BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17746
(182 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q80VY9|DHX33_MOUSE Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33
PE=1 SV=1
Length = 698
Score = 156 bits (394), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 72/121 (59%), Positives = 95/121 (78%), Gaps = 2/121 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+I++TNIAETSIT+ GIKYV+D+G+VK K ++P +GL+VL V +S+ QAWQRTGRAGRE
Sbjct: 341 VIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRTGRAGRE 400
Query: 61 AEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKP-PKEIE 118
G CYR+Y+E++F + K TVPEIQR NLAS L LL++++ N TFDFM KP P IE
Sbjct: 401 DSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVILQLLAMKVPNVLTFDFMSKPSPDHIE 460
Query: 119 S 119
+
Sbjct: 461 A 461
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 118 ESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
++ Q V+IHPSS L P +++T LL T++CYM+ L V+D W+ E P Y
Sbjct: 636 DTHQPVAIHPSSVLFHCKPACVVYTSLLYTNKCYMRDLCVVDAEWLYEAAPDY 688
>sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33
PE=1 SV=2
Length = 707
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 96/121 (79%), Gaps = 2/121 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+I++TNIAETSIT+ GIKYV+D+G+VK K ++P +GL+VL V +S+ QAWQRTGRAGRE
Sbjct: 350 VIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRTGRAGRE 409
Query: 61 AEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKP-PKEIE 118
G CYR+Y+E++F + +K TVPEIQR NLAS L LL++++ N TFDFM KP P I+
Sbjct: 410 DSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKPSPDHIQ 469
Query: 119 S 119
+
Sbjct: 470 A 470
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 118 ESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
++ Q V+IHPSS L P +++TELL T++CYM+ L VID W+ E P Y
Sbjct: 645 DTHQPVAIHPSSVLFHCKPACVVYTELLYTNKCYMRDLCVIDAQWLYEAAPEY 697
>sp|Q09530|MOG5_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5
OS=Caenorhabditis elegans GN=mog-5 PE=1 SV=1
Length = 1200
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 93/136 (68%), Gaps = 2/136 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+++ATNIAETS+T+ GI YV+D G VKQK ++P +G+D L VT ISQA A QR+GRAGR
Sbjct: 810 VVIATNIAETSLTIDGIFYVVDPGFVKQKIYNPKSGMDSLVVTPISQAAAKQRSGRAGRT 869
Query: 61 AEGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEINA-ATFDFMDKPPKEIE 118
G CYR+Y+E FR M VPEIQRTNLAST L L ++ IN FDFMD PP +
Sbjct: 870 GPGKCYRLYTERAFRDEMLPTPVPEIQRTNLASTLLQLKAMGINNLIDFDFMDAPPLDSM 929
Query: 119 SRQLVSIHPSSSLAGS 134
L ++H S+L G
Sbjct: 930 ITALNTLHTLSALDGD 945
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 121 QLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
Q V IHPSS+ PE++++ EL+ T++ YM+ ++ IDP W+ E P +
Sbjct: 1106 QNVYIHPSSACFQQQPEWVVYHELVMTTKEYMREVTAIDPKWLVEFAPSF 1155
>sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1
Length = 1220
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 103/167 (61%), Gaps = 14/167 (8%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+++ATNIAETS+T+ GI YV+D G VKQK ++ TG+D L VT ISQAQA QR GRAGR
Sbjct: 835 VVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRT 894
Query: 61 AEGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEINA-ATFDFMDKPPKEIE 118
G CYR+Y+E +R M VPEIQRTNLAST L+L ++ IN +FDFMD PP E
Sbjct: 895 GPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMET- 953
Query: 119 SRQLVSIHPSSSLAGSLPEYILFTEL--------LQTSRCYMKTLSV 157
L++ G+L + L T L L+ C M +SV
Sbjct: 954 ---LITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSV 997
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 119 SRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGYAAQHRIVT 178
+Q+V IHPSS+L PE++++ EL+ T++ YM+ ++ IDP W+ E P + V+
Sbjct: 1129 DQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFK----VS 1184
Query: 179 DPTS 182
DPT
Sbjct: 1185 DPTK 1188
>sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1
Length = 1244
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 103/167 (61%), Gaps = 14/167 (8%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+++ATNIAETS+T+ GI YV+D G VKQK ++ TG+D L VT ISQAQA QR GRAGR
Sbjct: 859 VVIATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRT 918
Query: 61 AEGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEINA-ATFDFMDKPPKEIE 118
G CYR+Y+E +R M VPEIQRTNLAST L+L ++ IN +FDFMD PP E
Sbjct: 919 GPGKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMET- 977
Query: 119 SRQLVSIHPSSSLAGSLPEYILFTEL--------LQTSRCYMKTLSV 157
L++ G+L + L T L L+ C M +SV
Sbjct: 978 ---LITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSV 1021
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 119 SRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGYAAQHRIVT 178
+Q+V IHPSS+L PE++++ EL+ T++ YM+ ++ IDP W+ E P + V+
Sbjct: 1153 DQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFK----VS 1208
Query: 179 DPTS 182
DPT
Sbjct: 1209 DPTK 1212
>sp|P0CE10|Y4102_ARATH Putative uncharacterized protein At4g01020, chloroplastic
OS=Arabidopsis thaliana GN=At4g01020 PE=4 SV=1
Length = 1787
Score = 133 bits (335), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 98/157 (62%), Gaps = 11/157 (7%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+I ATNIAETS+T+PG+KYVIDSG+VK+ + P TG+ +L+V +SQ+ A QR GRAGR
