE 543
T KL SI K++ EN + + KE
Sbjct: 788 PTVEKLEASITKLQQRIENMELQAQDKE 815
Score = 305 (112.4 bits), Expect = 5.1e-23, Sum P(2) = 5.1e-23
Identities = 56/103 (54%), Positives = 78/103 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I +IR++YQ + K + M
Sbjct: 444 TWLAMWQENINGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIARIRKDYQKNLKHELM 503
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L
Sbjct: 504 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTL 546
Score = 39 (18.8 bits), Expect = 5.1e-23, Sum P(2) = 5.1e-23
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 195 KLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
++KGEKD A K A S K + + S + ++Q
Sbjct: 148 QVKGEKDADPSAQATKSAASGKKQANGVKKEPASAKQTLKQ 188
>UNIPROTKB|Q5BGS7 [details] [associations]
symbol:AN0253.2 "Topoisomerase I
[Source:UniProtKB/TrEMBL;Acc:Q875K2]" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0031298 "replication fork protection complex" evidence=IBA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
InterPro:IPR018521 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
PROSITE:PS00176 SMART:SM00435 GO:GO:0007059 GO:GO:0005730
EMBL:BN001308 GO:GO:0006260 GO:GO:0006338 GO:GO:0031298
EMBL:AACD01000005 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918
HOGENOM:HOG000105469 KO:K03163 GO:GO:0003917 Gene3D:1.10.10.41
Gene3D:1.10.132.10 Gene3D:2.170.11.10 Gene3D:3.90.15.10
InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF56741 OrthoDB:EOG4BK8C3
RefSeq:XP_657857.1 ProteinModelPortal:Q5BGS7 SMR:Q5BGS7
STRING:Q5BGS7 EnsemblFungi:CADANIAT00002471 GeneID:2876031
KEGG:ani:AN0253.2 OMA:QGQVKYI Uniprot:Q5BGS7
Length = 871
Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
Identities = 235/568 (41%), Positives = 328/568 (57%)
Query: 1 MEAGGKEMKLSQDAEEIATFYARMIEH-EYTTKEAFNTNFMKDWRKSMT-------EKER 52
M+ G + L +AEE+A F+ M+ ++T F NF D+++ + +K
Sbjct: 264 MKYDGIPVDLHPEAEEVAGFFGSMLNSTQHTENPTFQKNFFADFKEILKKTGGAKDQKGN 323
Query: 53 AV-ITDLSKCDFRKMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKI 111
V I + SKCDF+ + Y+ + A Y C DG K+K+
Sbjct: 324 KVDIKEFSKCDFQPIFQYYDAQRQEKKALPPAEKKRLKAEKDAQEAPYMYCMWDGRKQKV 383
Query: 112 GNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVPPPPPGHKWKEVRHDNQV 171
GNFR+EPP LFRGRGEHPK G++K RVQ E I IN K+++VPPPP GHKWKEV+HD +
Sbjct: 384 GNFRVEPPSLFRGRGEHPKTGRVKARVQPEQITINIGKEARVPPPPEGHKWKEVKHDQEG 443
Query: 172 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 231
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I +IR++YQ + K + M
Sbjct: 444 TWLAMWQENINGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIARIRKDYQKNLKHELM 503
Query: 232 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDGKPYVVCFDFLG 291
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L P V FDFLG
Sbjct: 504 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTLKP-----PNKVIFDFLG 558
Query: 292 KDSIRYYNEVPVEKRVFKNLQLFVEN-KKGSDDLFDRLNTSVLNKHLSELMEGLTAKVFR 350
KDSIR+Y+EV V+ +VFKNL++F + KK D++FDRL TS LNKHLS+ M GLTAKVFR
Sbjct: 559 KDSIRFYDEVEVDPQVFKNLKIFKKPPKKEGDEIFDRLTTSALNKHLSQYMPGLTAKVFR 618
Query: 351 TYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEK 410
TYNAS T+ + L M + AEK+ AYN ANR VA+LCNH+R+V +H M + E+
