BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17744
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1LZB4|IFT46_BOVIN Intraflagellar transport protein 46 homolog OS=Bos taurus GN=IFT46
PE=2 SV=1
Length = 301
Score = 268 bits (685), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 122/225 (54%), Positives = 170/225 (75%)
Query: 89 GGGADKAYDPLEFAHLATSTDLKEMFAYIEKYTPQPIDLTYKLRPFIPDYIPAVGDIDAF 148
G + AYDP ++ HL S ++KE+F YI +YTPQ IDL +KL+PFIPD+IPAVGDIDAF
Sbjct: 54 GAPLEGAYDPADYEHLPVSAEVKELFQYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAF 113
Query: 149 IKVARPDGRPDSLGLTVLDEPCFEQSDPAILNLQLRQSSKCPTSSKATIIKKVEDADKNK 208
+KV RPDG+PD+LGL VLDEP +QSDP +L+L L ++SK ++ +K +EDA+KN
Sbjct: 114 LKVPRPDGKPDNLGLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQHMKVKSLEDAEKNP 173
Query: 209 KAIDRWIKDIGDLHKNKPPPSVHYSRGMPDLDNLMQEWSNDVEQTISEVGLPPEDLDCDL 268
KAID WI+ I +LH++KPP +VHY+R MPD+D LMQEWS + E+ + +V LP ++DC L
Sbjct: 174 KAIDTWIESISELHRSKPPATVHYTRPMPDIDTLMQEWSPEFEELLGKVSLPTAEIDCSL 233
Query: 269 TTYIDLMAAILDIPRFESRIETLHVIFSLYAAIQSSSNQNAAYPG 313
YID++ AILDIP ++SRI++LH++FSLY+ ++S + A G
Sbjct: 234 AEYIDMICAILDIPVYKSRIQSLHLLFSLYSEFKNSQHFKALAEG 278
>sp|Q9NQC8|IFT46_HUMAN Intraflagellar transport protein 46 homolog OS=Homo sapiens
GN=IFT46 PE=2 SV=1
Length = 304
Score = 268 bits (685), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 122/225 (54%), Positives = 170/225 (75%)
Query: 89 GGGADKAYDPLEFAHLATSTDLKEMFAYIEKYTPQPIDLTYKLRPFIPDYIPAVGDIDAF 148
G + AYDP ++ HL S ++KE+F YI +YTPQ IDL +KL+PFIPD+IPAVGDIDAF
Sbjct: 57 GAPLEGAYDPADYEHLPVSAEIKELFQYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAF 116
Query: 149 IKVARPDGRPDSLGLTVLDEPCFEQSDPAILNLQLRQSSKCPTSSKATIIKKVEDADKNK 208
+KV RPDG+PD+LGL VLDEP +QSDP +L+L L ++SK ++ +K +EDA+KN
Sbjct: 117 LKVPRPDGKPDNLGLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQHMKVKSLEDAEKNP 176
Query: 209 KAIDRWIKDIGDLHKNKPPPSVHYSRGMPDLDNLMQEWSNDVEQTISEVGLPPEDLDCDL 268
KAID WI+ I +LH++KPP +VHY+R MPD+D LMQEWS + E+ + +V LP ++DC L
Sbjct: 177 KAIDTWIESISELHRSKPPATVHYTRPMPDIDTLMQEWSPEFEELLGKVSLPTAEIDCSL 236
Query: 269 TTYIDLMAAILDIPRFESRIETLHVIFSLYAAIQSSSNQNAAYPG 313
YID++ AILDIP ++SRI++LH++FSLY+ ++S + A G
Sbjct: 237 AEYIDMICAILDIPVYKSRIQSLHLLFSLYSEFKNSQHFKALAEG 281
>sp|Q6AXQ9|IFT46_RAT Intraflagellar transport protein 46 homolog OS=Rattus norvegicus
GN=Ift46 PE=2 SV=2
Length = 301
Score = 267 bits (682), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 122/225 (54%), Positives = 169/225 (75%)
Query: 89 GGGADKAYDPLEFAHLATSTDLKEMFAYIEKYTPQPIDLTYKLRPFIPDYIPAVGDIDAF 148
G + AYDP ++ HL S ++KE+F YI +YTPQ IDL +KL+PFIPD+IPAVGDIDAF
Sbjct: 54 GAPLEGAYDPADYEHLPVSAEIKELFEYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAF 113
Query: 149 IKVARPDGRPDSLGLTVLDEPCFEQSDPAILNLQLRQSSKCPTSSKATIIKKVEDADKNK 208
+KV RPDG+PD LGL VLDEP +QSDP +L+L L ++SK ++ +K +EDA+KN