Sbjct: 573 VIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCQVSQSSARQRAGRAGRT 632
Query: 61 AEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKE--- 116
G CYR+YS+ DF MN N PEI+R +L L +L+L I N A F+F+D P E
Sbjct: 633 EPGRCYRLYSKTDFDSMNLNQEPEIRRVHLGVALLRMLALGIDNIAAFEFVDAPVPEAIA 692
Query: 117 IESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMK 153
+ + LV + G++ E EL Q C +K
Sbjct: 693 MAIQNLVQL-------GAVVEKNGVLELTQEGHCLVK 722
>sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8
PE=3 SV=1
Length = 1160
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/146 (50%), Positives = 93/146 (63%), Gaps = 6/146 (4%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+++ATNIAETS+T+ GI YVID G KQK +P G+D L V ISQA A QR+GRAGR
Sbjct: 778 VVIATNIAETSLTIDGIYYVIDPGFSKQKCFNPKNGMDSLVVAPISQAAARQRSGRAGRT 837
Query: 61 AEGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEINA-ATFDFMDKPPKEIE 118
G CYR+Y+E F+ M +++PEIQRTNL +T LT+ ++ IN FDFMD PP +
Sbjct: 838 GPGKCYRLYTESAFKNEMLASSIPEIQRTNLGNTVLTMKAMGINDLLNFDFMDPPPVQT- 896
Query: 119 SRQLVSIHPSSSLAGSLPEYILFTEL 144
LVS G+L E L T L
Sbjct: 897 ---LVSAMEQLYSLGALDEEGLLTRL 919
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 34/50 (68%)
Query: 121 QLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
Q V IHPSS+L P+++++ EL+ T++ YM+ + IDP W+ E+ P +
Sbjct: 1074 QPVYIHPSSTLFNRNPDWVIYHELVMTTKEYMREVCTIDPKWLVELAPKF 1123
>sp|Q9P774|PRP16_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp16 PE=3 SV=2
Length = 1173
Score = 127 bits (319), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 64/118 (54%), Positives = 84/118 (71%), Gaps = 2/118 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+++ATNIAETS+TV GI YV+D+G K K ++ G+D LQVT ISQA A QR GRAGR
Sbjct: 761 VVVATNIAETSLTVHGISYVVDTGYCKLKMYNSKLGIDTLQVTPISQANANQRAGRAGRT 820
Query: 61 AEGFCYRMYSEEDF-RRMNKNTVPEIQRTNLASTALTLLSLEINA-ATFDFMDKPPKE 116
G YR+Y+E + R M + T+PEIQRTNL++T L L SL + + FDFMD+PP +
Sbjct: 821 GPGIAYRLYTEMAYIREMFETTLPEIQRTNLSNTVLILKSLGVEEISDFDFMDRPPND 878
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 125 IHPSSSL--AGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEM 166
+H +SSL G LP+Y+++ EL+ TS+ YM ++ +DP W+ E
Sbjct: 1060 LHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPYWLAEF 1103
>sp|O42643|PRP22_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp22 PE=1 SV=1
Length = 1168
Score = 127 bits (318), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 88/133 (66%), Gaps = 2/133 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+++ATNIAETS+T+ GI YV+D G VKQ P G+D L VT ISQAQA QR+GRAGR
Sbjct: 781 VVIATNIAETSLTIDGIYYVVDPGFVKQSCFDPKLGMDSLIVTPISQAQARQRSGRAGRT 840
Query: 61 AEGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEINA-ATFDFMDKPPKEIE 118
G CYR+Y+E +R M + +PEIQR NL+ T L L ++ IN FDFMD PP +
Sbjct: 841 GPGKCYRLYTESAYRNEMLPSPIPEIQRQNLSHTILMLKAMGINDLLNFDFMDPPPAQTM 900
Query: 119 SRQLVSIHPSSSL 131
L +++ S+L
Sbjct: 901 IAALQNLYALSAL 913
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 103 NAATFDFMDKPPKEIESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAW 162
N A D + K I V +HPS L G E++++ EL+QTS+ YM T+S ++P W
Sbjct: 1060 NVAKRDSHEGCYKTIVENAPVYMHPSGVLFGKAAEWVIYHELIQTSKEYMHTVSTVNPKW 1119
Query: 163 ITEMVPGY 170
+ E+ P +
Sbjct: 1120 LVEVAPTF 1127
>sp|P34498|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1
OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2
Length = 1131
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 82/117 (70%), Gaps = 2/117 (1%)
Query: 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA 61
I+ATNIAETS+TV GI +VID G K K ++P G+D L + +SQA A QRTGRAGR
Sbjct: 712 IVATNIAETSLTVDGILFVIDPGFCKMKVYNPRIGMDALSIFPVSQASANQRTGRAGRTG 771
Query: 62 EGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEINA-ATFDFMDKPPKE 116
G CYR+Y+E F+ + K+TVPEIQRTNLA+ L L SL ++ F FMD PP++
Sbjct: 772 PGQCYRLYTERQFKDELLKSTVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQD 828
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 125 IHPSSSL--AGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
+HP+S+L G +P+Y+++ EL+ T++ YM+ ++ +D W+ E+ P +
Sbjct: 1011 LHPTSALFGMGFMPDYVVYHELIMTAKEYMQCVTAVDAIWLAELGPMF 1058
>sp|P24384|PRP22_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP22 PE=1 SV=1
Length = 1145
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 85/133 (63%), Gaps = 2/133 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++ ATNIAETSIT+ GI YV+D G K ++ G++ L V+ ISQAQA QR GRAGR
Sbjct: 753 VVFATNIAETSITIDGIYYVVDPGFAKINIYNARAGIEQLIVSPISQAQANQRKGRAGRT 812
Query: 61 AEGFCYRMYSEEDF-RRMNKNTVPEIQRTNLASTALTLLSLEINA-ATFDFMDKPPKEIE 118
G CYR+Y+E F M +NTVPEIQR NL+ T L L ++ IN FDFMD PPK +
Sbjct: 813 GPGKCYRLYTESAFYNEMLENTVPEIQRQNLSHTILMLKAMGINDLLKFDFMDPPPKNLM 872
Query: 119 SRQLVSIHPSSSL 131
L ++ SL
Sbjct: 873 LNALTELYHLQSL 885
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 123 VSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
V IHPSSSL G EY+++ ++ TSR YM ++ I+P W+ E+ P +
Sbjct: 1051 VGIHPSSSLYGKEYEYVMYHSIVLTSREYMSQVTSIEPQWLLEVAPHF 1098
>sp|Q03319|PRH1_SCHPO Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=prh1 PE=3 SV=2
Length = 719
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 88/132 (66%), Gaps = 1/132 (0%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++L+TNIAETS+T+ GI+YVID+GL K K + GL+ L V ISQ+ A QR+GRAGRE