Sbjct: 619 TYNASHTMSELLKS-MHATGNNAEKVKAYNDANRKVAILCNHKRTVGAAHAHQMEKMSER 677
Query: 411 ISNKR------KQVK-DAERALKDAKKAG--ESKAMTDKK--KTALGRXXXXXXXXXXXX 459
I +R KQ+ D + +LK K A E DK+ K
Sbjct: 678 IKGQRYQKWRLKQMMLDLDPSLKKKKGAQFFELDEDIDKEWIKEHQAFLIEEQAQKIKKK 737
Query: 460 TDKEENKTIALGTSKLNYLDPRISVTWLASWTENVQG-QVKYIMLNPSSKLKGEKDWQKY 518
+K+ K +A G ++ + L + E V+ + K+ N + K++ E +
Sbjct: 738 FEKDNEKLLAEGEKEMKASE-------LETRLEAVKELEKKFNKENKTGKVEAEG---RS 787
Query: 519 ETARKLAKSINKIR---ENYQADWKSKE 543
T KL SI K++ EN + + KE
Sbjct: 788 PTVEKLEASITKLQQRIENMELQAQDKE 815
Score = 305 (112.4 bits), Expect = 5.1e-23, Sum P(2) = 5.1e-23
Identities = 56/103 (54%), Positives = 78/103 (75%)
Query: 485 TWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM 544
TWLA W EN+ G KY+ML +S +KG+ D++K+E AR+L K I +IR++YQ + K + M
Sbjct: 444 TWLAMWQENINGNYKYVMLAANSDVKGQSDYKKFEKARELKKHIARIRKDYQKNLKHELM 503
Query: 545 RIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQL 587
RQ+A A+Y ID+ ALRAGNEK ED+A+TVGCCSL+ E++ L
Sbjct: 504 VERQKATAVYLIDQFALRAGNEKGEDEAETVGCCSLKYENVTL 546
Score = 39 (18.8 bits), Expect = 5.1e-23, Sum P(2) = 5.1e-23
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 195 KLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMRIRQ 235
++KGEKD A K A S K + + S + ++Q
Sbjct: 148 QVKGEKDADPSAQATKSAASGKKQANGVKKEPASAKQTLKQ 188
>UNIPROTKB|E5RFS0 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0003918 "DNA topoisomerase type II
(ATP-hydrolyzing) activity" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006265 "DNA topological change" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416
SMART:SM00435 GO:GO:0005739 GO:GO:0005694 GO:GO:0006265
SUPFAM:SSF56349 GO:GO:0003918 EMBL:AC087793 HGNC:HGNC:29787
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:2.170.11.10
Gene3D:3.90.15.10 SUPFAM:SSF56741 IPI:IPI00979115
ProteinModelPortal:E5RFS0 SMR:E5RFS0 Ensembl:ENST00000522041
ArrayExpress:E5RFS0 Bgee:E5RFS0 Uniprot:E5RFS0
Length = 221
Score = 774 (277.5 bits), Expect = 7.1e-77, P = 7.1e-77
Identities = 135/221 (61%), Positives = 165/221 (74%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSXXXXXXXXX 83
M++HEYTTKE F NF DWRK M +ER VI L KCDF ++H YFV K+
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 84 XXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
+ +E+G C +DGH+EKIGNF+IEPPGLFRGRG+HPKMG LKRR+ ED+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ 203
+INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ +KYIMLNP SKLKGE WQ
Sbjct: 121 VINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQ 180
Query: 204 KYETARKLAKSINKIRENYQADWKSKEMRIRQRAVALYFID 244
K+ETAR+L +++IR Y+ADWKS+EM+ RQRAVALYFID
Sbjct: 181 KFETARRLRGFVDEIRSQYRADWKSREMKTRQRAVALYFID 221
Score = 290 (107.1 bits), Expect = 3.5e-28, Sum P(2) = 3.5e-28
Identities = 52/75 (69%), Positives = 64/75 (85%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+ADWKS+
Sbjct: 147 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRADWKSR 206
Query: 543 EMRIRQRAVALYFID 557
EM+ RQRAVALYFID
Sbjct: 207 EMKTRQRAVALYFID 221
Score = 54 (24.1 bits), Expect = 3.5e-28, Sum P(2) = 3.5e-28
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 219 RENYQADWKSKEMRIRQRAV--AL----------YFIDKLALRAGNEKDEDQ 258
R+N+ DW+ KEM + +R V +L YF+DK A R ++E Q
