Query psy17746
Match_columns 182
No_of_seqs 178 out of 1476
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 21:52:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922|consensus 100.0 4.3E-63 9.3E-68 447.0 13.2 176 1-176 319-671 (674)
2 KOG0923|consensus 100.0 3.9E-62 8.4E-67 439.8 8.9 179 1-179 535-890 (902)
3 KOG0924|consensus 100.0 5.6E-59 1.2E-63 420.5 7.7 174 1-174 626-975 (1042)
4 KOG0925|consensus 100.0 3.5E-58 7.5E-63 404.0 10.7 175 1-176 316-671 (699)
5 PRK11131 ATP-dependent RNA hel 100.0 1.6E-50 3.6E-55 390.7 12.7 179 1-179 340-704 (1294)
6 KOG0926|consensus 100.0 8.2E-51 1.8E-55 372.0 8.8 117 1-117 633-751 (1172)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.1E-46 2.5E-51 364.7 11.5 179 1-179 333-694 (1283)
8 COG1643 HrpA HrpA-like helicas 100.0 5.6E-45 1.2E-49 342.0 6.5 117 1-117 316-434 (845)
9 PRK11664 ATP-dependent RNA hel 100.0 7.7E-40 1.7E-44 309.0 12.8 172 1-174 268-573 (812)
10 KOG0920|consensus 100.0 1.4E-38 3E-43 299.1 4.0 164 1-167 473-671 (924)
11 TIGR01970 DEAH_box_HrpB ATP-de 100.0 3.9E-37 8.4E-42 290.6 12.3 117 1-117 265-382 (819)
12 PHA02653 RNA helicase NPH-II; 99.9 3E-26 6.6E-31 212.9 6.4 103 1-117 449-554 (675)
13 KOG0921|consensus 99.7 3.8E-18 8.3E-23 159.3 5.1 117 1-117 703-822 (1282)
14 PF07717 OB_NTP_bind: Oligonuc 99.6 1.2E-15 2.6E-20 112.2 5.1 53 118-170 62-114 (114)
15 PRK11776 ATP-dependent RNA hel 98.4 2.7E-07 5.8E-12 82.6 4.3 56 1-74 295-351 (460)
16 PTZ00424 helicase 45; Provisio 98.4 2.6E-07 5.6E-12 80.7 3.7 57 1-75 320-377 (401)
17 PRK01297 ATP-dependent RNA hel 98.4 3.2E-07 6.9E-12 82.6 4.3 55 1-73 388-443 (475)
18 PTZ00110 helicase; Provisional 98.3 4E-07 8.8E-12 83.6 3.5 56 1-74 430-486 (545)
19 PRK11057 ATP-dependent DNA hel 98.3 7.1E-07 1.5E-11 83.0 4.7 57 1-75 289-346 (607)
20 PF00271 Helicase_C: Helicase 98.2 1.2E-06 2.5E-11 59.5 3.8 42 1-60 36-77 (78)
21 PRK01172 ski2-like helicase; P 98.2 9.5E-07 2.1E-11 82.9 3.2 58 1-68 314-374 (674)
22 TIGR00614 recQ_fam ATP-depende 98.2 2.1E-06 4.5E-11 77.4 5.1 57 1-75 279-336 (470)
23 PRK04837 ATP-dependent RNA hel 98.2 1.2E-06 2.6E-11 77.7 3.3 55 1-73 308-363 (423)
24 PLN00206 DEAD-box ATP-dependen 98.1 1.8E-06 4E-11 78.8 4.1 56 1-74 421-477 (518)
25 TIGR01389 recQ ATP-dependent D 98.1 2.8E-06 6.1E-11 78.6 5.1 56 1-74 277-333 (591)
26 PRK11192 ATP-dependent RNA hel 98.1 2.7E-06 5.8E-11 75.6 4.7 58 1-76 298-356 (434)
27 TIGR00643 recG ATP-dependent D 98.0 9.6E-06 2.1E-10 75.8 6.1 52 1-69 511-563 (630)
28 PRK10590 ATP-dependent RNA hel 98.0 5.6E-06 1.2E-10 74.3 4.3 56 1-74 298-354 (456)
29 PRK04537 ATP-dependent RNA hel 98.0 5.6E-06 1.2E-10 76.6 4.0 55 1-73 310-365 (572)
30 COG1111 MPH1 ERCC4-like helica 98.0 8.8E-06 1.9E-10 73.5 4.5 54 1-72 428-481 (542)
31 PLN03137 ATP-dependent DNA hel 97.9 1.1E-05 2.3E-10 79.3 5.1 57 1-75 733-790 (1195)
32 KOG0921|consensus 97.9 9.2E-07 2E-11 84.2 -2.1 117 1-117 711-830 (1282)
33 smart00490 HELICc helicase sup 97.9 6.6E-06 1.4E-10 55.0 2.5 42 1-60 40-81 (82)
34 PRK02362 ski2-like helicase; P 97.9 2.8E-05 6.1E-10 73.8 7.4 62 1-71 332-396 (737)
35 TIGR03817 DECH_helic helicase/ 97.9 4.7E-06 1E-10 79.3 2.1 52 1-70 332-384 (742)
36 PRK11634 ATP-dependent RNA hel 97.8 2.1E-05 4.5E-10 73.7 4.5 55 1-73 298-353 (629)
37 PRK10917 ATP-dependent DNA hel 97.8 2.7E-05 5.8E-10 73.5 4.5 53 1-70 534-587 (681)
38 KOG0354|consensus 97.7 3.2E-05 7E-10 72.9 4.7 53 1-72 477-529 (746)
39 PRK13766 Hef nuclease; Provisi 97.7 2.7E-05 5.9E-10 74.0 3.6 54 1-72 426-479 (773)
40 PRK10689 transcription-repair 97.6 3.7E-05 8.1E-10 76.3 3.4 52 1-70 864-917 (1147)
41 TIGR00580 mfd transcription-re 97.6 4.9E-05 1.1E-09 74.0 3.1 53 1-71 715-769 (926)
42 PRK00254 ski2-like helicase; P 97.4 0.00019 4.1E-09 68.1 5.2 61 1-71 324-387 (720)
43 KOG0331|consensus 97.4 0.0002 4.3E-09 65.4 5.1 57 1-75 394-451 (519)
44 cd00079 HELICc Helicase superf 97.4 0.00011 2.4E-09 53.3 2.8 49 1-67 81-130 (131)
45 PRK13767 ATP-dependent helicas 97.3 0.00023 5E-09 69.0 4.5 52 1-70 343-398 (876)
46 PRK05298 excinuclease ABC subu 97.3 0.00021 4.6E-09 67.2 4.1 57 1-70 499-555 (652)
47 TIGR00631 uvrb excinuclease AB 97.2 0.00024 5.3E-09 66.9 3.5 58 1-71 495-552 (655)
48 TIGR02621 cas3_GSU0051 CRISPR- 97.2 0.0003 6.4E-09 67.8 3.7 90 1-113 339-434 (844)
49 TIGR01587 cas3_core CRISPR-ass 97.0 0.00039 8.5E-09 59.9 2.7 51 1-72 281-336 (358)
50 KOG0345|consensus 97.0 0.0005 1.1E-08 62.0 2.8 73 1-91 310-386 (567)
51 PRK09751 putative ATP-dependen 96.9 0.00069 1.5E-08 68.7 3.3 46 1-64 330-375 (1490)
52 PRK12898 secA preprotein trans 96.9 0.0012 2.5E-08 62.3 4.2 54 1-72 524-586 (656)
53 PRK09200 preprotein translocas 96.7 0.0016 3.4E-08 62.6 4.1 54 1-72 479-541 (790)
54 COG0513 SrmB Superfamily II DN 96.4 0.0034 7.4E-08 57.5 4.0 54 1-72 326-380 (513)
55 KOG0336|consensus 96.4 0.00088 1.9E-08 59.9 0.1 77 1-95 518-604 (629)
56 KOG4150|consensus 96.3 0.0029 6.3E-08 58.7 2.8 43 2-62 587-629 (1034)
57 KOG0333|consensus 96.3 0.0044 9.5E-08 56.8 3.9 55 1-73 570-625 (673)
58 TIGR03714 secA2 accessory Sec 96.2 0.005 1.1E-07 58.9 4.0 53 1-72 475-537 (762)
59 PHA02558 uvsW UvsW helicase; P 96.2 0.0034 7.3E-08 57.3 2.7 46 1-64 397-443 (501)
60 TIGR00603 rad25 DNA repair hel 96.2 0.0038 8.1E-08 59.5 3.1 55 1-72 545-607 (732)
61 KOG0344|consensus 96.0 0.0047 1E-07 56.9 2.8 56 1-74 441-497 (593)
62 TIGR00963 secA preprotein tran 96.0 0.0073 1.6E-07 57.6 3.9 54 1-72 456-517 (745)
63 KOG0335|consensus 96.0 0.0041 8.9E-08 56.4 2.2 52 1-70 390-442 (482)
64 PRK12906 secA preprotein trans 95.9 0.0056 1.2E-07 58.8 3.1 54 1-72 491-553 (796)
65 COG4098 comFA Superfamily II D 95.9 0.0077 1.7E-07 52.8 3.4 56 1-72 358-417 (441)
66 PRK09694 helicase Cas3; Provis 95.7 0.0058 1.3E-07 59.4 2.1 40 1-61 624-663 (878)
67 KOG0330|consensus 95.7 0.0054 1.2E-07 54.4 1.6 53 1-71 353-406 (476)
68 TIGR00595 priA primosomal prot 95.6 0.0082 1.8E-07 55.0 2.7 61 1-71 315-381 (505)
69 KOG0338|consensus 95.4 0.0039 8.4E-08 57.1 -0.0 36 1-36 479-515 (691)
70 PRK05580 primosome assembly pr 95.3 0.011 2.3E-07 56.2 2.4 61 1-71 483-549 (679)
71 KOG0342|consensus 95.1 0.061 1.3E-06 49.0 6.5 76 1-94 383-467 (543)
72 COG1200 RecG RecG-like helicas 95.1 0.026 5.7E-07 53.1 4.3 53 1-71 536-590 (677)
73 COG1197 Mfd Transcription-repa 94.8 0.033 7.2E-07 55.2 4.3 53 1-71 858-912 (1139)
74 KOG0340|consensus 94.7 0.013 2.9E-07 51.5 1.2 54 1-72 307-361 (442)
75 PRK12900 secA preprotein trans 94.7 0.022 4.8E-07 55.8 2.8 55 1-73 649-712 (1025)
76 COG0514 RecQ Superfamily II DN 94.6 0.044 9.5E-07 51.2 4.4 56 1-74 283-339 (590)
77 COG1205 Distinct helicase fami 94.6 0.011 2.4E-07 57.4 0.5 43 1-61 367-410 (851)
78 KOG0348|consensus 94.5 0.039 8.5E-07 50.9 3.8 76 1-94 500-578 (708)
79 KOG0339|consensus 94.1 0.05 1.1E-06 50.1 3.5 56 1-74 521-577 (731)
80 PRK04914 ATP-dependent helicas 93.1 0.083 1.8E-06 52.0 3.4 54 1-72 549-605 (956)
81 KOG0341|consensus 92.9 0.11 2.3E-06 46.6 3.5 53 1-71 474-527 (610)
82 KOG0352|consensus 92.6 0.14 3E-06 46.4 3.7 55 1-73 308-363 (641)
83 COG1203 CRISPR-associated heli 92.3 0.07 1.5E-06 51.1 1.7 46 1-67 497-545 (733)
84 KOG0351|consensus 92.0 0.12 2.7E-06 50.7 3.1 58 1-76 538-596 (941)
85 COG1201 Lhr Lhr-like helicases 91.5 0.16 3.4E-06 49.3 3.0 82 1-100 307-400 (814)
86 KOG0920|consensus 91.0 0.5 1.1E-05 46.4 5.9 67 103-169 772-846 (924)
87 KOG0953|consensus 90.9 0.47 1E-05 44.3 5.3 62 1-72 412-477 (700)
88 KOG0347|consensus 90.6 0.33 7.2E-06 45.2 4.1 54 1-73 516-571 (731)
89 KOG0350|consensus 88.9 0.35 7.6E-06 44.5 2.9 54 1-72 486-540 (620)
90 KOG0343|consensus 88.8 0.48 1E-05 44.2 3.7 55 1-73 368-423 (758)
91 PRK11448 hsdR type I restricti 88.3 0.45 9.8E-06 47.8 3.5 61 1-79 759-823 (1123)
92 KOG0328|consensus 86.0 1.1 2.4E-05 38.7 4.1 57 1-75 319-376 (400)
93 KOG0326|consensus 85.6 1.2 2.6E-05 39.1 4.2 53 2-72 376-429 (459)
94 KOG0332|consensus 85.1 0.97 2.1E-05 40.4 3.4 59 1-71 383-442 (477)
95 KOG0349|consensus 78.5 1.8 3.9E-05 39.6 2.7 50 2-69 562-612 (725)
96 COG1204 Superfamily II helicas 77.9 3.1 6.8E-05 40.3 4.4 52 1-61 343-394 (766)
97 PRK14701 reverse gyrase; Provi 77.3 1 2.2E-05 47.0 1.0 68 1-74 381-458 (1638)
98 TIGR02562 cas3_yersinia CRISPR 73.5 2.4 5.2E-05 42.4 2.3 44 1-65 841-884 (1110)
99 KOG0391|consensus 70.7 5.5 0.00012 40.7 4.0 58 2-74 1332-1389(1958)
100 KOG0353|consensus 70.2 3.6 7.9E-05 37.0 2.5 27 1-27 370-396 (695)
101 PRK12326 preprotein translocas 68.6 4.2 9.1E-05 39.3 2.7 52 1-70 478-545 (764)
102 PRK12903 secA preprotein trans 67.9 5.4 0.00012 39.3 3.4 47 1-65 477-532 (925)
103 KOG3360|consensus 66.6 1.9 4E-05 31.1 -0.0 18 58-76 16-33 (98)
104 KOG0385|consensus 66.3 8.6 0.00019 37.5 4.3 57 3-74 545-601 (971)
105 PRK12899 secA preprotein trans 65.3 6 0.00013 39.2 3.1 52 1-70 619-679 (970)
106 PRK13103 secA preprotein trans 64.5 4.9 0.00011 39.6 2.4 24 44-67 562-586 (913)