Sbjct: 366 VVLSTNIAETSVTISGIRYVIDTGLAKIKQFNSKLGLESLTVQPISQSAAMQRSGRAGRE 425
Query: 61 AEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEIN-AATFDFMDKPPKEIES 119
A G CYR+Y+E DF ++ K T+PEI+R +L+ LTL + N F +MD P KE
Sbjct: 426 AAGQCYRIYTEADFDKLPKETIPEIKRIDLSQAVLTLKARGQNDVINFHYMDPPSKEGLL 485
Query: 120 RQLVSIHPSSSL 131
R L ++ +L
Sbjct: 486 RALEHLYSIGAL 497
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 80 NTVPEIQRTNLASTALTLLSLEINAATFDFMDKPPKEIESRQLVSIHPSSSLAGSLPEYI 139
N+ PE+ NL L+ LS I D + I Q +SIHPSSSL G E I
Sbjct: 626 NSSPEVNSENLL---LSFLSGYITNTALLHPDGSYRTIIGNQTISIHPSSSLFGKKVEAI 682
Query: 140 LFTELLQTSRCYMKTLSVIDPAWITEMVPGYAAQ 173
++ EL+ T++ Y++ +S I W+ + P Y A+
Sbjct: 683 MYHELVFTTKSYVRGVSSIRSNWLNAVAPHYLAR 716
>sp|Q54MH3|DHX16_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1
Length = 1106
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 81/116 (69%), Gaps = 2/116 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++LATNIAETS+T+ GI YVID G KQK +P TG++ L +T +S+A A QR GRAGR
Sbjct: 737 VVLATNIAETSLTIDGIIYVIDPGFCKQKMFNPRTGMESLVITPVSRASANQRKGRAGRV 796
Query: 61 AEGFCYRMYSEEDF-RRMNKNTVPEIQRTNLASTALTLLSLEINA-ATFDFMDKPP 114
A G C+R+++ F + +NT+PEIQRTNL + L L S+ IN FDFMD PP
Sbjct: 797 APGKCFRLFTAWAFDNELEENTIPEIQRTNLGNVVLLLKSMGINDLMNFDFMDPPP 852
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 121 QLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVP 168
Q V IHPSS L S P+++++ EL+ T++ +M+ + I +W+ E+ P
Sbjct: 1034 QSVQIHPSSCLFQSPPKWVVYHELVLTTKEFMRQIVEIQSSWLHEIAP 1081
>sp|Q5RBD4|DHX35_PONAB Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35
PE=2 SV=1
Length = 720
Score = 123 bits (309), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 80/117 (68%), Gaps = 1/117 (0%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+I+ATN+AETSIT+ GI YVID G VK + ++P T ++ L V +SQA A QR GR GR
Sbjct: 338 VIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRAGRGGRS 397
Query: 61 AEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKE 116
G CYR+Y+EE F ++ ++TVPE+QR+NLA L L +L I N F FM PP +
Sbjct: 398 RSGKCYRLYTEEAFDKLPQSTVPEMQRSNLAPVILQLKALGIDNVLRFHFMSPPPAQ 454
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 115 KEIESRQLVSIHPSSSL-AGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGYAAQ 173
+ I + IHP+S L A P ++++ E++QTS+ YM+ ++ I+ AW+ E+ P + Q
Sbjct: 628 RTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQTSKYYMRDVTAIESAWLLELAPHFYQQ 687
>sp|Q9H5Z1|DHX35_HUMAN Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35
PE=1 SV=2
Length = 703
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 80/117 (68%), Gaps = 1/117 (0%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+I+ATN+AETSIT+ GI YVID G VK + ++P T ++ L V +SQA A QR GR GR
Sbjct: 338 VIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRAGRGGRS 397
Query: 61 AEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKE 116
G CYR+Y+EE F ++ ++TVPE+QR+NLA L L +L I N F FM PP +
Sbjct: 398 RSGKCYRLYTEEAFDKLPQSTVPEMQRSNLAPVILQLKALGIDNVLRFHFMSPPPAQ 454
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 115 KEIESRQLVSIHPSSSL-AGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGYAAQ 173
+ I + IHP+S L A P ++++ E++QTS+ YM+ ++ I+ AW+ E+ P + Q
Sbjct: 628 RTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQTSKYYMRDVTAIESAWLLELAPHFYQQ 687
>sp|Q38953|DHX8_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2
Length = 1168
Score = 122 bits (306), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 91/146 (62%), Gaps = 6/146 (4%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+++ATNIAE S+T+ GI YV+D G KQ ++P GL+ L +T ISQA A QR GRAGR
Sbjct: 785 VVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQRAGRAGRT 844
Query: 61 AEGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEINA-ATFDFMDKPPKEIE 118
G CYR+Y+E +R M ++PEIQR NL T LT+ ++ IN +FDFMD P +
Sbjct: 845 GPGKCYRLYTESAYRNEMPPTSIPEIQRINLGMTTLTMKAMGINDLLSFDFMDPP----Q 900
Query: 119 SRQLVSIHPSSSLAGSLPEYILFTEL 144
+ L+S G+L E L T+L
Sbjct: 901 PQALISAMEQLYSLGALDEEGLLTKL 926
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 121 QLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGYAAQHRIVTDP 180
Q V IHPSS+L P+++++ +L+ T++ YM+ ++VIDP W+ E+ P + V+DP
Sbjct: 1081 QPVYIHPSSALFQRQPDWVIYHDLVMTTKEYMREVTVIDPKWLVELAPRFFK----VSDP 1136
Query: 181 TS 182
T
Sbjct: 1137 TK 1138
>sp|Q9BKQ8|DHX35_CAEEL Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis
elegans GN=Y67D2.6 PE=3 SV=1
Length = 732
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 76/115 (66%), Gaps = 1/115 (0%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+++ATNIAE SIT+PGI YVID+G VK + H G++ L ++S+A A QR GRAGR
Sbjct: 357 VVVATNIAEASITIPGICYVIDTGYVKLRAQHAANGVETLMRVTVSKASAEQRAGRAGRI 416
Query: 61 AEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPP 114
G CYR+Y E +F R + TVPEIQR +AST L L +L + N F ++ PP
Sbjct: 417 RPGKCYRLYPESEFERFAEGTVPEIQRCQMASTILQLKALGVQNVHRFHYLSPPP 471
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Query: 136 PEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
P++++FTE++Q S ++ ++VI+P W+ E+ P Y
Sbjct: 673 PKWVIFTEVMQDS---IRDVTVIEPEWLYELAPHY 704
>sp|Q10752|CDC28_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