Sbjct: 13 RKNFFNDWR-KEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQ 63
>UNIPROTKB|Q24BB2 [details] [associations]
symbol:TTHERM_01299650 "Eukaryotic DNA topoisomerase I,
catalytic core family protein" species:312017 "Tetrahymena
thermophila SB210" [GO:0003917 "DNA topoisomerase type I activity"
evidence=IBA] [GO:0005730 "nucleolus" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006265 "DNA topological
change" evidence=IBA] [GO:0006338 "chromatin remodeling"
evidence=IBA] [GO:0007059 "chromosome segregation" evidence=IBA]
[GO:0031298 "replication fork protection complex" evidence=IBA]
InterPro:IPR001631 InterPro:IPR008336 InterPro:IPR011010
InterPro:IPR013030 InterPro:IPR013034 InterPro:IPR013499
InterPro:IPR013500 InterPro:IPR014711 InterPro:IPR014727
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 SMART:SM00435
GO:GO:0007059 GO:GO:0005730 GO:GO:0006260 GO:GO:0006338
GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349 GO:GO:0003918 KO:K03163
GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:1.10.132.10
Gene3D:2.170.11.10 Gene3D:3.90.15.10 InterPro:IPR025834
Pfam:PF14370 SUPFAM:SSF56741 EMBL:GG662422 RefSeq:XP_001025304.1
UniGene:Tth.28266 ProteinModelPortal:Q24BB2 SMR:Q24BB2
EnsemblProtists:EAS05059 GeneID:7824310 KEGG:tet:TTHERM_01299650
ProtClustDB:CLSZ2499870 Uniprot:Q24BB2
Length = 713
Score = 677 (243.4 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 141/286 (49%), Positives = 191/286 (66%)
Query: 151 SKVPPPPPGHKWKEVRHDNQVTWLASWTEN-VQGQVKYIMLNPSSKLKGEKDWQKYETAR 209
++ P GH W E+ H VTWLAS+ ++ V+ Q KYI L+ SKLK E D +KYE AR
Sbjct: 324 NEFPKKQLGHGWSEIVHKQDVTWLASYKDDSVKKQHKYIFLSAESKLKAENDKKKYEKAR 383
Query: 210 KLAKSINKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRV 269
+L I +IRENY+ +S + RQ A Y IDKLALR GNEK E++ADTVGCCSLRV
Sbjct: 384 RLKNLIGQIRENYERKLRSSDPVDRQLGTATYLIDKLALRVGNEKSEEEADTVGCCSLRV 443
Query: 270 EHIQLHEEKDGKPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLN 329
EHIQ+ E+ + FDFLGKDS+RY N V V + V+KN+Q F++NKK DDLFDR++
Sbjct: 444 EHIQVIEDTQ-----IGFDFLGKDSMRYQNTVKVTEIVWKNMQSFIKNKKPGDDLFDRID 498
Query: 330 TSVLNKHLSELMEGLTAKVFRTYNASITLQQQLNELMDPDFSEAE---KILAYNRANRAV 386
S LN++L MEGLTAKVFRTYNAS TLQ++L++ + + + K+ Y+ ANR V
Sbjct: 499 ASSLNEYLKSQMEGLTAKVFRTYNASHTLQKELDKADEEGLDKMDLKDKLNFYDEANRNV 558
Query: 387 AVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAG 432
A+LCNHQ++V K+ D +G ++++I+ + K+ L KK G
Sbjct: 559 AILCNHQKTVGKNFDVMVGKMEQRINVYKDYEKELHTHLNKCKKNG 604
Score = 452 (164.2 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 139/449 (30%), Positives = 224/449 (49%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
GK + L+ EE+AT++++ + ++ K + NF K + + K++ D K DF
Sbjct: 161 GKPIDLNLLQEEMATYWSQTLGTDWEHKPKYRENFSKQFLDTFG-KDKGKY-DFDKFDFT 218
Query: 65 KMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRG 124
+ + ++ ++ Y +DG +EK+G F IEPP LF+G
Sbjct: 219 PIKIHLEEQKEIRKNRSKEEKNQEKQKKERLSDYYAGAILDGFREKVGQFMIEPPTLFKG 278
Query: 125 RGEHPKMGKLKRRVQAEDIIINCSKDSKVPP---PPPGHKWKEVRHDNQVTWLA-SWTEN 180
RGEHPKMG +K R+Q E ++IN SKD+ VP P H +++ ++ L W+E
Sbjct: 279 RGEHPKMGMMKGRIQPEAVVINISKDAPVPKCSVPDCIHICRQIFNEFPKKQLGHGWSEI 338
Query: 181 VQGQ-VKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEM--RIRQRA 237