107 PLN03142 Probable chromatin-re 62.8 7.5 0.00016 39.0 3.4 58 2-74 544-601 (1033)
108 KOG4284|consensus 62.2 9.3 0.0002 36.8 3.6 54 1-72 325-379 (980)
109 TIGR01054 rgy reverse gyrase. 57.8 7.5 0.00016 39.5 2.4 30 1-30 378-412 (1171)
110 PRK12901 secA preprotein trans 56.1 12 0.00026 37.7 3.4 47 1-65 679-734 (1112)
111 KOG0327|consensus 54.5 18 0.00038 32.4 3.9 57 1-75 316-373 (397)
112 KOG0337|consensus 53.1 8.3 0.00018 35.1 1.7 52 1-70 314-366 (529)
113 PRK09401 reverse gyrase; Revie 52.3 11 0.00024 38.4 2.6 29 1-29 379-412 (1176)
114 KOG0951|consensus 50.0 12 0.00026 38.4 2.4 66 1-74 636-706 (1674)
115 KOG0950|consensus 47.4 14 0.0003 36.7 2.4 59 1-73 551-612 (1008)
116 COG1061 SSL2 DNA or RNA helica 47.3 16 0.00034 33.0 2.5 46 1-64 335-380 (442)
117 PRK12904 preprotein translocas 45.9 21 0.00046 35.0 3.3 27 44-70 544-571 (830)
118 KOG0948|consensus 45.3 13 0.00028 36.4 1.7 52 11-72 485-539 (1041)
119 COG1202 Superfamily II helicas 43.2 18 0.00039 34.5 2.2 28 42-69 520-550 (830)
120 PRK13104 secA preprotein trans 41.9 29 0.00062 34.4 3.5 24 44-67 558-582 (896)
121 KOG0334|consensus 41.0 12 0.00025 37.3 0.8 53 1-71 666-719 (997)
122 PRK13107 preprotein translocas 39.7 28 0.0006 34.6 3.0 26 45-70 563-589 (908)
123 COG1198 PriA Primosomal protei 38.6 21 0.00045 34.6 2.0 61 1-71 537-603 (730)
124 KOG0947|consensus 35.2 29 0.00063 34.9 2.4 60 1-70 659-721 (1248)
125 PF11943 DUF3460: Protein of u 32.8 16 0.00034 24.0 0.2 9 49-57 22-30 (60)
126 COG4581 Superfamily II RNA hel 32.6 34 0.00075 34.4 2.5 58 1-68 473-533 (1041)
127 KOG0388|consensus 31.4 66 0.0014 31.7 4.0 57 3-74 1100-1156(1185)
128 KOG0389|consensus 30.7 57 0.0012 32.1 3.5 27 48-74 864-890 (941)
129 COG1255 Uncharacterized protei 26.3 57 0.0012 24.5 2.2 28 2-36 39-66 (129)
130 KOG0384|consensus 23.6 1.1E+02 0.0023 31.7 4.1 80 2-99 756-836 (1373)
131 PF14157 YmzC: YmzC-like prote 20.0 2.8E+02 0.006 18.4 4.4 26 20-45 34-60 (63)
No 1
>KOG0922|consensus
Probab=100.00 E-value=4.3e-63 Score=446.97 Aligned_cols=176 Identities=51% Similarity=0.838 Sum_probs=171.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHHHhccCC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDFRRMNKN 80 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~~~l~~~ 80 (182)
||+||||||||+|||||+||||+|++|++.|||++|+++|..+||||++|.||+|||||++||+|||||++++|++|+++
T Consensus 319 vIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~~ 398 (674)
T KOG0922|consen 319 VILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPLQ 398 (674)
T ss_pred EEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhcccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhccCChHHHHHHHHhcCC-CcccccCcCCCcccc------------------------------------------
Q psy17746 81 TVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKEI------------------------------------------ 117 (182)
Q Consensus 81 ~~PeI~r~~L~~~vL~lk~lg~-~~~~f~~~dpP~~~~------------------------------------------ 117 (182)
++|||+|++|+..+|+||++|+ |+..|+|+|||++++
T Consensus 399 ~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll 478 (674)
T KOG0922|consen 399 TVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLL 478 (674)
T ss_pred CCCceeeechHHHHHHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhh
Confidence 9999999999999999999999 999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17746 118 -------------------------------------------------------------------------------- 117 (182)
Q Consensus 118 -------------------------------------------------------------------------------- 117 (182)
T Consensus 479 ~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~ 558 (674)
T KOG0922|consen 479 KSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKENGTSKKWCKENFINARSLK 558 (674)
T ss_pred hccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHH
Confidence
Q ss_pred ------------------------------------------------------ccceeEeeecccccCCCCCceeeeee
Q psy17746 118 ------------------------------------------------------ESRQLVSIHPSSSLAGSLPEYILFTE 143 (182)
Q Consensus 118 ------------------------------------------------------~~~~~v~iHPsS~l~~~~p~~ivy~e 143 (182)
.+++.|+|||||+||+++|+||||||
T Consensus 559 ~a~~ir~QL~~i~~~~~~~~~s~~~d~~~i~k~l~aGff~N~A~~~~~~~Yrti~~~~~v~IHPSS~l~~~~p~~viy~e 638 (674)
T KOG0922|consen 559 RAKDIRKQLRRILDKFGLPVSSCGGDMEKIRKCLCAGFFRNVAERDYQDGYRTIRGGQPVYIHPSSVLFRRKPEWVIYHE 638 (674)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCeEEccCCcEEEEechHHhhcCCCCEEEEEE
Confidence 46899999999999999999999999
Q ss_pred eeeccccceeeeeeeChhhhhhhCccccccCcc
Q psy17746 144 LLQTSRCYMKTLSVIDPAWITEMVPGYAAQHRI 176 (182)
Q Consensus 144 lv~t~~~yir~vs~i~~~WL~e~~p~~~~~~~~ 176 (182)
++.|+|.|||+|+.|+++||.|+||+||+.+..
T Consensus 639 l~~Ttk~Y~r~Vt~i~~~wL~e~ap~~~~~~~~ 671 (674)
T KOG0922|consen 639 LLQTTKEYMRNVTAIDPEWLLELAPHFFKQSDE 671 (674)
T ss_pred EeecchHhHhheeecCHHHHHHhCchHhhcccc
Confidence 999999999999999999999999999887653
No 2
>KOG0923|consensus
Probab=100.00 E-value=3.9e-62 Score=439.83 Aligned_cols=179 Identities=47% Similarity=0.783 Sum_probs=172.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHH-HhccC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDF-RRMNK 79 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~-~~l~~ 79 (182)
|||||||||||+|||||+||||+||+|++.|||++||++|..+|||||+|.||+|||||++||+||||||...| ..+.+
T Consensus 535 VVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~ 614 (902)
T KOG0923|consen 535 VVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEE 614 (902)
T ss_pred EEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999 68889
Q ss_pred CCCChhccCChHHHHHHHHhcCC-CcccccCcCCCcccc-----------------------------------------
Q psy17746 80 NTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKEI----------------------------------------- 117 (182)
Q Consensus 80 ~~~PeI~r~~L~~~vL~lk~lg~-~~~~f~~~dpP~~~~----------------------------------------- 117 (182)
.+.|||+|.+|.++||.||+||+ |+.+|||+||||.++
T Consensus 615 ~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~ 694 (902)
T KOG0923|consen 615 MTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIV 694 (902)
T ss_pred CCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHh
Confidence 99999999999999999999999 999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17746 118 -------------------------------------------------------------------------------- 117 (182)
Q Consensus 118 -------------------------------------------------------------------------------- 117 (182)
T Consensus 695 as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~ 774 (902)
T KOG0923|consen 695 ASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMK 774 (902)
T ss_pred hhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHH
Confidence
Q ss_pred ------------------------------------------------------ccceeEeeecccccCCCCCceeeeee
Q psy17746 118 ------------------------------------------------------ESRQLVSIHPSSSLAGSLPEYILFTE 143 (182)
Q Consensus 118 ------------------------------------------------------~~~~~v~iHPsS~l~~~~p~~ivy~e 143 (182)
...+.+++||.|+||...|.||+||+
T Consensus 775 rardir~qL~gll~~v~~~~~s~~~~~~~irk~i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~e 854 (902)
T KOG0923|consen 775 RARDIRDQLEGLLERVEIDLSSNQNDLDKIRKAITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHE 854 (902)
T ss_pred HHHHHHHHHHHHhhhccccccCChHHHHHHHHHHhccccccceeccCCCcceeeccCcceeecCcccccccCCceEEEee
Confidence 35678999999999999999999999
Q ss_pred eeeccccceeeeeeeChhhhhhhCccccccCcccCC
Q psy17746 144 LLQTSRCYMKTLSVIDPAWITEMVPGYAAQHRIVTD 179 (182)
Q Consensus 144 lv~t~~~yir~vs~i~~~WL~e~~p~~~~~~~~~~~ 179 (182)
||.|+++|||.++.|+++||.|+|||||+.++.++.
T Consensus 855 Lv~tske~mr~~~e~e~~Wlie~aphyyk~kdled~ 890 (902)
T KOG0923|consen 855 LVLTSKEFMRQVIEIEEEWLIEVAPHYYKLKDLEDA 890 (902)
T ss_pred hhcChHHHHHHHHhhhhhHHHHhchhhhhhhhcccc
Confidence 999999999999999999999999999999876543
No 3
>KOG0924|consensus
Probab=100.00 E-value=5.6e-59 Score=420.49 Aligned_cols=174 Identities=48% Similarity=0.828 Sum_probs=169.3
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHH-HhccC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDF-RRMNK 79 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~-~~l~~ 79 (182)
|||||||||||+|||||.||||||++|.++|||+.||+.|+.+|||||+|.||+|||||++||.||||||+..| ++|.+
T Consensus 626 ~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 626 CIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred EEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999 78999
Q ss_pred CCCChhccCChHHHHHHHHhcCC-CcccccCcCCCcccc-----------------------------------------
Q psy17746 80 NTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKEI----------------------------------------- 117 (182)
Q Consensus 80 ~~~PeI~r~~L~~~vL~lk~lg~-~~~~f~~~dpP~~~~----------------------------------------- 117 (182)
.+.|||+|.+|.+++|.||+||+ |+..|+|+|||+.+.