cdc28 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cdc28 PE=3 SV=2
Length = 1055
Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 80/124 (64%), Gaps = 2/124 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++LATNIAETSIT+ G+ +VIDSG VKQ ++P TG++ L S+A A QR GRAGR
Sbjct: 689 VVLATNIAETSITIDGVNFVIDSGFVKQNMYNPRTGMESLVSVPCSRASADQRAGRAGRV 748
Query: 61 AEGFCYRMYSEEDF-RRMNKNTVPEIQRTNLASTALTLLSLEINA-ATFDFMDKPPKEIE 118
G C+R+Y+ + ++ T PEIQRTNL + L L SL IN FDFMD PP E
Sbjct: 749 GPGKCFRLYTRRTYNNELDMVTSPEIQRTNLTNIVLLLKSLGINNLLDFDFMDAPPPETL 808
Query: 119 SRQL 122
R L
Sbjct: 809 MRSL 812
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 103 NAATFDFMDKPPKEIESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAW 162
NAA D + ++S Q V IHPSSS+A P+ I++ EL+ T++ Y + ++ I P W
Sbjct: 970 NAARLDRSGDSYRTVKSNQTVYIHPSSSVAEKKPKVIIYFELVLTTKEYCRQITEIQPEW 1029
Query: 163 ITEMVPGY 170
+ E+ P Y
Sbjct: 1030 LLEISPHY 1037
>sp|Q92620|PRP16_HUMAN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo
sapiens GN=DHX38 PE=1 SV=2
Length = 1227
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 81/117 (69%), Gaps = 2/117 (1%)
Query: 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA 61
I+ATNIAETS+TV GI +VIDSG K K +P G+D LQ+ ISQA A QR+GRAGR
Sbjct: 802 IVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTG 861
Query: 62 EGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKE 116
G C+R+Y++ ++ + TVPEIQRTNLA+ L L SL + + F FMD PP++
Sbjct: 862 PGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPED 918
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 125 IHPSSSL--AGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
+HP+SSL G P+YI++ EL+ T++ YM+ ++ +D W+ E+ P +
Sbjct: 1101 LHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMF 1148
>sp|Q17R09|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos
taurus GN=DHX38 PE=2 SV=1
Length = 1227
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 81/117 (69%), Gaps = 2/117 (1%)
Query: 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA 61
I+ATNIAETS+TV GI +VIDSG K K +P G+D LQ+ ISQA A QR+GRAGR
Sbjct: 802 IVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRSGRAGRTG 861
Query: 62 EGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKE 116
G C+R+Y++ ++ + TVPEIQRTNLA+ L L SL + + F FMD PP++
Sbjct: 862 PGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKSLGVQDLLQFHFMDPPPED 918
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 125 IHPSSSL--AGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
+HP+SSL G P+YI++ EL+ T++ YM+ ++ +D W+ E+ P +
Sbjct: 1101 LHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMF 1148
>sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Pan troglodytes GN=DHX16 PE=3 SV=1
Length = 1044
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+++ATNIAETS+T+ GI YV+D G KQK+++P TG++ L VT S+A A QR GRAGR
Sbjct: 673 VVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRV 732
Query: 61 AEGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKE 116
A G C+R+Y+ ++ + + TVPEIQRT+L + L L SL I + FDF+D PP E
Sbjct: 733 AAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYE 790
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 36/54 (66%)
Query: 117 IESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
++ +Q V IHP+SSL P ++L+ EL+ T++ +M+ + I+ +W+ E+ P Y
Sbjct: 965 VKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHY 1018
>sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Homo sapiens GN=DHX16 PE=1 SV=2
Length = 1041
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+++ATNIAETS+T+ GI YV+D G KQK+++P TG++ L VT S+A A QR GRAGR
Sbjct: 670 VVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRV 729
Query: 61 AEGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKE 116
A G C+R+Y+ ++ + + TVPEIQRT+L + L L SL I + FDF+D PP E
Sbjct: 730 AAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYE 787
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 36/54 (66%)
Query: 117 IESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
++ +Q V IHP+SSL P ++L+ EL+ T++ +M+ + I+ +W+ E+ P Y
Sbjct: 962 VKQQQTVFIHPNSSLFEQQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHY 1015
>sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
OS=Sus scrofa GN=DHX16 PE=3 SV=1
Length = 1045
Score = 117 bits (292), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 83/118 (70%), Gaps = 2/118 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+++ATNIAETS+T+ GI YV+D G KQK+++P TG++ L VT S+A A QR GRAGR
Sbjct: 674 VVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKASANQRAGRAGRV 733
Query: 61 AEGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKE 116
A G C+R+Y+ ++ + + TVPEIQRT+L + L L SL I + FDF+D PP E
Sbjct: 734 AAGKCFRLYTAWAYQHELEETTVPEIQRTSLGNVVLLLKSLGIHDLMHFDFLDPPPYE 791
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 36/54 (66%)
Query: 117 IESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
++ +Q V IHP+SSL P ++L+ EL+ T++ +M+ + I+ +W+ E+ P Y
Sbjct: 966 VKQQQTVFIHPNSSLFEEQPRWLLYHELVLTTKEFMRQVLEIESSWLLEVAPHY 1019
>sp|O22899|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1
Length = 729
Score = 115 bits (288), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/124 (50%), Positives = 82/124 (66%), Gaps = 2/124 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