V Q V ++ +K + + KL K+ N ++ Y+ + K + +IR+
Sbjct: 339 VHKQDVTWLASYKDDSVKKQHKYIFLSAESKL-KAEND-KKKYEKARRLKNLIGQIREN- 395
Query: 238 VALYFIDKLALRAGNEKDEDQADT---VGCCSLRVEHIQLHEEKD--G------------ 280
Y + LR+ + D + +LRV + + EE D G
Sbjct: 396 ---Y---ERKLRSSDPVDRQLGTATYLIDKLALRVGNEKSEEEADTVGCCSLRVEHIQVI 449
Query: 281 KPYVVCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSEL 340
+ + FDFLGKDS+RY N V V + V+KN+Q F++NKK DDLFDR++ S LN++L
Sbjct: 450 EDTQIGFDFLGKDSMRYQNTVKVTEIVWKNMQSFIKNKKPGDDLFDRIDASSLNEYLKSQ 509
Query: 341 MEGLTAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYNRANRAVAVLCNHQRSVPKSH 400
MEGLTAKVFRTYNAS TLQ++L++ + + + N + A N ++ +H
Sbjct: 510 MEGLTAKVFRTYNASHTLQKELDKADEEGLDKMDLKDKLNFYDEA-----NRNVAILCNH 564
Query: 401 DKSMGNLKEKISNKRKQ----VKDAERAL 425
K++G + + K +Q KD E+ L
Sbjct: 565 QKTVGKNFDVMVGKMEQRINVYKDYEKEL 593
Score = 305 (112.4 bits), Expect = 5.5e-24, P = 5.5e-24
Identities = 63/108 (58%), Positives = 78/108 (72%)
Query: 484 VTWLASWTEN-VQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSK 542
VTWLAS+ ++ V+ Q KYI L+ SKLK E D +KYE AR+L I +IRENY+ +S
Sbjct: 344 VTWLASYKDDSVKKQHKYIFLSAESKLKAENDKKKYEKARRLKNLIGQIRENYERKLRSS 403
Query: 543 EMRIRQRAVALYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEE 590
+ RQ A Y IDKLALR GNEK E++ADTVGCCSLRVEHIQ+ E+
Sbjct: 404 DPVDRQLGTATYLIDKLALRVGNEKSEEEADTVGCCSLRVEHIQVIED 451
Score = 113 (44.8 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 22/34 (64%), Positives = 24/34 (70%)
Query: 462 KEENKTIALGTSKLNYLDPRISVTWLASWTENVQ 495
KE+NK IALGTSK NY DPRISV W W V+
Sbjct: 657 KEKNKEIALGTSKTNYNDPRISVVWCKKWEVPVE 690
Score = 54 (24.1 bits), Expect = 2.3e-70, Sum P(2) = 2.3e-70
Identities = 27/118 (22%), Positives = 48/118 (40%)
Query: 494 VQGQVKYIMLNPSSKLKGEKDWQKYE-TARKLAKSINKIRENYQADWKSKEMRIRQRAVA 552
V K ++L K + +K+ T K+ ++I KI++ + K+ + + + +A
Sbjct: 605 VNAYEKEVILEEKDDGKHKMFVKKFPGTKEKIQEAIEKIKKKIDEEQNKKQSKEKNKEIA 664
Query: 553 LYFIDKLALRAGNEKDEDQADTVGCCSLRVEHIQLHEEKDEKKIYNKTQRAKFRWAID 610
L N D + V C V +K++ KT AKF WA+D
Sbjct: 665 L------GTSKTNYNDP-RISVVWCKKWEVP---------VEKVFPKTLIAKFVWAMD 706
>UNIPROTKB|Q7RE42 [details] [associations]
symbol:PY05226 "Eukaryotic DNA topoisomerase I, DNA
binding, putative" species:73239 "Plasmodium yoelii yoelii"
[GO:0003917 "DNA topoisomerase type I activity" evidence=IBA]
[GO:0005730 "nucleolus" evidence=IBA] [GO:0006260 "DNA replication"
evidence=IBA] [GO:0006265 "DNA topological change" evidence=IBA]
[GO:0006338 "chromatin remodeling" evidence=IBA] [GO:0007059
"chromosome segregation" evidence=IBA] [GO:0031298 "replication
fork protection complex" evidence=IBA] InterPro:IPR001631
InterPro:IPR008336 InterPro:IPR011010 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR013500
InterPro:IPR014711 InterPro:IPR014727 InterPro:IPR018521
Pfam:PF01028 Pfam:PF02919 PRINTS:PR00416 PROSITE:PS00176
SMART:SM00435 GO:GO:0007059 GO:GO:0005730 GO:GO:0006260
GO:GO:0006338 GO:GO:0031298 GO:GO:0006265 SUPFAM:SSF56349
GO:GO:0003918 eggNOG:COG3569 KO:K03163 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:1.10.132.10 Gene3D:2.170.11.10
Gene3D:3.90.15.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF56741
HSSP:P11387 EMBL:AABL01001646 RefSeq:XP_725660.1