T Consensus 706 stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll 785 (1042)
T KOG0924|consen 706 STVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLL 785 (1042)
T ss_pred CCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHH
Confidence 99999999999999999999999 999999999999988
Q ss_pred --------------------------------------------------------------------------------
Q psy17746 118 -------------------------------------------------------------------------------- 117 (182)
Q Consensus 118 -------------------------------------------------------------------------------- 117 (182)
T Consensus 786 ~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~ 865 (1042)
T KOG0924|consen 786 MAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVPESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKK 865 (1042)
T ss_pred HHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCCCCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHH
Confidence
Q ss_pred ----------------------------------------------------ccceeEeeecccccCCC-CCceeeeeee
Q psy17746 118 ----------------------------------------------------ESRQLVSIHPSSSLAGS-LPEYILFTEL 144 (182)
Q Consensus 118 ----------------------------------------------------~~~~~v~iHPsS~l~~~-~p~~ivy~el 144 (182)
.++...++||+|+||+. .|+||||||+
T Consensus 866 arevR~ql~~il~~l~~~l~S~~dwdivrKCIcs~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~y~p~Yivyhel 945 (1042)
T KOG0924|consen 866 AREVRRQLLEILKQLKLPLISSDDWDIVRKCICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGLYTPDYIVYHEL 945 (1042)
T ss_pred HHHHHHHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHhccCceEEEccCCcceeecchHhhhcCCCCCeeeehHH
Confidence 57899999999999998 8999999999
Q ss_pred eeccccceeeeeeeChhhhhhhCccccccC
Q psy17746 145 LQTSRCYMKTLSVIDPAWITEMVPGYAAQH 174 (182)
Q Consensus 145 v~t~~~yir~vs~i~~~WL~e~~p~~~~~~ 174 (182)
+.|+++||++||.|+|+||.|++|-||..+
T Consensus 946 ~~T~keym~cvT~v~~~wl~E~gp~~y~ik 975 (1042)
T KOG0924|consen 946 LMTTKEYMQCVTSVSPEWLAELGPMFYSIK 975 (1042)
T ss_pred HHhHHHHHHHHhhCCHHHHHHhCceeEecc
Confidence 999999999999999999999999999665
No 4
>KOG0925|consensus
Probab=100.00 E-value=3.5e-58 Score=404.00 Aligned_cols=175 Identities=44% Similarity=0.787 Sum_probs=169.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHH-HhccC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDF-RRMNK 79 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~-~~l~~ 79 (182)
||++|||||+|+||++|+||||+|+.|+++|||+.++++|...||||+||+||+|||||++||+||||||+++| .+|.+
T Consensus 316 vVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~ 395 (699)
T KOG0925|consen 316 VVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQP 395 (699)
T ss_pred EEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999 68999
Q ss_pred CCCChhccCChHHHHHHHHhcCC-CcccccCcCCCcccc-----------------------------------------
Q psy17746 80 NTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKEI----------------------------------------- 117 (182)
Q Consensus 80 ~~~PeI~r~~L~~~vL~lk~lg~-~~~~f~~~dpP~~~~----------------------------------------- 117 (182)
.+.|||+|++|+++||+||++|+ +..+|||+|||.+++
T Consensus 396 ~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi 475 (699)
T KOG0925|consen 396 QTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLI 475 (699)
T ss_pred CCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHh
Confidence 99999999999999999999999 999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy17746 118 -------------------------------------------------------------------------------- 117 (182)
Q Consensus 118 -------------------------------------------------------------------------------- 117 (182)
T Consensus 476 ~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~ 555 (699)
T KOG0925|consen 476 GSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAHIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALK 555 (699)
T ss_pred hcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHH
Confidence
Q ss_pred ----------------------------------------------------------ccceeEeeecccccCCCCCcee
Q psy17746 118 ----------------------------------------------------------ESRQLVSIHPSSSLAGSLPEYI 139 (182)
Q Consensus 118 ----------------------------------------------------------~~~~~v~iHPsS~l~~~~p~~i 139 (182)
.++|.+++||+++| +.+|+||
T Consensus 556 ~Ad~vR~qL~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l-~~~PeWV 634 (699)
T KOG0925|consen 556 SADNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCL-DHKPEWV 634 (699)
T ss_pred hHHHHHHHHHHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEecccccc-CCCCCeE
Confidence 68999999999998 6899999
Q ss_pred eeeeeeeccccceeeeeeeChhhhhhhCccccccCcc
Q psy17746 140 LFTELLQTSRCYMKTLSVIDPAWITEMVPGYAAQHRI 176 (182)
Q Consensus 140 vy~elv~t~~~yir~vs~i~~~WL~e~~p~~~~~~~~ 176 (182)
+|||.+.|+++|||.||.|.|+||.|+||+||+.+.+
T Consensus 635 lyneFvlt~~N~ir~vt~I~pewlv~laP~YydlsNf 671 (699)
T KOG0925|consen 635 LYNEFVLTTKNFIRTVTDIRPEWLVELAPQYYDLSNF 671 (699)
T ss_pred EEeeEEeeccceeeeecccCHHHHHHhchhhcccccC
Confidence 9999999999999999999999999999999976543
No 5
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.6e-50 Score=390.67 Aligned_cols=179 Identities=41% Similarity=0.629 Sum_probs=173.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHHHhccCC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDFRRMNKN 80 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~~~l~~~ 80 (182)
|||||||||+|||||||+||||+|++|++.||++++++.|...||||+++.||+||+||+++|+|||||++++|+.++++
T Consensus 340 IIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~ 419 (1294)
T PRK11131 340 IVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEF 419 (1294)
T ss_pred EEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhccCChHHHHHHHHhcCC-CcccccCcCCCcccc------------------------------------------
Q psy17746 81 TVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKEI------------------------------------------ 117 (182)
Q Consensus 81 ~~PeI~r~~L~~~vL~lk~lg~-~~~~f~~~dpP~~~~------------------------------------------ 117 (182)
+.|||+|++|++++|++|++|+ ++..|+|+|||++++
T Consensus 420 ~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrla 499 (1294)
T PRK11131 420 TDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLA 499 (1294)
T ss_pred cCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHH
Confidence 9999999999999999999999 999999999999877
Q ss_pred --------------------------------------------------------------------------------
Q psy17746 118 -------------------------------------------------------------------------------- 117 (182)
Q Consensus 118 -------------------------------------------------------------------------------- 117 (182)
T Consensus 500 kmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~ 579 (1294)
T PRK11131 500 RMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRT 579 (1294)
T ss_pred HHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence
Q ss_pred ---------------------------------------------------------------ccceeEeeecccccCCC
Q psy17746 118 ---------------------------------------------------------------ESRQLVSIHPSSSLAGS 134 (182)
Q Consensus 118 ---------------------------------------------------------------~~~~~v~iHPsS~l~~~ 134 (182)
..+..++|||+|+||++
T Consensus 580 ~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~~~~~~~i~~all~G~~~nva~~~~~~~~y~~~~~~~~~ihP~S~L~~~ 659 (1294)
T PRK11131 580 DYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHTALLTGLLSHIGMKDAEKQEYTGARNARFSIFPGSGLFKK 659 (1294)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHHhhcHHHHeeccCCCCeEEccCCcEEEEcCCccccCC
Confidence 24678999999999999
Q ss_pred CCceeeeeeeeeccccceeeeeeeChhhhhhhCccccccCcccCC
Q psy17746 135 LPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGYAAQHRIVTD 179 (182)
Q Consensus 135 ~p~~ivy~elv~t~~~yir~vs~i~~~WL~e~~p~~~~~~~~~~~ 179 (182)
+|+||||+|++.|++.|||+|+.|+|+||.+++||||+...+++|
T Consensus 660 ~p~wvv~~Elv~Tsr~y~r~va~I~p~Wl~~~a~~l~~~~y~ePh 704 (1294)
T PRK11131 660 PPKWVMVAELVETSRLWGRIAARIEPEWIEPLAQHLIKRSYSEPH 704 (1294)
T ss_pred CCCEEEEEeeeccChhhhhhhcccCHHHHHHHHHHhccccCCCCc
Confidence 999999999999999999999999999999999999999998887
No 6
>KOG0926|consensus
Probab=100.00 E-value=8.2e-51 Score=372.01 Aligned_cols=117 Identities=42% Similarity=0.701 Sum_probs=114.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHHH-hccC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDFR-RMNK 79 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~~-~l~~ 79 (182)
||||||+||||+|||||+||||||++|+..||..+|+++....|||||+|.||+|||||++||+|||||+...|+ .+++
T Consensus 633 cVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~ 712 (1172)
T KOG0926|consen 633 CVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEE 712 (1172)
T ss_pred EEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhh
Confidence 699999999999999999999999999999999999999999999999999999999999999999999999995 8999
Q ss_pred CCCChhccCChHHHHHHHHhcCC-CcccccCcCCCcccc
Q psy17746 80 NTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKEI 117 (182)
Q Consensus 80 ~~~PeI~r~~L~~~vL~lk~lg~-~~~~f~~~dpP~~~~ 117 (182)
+..|||++.+.++++|++|+|+| ++.+|+|+.||...+
T Consensus 713 fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~ 751 (1172)
T KOG0926|consen 713 FSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSA 751 (1172)
T ss_pred hccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHH
Confidence 99999999999999999999999 999999999998866
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.1e-46 Score=364.69 Aligned_cols=179 Identities=40% Similarity=0.645 Sum_probs=170.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHHHhccCC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDFRRMNKN 80 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~~~l~~~ 80 (182)
|||||||||||||||||+||||+|+.|.+.||++++++.|...||||++|.||+|||||+++|+|||||+++.|+.++++
T Consensus 333 IVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~ 412 (1283)
T TIGR01967 333 IVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPEF 412 (1283)
T ss_pred EEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhhc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhccCChHHHHHHHHhcCC-CcccccCcCCCcccc------------------------------------------
Q psy17746 81 TVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKEI------------------------------------------ 117 (182)
Q Consensus 81 ~~PeI~r~~L~~~vL~lk~lg~-~~~~f~~~dpP~~~~------------------------------------------ 117 (182)
+.|||+|++|++++|+++++|+ ++..|+|+|||+.++
T Consensus 413 ~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarm 492 (1283)
T TIGR01967 413 TDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARM 492 (1283)
T ss_pred cCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHH
Confidence 9999999999999999999999 999999999999877
Q ss_pred --------------------------------------------------------------------------------
Q psy17746 118 -------------------------------------------------------------------------------- 117 (182)
Q Consensus 118 -------------------------------------------------------------------------------- 117 (182)
T Consensus 493 Ll~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~f 572 (1283)
T TIGR01967 493 LLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQY 572 (1283)
T ss_pred HHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcC
Confidence
Q ss_pred ------------------------------------------------------------ccceeEeeecccccCCCCCc
Q psy17746 118 ------------------------------------------------------------ESRQLVSIHPSSSLAGSLPE 137 (182)
Q Consensus 118 ------------------------------------------------------------~~~~~v~iHPsS~l~~~~p~ 137 (182)
..+..+.|||+|+|++++|+
T Consensus 573 L~~~~l~~~~~i~~QL~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~iA~~~~~~~y~~~~g~~~~ihP~S~L~~~~p~ 652 (1283)
T TIGR01967 573 LNYLRVREWQDIYRQLTQVVKELGLKLNEEPADYDAIHKALLSGLLSQIGMKDEKHEYDGARGRKFHIFPGSPLFKKPPK 652 (1283)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCccHHHHHHHHHHhhHHHHheeCCCCcEEecCCcEEEECCCccccCCCCC
Confidence 34678999999999999999
Q ss_pred eeeeeeeeeccccceeeeeeeChhhhhhhCccccccCcccCC
Q psy17746 138 YILFTELLQTSRCYMKTLSVIDPAWITEMVPGYAAQHRIVTD 179 (182)
Q Consensus 138 ~ivy~elv~t~~~yir~vs~i~~~WL~e~~p~~~~~~~~~~~ 179 (182)
||+|+|++.|++.|||.+++|+|+||.+++|++++.+..+.|
T Consensus 653 wvv~~elv~t~~~~ir~~a~I~p~wl~~~~~~~~~~~~~~~~ 694 (1283)
T TIGR01967 653 WVMAAELVETSKLYARLVAKIEPEWVEPVAGHLIKKNYFEPH 694 (1283)
T ss_pred EEEEeeecccchheEeeeccCCHHHHHHHhHHHhEeccCcee
