Query psy17744
Match_columns 326
No_of_seqs 94 out of 96
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 21:49:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dck_A Sodium channel protein 53.3 9.5 0.00033 33.5 3.4 29 273-301 60-89 (168)
2 2hdc_A Protein (transcription 48.3 8 0.00027 31.0 1.9 25 146-170 58-82 (97)
3 2hfh_A Genesis, HFH-2; HNF-3 h 46.6 8.3 0.00028 31.7 1.8 26 146-171 59-84 (109)
4 2c6y_A Forkhead box protein K2 43.6 9.5 0.00032 31.4 1.7 57 109-168 38-94 (111)
5 1vtn_C HNF-3/FORK head DNA-rec 39.6 14 0.00047 29.9 2.1 27 146-172 59-85 (102)
6 3frm_A Uncharacterized conserv 39.3 32 0.0011 29.6 4.5 46 208-259 50-95 (254)
7 1kq8_A HFH-1, hepatocyte nucle 26.4 34 0.0012 27.4 2.3 28 146-173 58-86 (100)
8 2rqh_A G1 to S phase transitio 25.9 24 0.00083 22.6 1.1 10 132-141 2-16 (26)
9 2kav_A Sodium channel protein 22.2 25 0.00085 29.5 0.8 70 207-301 38-112 (129)
10 3bpy_A FORK head domain, forkh 20.7 43 0.0015 26.1 1.8 20 146-167 66-85 (85)
No 1
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=53.34 E-value=9.5 Score=33.46 Aligned_cols=29 Identities=17% Similarity=0.478 Sum_probs=24.2
Q ss_pred HHHHhhcCCCCC-CChhhHHHHHHHHHHHH
Q psy17744 273 DLMAAILDIPRF-ESRIETLHVIFSLYAAI 301 (326)
Q Consensus 273 diiC~iLDIPV~-~s~IeSLHvLFsLY~ef 301 (326)
++.|.-+|||++ +++|+.+-|||+|=-.+
T Consensus 60 ~~~L~~mdiPl~~~~~Vhf~dvL~ALtk~v 89 (168)
T 4dck_A 60 QISLINMDLPMVSGDRIHCMDILFAFTKRV 89 (168)
T ss_dssp HHHHHHSCCEEETTTEEEHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCCCCEEeHHHHHHHHHHHH
Confidence 455789999998 78999999999995443
No 2
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=48.26 E-value=8 Score=31.02 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=20.0
Q ss_pred ccceeeeCCCCCCcccCCeeecCCC
Q psy17744 146 DAFIKVARPDGRPDSLGLTVLDEPC 170 (326)
Q Consensus 146 DaFiKVpRPDg~~d~LGL~vLDEP~ 170 (326)
+.|+||||+.+.+..=+++.||+=+
T Consensus 58 ~~F~Kv~r~~~~~gKg~~W~l~p~~ 82 (97)
T 2hdc_A 58 DCFVKIPREPGNPGKGNYWTLDPQS 82 (97)
T ss_dssp HCCEEECSCTTCSSSCCEEECCTTH
T ss_pred hheeecCCCCCCCCCcceEEECcCH
Confidence 6899999997777667788988643
No 3
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=46.58 E-value=8.3 Score=31.67 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=21.2
Q ss_pred ccceeeeCCCCCCcccCCeeecCCCC
Q psy17744 146 DAFIKVARPDGRPDSLGLTVLDEPCF 171 (326)
Q Consensus 146 DaFiKVpRPDg~~d~LGL~vLDEP~~ 171 (326)
++|+||||+.+.+..=+++.||+=+.