ProteinModelPortal:Q7RE42 SMR:Q7RE42 STRING:Q7RE42 GeneID:3790999
KEGG:pyo:PY05226 EuPathDB:PlasmoDB:PY05226 Uniprot:Q7RE42
Length = 886
Score = 521 (188.5 bits), Expect = 4.4e-74, Sum P(2) = 4.4e-74
Identities = 111/281 (39%), Positives = 162/281 (57%)
Query: 7 EMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMT-------EKERAV----I 55
+++L+ AEE+AT++ +I +Y TK+ F NF K + ++ E E + I
Sbjct: 235 KIELNPKAEELATYWCSVIGTDYCTKDKFILNFFKTFINNLEKDNIIRRENENKIKNGDI 294
Query: 56 TDLSKCDFRKMHAYFVQKSXXXXXXXXXXXXXXXXXXXAITKEYGVCTIDGHKEKIGNFR 115
++ DF + + ++ Y +D +EKI + +
Sbjct: 295 SNFKFIDFMTIKEHLIKLREERLNKTKEEKEEEKKIRMEKELPYTFALVDWIREKISSNK 354
Query: 116 IEPPGLFRGRGEHPKMGKLKRRVQAEDIIINCSKDSKVP---PPPPGHKWKEVRHDNQVT 172
EPPGLFRGRGEHPK G LK+R+ ED++IN SKD+ P GH W ++ HDN+VT
Sbjct: 355 AEPPGLFRGRGEHPKQGLLKKRIFPEDVVINISKDAPAPRLYDDMCGHNWGDIYHDNKVT 414
Query: 173 WLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKEMR 232
WLA + +++ Q+KY L+ SK KG KD+ KYE ARKL ++KIR++YQ K+K +
Sbjct: 415 WLAYYKDSINDQIKYTFLSAQSKFKGYKDFLKYENARKLKSCVHKIRKDYQNKMKNKNIV 474
Query: 233 IRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHI 272
+Q A+Y ID LALR G EKD +++ADTVGCCSLRVEH+
Sbjct: 475 NKQLGTAVYLIDFLALRVGGEKDIDEEADTVGCCSLRVEHV 515
Score = 286 (105.7 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 55/103 (53%), Positives = 74/103 (71%)
Query: 484 VTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQADWKSKE 543
VTWLA + +++ Q+KY L+ SK KG KD+ KYE ARKL ++KIR++YQ K+K
Sbjct: 413 VTWLAYYKDSINDQIKYTFLSAQSKFKGYKDFLKYENARKLKSCVHKIRKDYQNKMKNKN 472
Query: 544 MRIRQRAVALYFIDKLALRAGNEKD-EDQADTVGCCSLRVEHI 585
+ +Q A+Y ID LALR G EKD +++ADTVGCCSLRVEH+
Sbjct: 473 IVNKQLGTAVYLIDFLALRVGGEKDIDEEADTVGCCSLRVEHV 515
Score = 259 (96.2 bits), Expect = 4.4e-74, Sum P(2) = 4.4e-74
Identities = 95/354 (26%), Positives = 162/354 (45%)
Query: 285 VCFDFLGKDSIRYYNEVPVEKRVFKNLQLFVENKKGSDDLFDRLNTSVLNKHLSELMEGL 344
+ DFLGKDSIRY+N V ++K+ + N+ +F +NK + +FD++ S LN++L E+M L
Sbjct: 555 ITLDFLGKDSIRYFNTVKIDKQAYINMIIFCKNKNKDEGVFDQITCSKLNEYLKEIMPTL 614
Query: 345 TAKVFRTYNASITLQQQLNELMDPDFSEAEKILAYN---RANRAVAVL-CNHQRSVPKSH 400
+AKVFRTYNASITL QQL L + + +L+ + R + + + +V +
Sbjct: 615 SAKVFRTYNASITLDQQLRRLKEIKGKNDDSLLSCDIDIRKPKKIKLENATSSSNVLSDY 674
Query: 401 DKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRXXXXXXXXXXXXT 460
+ + N EKI K + + L KK E D K + +
Sbjct: 675 NDAPNN--EKIEKKENENTSSNENLM--KKENE-----DNKNSPIEVDVSNVNDLINFFN 725
Query: 461 DKEENKTIALGTSKLNYLDPRISVTW------LASWTENVQGQVKYIMLNPSSKLKGEKD 514
+ N+ +A+ + + + T + + E++Q KY+ K EK+
Sbjct: 726 NA--NREVAILCNHQRSIPKQHDTTMSKIKKQIEIYNEDMQEYKKYLQY--LKKNNNEKE 781
Query: 515 WQKYETARKLAKSI--NKIRENYQADWKSKEMRIRQRAVALYFIDKLALRAGNEKDEDQA 572
+ L S+ NK++EN KE +++ +AL I K+ L K D
Sbjct: 782 FTFVSKVVTLDGSLRPNKVKENM------KEESCKKKLIAL--IKKVELLENQMKVRDDN 833
Query: 573 DTVGCCSLRVEHIQ--------LHEEKDEKKIYNKTQRAKFRWAIDMATADFVF 618
T+ + ++ ++ E +KI+N++ R KF WA+ T +F F
Sbjct: 834 KTIALGTSKINYMDPRITVAFCKQFEIPIEKIFNRSLRLKFPWAM-FVTKNFRF 886
Score = 61 (26.5 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 380 NRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGE-SKAMT 438
N N V + Q+S+ +D N S +K +K + ++K K++GE S +
Sbjct: 105 NEENLNVCKIKKKQKSISADNDNLNSN--NTTSEGKKTLKHLKESVKTKKESGEKSSRVK 162