Confidence 999999999999999999999999999999999887655443
No 8
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.6e-45 Score=341.99 Aligned_cols=117 Identities=56% Similarity=0.888 Sum_probs=115.4
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHHHhccCC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDFRRMNKN 80 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~~~l~~~ 80 (182)
|||||||||||||||||+||||+|+.|++.||+++|++.|.++|||||+|.||+|||||++||+|||||++++|+.|+++
T Consensus 316 VVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~ 395 (845)
T COG1643 316 VVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEF 395 (845)
T ss_pred EEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhcccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhccCChHHHHHHHHhcCC--CcccccCcCCCcccc
Q psy17746 81 TVPEIQRTNLASTALTLLSLEI--NAATFDFMDKPPKEI 117 (182)
Q Consensus 81 ~~PeI~r~~L~~~vL~lk~lg~--~~~~f~~~dpP~~~~ 117 (182)
+.|||+|+||++++|+++++|+ |+..|+|+|||+..+
T Consensus 396 t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~~ 434 (845)
T COG1643 396 TLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAA 434 (845)
T ss_pred CChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChHH
Confidence 9999999999999999999998 799999999999988
No 9
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=7.7e-40 Score=309.01 Aligned_cols=172 Identities=34% Similarity=0.515 Sum_probs=159.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHHHhccCC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDFRRMNKN 80 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~~~l~~~ 80 (182)
|||||||||+|||||||+||||+|+.|+..||+.+|++.|.++||||++|.||+|||||+++|.|||||+++.|+.|+++
T Consensus 268 VlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~ 347 (812)
T PRK11664 268 VVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQ 347 (812)
T ss_pred EEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhhCccC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhccCChHHHHHHHHhcCC-CcccccCcCCCcccc------------------------------------------
Q psy17746 81 TVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKEI------------------------------------------ 117 (182)
Q Consensus 81 ~~PeI~r~~L~~~vL~lk~lg~-~~~~f~~~dpP~~~~------------------------------------------ 117 (182)
+.|||+|+||++++|+++++|+ ++..|+|+|||++++
T Consensus 348 ~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~ 427 (812)
T PRK11664 348 SEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVA 427 (812)
T ss_pred CCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHH
Confidence 9999999999999999999999 899999999999987
Q ss_pred --------------------------------------------------------------------------------
Q psy17746 118 -------------------------------------------------------------------------------- 117 (182)
Q Consensus 118 -------------------------------------------------------------------------------- 117 (182)
T Consensus 428 a~~~~~~~l~~a~~laall~e~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~aypdriA~~r 507 (812)
T PRK11664 428 AKEDDEAALATAAKLAAILEEPPRSGSSDLGVALSRKQPHWQQRAQQLLKRLNVRGGEADSSLIAPLLALAFPDRIARRR 507 (812)
T ss_pred HHhcCchhhHHHHHHHHhhccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHCHHHHhhhc
Confidence
Q ss_pred --------ccceeEeeecccccCCCCCceeeeeeeeecc-c--cceeeeeeeChhhhhhhCccccccC
Q psy17746 118 --------ESRQLVSIHPSSSLAGSLPEYILFTELLQTS-R--CYMKTLSVIDPAWITEMVPGYAAQH 174 (182)
Q Consensus 118 --------~~~~~v~iHPsS~l~~~~p~~ivy~elv~t~-~--~yir~vs~i~~~WL~e~~p~~~~~~ 174 (182)
.+|.-+.+||+|.|++ .+|++++++..++ + ..|+.+++|+++||.+.+|+.+..+
T Consensus 508 ~~~~~~~l~~G~~a~l~~~~~l~~--~~~lv~a~~~~~~~~~~~ri~~a~~l~~~~l~~~~~~~~~~~ 573 (812)
T PRK11664 508 GQDGRYQLANGMGAMLDADDALSR--HEWLIAPLLLQGSASPDARILLALPLDIDELVQRCPQLVQQS 573 (812)
T ss_pred CCCCeEEeeCCCeEEECCCCcccC--CCeEEEEEhhccCccccceeeEeeccCHHHHHHHHHHhceee
Confidence 3566788999999975 4999999998763 3 4577899999999999999876543
No 10
>KOG0920|consensus
Probab=100.00 E-value=1.4e-38 Score=299.12 Aligned_cols=164 Identities=34% Similarity=0.517 Sum_probs=144.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHHHhccC-
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDFRRMNK- 79 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~~~l~~- 79 (182)
||+||||||||||||||.||||||+.|++.||+..+++++..+|+|||+|+||+|||||+++|+|||||++..|+.+.+
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~ 552 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLA 552 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhcccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999987776
Q ss_pred CCCChhccCChHHHHHHHHhcCC-Ccccc--cCcCCCcccc-------------------------------ccceeEee
Q psy17746 80 NTVPEIQRTNLASTALTLLSLEI-NAATF--DFMDKPPKEI-------------------------------ESRQLVSI 125 (182)
Q Consensus 80 ~~~PeI~r~~L~~~vL~lk~lg~-~~~~f--~~~dpP~~~~-------------------------------~~~~~v~i 125 (182)
+++|||+|.+|.++||++|.+++ ++..| .++|||+.++ .+.+.-++
T Consensus 553 ~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ 632 (924)
T KOG0920|consen 553 YQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKL 632 (924)
T ss_pred cCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchh
Confidence 99999999999999999999999 77766 6899999988 23334444
Q ss_pred ecccccCCCCCceeeeeeeeeccccceeeeeeeChhhhhhhC
Q psy17746 126 HPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMV 167 (182)
Q Consensus 126 HPsS~l~~~~p~~ivy~elv~t~~~yir~vs~i~~~WL~e~~ 167 (182)
+=-+.+|+|..+.++....+....+| +++++++=..+-+
T Consensus 633 ll~g~if~cLdp~l~iaa~Ls~k~PF---~~~~~~~~~~~~~ 671 (924)
T KOG0920|consen 633 LLFGAIFGCLDPALTIAAALSFKSPF---VSPLGKREEADKA 671 (924)
T ss_pred heehhhccccchhhhHHHHhccCCCc---ccCCCchhHHHHH
Confidence 45678899999999999999999999 5666665444433
No 11
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.9e-37 Score=290.61 Aligned_cols=117 Identities=44% Similarity=0.723 Sum_probs=115.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHHHhccCC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDFRRMNKN 80 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~~~l~~~ 80 (182)
|||||||||+|||||||+||||+|+.|+..||+.+|++.|.++||||++|.||+|||||+++|+|||||++++|+.|+++
T Consensus 265 VlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~ 344 (819)
T TIGR01970 265 VVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQ 344 (819)
T ss_pred EEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhccCChHHHHHHHHhcCC-CcccccCcCCCcccc
Q psy17746 81 TVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKEI 117 (182)
Q Consensus 81 ~~PeI~r~~L~~~vL~lk~lg~-~~~~f~~~dpP~~~~ 117 (182)
+.|||+|+||++++|+++++|+ ++..|+|+|||+.++
T Consensus 345 ~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~ 382 (819)
T TIGR01970 345 DEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVA 382 (819)
T ss_pred CCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHH
Confidence 9999999999999999999999 899999999999877
No 12
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.92 E-value=3e-26 Score=212.89 Aligned_cols=103 Identities=27% Similarity=0.303 Sum_probs=88.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHHHhccCC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDFRRMNKN 80 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~~~l~~~ 80 (182)
|+|||||||+|||||||++|||+|+++.+. +..++ ..|+||+++.||+|||||+++|.|||||+++.+
T Consensus 449 ILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~------ 516 (675)
T PHA02653 449 IIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDLL------ 516 (675)
T ss_pred EEeccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHHh------
Confidence 689999999999999999999999988663 44554 469999999999999999999999999999864
Q ss_pred CCChhccCC---hHHHHHHHHhcCCCcccccCcCCCcccc
Q psy17746 81 TVPEIQRTN---LASTALTLLSLEINAATFDFMDKPPKEI 117 (182)
Q Consensus 81 ~~PeI~r~~---L~~~vL~lk~lg~~~~~f~~~dpP~~~~ 117 (182)
.| |+|.+ |.+++|++|++|++...+.|+|||++++
T Consensus 517 -~p-I~ri~~~~L~~~vL~lk~~g~~~~~~~~ldpP~~~~ 554 (675)
T PHA02653 517 -KP-IKRIDSEFLHNYILYAKYFNLTLPEDLFVIPSNLDR 554 (675)
T ss_pred -HH-HHHHhHHHHHHHHHHHHHcCCCCcccccCCCCCHHH
Confidence 23 55555 8999999999999444456999999988
No 13
>KOG0921|consensus
Probab=99.72 E-value=3.8e-18 Score=159.26 Aligned_cols=117 Identities=37% Similarity=0.549 Sum_probs=108.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHHHhccCC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDFRRMNKN 80 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~~~l~~~ 80 (182)
+|++|||||||+||++++||||++..+.+-|-...++....++|.||-+.+||+||+||+++|.||||.++..|+.+..+
T Consensus 703 ii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~ 782 (1282)
T KOG0921|consen 703 IILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDH 782 (1282)
T ss_pred cccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhccCChHHHHHHHHhcCC-Ccccc--cCcCCCcccc
Q psy17746 81 TVPEIQRTNLASTALTLLSLEI-NAATF--DFMDKPPKEI 117 (182)
Q Consensus 81 ~~PeI~r~~L~~~vL~lk~lg~-~~~~f--~~~dpP~~~~ 117 (182)
-.|||.|.+|.++.|.+|.+-. .+..| -.+.||+.++
T Consensus 783 ~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~da 822 (1282)
T KOG0921|consen 783 GTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDA 822 (1282)
T ss_pred CcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhh
Confidence 9999999999999998887766 66555 4567776665
No 14
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.59 E-value=1.2e-15 Score=112.21 Aligned_cols=53 Identities=38% Similarity=0.737 Sum_probs=44.8
Q ss_pred ccceeEeeecccccCCCCCceeeeeeeeeccccceeeeeeeChhhhhhhCccc
Q psy17746 118 ESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170 (182)
Q Consensus 118 ~~~~~v~iHPsS~l~~~~p~~ivy~elv~t~~~yir~vs~i~~~WL~e~~p~~ 170 (182)
..+..++|||+|++++..|+||+|+|++.|+|.|||+||+|+|+||.+++|+|
T Consensus 62 ~~~~~v~iHPsS~l~~~~p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 62 SNGQPVFIHPSSVLFKKPPKWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp TTG-EEEE-TTSTTTTTT-SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred cCCCEEEEecCccccccccccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 46679999999999999999999999999999999999999999999999986
No 15
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.39 E-value=2.7e-07 Score=82.65 Aligned_cols=56 Identities=23% Similarity=0.485 Sum_probs=47.4
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~ 74 (182)
|+|||+++|.++.||+|.+||+.++. -+..+-.||.||+||.+ .|.||.|++.++.
T Consensus 295 vLVaTdv~~rGiDi~~v~~VI~~d~p------------------~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 295 VLVATDVAARGLDIKALEAVINYELA------------------RDPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred EEEEecccccccchhcCCeEEEecCC------------------CCHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 68999999999999999999987763 34556689999999965 4999999998654
No 16
>PTZ00424 helicase 45; Provisional
Probab=98.38 E-value=2.6e-07 Score=80.73 Aligned_cols=57 Identities=25% Similarity=0.464 Sum_probs=49.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDFR 75 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~~ 75 (182)
|++||++++-++.||+|.+||+-+. +.|.++-.||.||+||.+ .|.|+.|++++..+
T Consensus 320 vLvaT~~l~~GiDip~v~~VI~~~~------------------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~ 377 (401)
T PTZ00424 320 VLITTDLLARGIDVQQVSLVINYDL------------------PASPENYIHRIGRSGRFGRKGVAINFVTPDDIE 377 (401)
T ss_pred EEEEcccccCCcCcccCCEEEEECC------------------CCCHHHEeecccccccCCCCceEEEEEcHHHHH
Confidence 6899999999999999999997553 457778889999999965 59999999987654
No 17
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.37 E-value=3.2e-07 Score=82.60 Aligned_cols=55 Identities=31% Similarity=0.507 Sum_probs=48.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEED 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~~ 73 (182)
|++|||++|.+|.|++|.+||+.|+ |-|.++-.||.||+||.+. |.++-++++++
T Consensus 388 vLvaT~~l~~GIDi~~v~~VI~~~~------------------P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 388 VLVATDVAGRGIHIDGISHVINFTL------------------PEDPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred EEEEccccccCCcccCCCEEEEeCC------------------CCCHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 6899999999999999999998776 4578899999999999764 99999998763
No 18
>PTZ00110 helicase; Provisional
Probab=98.31 E-value=4e-07 Score=83.64 Aligned_cols=56 Identities=29% Similarity=0.573 Sum_probs=48.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~ 74 (182)
|+|||++|+.+|.||+|++||+.++ |-+.++-.||.||+||.+ .|.||-+++.+..