I+++TNIAETS+T+ GI YVID G KQK ++P ++ L V+ IS+A A QR+GRAGR
Sbjct: 348 IVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRT 407
Query: 61 AEGFCYRMYSEEDFRR-MNKNTVPEIQRTNLASTALTLLSLEINAAT-FDFMDKPPKEIE 118
G C+R+Y+E+ F + T PEI R+NLA+T LTL L I+ FDFMD P E
Sbjct: 408 RPGKCFRLYTEKSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETL 467
Query: 119 SRQL 122
R L
Sbjct: 468 MRAL 471
Score = 38.5 bits (88), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 117 IESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
++ Q+V +HPS+ L PE++++ E + T+R +++T++ I W+ ++ Y
Sbjct: 644 VKDNQVVHLHPSNCLDHK-PEWVIYNEYVLTTRNFIRTVTDIRGEWLVDVAQHY 696
>sp|Q6PE54|DHX40_MOUSE Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40
PE=2 SV=1
Length = 779
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 84/117 (71%), Gaps = 3/117 (2%)
Query: 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA 61
+++TNI+ TS+T+ GI+YV+D G VKQ H+P GLD+L+V IS+++A QR+GRAGR A
Sbjct: 342 VISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTA 401
Query: 62 EGFCYRMYSEEDFRR-MNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKE 116
G C+R+YS+E + + M + +PEI+RT+L S LTL L I + F ++D PP E
Sbjct: 402 SGKCFRIYSKEFWSQCMPDHVIPEIKRTSLTSVVLTLKCLAIHDVIRFPYLD-PPNE 457
Score = 35.0 bits (79), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 123 VSIHPSSSL--AGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVP 168
V IHPSS+L + E+I+F E+L T++ Y + + I W+ +++P
Sbjct: 650 VHIHPSSALHEQETKLEWIIFHEVLVTTKVYARIVCPIRYEWVRDLLP 697
>sp|O42945|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp43 PE=3 SV=1
Length = 735
Score = 114 bits (285), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++++TNIAETS+T+ GI YV+D G KQK ++P ++ L V+ IS+A A QR GRAGR
Sbjct: 354 VVISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGRT 413
Query: 61 AEGFCYRMYSEEDFRR-MNKNTVPEIQRTNLASTALTLLSLEINAAT-FDFMDKPPKEIE 118
G C+R+Y+EE FR+ + + T PEI R+NL+ST L L L I+ FD+MD P E
Sbjct: 414 RPGKCFRLYTEEAFRKELIEQTYPEILRSNLSSTVLELKKLGIDDLVHFDYMDPPAPETM 473
Query: 119 SRQLVSIH 126
R L ++
Sbjct: 474 MRALEELN 481
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 117 IESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
++ Q+VS+HPS L+ + PE++++ E + T++ +++ ++ I P W+ E+ P Y
Sbjct: 651 MKDNQVVSLHPSCGLSVT-PEWVVYNEFVLTTKSFIRNVTAIRPEWLIELAPNY 703
>sp|O35286|DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Mus musculus GN=Dhx15 PE=2 SV=2
Length = 795
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 81/124 (65%), Gaps = 2/124 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++++TNIAETS+T+ G+ +VID G KQK ++P ++ L VT+IS+A A QR GRAGR
Sbjct: 417 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRT 476
Query: 61 AEGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEINAAT-FDFMDKPPKEIE 118
G C+R+Y+E+ ++ M NT PEI R+NL S L L L I+ FDFMD P E
Sbjct: 477 RPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETL 536
Query: 119 SRQL 122
R L
Sbjct: 537 MRAL 540
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 117 IESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
++ Q+V +HPS+ L PE++L+ E + T++ Y++T + I P W+ ++ P Y
Sbjct: 713 VKDNQVVQLHPSTVLDHK-PEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQY 765
>sp|Q5RAZ4|DHX15_PONAB Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Pongo abelii GN=DHX15 PE=2 SV=2
Length = 795
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 81/124 (65%), Gaps = 2/124 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++++TNIAETS+T+ G+ +VID G KQK ++P ++ L VT+IS+A A QR GRAGR
Sbjct: 417 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRT 476
Query: 61 AEGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEINAAT-FDFMDKPPKEIE 118
G C+R+Y+E+ ++ M NT PEI R+NL S L L L I+ FDFMD P E
Sbjct: 477 RPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETL 536
Query: 119 SRQL 122
R L
Sbjct: 537 MRAL 540
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 117 IESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
++ Q+V +HPS+ L PE++L+ E + T++ Y++T + I P W+ ++ P Y
Sbjct: 713 VKDNQVVQLHPSTVLDHK-PEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQY 765
>sp|O43143|DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
OS=Homo sapiens GN=DHX15 PE=1 SV=2
Length = 795
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 81/124 (65%), Gaps = 2/124 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++++TNIAETS+T+ G+ +VID G KQK ++P ++ L VT+IS+A A QR GRAGR
Sbjct: 417 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRT 476
Query: 61 AEGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEINAAT-FDFMDKPPKEIE 118
G C+R+Y+E+ ++ M NT PEI R+NL S L L L I+ FDFMD P E
Sbjct: 477 RPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETL 536
Query: 119 SRQL 122
R L
Sbjct: 537 MRAL 540
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 117 IESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
++ Q+V +HPS+ L PE++L+ E + T++ Y++T + I P W+ ++ P Y
Sbjct: 713 VKDNQVVQLHPSTVLDHK-PEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQY 765
>sp|Q5XI69|DHX40_RAT Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus
GN=Dhx40 PE=2 SV=1
Length = 779
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 84/117 (71%), Gaps = 3/117 (2%)
Query: 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA 61