Query: 439 DKKKTA 444
++KK A
Sbjct: 163 EEKKIA 168
Score = 54 (24.1 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 402 KSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAMTDKK 441
K++ +LKE + K++ + + R ++ K A + K T KK
Sbjct: 139 KTLKHLKESVKTKKESGEKSSRVKEEKKIANKVKKETVKK 178
Score = 45 (20.9 bits), Expect = 1.5e-21, Sum P(3) = 1.5e-21
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 407 LKEKISNKRKQVKDAERALKDAKKAGESKAMTD 439
L+E+ NK K+ K+ E+ ++ K+ + A+ D
Sbjct: 312 LREERLNKTKEEKEEEKKIRMEKELPYTFALVD 344
Score = 44 (20.5 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 29/122 (23%), Positives = 51/122 (41%)
Query: 321 SDD--LFDRLNTSVLNKHLSELMEGLTAKVFRT-YNASITLQQQLNELMDPDFSEAEKIL 377
SDD L D + +V + L++ AK+ T N S ++N D ++ +
Sbjct: 15 SDDDILIDNIKKNVYSTKLNDTQIN-DAKINDTKINDSKINDSKIN---DTQINDNTTCI 70
Query: 378 AYNRANRAVAVLCNHQRSVPKSHDKSMGNLKEKISNKRKQVKDAERALKDAKKAGESKAM 437
N+ N V+ N+ +S K ++ + K++ KRK ++ K KK A
Sbjct: 71 P-NKEN----VITNNSKSSAKEKCSTIRRVGSKLNTKRKNEENLN-VCKIKKKQKSISAD 124
Query: 438 TD 439
D
Sbjct: 125 ND 126
Score = 42 (19.8 bits), Expect = 1.5e-21, Sum P(3) = 1.5e-21
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 193 SSKLKGEK---DWQKYETARKLAKSINKIRENYQ 223
SS++K EK + K ET +K K K EN++
Sbjct: 158 SSRVKEEKKIANKVKKETVKKPKKIPKKSEENFE 191
>UNIPROTKB|E5RJ95 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR008336 InterPro:IPR013030
InterPro:IPR013034 InterPro:IPR013499 InterPro:IPR014711
Pfam:PF02919 SMART:SM00435 GO:GO:0005739 GO:GO:0005694
GO:GO:0006265 EMBL:AC087793 HGNC:HGNC:29787 GO:GO:0003917
Gene3D:1.10.10.41 Gene3D:2.170.11.10 Gene3D:3.90.15.10
SUPFAM:SSF56741 IPI:IPI00984236 ProteinModelPortal:E5RJ95
SMR:E5RJ95 Ensembl:ENST00000519591 ArrayExpress:E5RJ95 Bgee:E5RJ95
Uniprot:E5RJ95
Length = 201
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 118/201 (58%), Positives = 146/201 (72%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFRKMHAYFVQKSXXXXXXXXX 83
M++HEYTTKE F NF DWRK M +ER VI L KCDF ++H YFV K+
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSRE 60
Query: 84 XXXXXXXXXXAITKEYGVCTIDGHKEKIGNFRIEPPGLFRGRGEHPKMGKLKRRVQAEDI 143
+ +E+G C +DGH+EKIGNF+IEPPGLFRGRG+HPKMG LKRR+ ED+
Sbjct: 61 EKQKLKEEAEKLQQEFGYCILDGHQEKIGNFKIEPPGLFRGRGDHPKMGMLKRRITPEDV 120
Query: 144 IINCSKDSKVPPPPPGHKWKEVRHDNQVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQ 203
+INCS+DSK+P PP GH+WKEVR DN VTWLA+WTE+VQ +KYIMLNP SKLKGE WQ
Sbjct: 121 VINCSRDSKIPEPPAGHQWKEVRSDNTVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQ 180
Query: 204 KYETARKLAKSINKIRENYQA 224
K+ETAR+L +++IR Y+A
Sbjct: 181 KFETARRLRGFVDEIRSQYRA 201
Score = 197 (74.4 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 35/55 (63%), Positives = 45/55 (81%)
Query: 483 SVTWLASWTENVQGQVKYIMLNPSSKLKGEKDWQKYETARKLAKSINKIRENYQA 537
+VTWLA+WTE+VQ +KYIMLNP SKLKGE WQK+ETAR+L +++IR Y+A
Sbjct: 147 TVTWLAAWTESVQNSIKYIMLNPCSKLKGETAWQKFETARRLRGFVDEIRSQYRA 201
Score = 54 (24.1 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 219 RENYQADWKSKEMRIRQRAV--AL----------YFIDKLALRAGNEKDEDQ 258
R+N+ DW+ KEM + +R V +L YF+DK A R ++E Q
Sbjct: 13 RKNFFNDWR-KEMAVEEREVIKSLDKCDFTEIHRYFVDKAAARKVLSREEKQ 63
>UNIPROTKB|E5RGE7 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR008336 InterPro:IPR013030 InterPro:IPR013034
