RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17744
         (326 letters)



>d1otka_ a.25.1.2 (A:) Phenylacetic acid degradation protein PaaC
           {Escherichia coli [TaxId: 562]}
          Length = 244

 Score = 32.9 bits (75), Expect = 0.033
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 209 KAIDRWIKDIGDLHKNKPPPSVHYSRG-MPDLDNLMQEWSNDVEQTISEVGLP-PED 263
           +AI++  +   +L             G   D   L   W  +V   I+E  L  P++
Sbjct: 158 QAINKLWRFTAELFDADEIDIALSEEGIAVDPRTLRAAWEAEVFAGINEATLNVPQE 214


>d1xk4c1 a.39.1.2 (C:4-86) Calcyclin (S100) {Human (Homo sapiens),
           s100a9 (mrp14) [TaxId: 9606]}
          Length = 83

 Score = 28.9 bits (65), Expect = 0.18
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 145 IDAFIKVARPDGRPDSLGLTVLDEPCFEQSDPAILNLQLRQSSKCPTSSKATIIKKVEDA 204
           I+ F + +   G PD+L      E         ++   L+   K    ++  I   +ED 
Sbjct: 13  INTFHQYSVKLGHPDTLNQGEFKE---------LVRKDLQNFLKKENKNEKVIEHIMEDL 63

Query: 205 DKNK 208
           D N 
Sbjct: 64  DTNA 67


>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase
           {Thermus thermophilus [TaxId: 274]}
          Length = 234

 Score = 29.5 bits (65), Expect = 0.42
 Identities = 7/62 (11%), Positives = 16/62 (25%), Gaps = 5/62 (8%)

Query: 170 CFEQSDPAILNLQLRQSSKCPTSSKATI-----IKKVEDADKNKKAIDRWIKDIGDLHKN 224
                D A+     + +      +         + + E  D   + + RW  +       
Sbjct: 167 LLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYAPK 226

Query: 225 KP 226
            P
Sbjct: 227 DP 228


>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 291

 Score = 28.0 bits (62), Expect = 1.5
 Identities = 12/61 (19%), Positives = 19/61 (31%)

Query: 205 DKNKKAIDRWIKDIGDLHKNKPPPSVHYSRGMPDLDNLMQEWSNDVEQTISEVGLPPEDL 264
           D  K   D   + +  L +      V     + +    M EW       + E G+P   L
Sbjct: 66  DNCKLVTDECRRKLLQLKEQYYAIEVDPVLTVEEKFPYMVEWYTKSHGLLIEQGIPKAKL 125

Query: 265 D 265
            
Sbjct: 126 K 126


>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel
           (Mytilus edulis) [TaxId: 6550]}
          Length = 275

 Score = 26.7 bits (58), Expect = 3.7
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 229 SVHYSRGMPDLDNLMQEWSNDVEQTISEVGLPPEDLDCDL 268
           SV    G+ D +        +V + +S+    P  LD D 
Sbjct: 46  SVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADT 85


>d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis
           [TaxId: 1423]}
          Length = 74

 Score = 24.0 bits (52), Expect = 8.5
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 247 SNDVEQTISEV-----GLPPEDLDCDLTTYIDLMAAILDIPRFESRIE 289
           S D  + ++++     G+   D+  + +   DL A  LD+      +E
Sbjct: 1   SADTLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELE 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0453    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,262,324
Number of extensions: 60841
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 8
Length of query: 326
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 240
Effective length of database: 1,226,816
Effective search space: 294435840
Effective search space used: 294435840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.9 bits)