BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17744
         (326 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1DLY|A Chain A, X-Ray Crystal Structure Of Hemoglobin From The Green
           Unicellular Alga Chlamydomonas Eugametos
          Length = 164

 Score = 28.1 bits (61), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 9/68 (13%)

Query: 216 KDIGDLHKNKPPPSVHYSRGMPDLDNLMQEWSNDVEQTISEVGLPPEDLDCDLTTYIDLM 275
           KD+   HK+  P   H S      D   Q  +  +  T++E+G+PPED+   +       
Sbjct: 105 KDMRTAHKDLVP---HLS------DVHFQAVARHLSDTLTELGVPPEDITDAMAVVASTR 155

Query: 276 AAILDIPR 283
             +L++P+
Sbjct: 156 TEVLNMPQ 163


>pdb|1UVX|A Chain A, Heme-Ligand Tunneling On Group I Truncated Hemoglobins
          Length = 121

 Score = 27.7 bits (60), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 9/68 (13%)

Query: 216 KDIGDLHKNKPPPSVHYSRGMPDLDNLMQEWSNDVEQTISEVGLPPEDLDCDLTTYIDLM 275
           KD+   HK+  P   H S      D   Q  +  +  T++E+G+PPED+   +       
Sbjct: 62  KDMRTAHKDLVP---HLS------DVHFQAVARHLSDTLTELGVPPEDITDAMAVVASTR 112

Query: 276 AAILDIPR 283
             +L++P+
Sbjct: 113 TEVLNMPQ 120


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.134    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,187,722
Number of Sequences: 62578
Number of extensions: 358157
Number of successful extensions: 568
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 6
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)