+++TNI+ TS+T+ GI+YV+D G VKQ H+P GLD+L+V IS+++A QR+GRAGR A
Sbjct: 342 VISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTA 401
Query: 62 EGFCYRMYSEEDFRR-MNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKE 116
G C+R+YS++ + + M + +PEI+RT+L S LTL L I + F ++D PP E
Sbjct: 402 SGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCLAIHDVIRFPYLD-PPNE 457
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 123 VSIHPSSSL--AGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVP 168
V IHPSS+L + E+I+F E+L T++ Y + + I W+ +++P
Sbjct: 650 VHIHPSSALHEQETKLEWIIFHEVLVTTKVYARIVCPIRYEWVRDLLP 697
>sp|Q5R864|DHX40_PONAB Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40
PE=2 SV=1
Length = 779
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/117 (47%), Positives = 84/117 (71%), Gaps = 3/117 (2%)
Query: 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA 61
+++TNI+ TS+T+ GI+YV+D G VKQ H+P GLD+L+V IS+++A QR+GRAGR A
Sbjct: 342 VISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTA 401
Query: 62 EGFCYRMYSEEDFRR-MNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKE 116
G C+R+YS++ + + M + +PEI+RT+L S LTL L I + F ++D PP E
Sbjct: 402 SGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCLAIHDVIRFPYLD-PPNE 457
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 123 VSIHPSSSL--AGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVP 168
V IHPSS+L + E+I+F E+L T++ Y + + I W+ +++P
Sbjct: 650 VHIHPSSALHEQETKLEWIVFHEVLVTTKVYARIVCPIRYEWVRDLLP 697
>sp|O45244|DHX16_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4
OS=Caenorhabditis elegans GN=mog-4 PE=1 SV=2
Length = 1008
Score = 113 bits (283), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 79/118 (66%), Gaps = 2/118 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++LATNIAETS+T+ GI YVID G KQ + +G++ L V +IS+A A QR GRAGR
Sbjct: 636 VVLATNIAETSVTIDGINYVIDPGFSKQNSFDARSGVEHLHVVTISKAAANQRAGRAGRT 695
Query: 61 AEGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKE 116
G C+R+Y+ ++ + + +PEIQRTNL + L L SL I + FDF+D PP+E
Sbjct: 696 GPGKCFRLYTAWAYKHELEEQPIPEIQRTNLGNVVLMLKSLGIHDLVHFDFLDPPPQE 753
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 115 KEIESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
K ++ + HP+S L P ++++ EL+ TS+ +M+ +S I+ W+ E+ P Y
Sbjct: 926 KTVKHKHTTHPHPNSCLFEETPRWVVYFELVFTSKEFMREMSEIESGWLLEVAPHY 981
>sp|Q54NJ4|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15
OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1
Length = 727
Score = 112 bits (281), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/127 (48%), Positives = 84/127 (66%), Gaps = 2/127 (1%)
Query: 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA 61
I++TNIAETS+T+ GI +V+D G KQKT++P + ++ L V IS+A A QR GRAGR
Sbjct: 345 IVSTNIAETSLTIDGIVFVVDPGFSKQKTYNPRSRVESLLVAPISKASANQRAGRAGRTR 404
Query: 62 EGFCYRMYSEEDFRR-MNKNTVPEIQRTNLASTALTLLSLE-INAATFDFMDKPPKEIES 119
G C+R+Y+E+ F+ M + T PEI R+NLAS L LL L ++ FDFMD P +
Sbjct: 405 PGKCFRLYTEKAFKELMIQQTHPEILRSNLASVVLQLLKLGVVDLVHFDFMDPPVPDTLI 464
Query: 120 RQLVSIH 126
R L +H
Sbjct: 465 RALEVLH 471
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 121 QLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGYAAQ 173
Q V HPS+ L PE+ ++ E + TS Y++T++ + W+ E+ P Y Q
Sbjct: 644 QSVIFHPSTGLTRR-PEFCIYNEFVLTSENYIRTITDVKFDWLLELAPSYFKQ 695
>sp|Q8IX18|DHX40_HUMAN Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40
PE=1 SV=2
Length = 779
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 84/117 (71%), Gaps = 3/117 (2%)
Query: 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA 61
+++TNI+ TS+T+ GI+YV+D G VKQ H+P GLD+L+V IS+++A QR+GRAGR +
Sbjct: 342 VISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRSGRAGRTS 401
Query: 62 EGFCYRMYSEEDFRR-MNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKE 116
G C+R+YS++ + + M + +PEI+RT+L S LTL L I + F ++D PP E
Sbjct: 402 SGKCFRIYSKDFWNQCMPDHVIPEIKRTSLTSVVLTLKCLAIHDVIRFPYLD-PPNE 457
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 123 VSIHPSSSL--AGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVP 168
V IHPSS+L + E+I+F E+L T++ Y + + I W+ +++P
Sbjct: 650 VHIHPSSALHEQETKLEWIIFHEVLVTTKVYARIVCPIRYEWVRDLLP 697
>sp|P53131|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP43 PE=1 SV=1
Length = 767
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/128 (46%), Positives = 85/128 (66%), Gaps = 2/128 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++++TNIAETS+T+ GI YV+D G KQK ++P ++ L V+ IS+A A QR GRAGR
Sbjct: 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 431
Query: 61 AEGFCYRMYSEEDFRR-MNKNTVPEIQRTNLASTALTLLSLEINAAT-FDFMDKPPKEIE 118
G C+R+Y+EE F++ + + + PEI R+NL+ST L L L I+ FDFMD P E
Sbjct: 432 RPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETM 491
Query: 119 SRQLVSIH 126
R L ++
Sbjct: 492 MRALEELN 499
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 117 IESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
++ Q V IHPS+ L G E++++ E + TS+ Y++T++ + P W+ E+ P Y
Sbjct: 673 VKDNQDVLIHPSTVL-GHDAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAY 725
>sp|O17438|DHX15_STRPU Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
(Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2
SV=1
Length = 455