T Consensus 430 ILVaTdv~~rGIDi~~v~~VI~~d~------------------P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 430 IMIATDVASRGLDVKDVKYVINFDF------------------PNQIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred EEEEcchhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 6899999999999999999998665 345677889999999975 5999999997654
No 19
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.29 E-value=7.1e-07 Score=83.00 Aligned_cols=57 Identities=26% Similarity=0.459 Sum_probs=49.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDFR 75 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~~ 75 (182)
|+|||++++.+|.+|+|++||+-+. |-|.++-.||.|||||.+ +|.|+-+|+.+++.
T Consensus 289 VLVaT~a~~~GIDip~V~~VI~~d~------------------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 289 IVVATVAFGMGINKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred EEEEechhhccCCCCCcCEEEEeCC------------------CCCHHHHHHHhhhccCCCCCceEEEEeCHHHHH
Confidence 6899999999999999999997555 447788999999999976 48999999987653
No 20
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=98.25 E-value=1.2e-06 Score=59.46 Aligned_cols=42 Identities=36% Similarity=0.437 Sum_probs=38.7
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~ 60 (182)
|++||++++.++.+|++..||..+. +-|..+..||.||+||.
T Consensus 36 vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 36 VLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp EEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHHHHHHTTSSTT
T ss_pred EEEeecccccccccccccccccccc------------------CCCHHHHHHHhhcCCCC
Confidence 5899999999999999999998887 66789999999999996
No 21
>PRK01172 ski2-like helicase; Provisional
Probab=98.19 E-value=9.5e-07 Score=82.87 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=44.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc---cceEEee
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA---EGFCYRM 68 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~---~G~c~rL 68 (182)
|++||++++.++++|+..+||+. . ..|+. ....++|.++..||.|||||.+ .|.++-+
T Consensus 314 VLvaT~~la~Gvnipa~~VII~~-~---~~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 314 VIVATPTLAAGVNLPARLVIVRD-I---TRYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIY 374 (674)
T ss_pred EEEecchhhccCCCcceEEEEcC-c---eEeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEE
Confidence 68999999999999999888863 1 23332 2235799999999999999975 4665544
No 22
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.18 E-value=2.1e-06 Score=77.42 Aligned_cols=57 Identities=30% Similarity=0.525 Sum_probs=49.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDFR 75 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~~ 75 (182)
|++||++++.+|.+|+|++||..+.. -|.++-.||.|||||.+ +|.|+-+|+..+..
T Consensus 279 vLVaT~~~~~GID~p~V~~VI~~~~P------------------~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 279 VVVATVAFGMGINKPDVRFVIHYSLP------------------KSMESYYQESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred EEEEechhhccCCcccceEEEEeCCC------------------CCHHHHHhhhcCcCCCCCCceEEEEechhHHH
Confidence 68999999999999999999977663 35678899999999966 58999999987653
No 23
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.17 E-value=1.2e-06 Score=77.67 Aligned_cols=55 Identities=27% Similarity=0.445 Sum_probs=46.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEED 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~~ 73 (182)
|+||||+++.+|.||+|++||+-++. -+.++-.||.||+||.+. |.++-++++++
T Consensus 308 vLVaTdv~~rGiDip~v~~VI~~d~P------------------~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~ 363 (423)
T PRK04837 308 ILVATDVAARGLHIPAVTHVFNYDLP------------------DDCEDYVHRIGRTGRAGASGHSISLACEEY 363 (423)
T ss_pred EEEEechhhcCCCccccCEEEEeCCC------------------CchhheEeccccccCCCCCeeEEEEeCHHH
Confidence 68999999999999999999986652 344556799999999654 99999999874
No 24
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=98.15 E-value=1.8e-06 Score=78.79 Aligned_cols=56 Identities=23% Similarity=0.313 Sum_probs=48.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~ 74 (182)
|+|||++++.+|.||+|++||..++ |.|..+-.||.||+||.+ .|.++-+++.+..
T Consensus 421 ILVaTdvl~rGiDip~v~~VI~~d~------------------P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 421 VIVATGVLGRGVDLLRVRQVIIFDM------------------PNTIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred EEEEecHhhccCCcccCCEEEEeCC------------------CCCHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 6899999999999999999996544 456788899999999976 4999999987653
No 25
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.13 E-value=2.8e-06 Score=78.58 Aligned_cols=56 Identities=29% Similarity=0.494 Sum_probs=48.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~ 74 (182)
|++||+.++.+|.+|+|++||+.+. |-|-.+-.||.|||||.+ +|.|+-+|+.++.
T Consensus 277 vlVaT~a~~~GID~p~v~~VI~~~~------------------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 277 VMVATNAFGMGIDKPNVRFVIHYDM------------------PGNLESYYQEAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred EEEEechhhccCcCCCCCEEEEcCC------------------CCCHHHHhhhhccccCCCCCceEEEecCHHHH
Confidence 6899999999999999999998765 345677889999999965 6899999998765
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.13 E-value=2.7e-06 Score=75.58 Aligned_cols=58 Identities=24% Similarity=0.410 Sum_probs=48.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHHHh
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDFRR 76 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~~~ 76 (182)
|+|||++++.++.||+|.+||+.+. |.|...-.||.||+||.+ .|.++-+.+..++..
T Consensus 298 vLVaTd~~~~GiDip~v~~VI~~d~------------------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 298 VLVATDVAARGIDIDDVSHVINFDM------------------PRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred EEEEccccccCccCCCCCEEEEECC------------------CCCHHHHhhcccccccCCCCceEEEEecHHHHHH
Confidence 6899999999999999999997553 346677889999999964 499999998776643
No 27
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.01 E-value=9.6e-06 Score=75.79 Aligned_cols=52 Identities=27% Similarity=0.535 Sum_probs=42.7
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeec
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMY 69 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~ 69 (182)
|+|||+++|.++.||+++.||- ||+.. -+-++..||+||+||.+ +|.||-++
T Consensus 511 ILVaT~vie~GvDiP~v~~VIi--------~~~~r---------~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 511 ILVATTVIEVGVDVPNATVMVI--------EDAER---------FGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred EEEECceeecCcccCCCcEEEE--------eCCCc---------CCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 6899999999999999999983 44332 12368999999999965 69999998
No 28
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.01 E-value=5.6e-06 Score=74.29 Aligned_cols=56 Identities=23% Similarity=0.404 Sum_probs=46.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~~~ 74 (182)
|+|||++++-+|.||+|.+||+.++ |-+..+-.||.||+||.+. |.|+-+++.++.
T Consensus 298 iLVaTdv~~rGiDip~v~~VI~~~~------------------P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 298 VLVATDIAARGLDIEELPHVVNYEL------------------PNVPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred EEEEccHHhcCCCcccCCEEEEeCC------------------CCCHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 6899999999999999999997654 2345667899999999654 999999987654
No 29
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.99 E-value=5.6e-06 Score=76.61 Aligned_cols=55 Identities=29% Similarity=0.474 Sum_probs=46.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEED 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~ 73 (182)
|+|||+++|.+|.||+|++||+-++ |.+..+-.||.||+||.+ .|.|+-|++..+
T Consensus 310 VLVaTdv~arGIDip~V~~VInyd~------------------P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 310 ILVATDVAARGLHIDGVKYVYNYDL------------------PFDAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred EEEEehhhhcCCCccCCCEEEEcCC------------------CCCHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 6899999999999999999996553 456677889999999964 499999988753
No 30
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=97.95 E-value=8.8e-06 Score=73.52 Aligned_cols=54 Identities=30% Similarity=0.543 Sum_probs=46.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~ 72 (182)
|.|||+|||=++.||++++|| .|+|.. |-=-..||+||+||.++|..|=|.++.
T Consensus 428 VLVaTSVgEEGLDIp~vDlVi--------fYEpvp----------SeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 428 VLVATSVGEEGLDIPEVDLVI--------FYEPVP----------SEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred EEEEcccccccCCCCcccEEE--------EecCCc----------HHHHHHHhhCccccCCCCeEEEEEecC
Confidence 579999999999999999998 677653 223468999999999999999999965
No 31
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=97.94 E-value=1.1e-05 Score=79.35 Aligned_cols=57 Identities=37% Similarity=0.515 Sum_probs=48.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDFR 75 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~~ 75 (182)
|||||+.++-+|.+|+|++||.-++.+ |-.+-.||.|||||-+ +|.|+-+|+..++.
T Consensus 733 VLVATdAFGMGIDkPDVR~VIHydlPk------------------SiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 733 IICATVAFGMGINKPDVRFVIHHSLPK------------------SIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred EEEEechhhcCCCccCCcEEEEcCCCC------------------CHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 689999999999999999999877643 4567789999999965 69999999987663
No 32
>KOG0921|consensus
Probab=97.94 E-value=9.2e-07 Score=84.19 Aligned_cols=117 Identities=9% Similarity=-0.087 Sum_probs=97.3
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHHHhccCC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDFRRMNKN 80 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~~~l~~~ 80 (182)
++..|+++|+++++..+.+|+|++..+...+-....++...+.|-++-...||.|++++.+.|.||.++....+.+|...
T Consensus 711 etsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~ 790 (1282)
T KOG0921|consen 711 ETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRT 790 (1282)
T ss_pred eEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhccCChHHHHHHHHhcC---CCcccccCcCCCcccc
Q psy17746 81 TVPEIQRTNLASTALTLLSLE---INAATFDFMDKPPKEI 117 (182)
Q Consensus 81 ~~PeI~r~~L~~~vL~lk~lg---~~~~~f~~~dpP~~~~ 117 (182)
..+||.+..+....+.++.+- +.+...+.+.+|+...
T Consensus 791 plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l 830 (1282)
T KOG0921|consen 791 PLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVL 830 (1282)
T ss_pred ccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHH
Confidence 999999887655444333221 1233345566655544
No 33
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=97.92 E-value=6.6e-06 Score=54.99 Aligned_cols=42 Identities=43% Similarity=0.661 Sum_probs=38.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~ 60 (182)
|+++|++++.+++++++..||..+. +.+.++..||.||+||.
T Consensus 40 vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 40 VLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYIQRIGRAGRA 81 (82)
T ss_pred EEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHHHHhhcccccC
Confidence 5899999999999999999997776 67889999999999995
No 34
>PRK02362 ski2-like helicase; Provisional
Probab=97.91 E-value=2.8e-05 Score=73.85 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=52.4
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc---ceEEeecCH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE---GFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~---G~c~rL~t~ 71 (182)
|++||+.++.++.+|.+++||+. ...||+..|. .+++.++-.||.|||||-+- |.|+-+...
T Consensus 332 VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 332 VISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred EEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 68999999999999999999965 3468876553 68999999999999999643 889988864
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=97.91 E-value=4.7e-06 Score=79.33 Aligned_cols=52 Identities=27% Similarity=0.494 Sum_probs=45.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t 70 (182)
+++|||++|-+|.|++|++||..|+ |-+.++-.||.||+||.+. |.++-+.+
T Consensus 332 vLVaTd~lerGIDI~~vd~VI~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 332 GVATTNALELGVDISGLDAVVIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred EEEECchHhccCCcccccEEEEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeC
Confidence 5899999999999999999998875 4467899999999999755 88887775
No 36
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=97.81 E-value=2.1e-05 Score=73.71 Aligned_cols=55 Identities=24% Similarity=0.460 Sum_probs=45.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEED 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~~ 73 (182)
|+|||++|+.+|.||+|.+||+.++ |.+-.+-.||.||+||.+. |.++-+++..+
T Consensus 298 ILVATdv~arGIDip~V~~VI~~d~------------------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 298 ILIATDVAARGLDVERISLVVNYDI------------------PMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred EEEEcchHhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhccccCCCCcceEEEEechHH
Confidence 6899999999999999999997433 3456778999999999765 99999988653
No 37
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.76 E-value=2.7e-05 Score=73.50 Aligned_cols=53 Identities=30% Similarity=0.557 Sum_probs=43.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t 70 (182)
|+|||+++|.++.||++..||. ||+.. -+-++..||+||+||.+ +|.||-+++
T Consensus 534 ILVaT~vie~GiDip~v~~VIi--------~~~~r---------~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 534 ILVATTVIEVGVDVPNATVMVI--------ENAER---------FGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred EEEECcceeeCcccCCCcEEEE--------eCCCC---------CCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 6899999999999999999993 33321 12367899999999975 599999985
No 38
>KOG0354|consensus
Probab=97.75 E-value=3.2e-05 Score=72.92 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=45.4
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~ 72 (182)
|+|||.|||=++.|+.+..|| .||..++ + -...||+|| ||.+.|+|+-|++..