T Consensus 59 ~~F~Kv~r~~~~~GKG~~W~l~p~~~ 84 (109)
T 2hfh_A 59 DCFVKIPREPGNPGKGNYWTLDPQSE 84 (109)
T ss_dssp TCCBCCTTCTTSCSSCCCBBCCTTCC
T ss_pred hhhhcCCCCCCCCCCceeEEECccHH
Confidence 68999999987777778999987543
No 4
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=43.58 E-value=9.5 Score=31.36 Aligned_cols=57 Identities=21% Similarity=0.191 Sum_probs=31.4
Q ss_pred HHHHHHHHhhhcCCCccCCCCccccCCCCcccccCCcccceeeeCCCCCCcccCCeeecC
Q psy17744 109 DLKEMFAYIEKYTPQPIDLTYKLRPFIPDYIPAVGDIDAFIKVARPDGRPDSLGLTVLDE 168 (326)
Q Consensus 109 EiKeLF~yI~rYtPq~ieL~~kLkPFIPDyIPAVGDIDaFiKVpRPDg~~d~LGL~vLDE 168 (326)
-++|+++||..--|---.-..-.|==|- -.+-==+.|+||||+.+.+..=+++.||+
T Consensus 38 tL~eIY~~I~~~fPyyr~~~~gWqNSIR---HNLSln~~F~Kv~r~~~~~GKG~~W~l~p 94 (111)
T 2c6y_A 38 TLNGIYTHITKNYPYYRTADKGWQNSIR---HNLSLNRYFIKVPRSQEEPGKGSFWRIDP 94 (111)
T ss_dssp EHHHHHHHHHHHCTTSCTTCHHHHHHHH---HHHHHSTTEEEECCCTTSCCSSCEEEECH
T ss_pred cHHHHHHHHHHcCCccccCCCeeecchh---HHhhhhhhhccccCCCCCCCCcceEEeCh
Confidence 4889999999866531100000000000 00001268999999876666667888876
No 5
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=39.64 E-value=14 Score=29.87 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=21.5
Q ss_pred ccceeeeCCCCCCcccCCeeecCCCCC
Q psy17744 146 DAFIKVARPDGRPDSLGLTVLDEPCFE 172 (326)
Q Consensus 146 DaFiKVpRPDg~~d~LGL~vLDEP~~~ 172 (326)
+.|+||||+.+.+..=+++.||+=+..
T Consensus 59 ~~F~kv~r~~~~~GKG~~W~l~p~~~~ 85 (102)
T 1vtn_C 59 DCFVKVARSPDKPGKGSYWALHPSSGN 85 (102)
T ss_dssp TTEEEECCCSCSSCSSCEEEECGGGCS
T ss_pred cceEecCCCCCCCCCcceEEECcCHHH
Confidence 789999998766777788999876553
No 6
>3frm_A Uncharacterized conserved protein; APC61048, staphylococcus epidermidis ATCC structural genomics, PSI-2, protein structure initiative; HET: MES; 2.32A {Staphylococcus epidermidis}
Probab=39.27 E-value=32 Score=29.58 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCceeecCCCCChHHHHHhhhHHHHHHhhhcCC
Q psy17744 208 KKAIDRWIKDIGDLHKNKPPPSVHYSRGMPDLDNLMQEWSNDVEQTISEVGL 259 (326)
Q Consensus 208 pk~Id~WI~sI~eLHrsKPp~tV~Ys~~MPDId~LMQeWP~e~Ee~L~~~~l 259 (326)
..+...+|..++++|+.++.+-+++.-+.. ++||+++.+.|.+.++
T Consensus 50 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~L~~~Gf 95 (254)
T 3frm_A 50 MNQWLKDIEVQKKMHLNQSSYHLSFSFPAN------EKIDEVLLEKIRELGF 95 (254)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEECCTT------CCCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEcCCC------CCCCHHHHHHHHHcCc
Confidence 455666777999999999887777765432 5568888888887665
No 7
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=26.41 E-value=34 Score=27.44 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=18.1
Q ss_pred ccceeeeCCCCCC-cccCCeeecCCCCCC
Q psy17744 146 DAFIKVARPDGRP-DSLGLTVLDEPCFEQ 173 (326)