Pfam:PF02919 GO:GO:0005694 GO:GO:0006265 EMBL:AC087793
HGNC:HGNC:29787 GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:2.170.11.10
SUPFAM:SSF56741 IPI:IPI00974511 ProteinModelPortal:E5RGE7
SMR:E5RGE7 Ensembl:ENST00000518007 ArrayExpress:E5RGE7 Bgee:E5RGE7
Uniprot:E5RGE7
Length = 134
Score = 232 (86.7 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 41/70 (58%), Positives = 51/70 (72%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ ++LS AEE+ATFY RM++HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 49 GRPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFT 108
Query: 65 KMHAYFVQKS 74
++H YFV K+
Sbjct: 109 EIHRYFVDKA 118
>UNIPROTKB|E5RGR2 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR008336 InterPro:IPR013030 InterPro:IPR013034
Pfam:PF02919 GO:GO:0005694 GO:GO:0006265 EMBL:AC087793
HGNC:HGNC:29787 GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:2.170.11.10
SUPFAM:SSF56741 IPI:IPI00976362 ProteinModelPortal:E5RGR2
SMR:E5RGR2 Ensembl:ENST00000518951 ArrayExpress:E5RGR2 Bgee:E5RGR2
Uniprot:E5RGR2
Length = 167
Score = 232 (86.7 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 41/70 (58%), Positives = 51/70 (72%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDFR 64
G+ ++LS AEE+ATFY RM++HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 80 GRPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDFT 139
Query: 65 KMHAYFVQKS 74
++H YFV K+
Sbjct: 140 EIHRYFVDKA 149
>UNIPROTKB|E5RGR4 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR008336 InterPro:IPR013030 InterPro:IPR013034
Pfam:PF02919 GO:GO:0005694 GO:GO:0006265 EMBL:AC087793
HGNC:HGNC:29787 GO:GO:0003917 Gene3D:1.10.10.41 Gene3D:2.170.11.10
SUPFAM:SSF56741 IPI:IPI00974139 ProteinModelPortal:E5RGR4
SMR:E5RGR4 Ensembl:ENST00000518760 ArrayExpress:E5RGR4 Bgee:E5RGR4
Uniprot:E5RGR4
Length = 164
Score = 201 (75.8 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 36/59 (61%), Positives = 43/59 (72%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTEKERAVITDLSKCDF 63
G+ ++LS AEE+ATFY RM++HEYTTKE F NF DWRK M +ER VI L KCDF
Sbjct: 106 GRPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKEMAVEEREVIKSLDKCDF 164
>UNIPROTKB|H0YAR3 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR009054 InterPro:IPR011010 InterPro:IPR014727
InterPro:IPR018521 PROSITE:PS00176 GO:GO:0005694 GO:GO:0006265
SUPFAM:SSF56349 EMBL:AC087793 HGNC:HGNC:29787 GO:GO:0003917
Gene3D:1.10.132.10 InterPro:IPR025834 Pfam:PF14370 SUPFAM:SSF46596
Ensembl:ENST00000519977 Uniprot:H0YAR3
Length = 111
Score = 165 (63.1 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 34/78 (43%), Positives = 50/78 (64%)
Query: 409 EKISNKRKQVKDAERALKDAKKAGESKAMTDKKKTALGRXXXXXXXXXXXXTDKEENKTI 468
E+++ R +++ A RA A+ G+S+++ +KK+ L + TDKEENK +
Sbjct: 2 EQVAEARAELRRA-RAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQV 60
Query: 469 ALGTSKLNYLDPRISVTW 486
ALGTSKLNYLDPRIS+ W
Sbjct: 61 ALGTSKLNYLDPRISIAW 78
>UNIPROTKB|H0YC03 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR008336 InterPro:IPR013034 Pfam:PF02919 GO:GO:0005694
GO:GO:0006265 EMBL:AC087793 HGNC:HGNC:29787 GO:GO:0003917
Gene3D:1.10.10.41 SUPFAM:SSF56741 Ensembl:ENST00000523417
Uniprot:H0YC03
Length = 123