T Consensus 477 vLVATSV~EEGLDI~ec~lVI--------cYd~~sn-------p---IrmIQrrGR-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 477 VLVATSVAEEGLDIGECNLVI--------CYDYSSN-------P---IRMVQRRGR-GRARNSKCVLLTTGS 529 (746)
T ss_pred EEEEecchhccCCcccccEEE--------EecCCcc-------H---HHHHHHhcc-ccccCCeEEEEEcch
Confidence 689999999999999999999 5666554 2 357899999 999999999999943
No 39
>PRK13766 Hef nuclease; Provisional
Probab=97.70 E-value=2.7e-05 Score=74.03 Aligned_cols=54 Identities=30% Similarity=0.544 Sum_probs=46.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~ 72 (182)
|++||++++.++.+|++.+|| .||+. .+.....||+||+||.++|.+|.|+++.
T Consensus 426 vLvaT~~~~eGldi~~~~~VI--------~yd~~----------~s~~r~iQR~GR~gR~~~~~v~~l~~~~ 479 (773)
T PRK13766 426 VLVSTSVAEEGLDIPSVDLVI--------FYEPV----------PSEIRSIQRKGRTGRQEEGRVVVLIAKG 479 (773)
T ss_pred EEEECChhhcCCCcccCCEEE--------EeCCC----------CCHHHHHHHhcccCcCCCCEEEEEEeCC
Confidence 589999999999999999999 46652 3456788999999999999999999843
No 40
>PRK10689 transcription-repair coupling factor; Provisional
Probab=97.63 E-value=3.7e-05 Score=76.26 Aligned_cols=52 Identities=29% Similarity=0.492 Sum_probs=40.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCC-CCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPG-TGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~-~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t 70 (182)
|+|||+|+|.++.||+|.+||= +++. -+ -++..||+||+||.+ .|.||-++.
T Consensus 864 VLVaTdIierGIDIP~v~~VIi--------~~ad~fg----------laq~~Qr~GRvGR~g~~g~a~ll~~ 917 (1147)
T PRK10689 864 VLVCTTIIETGIDIPTANTIII--------ERADHFG----------LAQLHQLRGRVGRSHHQAYAWLLTP 917 (1147)
T ss_pred EEEECchhhcccccccCCEEEE--------ecCCCCC----------HHHHHHHhhccCCCCCceEEEEEeC
Confidence 6899999999999999999981 1111 11 146789999999965 499998874
No 41
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=97.56 E-value=4.9e-05 Score=73.99 Aligned_cols=53 Identities=32% Similarity=0.609 Sum_probs=42.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCC-CCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPG-TGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~-~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~ 71 (182)
|+|||+++|.++.||++..||- +|+. .+ -++..||+||+||.+ .|.||-|++.
T Consensus 715 ILVaT~iie~GIDIp~v~~VIi--------~~a~~~g----------ls~l~Qr~GRvGR~g~~g~aill~~~ 769 (926)
T TIGR00580 715 VLVCTTIIETGIDIPNANTIII--------ERADKFG----------LAQLYQLRGRVGRSKKKAYAYLLYPH 769 (926)
T ss_pred EEEECChhhcccccccCCEEEE--------ecCCCCC----------HHHHHHHhcCCCCCCCCeEEEEEECC
Confidence 6899999999999999999983 2321 12 246789999999965 5999999864
No 42
>PRK00254 ski2-like helicase; Provisional
Probab=97.43 E-value=0.00019 Score=68.09 Aligned_cols=61 Identities=25% Similarity=0.297 Sum_probs=46.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc---ccceEEeecCH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE---AEGFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~---~~G~c~rL~t~ 71 (182)
|++||+.++.++.+|.++.||.... .|+ ..+ ...++.++-.||.|||||- ..|.++-+.+.
T Consensus 324 VLvaT~tLa~Gvnipa~~vVI~~~~----~~~-~~~-----~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~ 387 (720)
T PRK00254 324 VITATPTLSAGINLPAFRVIIRDTK----RYS-NFG-----WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATT 387 (720)
T ss_pred EEEeCcHHhhhcCCCceEEEECCce----EcC-CCC-----ceeCCHHHHHHhhhccCCCCcCCCceEEEEecC
Confidence 6899999999999999999995442 343 122 2345567889999999995 35888877653
No 43
>KOG0331|consensus
Probab=97.43 E-value=0.0002 Score=65.45 Aligned_cols=57 Identities=23% Similarity=0.518 Sum_probs=46.3
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCc-cccceEEeecCHHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGR-EAEGFCYRMYSEEDFR 75 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr-~~~G~c~rL~t~~~~~ 75 (182)
|+||||+|--+|.||||++||+.=+.+ +=..=.+|.||.|| .+.|..|-+|+.+.+.
T Consensus 394 vLVATdVAaRGLDi~dV~lVInydfP~------------------~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 394 VLVATDVAARGLDVPDVDLVINYDFPN------------------NVEDYVHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred eEEEcccccccCCCccccEEEeCCCCC------------------CHHHHHhhcCccccCCCCceEEEEEeHHHHH
Confidence 689999999999999999999766533 23445678899999 4459999999988774
No 44
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=97.42 E-value=0.00011 Score=53.28 Aligned_cols=49 Identities=33% Similarity=0.542 Sum_probs=40.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEe
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYR 67 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~r 67 (182)
++++|+.++.++.+|++..||-.+. +.+.....|+.||+||.+ .|.|+-
T Consensus 81 ili~t~~~~~G~d~~~~~~vi~~~~------------------~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 81 VLVATDVIARGIDLPNVSVVINYDL------------------PWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred EEEEcChhhcCcChhhCCEEEEeCC------------------CCCHHHheecccccccCCCCceEEe
Confidence 5789999999999999998884444 667888899999999987 577653
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=97.32 E-value=0.00023 Score=69.05 Aligned_cols=52 Identities=25% Similarity=0.322 Sum_probs=42.3
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc----ccceEEeecC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE----AEGFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~----~~G~c~rL~t 70 (182)
|++||+.+|-+|.||+|++||.-|. |-|-++..||.||+||. ..|.++-+..
T Consensus 343 vLVaTs~Le~GIDip~Vd~VI~~~~------------------P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 343 VVVSSTSLELGIDIGYIDLVVLLGS------------------PKSVSRLLQRIGRAGHRLGEVSKGRIIVVDR 398 (876)
T ss_pred EEEECChHHhcCCCCCCcEEEEeCC------------------CCCHHHHHHhcccCCCCCCCCCcEEEEEcCc
Confidence 6899999999999999999995433 45778999999999985 2377776543
No 46
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=97.31 E-value=0.00021 Score=67.18 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=46.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t 70 (182)
|+|||++++.++.+|++++||-+...+. ..|-+..+-.||.||+||...|.|+-+.+
T Consensus 499 vlV~t~~L~rGfdlp~v~lVii~d~eif-------------G~~~~~~~yiqr~GR~gR~~~G~~i~~~~ 555 (652)
T PRK05298 499 VLVGINLLREGLDIPEVSLVAILDADKE-------------GFLRSERSLIQTIGRAARNVNGKVILYAD 555 (652)
T ss_pred EEEEeCHHhCCccccCCcEEEEeCCccc-------------ccCCCHHHHHHHhccccCCCCCEEEEEec
Confidence 4689999999999999999985543221 12346778899999999998999998887
No 47
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=97.23 E-value=0.00024 Score=66.88 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=45.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~ 71 (182)
|+||||+++.++.+|++++||-+.-.+. ..+-|..+..||.||+||...|+++-+.+.
T Consensus 495 VLV~t~~L~rGfDiP~v~lVvi~Dadif-------------G~p~~~~~~iqriGRagR~~~G~vi~~~~~ 552 (655)
T TIGR00631 495 VLVGINLLREGLDLPEVSLVAILDADKE-------------GFLRSERSLIQTIGRAARNVNGKVIMYADK 552 (655)
T ss_pred EEEEcChhcCCeeeCCCcEEEEeCcccc-------------cCCCCHHHHHHHhcCCCCCCCCEEEEEEcC
Confidence 5689999999999999999884432111 124466788999999999999999877764
No 48
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=97.19 E-value=0.0003 Score=67.75 Aligned_cols=90 Identities=12% Similarity=0.161 Sum_probs=54.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceE-EeecCHHHH---H
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFC-YRMYSEEDF---R 75 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c-~rL~t~~~~---~ 75 (182)
|+|||+++|.+|.|+. .+||.- + ...++..||.||+||.+. |.+ ..+++.+ | .
T Consensus 339 ILVATdVaerGLDId~-d~VI~d--------~------------aP~esyIQRiGRtgR~G~~~~~~i~vv~~~-~~~~~ 396 (844)
T TIGR02621 339 YLVCTSAGEVGVNISA-DHLVCD--------L------------APFESMQQRFGRVNRFGELQACQIAVVHLD-LGKDQ 396 (844)
T ss_pred EEeccchhhhcccCCc-ceEEEC--------C------------CCHHHHHHHhcccCCCCCCCCceEEEEeec-cCCCc
Confidence 5799999999999987 555521 0 123788999999999754 222 2222221 1 0
Q ss_pred hccCCCCChhccCChHHHHHHHHhcCC-CcccccCcCCC
Q psy17746 76 RMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKP 113 (182)
Q Consensus 76 ~l~~~~~PeI~r~~L~~~vL~lk~lg~-~~~~f~~~dpP 113 (182)
....+ -|+++++.+..+.+..+-.|. ++..|..++++
T Consensus 397 ~~~vY-~~~~l~~t~~~L~~~~~~~~~~~~~al~~l~~~ 434 (844)
T TIGR02621 397 DFDVY-GKKIDKSTWSTLKKLQQLKGKNKRAALGVLAIK 434 (844)
T ss_pred ccCCC-CHHHHHHHHHHHHHHHhccccCCHHHHhhcCcc
Confidence 11112 367888777766555554455 66666666543
No 49
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.04 E-value=0.00039 Score=59.95 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=36.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc--c---eEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE--G---FCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~--G---~c~rL~t~~ 72 (182)
|+|||+++|.++.|+ +.+||. | +.+-++..||.||+||.+. | ..|-++...
T Consensus 281 ilvaT~~~~~GiDi~-~~~vi~--------~------------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 281 VIVATQVIEASLDIS-ADVMIT--------E------------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred EEEECcchhceeccC-CCEEEE--------c------------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 589999999999995 566652 1 1234678999999999643 2 566666543
No 50
>KOG0345|consensus
Probab=96.97 E-value=0.0005 Score=62.00 Aligned_cols=73 Identities=22% Similarity=0.445 Sum_probs=48.7
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCC---ccccceEEeecCHHHH-Hh
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAG---REAEGFCYRMYSEEDF-RR 76 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graG---r~~~G~c~rL~t~~~~-~~ 76 (182)
|.++|++|--+|.||||++||. |||-... ++-..|+||+| |.+..+.|-+=.+++| +-
T Consensus 310 vl~~TDVaARGlDip~iD~VvQ--------~DpP~~~----------~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveF 371 (567)
T KOG0345|consen 310 VLFCTDVAARGLDIPGIDLVVQ--------FDPPKDP----------SSFVHRCGRTARAGREGNAIVFLNPREEAYVEF 371 (567)
T ss_pred eEEeehhhhccCCCCCceEEEe--------cCCCCCh----------hHHHhhcchhhhccCccceEEEecccHHHHHHH
Confidence 5789999999999999999993 5554332 22334555554 4444556666667788 45
Q ss_pred ccCCCCChhccCChH
Q psy17746 77 MNKNTVPEIQRTNLA 91 (182)
Q Consensus 77 l~~~~~PeI~r~~L~ 91 (182)
|.-...|++-+.+..
T Consensus 372 l~i~~~v~le~~~~e 386 (567)
T KOG0345|consen 372 LRIKGKVELERIDTE 386 (567)
T ss_pred HHhcCccchhhhccc
Confidence 556667777765544
No 51
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=96.90 E-value=0.00069 Score=68.74 Aligned_cols=46 Identities=33% Similarity=0.476 Sum_probs=39.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccce
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGF 64 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~ 64 (182)
|++||+.+|-+|.|++|+.||.-|. |.|-++..||.||+||...|.