Score = 110 bits (274), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 79/124 (63%), Gaps = 2/124 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++++TNIAETS+T+ G+ +VID G KQK ++P ++ L V+ IS+A A QR GRAGR
Sbjct: 185 VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVSPISKASAQQRVGRAGRT 244
Query: 61 AEGFCYRMYSEEDF-RRMNKNTVPEIQRTNLASTALTLLSLEINAAT-FDFMDKPPKEIE 118
G C+R+Y+E+ + M NT PEI R+NL + L L L I+ FDFMD P E
Sbjct: 245 RPGKCFRLYTEKAYDSEMQDNTYPEILRSNLGTVVLQLKKLGIDDLVHFDFMDPPAPETL 304
Query: 119 SRQL 122
R L
Sbjct: 305 MRAL 308
>sp|P15938|PRP16_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PRP16 PE=1 SV=2
Length = 1071
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 85/117 (72%), Gaps = 3/117 (2%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
II+ATNIAETS+T+ GI+YVID G K K ++P GLD L +T IS+A A QR+GRAGR
Sbjct: 634 IIIATNIAETSLTIKGIRYVIDCGYSKLKVYNPKIGLDSLVITPISKANADQRSGRAGRT 693
Query: 61 AEGFCYRMYSEEDFRR-MNKNTVPEIQRTNLASTALTLLSLEI--NAATFDFMDKPP 114
A G YR+Y+E+ F+ M T+PEIQRTNL++T L L SL++ + F F+DKPP
Sbjct: 694 APGTAYRLYTEDTFKEDMYLQTIPEIQRTNLSNTLLLLKSLDVTDELSKFPFIDKPP 750
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 123 VSIHPSSSL--AGSLPEYILFTELLQTSRCYMKTLSVIDPAWITE 165
V +HP+S+L G LP Y+++ ELL TS+ Y+ ++ +DP W+ E
Sbjct: 933 VQLHPTSALHGLGDLPPYVVYHELLMTSKEYICCVTSVDPFWLME 977
>sp|P43329|HRPA_ECOLI ATP-dependent RNA helicase HrpA OS=Escherichia coli (strain K12)
GN=hrpA PE=3 SV=3
Length = 1300
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 76/116 (65%), Gaps = 1/116 (0%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
I+LATN+AETS+TVPGIKYVID G + + T + L + ISQA A QR GR GR
Sbjct: 344 IVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 403
Query: 61 AEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPK 115
+EG C R+YSE+DF + T PEI RTNLAS L + +L + + A F F++ P K
Sbjct: 404 SEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDK 459
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 124 SIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGYAAQHRI 176
SI P S L P++++ EL++TSR + + + IDP W+ + AQH I
Sbjct: 653 SIFPGSGLFKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPV-----AQHLI 700
>sp|Q9DBV3|DHX34_MOUSE Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34
PE=2 SV=2
Length = 1145
Score = 107 bits (266), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA 61
IL+TNIAETS+T+ GI++V+DSG VK+ ++ P L LQ ISQA A QR GRAGR
Sbjct: 439 ILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTG 498
Query: 62 EGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPP 114
G CYR+Y+E D+ VPEI+R L + L + S+ + + TF F++ PP
Sbjct: 499 PGVCYRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPP 552
>sp|Q14147|DHX34_HUMAN Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34
PE=1 SV=2
Length = 1143
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA 61
IL+TNIAETS+T+ GI++V+DSG VK+ ++ P L LQ ISQA A QR GRAGR
Sbjct: 437 ILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTG 496
Query: 62 EGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPP 114
G C+R+Y+E D+ VPEI+R L S L + S+ + + TF F++ PP
Sbjct: 497 PGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPP 550
>sp|P45018|HRPA_HAEIN ATP-dependent RNA helicase HrpA homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hrpA PE=3
SV=2
Length = 1304
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
I+LATN+AETS+TVP IKYVID G + + T + L + ISQA A QR GR GR
Sbjct: 348 IVLATNVAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 407
Query: 61 AEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKP 113
+EG C R+YSEEDF + T PEI RTNLAS L + +L + + F F+D P
Sbjct: 408 SEGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAP 461
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Query: 115 KEIESRQLV-------SIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWI 163
KE E +Q + +I P+S L P++++ EL++TS+ + + ++ I+P WI
Sbjct: 643 KEAEKQQYLGARNAHFAIFPNSVLFKKQPKWVMAAELVETSKLWGRMVAEIEPEWI 698
>sp|Q20875|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase
F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1
Length = 739
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 74/123 (60%), Gaps = 2/123 (1%)
Query: 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA 61
+++TNIAETS+T+ G+ +VID G KQK ++P ++ L V IS+A A QR GRAGR
Sbjct: 362 VISTNIAETSLTIDGVVFVIDPGFSKQKVYNPRIRVESLLVCPISKASAMQRAGRAGRTK 421
Query: 62 EGFCYRMYSEEDF-RRMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKEIES 119
G C+R+Y+E + M T PEI R+NL S L L L + FDFMD P E
Sbjct: 422 PGKCFRLYTETAYGSEMQDQTYPEILRSNLGSVVLQLKKLGTEDLVHFDFMDPPAPETLM 481
Query: 120 RQL 122
R L
Sbjct: 482 RAL 484
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 117 IESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
++ QLV++HPS+ L PE+ L+ E + T++ +++T++ + P W+ ++ P Y
Sbjct: 657 VKDNQLVNLHPSTVLDHK-PEWALYNEFVLTTKNFIRTVTDVRPEWLLQIAPQY 709
>sp|P20095|PRP2_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein
PRP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PRP2 PE=1 SV=1
Length = 876
Score = 100 bits (249), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++LATNIAETS+T+ GI+YVID G VK+ ++ P TG+ L S+A QR GRAGR
Sbjct: 497 VVLATNIAETSLTIDGIRYVIDPGFVKENSYVPSTGMTQLLTVPCSRASVDQRAGRAGRV 556
Query: 61 AEGFCYRMYSEEDF-RRMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKP 113