Sbjct: 114 LKVPRPDGKPDHLGLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQHMKVKSLEDAEKNP 173
Query: 209 KAIDRWIKDIGDLHKNKPPPSVHYSRGMPDLDNLMQEWSNDVEQTISEVGLPPEDLDCDL 268
KAID WI+ I +LH++KPP +VHY+R MPD+D LMQEWS + E+ + +V LP ++DC L
Sbjct: 174 KAIDTWIESISELHRSKPPATVHYTRPMPDIDTLMQEWSPEFEELLGKVSLPTVEIDCSL 233
Query: 269 TTYIDLMAAILDIPRFESRIETLHVIFSLYAAIQSSSNQNAAYPG 313
YID++ AILDIP ++SRI++LH++FSLY+ ++S + A G
Sbjct: 234 AEYIDMICAILDIPFYKSRIQSLHLLFSLYSEFKNSQHFKALAEG 278
>sp|Q9DB07|IFT46_MOUSE Intraflagellar transport protein 46 homolog OS=Mus musculus
GN=Ift46 PE=1 SV=1
Length = 301
Score = 266 bits (681), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 122/225 (54%), Positives = 169/225 (75%)
Query: 89 GGGADKAYDPLEFAHLATSTDLKEMFAYIEKYTPQPIDLTYKLRPFIPDYIPAVGDIDAF 148
G + AYDP ++ HL S ++KE+F YI +YTPQ IDL +KL+PFIPD+IPAVGDIDAF
Sbjct: 54 GAPLEGAYDPADYEHLPVSAEIKELFEYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAF 113
Query: 149 IKVARPDGRPDSLGLTVLDEPCFEQSDPAILNLQLRQSSKCPTSSKATIIKKVEDADKNK 208
+KV RPDG+PD LGL VLDEP +QSDP +L+L L ++SK ++ +K +EDA+KN
Sbjct: 114 LKVPRPDGKPDHLGLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQHMKVKSLEDAEKNP 173
Query: 209 KAIDRWIKDIGDLHKNKPPPSVHYSRGMPDLDNLMQEWSNDVEQTISEVGLPPEDLDCDL 268
KAID WI+ I +LH++KPP +VHY+R MPD+D LMQEWS + E+ + +V LP ++DC L
Sbjct: 174 KAIDTWIESISELHRSKPPATVHYTRPMPDIDTLMQEWSPEFEELLGKVSLPTVEIDCSL 233
Query: 269 TTYIDLMAAILDIPRFESRIETLHVIFSLYAAIQSSSNQNAAYPG 313
YID++ AILDIP ++SRI++LH++FSLY+ ++S + A G
Sbjct: 234 AEYIDMICAILDIPFYKSRIQSLHLLFSLYSEFKNSQHFKALAEG 278
>sp|A7MBP4|IFT46_DANRE Intraflagellar transport protein 46 homolog OS=Danio rerio GN=ift46
PE=2 SV=2
Length = 384
Score = 265 bits (677), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 117/225 (52%), Positives = 171/225 (76%), Gaps = 1/225 (0%)
Query: 89 GGGADKAYDPLEFAHLATSTDLKEMFAYIEKYTPQPIDLTYKLRPFIPDYIPAVGDIDAF 148
G + AYDP ++ HL + ++KE+F YI +YTPQ I+L +KL+PFIPD+IPAVGDIDAF
Sbjct: 139 GSAPEGAYDPADYEHLPVTGEIKELFQYITRYTPQTIELDHKLKPFIPDFIPAVGDIDAF 198
Query: 149 IKVARPDGRPDSLGLTVLDEPCFEQSDPAILNLQLRQSSKCPTSSKATIIKKVEDADKNK 208
+KV RPDG+PD+LGL VLDEPC +QSDP +L+L L ++SK ++ +K +E+ +KN
Sbjct: 199 LKVPRPDGKPDNLGLLVLDEPCTKQSDPTVLSLWLSENSKQHNVTEVK-VKSIENPEKNP 257
Query: 209 KAIDRWIKDIGDLHKNKPPPSVHYSRGMPDLDNLMQEWSNDVEQTISEVGLPPEDLDCDL 268
KAID WI+ I +LH++KPP +VHY+R MPD+D+LMQEW ++ E+ + +V LP D+DCDL
Sbjct: 258 KAIDNWIESISELHRSKPPATVHYTRPMPDIDSLMQEWPSEFEELLGKVNLPTADIDCDL 317
Query: 269 TTYIDLMAAILDIPRFESRIETLHVIFSLYAAIQSSSNQNAAYPG 313
Y+D++ ILDIP +++RI +LHV+F+LY+ ++S + +A G
Sbjct: 318 AEYVDMICGILDIPVYKNRIHSLHVLFTLYSEFKNSQHFKSATDG 362
>sp|Q5DHJ5|IFT46_SCHJA Intraflagellar transport protein 46 homolog OS=Schistosoma
japonicum GN=SJCHGC08984 PE=2 SV=1
Length = 330
Score = 256 bits (654), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 116/222 (52%), Positives = 160/222 (72%), Gaps = 6/222 (2%)
Query: 85 DGGEGGGADKAYDPLEFAHLATSTDLKEMFAYIEKYTPQPIDLTYKLRPFIPDYIPAVGD 144