T Consensus 330 vLVATssLELGIDIg~VDlVIq~gs------------------P~sVas~LQRiGRAGR~~gg~ 375 (1490)
T PRK09751 330 CVVATSSLELGIDMGAVDLVIQVAT------------------PLSVASGLQRIGRAGHQVGGV 375 (1490)
T ss_pred EEEeCcHHHccCCcccCCEEEEeCC------------------CCCHHHHHHHhCCCCCCCCCc
Confidence 6899999999999999999997553 678899999999999964443
No 52
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=96.85 E-value=0.0012 Score=62.27 Aligned_cols=54 Identities=31% Similarity=0.324 Sum_probs=43.6
Q ss_pred CEEEecccccCCCCC---Cce-----EEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCH
Q psy17746 1 IILATNIAETSITVP---GIK-----YVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~---~v~-----~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~ 71 (182)
|.||||+|--++.|+ +|+ +||.+.+. -|+..=.||.||+||.+ +|.|.-+++.
T Consensus 524 VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P------------------~s~r~y~hr~GRTGRqG~~G~s~~~is~ 585 (656)
T PRK12898 524 ITVATNMAGRGTDIKLEPGVAARGGLHVILTERH------------------DSARIDRQLAGRCGRQGDPGSYEAILSL 585 (656)
T ss_pred EEEEccchhcccCcCCccchhhcCCCEEEEcCCC------------------CCHHHHHHhcccccCCCCCeEEEEEech
Confidence 579999999999998 776 89866553 34455569999999977 5999999986
Q ss_pred H
Q psy17746 72 E 72 (182)
Q Consensus 72 ~ 72 (182)
+
T Consensus 586 e 586 (656)
T PRK12898 586 E 586 (656)
T ss_pred h
Confidence 4
No 53
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=96.72 E-value=0.0016 Score=62.57 Aligned_cols=54 Identities=30% Similarity=0.362 Sum_probs=44.6
Q ss_pred CEEEecccccCCCC---CCce-----EEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCH
Q psy17746 1 IILATNIAETSITV---PGIK-----YVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti---~~v~-----~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~ 71 (182)
|.||||+|--++.| ++|. +||.+.+ |-|...=.||.||+||.+ +|.+.-+.+.
T Consensus 479 VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~------------------p~s~r~y~qr~GRtGR~G~~G~s~~~is~ 540 (790)
T PRK09200 479 VTVATNMAGRGTDIKLGEGVHELGGLAVIGTER------------------MESRRVDLQLRGRSGRQGDPGSSQFFISL 540 (790)
T ss_pred EEEEccchhcCcCCCcccccccccCcEEEeccC------------------CCCHHHHHHhhccccCCCCCeeEEEEEcc
Confidence 57999999999999 6998 9996655 345566689999999977 5999988885
Q ss_pred H
Q psy17746 72 E 72 (182)
Q Consensus 72 ~ 72 (182)
+
T Consensus 541 e 541 (790)
T PRK09200 541 E 541 (790)
T ss_pred h
Confidence 4
No 54
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=96.40 E-value=0.0034 Score=57.54 Aligned_cols=54 Identities=28% Similarity=0.556 Sum_probs=40.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~ 72 (182)
|.|||++|--+|-||+|.+||+--.. -+...-.+|.||+||.+ .|..+-+++.+
T Consensus 326 vLVaTDvaaRGiDi~~v~~VinyD~p------------------~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 326 VLVATDVAARGLDIPDVSHVINYDLP------------------LDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred EEEEechhhccCCccccceeEEccCC------------------CCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 68999999999999999999854443 22333345677777753 49999999853
No 55
>KOG0336|consensus
Probab=96.38 E-value=0.00088 Score=59.85 Aligned_cols=77 Identities=27% Similarity=0.409 Sum_probs=51.3
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEE-EeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHHHh---
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVK-QKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDFRR--- 76 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k-~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~~~--- 76 (182)
|.+||++|--++.++||++|++--|.+ ...|-.+.| |.|||||+ |...-+++++.+..
T Consensus 518 ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvG----------------rtGRaGr~--G~sis~lt~~D~~~a~e 579 (629)
T KOG0336|consen 518 ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVG----------------RTGRAGRT--GTSISFLTRNDWSMAEE 579 (629)
T ss_pred EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhc----------------ccccCCCC--cceEEEEehhhHHHHHH
Confidence 579999999999999999999877655 223433333 55666665 77888888876632
Q ss_pred ------ccCCCCChhccCChHHHHH
Q psy17746 77 ------MNKNTVPEIQRTNLASTAL 95 (182)
Q Consensus 77 ------l~~~~~PeI~r~~L~~~vL 95 (182)
-.++.+|+=++..-+..-|
T Consensus 580 LI~ILe~aeQevPdeL~~mAeryk~ 604 (629)
T KOG0336|consen 580 LIQILERAEQEVPDELVRMAERYKL 604 (629)
T ss_pred HHHHHHHhhhhCcHHHHHHHHHHHh
Confidence 1245566655554444433
No 56
>KOG4150|consensus
Probab=96.27 E-value=0.0029 Score=58.72 Aligned_cols=43 Identities=40% Similarity=0.604 Sum_probs=39.5
Q ss_pred EEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc
Q psy17746 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE 62 (182)
Q Consensus 2 ilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~ 62 (182)
|+|||..|-+|.|.+.+.|+-+|| |.|-++..|-.|||||...
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred EEecchhhhccccccceeEEEccC------------------chhHHHHHHHhccccccCC
Confidence 799999999999999999999998 6788999999999998543
No 57
>KOG0333|consensus
Probab=96.27 E-value=0.0044 Score=56.83 Aligned_cols=55 Identities=29% Similarity=0.532 Sum_probs=43.7
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEED 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~~ 73 (182)
|.||||+|--+|.||||..||+--+.|.. ..=..|.||.||.+. |...-+||.+.
T Consensus 570 IlVaTDvAgRGIDIpnVSlVinydmaksi------------------eDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 570 ILVATDVAGRGIDIPNVSLVINYDMAKSI------------------EDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred EEEEecccccCCCCCccceeeecchhhhH------------------HHHHHHhccccccccCceeEEEeccch
Confidence 68999999999999999999976665522 233467788888655 99999999875
No 58
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=96.19 E-value=0.005 Score=58.89 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=40.3
Q ss_pred CEEEecccccCCCCC---------CceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecC
Q psy17746 1 IILATNIAETSITVP---------GIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~---------~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t 70 (182)
|.+|||+|--++.|+ |+.+||. |++.+ .+.. .||+||+||.+ ||.+.-+.+
T Consensus 475 VlIATdmAgRGtDI~l~~~v~~~GGL~vIit--------~~~ps----------~rid-~qr~GRtGRqG~~G~s~~~is 535 (762)
T TIGR03714 475 VTVATSMAGRGTDIKLGKGVAELGGLAVIGT--------ERMEN----------SRVD-LQLRGRSGRQGDPGSSQFFVS 535 (762)
T ss_pred EEEEccccccccCCCCCccccccCCeEEEEe--------cCCCC----------cHHH-HHhhhcccCCCCceeEEEEEc
Confidence 579999999999998 7777663 33322 2444 89999999977 599988887
Q ss_pred HH
Q psy17746 71 EE 72 (182)
Q Consensus 71 ~~ 72 (182)
.+
T Consensus 536 ~e 537 (762)
T TIGR03714 536 LE 537 (762)
T ss_pred cc
Confidence 54
No 59
>PHA02558 uvsW UvsW helicase; Provisional
Probab=96.18 E-value=0.0034 Score=57.27 Aligned_cols=46 Identities=33% Similarity=0.407 Sum_probs=36.7
Q ss_pred CEEEe-cccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccce
Q psy17746 1 IILAT-NIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGF 64 (182)
Q Consensus 1 vilaT-niaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~ 64 (182)
|+||| +++..++.+|++..||-. +| .-|+.+-.||.||+||..+|+
T Consensus 397 vLvaT~~~l~eG~Dip~ld~vIl~--------~p----------~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 397 IIVASYGVFSTGISIKNLHHVIFA--------HP----------SKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEEEEcceeccccccccccEEEEe--------cC----------CcchhhhhhhhhccccCCCCC
Confidence 57888 899999999999999821 11 225677889999999998876
No 60
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.17 E-value=0.0038 Score=59.55 Aligned_cols=55 Identities=29% Similarity=0.390 Sum_probs=42.7
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccc-eE-------EeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEG-FC-------YRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G-~c-------~rL~t~~ 72 (182)
++++|+++..+|.+|++.+||-- ++. +-|+.+..||.||++|.++| .+ |.|.+++
T Consensus 545 vLv~SkVgdeGIDlP~a~vvI~~--------s~~---------~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 545 TIFLSKVGDTSIDLPEANVLIQI--------SSH---------YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred EEEEecccccccCCCCCCEEEEe--------CCC---------CCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 47899999999999999999821 111 23788999999999998874 34 7787743
No 61
>KOG0344|consensus
Probab=96.01 E-value=0.0047 Score=56.90 Aligned_cols=56 Identities=25% Similarity=0.512 Sum_probs=45.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~~~ 74 (182)
|.+|||+.+.++.+-||..||+ || +|-|..+-..|.||.||.++ |+.|-+||+++.
T Consensus 441 vLicTdll~RGiDf~gvn~VIn--------yD----------~p~s~~syihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 441 VLICTDLLARGIDFKGVNLVIN--------YD----------FPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred EEEehhhhhccccccCcceEEe--------cC----------CCchhHHHHHHhhccCCCCCCcceEEEeccccc
Confidence 5789999999999999999997 54 34455566677888888666 999999998654
No 62
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=95.97 E-value=0.0073 Score=57.63 Aligned_cols=54 Identities=31% Similarity=0.388 Sum_probs=42.4
Q ss_pred CEEEecccccCCCCCC--ce-----EEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHH
Q psy17746 1 IILATNIAETSITVPG--IK-----YVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~--v~-----~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~ 72 (182)
|.+|||+|--++.|+. |. +||.+-+ +-|+..=.||+||+||.+. |.+.-+.+.+
T Consensus 456 VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~------------------p~s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 456 VTIATNMAGRGTDIKLEEVKELGGLYVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred EEEEeccccCCcCCCccchhhcCCcEEEecCC------------------CCcHHHHHHHhccccCCCCCcceEEEEecc
Confidence 6799999999988877 44 7775544 5567778899999999765 9877777654
No 63
>KOG0335|consensus
Probab=95.96 E-value=0.0041 Score=56.39 Aligned_cols=52 Identities=27% Similarity=0.518 Sum_probs=40.3
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t 70 (182)
|+||||||..++.|++|++||+--+... =..-..|.||.||.+- |...-|+.
T Consensus 390 vlVaT~VaaRGlDi~~V~hVInyDmP~d------------------~d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 390 VLVATNVAARGLDIPNVKHVINYDMPAD------------------IDDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred eEEEehhhhcCCCCCCCceeEEeecCcc------------------hhhHHHhccccccCCCCceeEEEec
Confidence 6899999999999999999995333222 1234568999999775 88888887
No 64
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=95.94 E-value=0.0056 Score=58.79 Aligned_cols=54 Identities=33% Similarity=0.434 Sum_probs=43.0
Q ss_pred CEEEecccccCCCC---CCce-----EEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCH
Q psy17746 1 IILATNIAETSITV---PGIK-----YVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti---~~v~-----~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~ 71 (182)
|.||||+|--++.| ++|. +||.+-+ +-|+..=.||.||+||.+. |.+.-+.+-
T Consensus 491 VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~------------------pes~ri~~Ql~GRtGRqG~~G~s~~~~sl 552 (796)
T PRK12906 491 VTIATNMAGRGTDIKLGPGVKELGGLAVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFYLSL 552 (796)
T ss_pred EEEEeccccCCCCCCCCcchhhhCCcEEEeeec------------------CCcHHHHHHHhhhhccCCCCcceEEEEec
Confidence 67999999999999 5888 8885544 4566777899999999765 987766665
Q ss_pred H
Q psy17746 72 E 72 (182)
Q Consensus 72 ~ 72 (182)
+
T Consensus 553 e 553 (796)
T PRK12906 553 E 553 (796)
T ss_pred c
Confidence 4
No 65
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=95.89 E-value=0.0077 Score=52.82 Aligned_cols=56 Identities=21% Similarity=0.395 Sum_probs=40.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc--c-ce-EEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA--E-GF-CYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~--~-G~-c~rL~t~~ 72 (182)
++++|.|.|-++|+|+|...| .+...+ --++++..|=+||+||.- | |. ||-=|...