Score = 152 (58.6 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 26/45 (57%), Positives = 34/45 (75%)
Query: 5 GKEMKLSQDAEEIATFYARMIEHEYTTKEAFNTNFMKDWRKSMTE 49
G+ ++LS AEE+ATFY RM++HEYTTKE F NF DWRK + +
Sbjct: 75 GRPVRLSVAAEEVATFYGRMLDHEYTTKEVFRKNFFNDWRKVLCQ 119
>TAIR|locus:4515103458 [details] [associations]
symbol:AT4G26701 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003917 "DNA
topoisomerase type I activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005694 "chromosome" evidence=IEA] [GO:0006265
"DNA topological change" evidence=IEA] InterPro:IPR011010
InterPro:IPR014727 InterPro:IPR018521 PROSITE:PS00176 GO:GO:0005694
EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161565 GO:GO:0006265
UniGene:At.10511 UniGene:At.73283 SUPFAM:SSF56349 GO:GO:0003917
Gene3D:1.10.132.10 InterPro:IPR025834 Pfam:PF14370 IPI:IPI00892122
RefSeq:NP_001119063.1 ProteinModelPortal:B3H4K2 SMR:B3H4K2
EnsemblPlants:AT4G26701.1 GeneID:6241184 KEGG:ath:AT4G26701
TAIR:At4g26701 eggNOG:NOG317235 HOGENOM:HOG000064570 OMA:HEAPIEK
PhylomeDB:B3H4K2 ProtClustDB:CLSN2925574 Genevestigator:B3H4K2
Uniprot:B3H4K2
Length = 69
Score = 105 (42.0 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 18/25 (72%), Positives = 23/25 (92%)
Query: 462 KEENKTIALGTSKLNYLDPRISVTW 486
KE+ KT+ALGTSK+NY+DPRI+V W
Sbjct: 13 KEDLKTVALGTSKINYMDPRITVAW 37
Score = 56 (24.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 588 HEEKDEKKIYNKTQRAKFRWAIDM 611
HE EK I+NK+ KF WA+D+
Sbjct: 41 HEAPIEK-IFNKSLLEKFAWAMDV 63
>UNIPROTKB|H0YBR3 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA]
InterPro:IPR008336 InterPro:IPR013034 Pfam:PF02919 GO:GO:0005694
GO:GO:0006265 EMBL:AC087793 HGNC:HGNC:29787 GO:GO:0003917
Gene3D:1.10.10.41 SUPFAM:SSF56741 Ensembl:ENST00000522121
Bgee:H0YBR3 Uniprot:H0YBR3
Length = 49
Score = 121 (47.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 20/29 (68%), Positives = 23/29 (79%)
Query: 18 ATFYARMIEHEYTTKEAFNTNFMKDWRKS 46
ATFY RM++HEYTTKE F NF DWRK+
Sbjct: 1 ATFYGRMLDHEYTTKEVFRKNFFNDWRKA 29
>UNIPROTKB|E5RJ33 [details] [associations]
symbol:TOP1MT "DNA topoisomerase I, mitochondrial"
species:9606 "Homo sapiens" [GO:0003917 "DNA topoisomerase type I
activity" evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
[GO:0006265 "DNA topological change" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR008336 InterPro:IPR013034
Pfam:PF02919 GO:GO:0005739 GO:GO:0005694 GO:GO:0006265
EMBL:AC087793 HGNC:HGNC:29787 GO:GO:0003917 Gene3D:1.10.10.41
IPI:IPI01018235 ProteinModelPortal:E5RJ33 SMR:E5RJ33
Ensembl:ENST00000520950 ArrayExpress:E5RJ33 Bgee:E5RJ33
Uniprot:E5RJ33
Length = 33
Score = 114 (45.2 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 24 MIEHEYTTKEAFNTNFMKDWRKSMTEKERAVI 55
M++HEYTTKE F NF DWRK M +ER VI
Sbjct: 1 MLDHEYTTKEVFRKNFFNDWRKEMAVEEREVI 32
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 618 587 0.00083 120 3 11 22 0.42 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 51
No. of states in DFA: 622 (66 KB)
Total size of DFA: 346 KB (2169 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 60.56u 0.14s 60.70t Elapsed: 00:00:40
Total cpu time: 60.58u 0.14s 60.72t Elapsed: 00:00:47
Start: Thu Aug 15 11:55:07 2013 End: Thu Aug 15 11:55:54 2013