D EG Y+P ++ HL S+++KE+F YI++YTPQ I+L KL+PFIPDYIPAVGD
Sbjct: 106 DATEG-----VYNPADYEHLTVSSEIKEIFEYIQRYTPQTIELETKLKPFIPDYIPAVGD 160
Query: 145 IDAFIKVARPDGRPDSLGLTVLDEPCFEQSDPAILNLQLRQSSKCPTSSKATIIKKVEDA 204
IDAF+KV RPDG+PD LGL VLDEPC QSDP +L+LQLR SK T++K +K +E+A
Sbjct: 161 IDAFLKVPRPDGKPDYLGLLVLDEPCANQSDPTVLDLQLRALSK-QTTTKQVTVKSLENA 219
Query: 205 DKNKKAIDRWIKDIGDLHKNKPPPSVHYSRGMPDLDNLMQEWSNDVEQTISEVGLPPEDL 264
+ KAI+ WIK I DL++ KPPP+VHY++ MP++ LM EW E++IS + L L
Sbjct: 220 EHQTKAIENWIKSIADLYRTKPPPTVHYTKNMPEISQLMSEWPKSFEESISNMQLSLSQL 279
Query: 265 DCDLTTYIDLMAAILDIPRFESRIETLHVIFSLYAAIQSSSN 306
DC L Y+D++ A+LDIP + +RI +LH++FSLY ++S +
Sbjct: 280 DCSLKDYVDIICALLDIPVYNNRIHSLHLLFSLYLEFKNSQH 321
>sp|A2T2X4|IFT46_CHLRE Intraflagellar transport protein 46 OS=Chlamydomonas reinhardtii
GN=IFT46 PE=1 SV=1
Length = 344
Score = 218 bits (555), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 148/211 (70%), Gaps = 1/211 (0%)
Query: 95 AYDPLEFAHLATSTDLKEMFAYIEKYTPQPIDLTYKLRPFIPDYIPAVGDIDAFIKVARP 154
AY+ E+ HL D++E+F+YI +Y PQ ++L +++PFIPDYIPAVG ID FIKV RP
Sbjct: 101 AYNAQEYKHLNVGEDVRELFSYIGRYKPQTVELDTRIKPFIPDYIPAVGGIDEFIKVPRP 160
Query: 155 DGRPDSLGLTVLDEPCFEQSDPAILNLQLRQSSKCPTSSKATIIKKVEDADKNK-KAIDR 213
D +PD LGL VLDEP +QSDP +L LQLRQ SK +KA ++ ++E D+NK K I +
Sbjct: 161 DTKPDYLGLKVLDEPAAKQSDPTVLTLQLRQLSKEAPGAKADMVGRLEHTDENKAKKIQQ 220
Query: 214 WIKDIGDLHKNKPPPSVHYSRGMPDLDNLMQEWSNDVEQTISEVGLPPEDLDCDLTTYID 273
WI I D+HK KP +V+YS+ MP+++ LMQEW +VE + + +P D++ D+ TY
Sbjct: 221 WIASINDIHKAKPAATVNYSKRMPEIEALMQEWPPEVETFLKTMHMPSGDVELDIKTYAR 280
Query: 274 LMAAILDIPRFESRIETLHVIFSLYAAIQSS 304
L+ +LDIP ++ +E+LHV+F+LY +++
Sbjct: 281 LVCTLLDIPVYDDPVESLHVLFTLYLEFKNN 311
>sp|O88588|PACS1_RAT Phosphofurin acidic cluster sorting protein 1 OS=Rattus norvegicus
GN=Pacs1 PE=2 SV=1
Length = 961
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 3 DESIDVVNAEEVQSPTGSVSSGENGEARVPMKIESSLRPGSAMKMQLSEHQTHIPLHSRT 62
D S +V E+V++P S + G A P K+E + P L E Q PL RT
Sbjct: 466 DASTSLVVPEKVKTPMKSSKADLQGSAS-PSKVEGTHTPRQKRSTPLKERQLSKPLSERT 524
Query: 63 NSPRGDSSFD 72
NS + S D
Sbjct: 525 NSSDSERSPD 534
>sp|Q8K212|PACS1_MOUSE Phosphofurin acidic cluster sorting protein 1 OS=Mus musculus
GN=Pacs1 PE=1 SV=2
Length = 961
Score = 31.6 bits (70), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 3 DESIDVVNAEEVQSPTGSVSSGENGEARVPMKIESSLRPGSAMKMQLSEHQTHIPLHSRT 62
D S +V E+V++P S + G A P K+E + P L E Q PL RT
Sbjct: 466 DVSTSLVVPEKVKTPMKSSKADLQGSAS-PSKVEGTHTPRQKRSTPLKERQLSKPLSERT 524
Query: 63 NSPRGDSSFD 72
NS + S D
Sbjct: 525 NSSDSERSPD 534
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,257,976
Number of Sequences: 539616
Number of extensions: 6459432
Number of successful extensions: 29684
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 28698
Number of HSP's gapped (non-prelim): 714
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)