G C+R++++ + + PEI RTNL++T L LLSL + + F MDKP
Sbjct: 557 GPGKCFRIFTKWSYLHELELMPKPEITRTNLSNTVLLLLSLGVTDLIKFPLMDKP 611
>sp|P36009|DHR2_YEAST Probable ATP-dependent RNA helicase DHR2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DHR2 PE=1
SV=1
Length = 735
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++ +TNIAETS+T+ G+K+V+DSGL K K GL L ISQA A QR+GRAGRE
Sbjct: 356 VVFSTNIAETSVTISGVKFVVDSGLRKVKVWRHQLGLATLLTVPISQASAMQRSGRAGRE 415
Query: 61 AEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKE 116
+EG +R+Y E D+ ++ K + PEI R+++ S L L + + + + + P KE
Sbjct: 416 SEGKSFRLYCESDYVKLPKQSEPEIARSDVTSPVLMLKRYGVDDLLNWTWFENPGKE 472
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 111 DKPPKEIESRQLVSIHPSSSL--AGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVP 168
D+ + + + + +SIHPSS L S P I++TE + T++ Y + +S I+ +W+ E+V
Sbjct: 663 DRSYRTVSTGEPISIHPSSMLFMNKSCPG-IMYTEYVFTTKGYARNVSRIELSWLQEVVT 721
Query: 169 GYAA 172
AA
Sbjct: 722 NAAA 725
>sp|Q7Z478|DHX29_HUMAN ATP-dependent RNA helicase DHX29 OS=Homo sapiens GN=DHX29 PE=1 SV=2
Length = 1369
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 71/118 (60%), Gaps = 4/118 (3%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
I+LATNIAET IT+P + +VID+G K+ +H + + L T +S+A A QR GRAGR
Sbjct: 926 IVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASALQRQGRAGRV 985
Query: 61 AEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEINAATFDFMDK---PPK 115
+GFC+RMY+ E F +VPEI R L L ++ + + DF+ K PP+
Sbjct: 986 RDGFCFRMYTRERFEGFMDYSVPEILRVPLEELCLHIMKCNLGSPE-DFLSKALDPPQ 1042
>sp|Q6PGC1|DHX29_MOUSE ATP-dependent RNA helicase Dhx29 OS=Mus musculus GN=Dhx29 PE=2 SV=1
Length = 1365
Score = 96.7 bits (239), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
I+LATNIAET IT+P + +VID+G K+ +H + + L T +S+A A QR GRAGR
Sbjct: 925 IVLATNIAETGITIPDVVFVIDTGRTKENKYHESSQMSSLVETFVSKASALQRQGRAGRV 984
Query: 61 AEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEINAATFDFMDK---PPK 115
+GFC+R+Y+ E F +VPEI R L L ++ ++ + DF+ K PP+
Sbjct: 985 RDGFCFRLYTRERFEGFLDYSVPEILRVPLEELCLHIMKCDLGSPE-DFLSKALDPPQ 1041
>sp|A3KMI0|DHX29_XENLA ATP-dependent RNA helicase DHX29 OS=Xenopus laevis GN=dhx29 PE=2 SV=1
Length = 1362
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 4/118 (3%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
I+LATNIAET IT+P + +VID+G K+ +H + + L T IS+A A QR GRAGR
Sbjct: 921 IVLATNIAETGITIPDVVFVIDAGRTKENRYHESSQMSSLVETFISKASALQRQGRAGRV 980
Query: 61 AEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEINAATFDFMDK---PPK 115
G+C+R+Y+ E F + +VPEI R L L ++ ++ + DF+ K PP+
Sbjct: 981 RNGYCFRLYTRERFESFMEYSVPEILRVPLEELCLHIMKCDLGSPE-DFLSKALDPPQ 1037
>sp|Q04217|DHR1_YEAST Probable ATP-dependent RNA helicase DHR1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ECM16 PE=1
SV=1
Length = 1267
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 74/119 (62%), Gaps = 8/119 (6%)
Query: 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA 61
I+ATN+AETS+T+PG++YV+DSG K++ ++ G+ +V +S+A A QR+GRAGR
Sbjct: 758 IVATNVAETSLTIPGVRYVVDSGRSKERKYNESNGVQSFEVGWVSKASANQRSGRAGRTG 817
Query: 62 EGFCYRMYS----EEDFRRMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPK 115
G CYR+YS E DF + +K PEI R + S L + S+ I N F F P +
Sbjct: 818 PGHCYRLYSSAVFEHDFEQFSK---PEILRMPVESIVLQMKSMAIHNIINFPFPTPPDR 873
>sp|Q8IY37|DHX37_HUMAN Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens GN=DHX37
PE=1 SV=1
Length = 1157
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA 61
++ATN+AETS+T+PGIKYV+D G VK++ + TG+ +VT +SQA A QR GRAGR
Sbjct: 617 VVATNVAETSLTIPGIKYVVDCGKVKKRYYDRVTGVSSFRVTWVSQASADQRAGRAGRTE 676
Query: 62 EGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEINAA-TFDFMDKP 113
G CYR+YS F + PEI R + L + +L + F F P
Sbjct: 677 PGHCYRLYSSAVFGDFEQFPPPEITRRPVEDLILQMKALNVEKVINFPFPTPP 729
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 103 NAATFDFMDKPPKEIESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAW 162
NA +D P V IHPSS L LPE++++ E+++T++ YMK +S ++ W
Sbjct: 953 NAYKTPLLDDP---------VFIHPSSVLFKELPEFVVYQEIVETTKMYMKGVSSVEVQW 1003
Query: 163 ITEMVPGYAAQHRIVTDP 180
I ++P Y + + +P
Sbjct: 1004 IPALLPSYCQFDKPLEEP 1021
>sp|Q6P5D3|DHX57_MOUSE Putative ATP-dependent RNA helicase DHX57 OS=Mus musculus GN=Dhx57
PE=2 SV=2
Length = 1388
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 75/120 (62%), Gaps = 6/120 (5%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
II++TNIAETSIT+ + YVIDSG +K+K + G G++ L+ T +SQA A QR GRAGR
Sbjct: 911 IIISTNIAETSITIDDVVYVIDSGKMKEKRYDAGKGMESLEDTFVSQANALQRKGRAGRV 970
Query: 61 AEGFCYRMYSEEDF-RRMNKNTVPEIQRTNLASTALTLLSLEINA-----ATFDFMDKPP 114
A G C+ +++ + ++ K +PEIQR L L + LE+ + + F + +PP
Sbjct: 971 ASGVCFHLFTSHHYNHQLLKQQLPEIQRVPLEQLCLRIKILEMFSTHNLQSVFSRLIEPP 1030
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,852,844
Number of Sequences: 539616
Number of extensions: 2273615
Number of successful extensions: 5551
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 5306
Number of HSP's gapped (non-prelim): 199
length of query: 182
length of database: 191,569,459
effective HSP length: 110
effective length of query: 72
effective length of database: 132,211,699
effective search space: 9519242328
effective search space used: 9519242328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)