Q Consensus 146 DaFiKVpRPDg~~-d~LGL~vLDEP~~~Q 173 (326)
++|+||+|+.+.+ ..=+++.||+=|..+
T Consensus 58 ~~F~kv~r~~~~p~gkg~~W~l~p~~~~~ 86 (100)
T 1kq8_A 58 DCFVKVLRDPSRPWGKDNYWMLNPNSEYT 86 (100)
T ss_dssp TCCEECSSCSCCSSSCCCCEECCC-----
T ss_pred heeeecCCCCCCCCCCCeEEEECcCHHHH
Confidence 6899999987666 344589998765443
No 8
>2rqh_A G1 to S phase transition 1; protein-protein complex, GTP-binding, nucleotide-binding, Al splicing, cytoplasm, methylation, mRNA processing; NMR {Mus musculus}
Probab=25.95 E-value=24 Score=22.59 Aligned_cols=10 Identities=40% Similarity=1.584 Sum_probs=6.6
Q ss_pred ccCCC-----Ccccc
Q psy17744 132 RPFIP-----DYIPA 141 (326)
Q Consensus 132 kPFIP-----DyIPA 141 (326)
|||+| +|+|+
T Consensus 2 KPFVPnv~a~eFvps 16 (26)
T 2rqh_A 2 KPFVPNVHAAEFVPS 16 (26)
T ss_dssp CSSCCCTTCCCSSCC
T ss_pred CCccCcchHHHhhHh
Confidence 78887 45554
No 9
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A
Probab=22.22 E-value=25 Score=29.52 Aligned_cols=70 Identities=9% Similarity=0.302 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHHHhhCCCCCceeecCCCCChHHHHHhhhHHHHHHhhhcC----CCCCCCCCCHHHHHHHHHhhcCCC
Q psy17744 207 NKKAIDRWIKDIGDLHKNKPPPSVHYSRGMPDLDNLMQEWSNDVEQTISEVG----LPPEDLDCDLTTYIDLMAAILDIP 282 (326)
Q Consensus 207 npk~Id~WI~sI~eLHrsKPp~tV~Ys~~MPDId~LMQeWP~e~Ee~L~~~~----lP~a~lD~~L~eYvdiiC~iLDIP 282 (326)
.+..|++..+-=++.=- +...-++|++ +-++|..+. ++..+- +.+.-+|||
T Consensus 38 ~~~dl~~F~~~W~~fDP-~aTg~I~~~~---------------L~~ll~~L~pPLgi~kpnr---------~~L~~mniP 92 (129)
T 2kav_A 38 SEDDFEMFYEVWEKFDP-DATQFIEFAK---------------LSDFADALDPPLLIAKPNK---------VQLIAMDLP 92 (129)
T ss_dssp CHHHHHHHHHHHHHHCT-TCCCEECGGG---------------HHHHHHHSCTTSCCCTTCC---------HHHHHTCCC
T ss_pred CHHHHHHHHHHHHhcCC-CCceEEeHHH---------------HHHHHHhCCccccCCCccH---------HHHHHcCCc
Confidence 45666665554444422 2223556654 566666544 334222 236689999
Q ss_pred CC-CChhhHHHHHHHHHHHH
Q psy17744 283 RF-ESRIETLHVIFSLYAAI 301 (326)
Q Consensus 283 V~-~s~IeSLHvLFsLY~ef 301 (326)
++ +++|+.+-+||+|=-.+
T Consensus 93 l~~g~~Vhf~dvL~ALtr~v 112 (129)
T 2kav_A 93 MVSGDRIHCLDILFAFTKRV 112 (129)
T ss_dssp EETTTEEEHHHHHHHHHHHT
T ss_pred cCCCCEEeHHHHHHHHHHHH
Confidence 97 46999999999986543
No 10
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=20.75 E-value=43 Score=26.06 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=12.9
Q ss_pred ccceeeeCCCCCCcccCCeeec
Q psy17744 146 DAFIKVARPDGRPDSLGLTVLD 167 (326)
Q Consensus 146 DaFiKVpRPDg~~d~LGL~vLD 167 (326)
++|+||||. .+..=+++.||
T Consensus 66 ~~F~Kv~r~--~~GKg~~W~ld 85 (85)
T 3bpy_A 66 SKFIKVHNE--ATGKSSWWMLN 85 (85)
T ss_dssp TTEEEECCC--STTCCCEEEEC
T ss_pred hhheeCCCC--CCCCCCceecC
Confidence 799999984 23344555554
Done!