BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17746
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++++TNIAETS+T+ GI YV+D G KQK ++P ++ L V+ IS+A A QR GRAGR
Sbjct: 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 431
Query: 61 AEGFCYRMYSEEDFRR-MNKNTVPEIQRTNXXXXXXXXXXXEINAAT-FDFMDKPPKEIE 118
G C+R+Y+EE F++ + + + PEI R+N I+ FDFMD P E
Sbjct: 432 RPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETM 491
Query: 119 SRQL 122
R L
Sbjct: 492 MRAL 495
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 117 IESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
++ Q V IHPS+ L G E++++ E + TS+ Y++T++ + P W+ E+ P Y
Sbjct: 673 VKDNQDVLIHPSTVL-GHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAY 725
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 99.8 bits (247), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++++TNIAETS+T+ GI YV+D G KQK ++P ++ L V+ IS+A A QR GRAGR
Sbjct: 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 431
Query: 61 AEGFCYRMYSEEDFRR-MNKNTVPEIQRTNXXXXXXXXXXXEINAAT-FDFMDKPPKEIE 118
G C+R+Y+EE F++ + + + PEI R+N I+ FDFMD P E
Sbjct: 432 RPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETM 491
Query: 119 SRQL 122
R L
Sbjct: 492 MRAL 495
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 117 IESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
++ Q V IHPS+ L G E++++ E + TS+ Y++T++ + P W+ E+ P Y
Sbjct: 673 VKDNQDVLIHPSTVL-GHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAY 725
>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain
Length = 270
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 4/63 (6%)
Query: 112 KPPKE----IESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMV 167
K P+E + +Q+V IHPSS+L PE++++ EL+ T++ YM+ ++ IDP W+ E
Sbjct: 184 KDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFA 243
Query: 168 PGY 170
P +
Sbjct: 244 PAF 246
>pdb|2QEQ|A Chain A, Crystal Structure Of Kunjin Virus Ns3 Helicase
pdb|2QEQ|B Chain B, Crystal Structure Of Kunjin Virus Ns3 Helicase
Length = 434
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVL-QVTSISQAQAWQRTGRAGR 59
++ T+I+E + + VK G G +L + ++++ A A QR GR GR
Sbjct: 220 FVVTTDISEMGANFKASRVIDSRKSVKPTIITEGEGRVILGEPSAVTAASAAQRRGRTGR 279
Query: 60 E----AEGFCYRMYSEED 73
+ +CY ++ ED
Sbjct: 280 NPSQAGDEYCYGGHTNED 297
>pdb|2V8O|A Chain A, Structure Of The Murray Valley Encephalitis Virus Rna
Helicase To 1.9a Resolution
Length = 444
Score = 26.6 bits (57), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 1 IILATNIAETSITVPGIKYVIDS-GLVKQKTHHPGTGLDVLQV-TSISQAQAWQRTGRAG 58
++ T+I+E G VID VK G G +L V ++I+ A A QR GR G
Sbjct: 230 FVITTDISEMGANF-GASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVG 288
Query: 59 R 59
R
Sbjct: 289 R 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,982,161
Number of Sequences: 62578
Number of extensions: 167719
Number of successful extensions: 342
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 8
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)