T Consensus 358 lLiTTTILERGVTfp~vdV~V---------lgaeh~-------vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 358 LLITTTILERGVTFPNVDVFV---------LGAEHR-------VFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred EEEEeehhhcccccccceEEE---------ecCCcc-------cccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 478999999999999998544 122222 257899999999999943 3 54 66555543
No 66
>PRK09694 helicase Cas3; Provisional
Probab=95.69 E-value=0.0058 Score=59.45 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=31.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA 61 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~ 61 (182)
|+|||+|+|.|+.| ++.++|-- ...-++..||+||+||..
T Consensus 624 ILVaTQViE~GLDI-d~DvlItd--------------------laPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 624 ILVATQVVEQSLDL-DFDWLITQ--------------------LCPVDLLFQRLGRLHRHH 663 (878)
T ss_pred EEEECcchhheeec-CCCeEEEC--------------------CCCHHHHHHHHhccCCCC
Confidence 68999999999999 46666621 122468999999999974
No 67
>KOG0330|consensus
Probab=95.66 E-value=0.0054 Score=54.43 Aligned_cols=53 Identities=19% Similarity=0.452 Sum_probs=38.9
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~ 71 (182)
|.+||++|--++.||.|+.||+--+... -..=..|.||.||.+ +|+..-|-|+
T Consensus 353 iLv~TDVaSRGLDip~Vd~VVNyDiP~~------------------skDYIHRvGRtaRaGrsG~~ItlVtq 406 (476)
T KOG0330|consen 353 ILVCTDVASRGLDIPHVDVVVNYDIPTH------------------SKDYIHRVGRTARAGRSGKAITLVTQ 406 (476)
T ss_pred EEEecchhcccCCCCCceEEEecCCCCc------------------HHHHHHHcccccccCCCcceEEEEeh
Confidence 5799999999999999999997665432 223344555555543 4999988887
No 68
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.62 E-value=0.0082 Score=54.99 Aligned_cols=61 Identities=26% Similarity=0.364 Sum_probs=39.2
Q ss_pred CEEEecccccCCCCCCceEEE--e--CCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc-ccceEE-eecCH
Q psy17746 1 IILATNIAETSITVPGIKYVI--D--SGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE-AEGFCY-RMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VI--D--~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~-~~G~c~-rL~t~ 71 (182)
|+|+|.+++-++.+|+|..|+ | .++.. ..+.-.--.-+...|++|||||. .+|.++ .-|..
T Consensus 315 ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~----------pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p 381 (505)
T TIGR00595 315 ILIGTQMIAKGHHFPNVTLVGVLDADSGLHS----------PDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNP 381 (505)
T ss_pred EEEeCcccccCCCCCcccEEEEEcCcccccC----------cccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCC
Confidence 689999999999999999875 2 22211 11100001234578999999994 458877 44443
No 69
>KOG0338|consensus
Probab=95.45 E-value=0.0039 Score=57.07 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=28.3
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEE-EeEEeCCCC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVK-QKTHHPGTG 36 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k-~~~~~~~~~ 36 (182)
|.+||++|--++.|+||..||+--..+ ...|-.+.|
T Consensus 479 vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVG 515 (691)
T KOG0338|consen 479 VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVG 515 (691)
T ss_pred EEEEechhhccCCccceeEEEeccCchhHHHHHHHhh
Confidence 579999999999999999999877655 333544444
No 70
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.31 E-value=0.011 Score=56.16 Aligned_cols=61 Identities=26% Similarity=0.373 Sum_probs=40.0
Q ss_pred CEEEecccccCCCCCCceEEE--e--CCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCc-cccceEE-eecCH
Q psy17746 1 IILATNIAETSITVPGIKYVI--D--SGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGR-EAEGFCY-RMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VI--D--~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr-~~~G~c~-rL~t~ 71 (182)
|+|+|++++-++.+|+|..|+ | ..+.. +-|+. .--.=+...|++||+|| ..+|.++ .-|..
T Consensus 483 ILVgT~~iakG~d~p~v~lV~il~aD~~l~~-pdfra---------~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 483 ILIGTQMLAKGHDFPNVTLVGVLDADLGLFS-PDFRA---------SERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred EEEEChhhccCCCCCCcCEEEEEcCchhccC-Cccch---------HHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 689999999999999999885 2 22211 00100 00113457899999999 5568888 44443
No 71
>KOG0342|consensus
Probab=95.12 E-value=0.061 Score=49.02 Aligned_cols=76 Identities=20% Similarity=0.419 Sum_probs=54.7
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHHHH---Hh
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEEDF---RR 76 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~~~---~~ 76 (182)
|.||||+|--++.||+|.-||.-|. |-...+=..|.||.||.+. |+.+-+...++- ..
T Consensus 383 IL~cTDVaARGlD~P~V~~VvQ~~~------------------P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~ 444 (543)
T KOG0342|consen 383 ILVCTDVAARGLDIPDVDWVVQYDP------------------PSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRY 444 (543)
T ss_pred eEEecchhhccCCCCCceEEEEeCC------------------CCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHH
Confidence 5799999999999999999995444 3346677889999999665 888877776532 22
Q ss_pred -----ccCCCCChhccCChHHHH
Q psy17746 77 -----MNKNTVPEIQRTNLASTA 94 (182)
Q Consensus 77 -----l~~~~~PeI~r~~L~~~v 94 (182)
+.+...|++.-.++..+.
T Consensus 445 LK~lpl~~~e~~~~~~~~v~~~~ 467 (543)
T KOG0342|consen 445 LKKLPLEEFEFPPLKPEDVQSQL 467 (543)
T ss_pred HhhCCCcccCCCCCCHHHHHHHH
Confidence 335556666555555543
No 72
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.11 E-value=0.026 Score=53.08 Aligned_cols=53 Identities=32% Similarity=0.584 Sum_probs=43.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCC-CCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPG-TGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~-~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~ 71 (182)
|.|||.+.|.+|.+|+.+..| .+|+. -|+ |+..|=+||+||..- +.|+=+|..
T Consensus 536 ILVaTTVIEVGVdVPnATvMV--------Ie~AERFGL----------aQLHQLRGRVGRG~~qSyC~Ll~~~ 590 (677)
T COG1200 536 ILVATTVIEVGVDVPNATVMV--------IENAERFGL----------AQLHQLRGRVGRGDLQSYCVLLYKP 590 (677)
T ss_pred EEEEeeEEEecccCCCCeEEE--------EechhhhhH----------HHHHHhccccCCCCcceEEEEEeCC
Confidence 579999999999999988655 45554 443 789999999999655 889999875
No 73
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.83 E-value=0.033 Score=55.20 Aligned_cols=53 Identities=34% Similarity=0.653 Sum_probs=40.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCC-CCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPG-TGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~-~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~ 71 (182)
|.|||-|.||+|.||++--.| +.+.. -|+ ||.-|=+||+||... |.||-||..
T Consensus 858 VLv~TTIIEtGIDIPnANTiI--------Ie~AD~fGL----------sQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 858 VLVCTTIIETGIDIPNANTII--------IERADKFGL----------AQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred EEEEeeeeecCcCCCCCceEE--------EeccccccH----------HHHHHhccccCCccceEEEEEeecC
Confidence 679999999999999976444 11111 232 788999999999665 999999985
No 74
>KOG0340|consensus
Probab=94.74 E-value=0.013 Score=51.50 Aligned_cols=54 Identities=26% Similarity=0.569 Sum_probs=40.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEe-EEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQK-THHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~-~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~ 72 (182)
|++||++|--++.||.|..||+--..+.+ .|-.+.| |..||||. |...-+.|+-
T Consensus 307 iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvG----------------RtARAGR~--G~aiSivt~r 361 (442)
T KOG0340|consen 307 ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVG----------------RTARAGRK--GMAISIVTQR 361 (442)
T ss_pred EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhc----------------chhcccCC--cceEEEechh
Confidence 58999999999999999999988877633 3555555 66677775 5566666643
No 75
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=94.72 E-value=0.022 Score=55.81 Aligned_cols=55 Identities=31% Similarity=0.397 Sum_probs=40.1
Q ss_pred CEEEecccccCCCCC---CceEE-----EeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCH
Q psy17746 1 IILATNIAETSITVP---GIKYV-----IDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~---~v~~V-----ID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~ 71 (182)
|.||||+|--++.|+ +|..| |.+-+ +-|+-.=.||+||+||.+. |...-+.+.
T Consensus 649 VtIATNMAGRGtDIkl~~~V~~vGGL~VIgter------------------hes~Rid~Ql~GRtGRqGdpGsS~ffvSl 710 (1025)
T PRK12900 649 VTIATNMAGRGTDIKLGEGVRELGGLFILGSER------------------HESRRIDRQLRGRAGRQGDPGESVFYVSL 710 (1025)
T ss_pred EEEeccCcCCCCCcCCccchhhhCCceeeCCCC------------------CchHHHHHHHhhhhhcCCCCcceEEEech
Confidence 679999999999998 55433 43333 3344455799999999665 999888886
Q ss_pred HH
Q psy17746 72 ED 73 (182)
Q Consensus 72 ~~ 73 (182)
++
T Consensus 711 eD 712 (1025)
T PRK12900 711 ED 712 (1025)
T ss_pred hH
Confidence 53
No 76
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=94.64 E-value=0.044 Score=51.16 Aligned_cols=56 Identities=36% Similarity=0.515 Sum_probs=45.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc-ccceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE-AEGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~-~~G~c~rL~t~~~~ 74 (182)
|||||+.---+|.-|||+|||--++. -|=++=-|=.|||||- .|-.|+=||+.++.
T Consensus 283 iiVAT~AFGMGIdKpdVRfViH~~lP------------------~s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 283 VMVATNAFGMGIDKPDVRFVIHYDLP------------------GSIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred EEEEeccccCccCCCCceEEEEecCC------------------CCHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 68999999999999999999966653 3445566888999994 45789999997664
No 77
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=94.60 E-value=0.011 Score=57.36 Aligned_cols=43 Identities=37% Similarity=0.429 Sum_probs=38.9
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEe-eHHHHHhhcCcCCccc
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSI-SQAQAWQRTGRAGREA 61 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~i-sk~~a~qR~graGr~~ 61 (182)
+++|||-.|..+.|-++.-||-+|+ |. |..+..||+|||||..
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~ 410 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGY------------------PGVSVLSFRQRAGRAGRRG 410 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCC------------------CCchHHHHHHhhhhccCCC
Confidence 4799999999999999999998888 33 7789999999999986
No 78
>KOG0348|consensus
Probab=94.54 E-value=0.039 Score=50.94 Aligned_cols=76 Identities=20% Similarity=0.372 Sum_probs=52.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCC---ccccceEEeecCHHHHHhc
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAG---REAEGFCYRMYSEEDFRRM 77 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graG---r~~~G~c~rL~t~~~~~~l 77 (182)
|.|||++|--++.+|+|+.|| .||+ |-|-+.-..|.||.. +.+...-|-+=++.+|...
T Consensus 500 VLLcTDVAaRGLDlP~V~~vV--------QYd~----------P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~ 561 (708)
T KOG0348|consen 500 VLLCTDVAARGLDLPHVGLVV--------QYDP----------PFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNY 561 (708)
T ss_pred EEEehhhhhccCCCCCcCeEE--------EeCC----------CCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHH
Confidence 679999999999999999998 4554 445566667777654 4544556777778888554
Q ss_pred cCCCCChhccCChHHHH
Q psy17746 78 NKNTVPEIQRTNLASTA 94 (182)
Q Consensus 78 ~~~~~PeI~r~~L~~~v 94 (182)
.+.-.+.++.-++..+.
T Consensus 562 l~~~~~~l~q~~~~~~l 578 (708)
T KOG0348|consen 562 LKKHHIMLLQFDMEILL 578 (708)
T ss_pred HHhhcchhhccchhhhh
Confidence 44444556666665543
No 79
>KOG0339|consensus
Probab=94.09 E-value=0.05 Score=50.07 Aligned_cols=56 Identities=30% Similarity=0.645 Sum_probs=44.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~~~ 74 (182)
|.+||++|--.++|++++-||+.-+.+. + ..-.||.||.||.+. |+.|-|.|+.+-
T Consensus 521 VlvatDvaargldI~~ikTVvnyD~ard--------I----------dththrigrtgRag~kGvayTlvTeKDa 577 (731)
T KOG0339|consen 521 VLVATDVAARGLDIPSIKTVVNYDFARD--------I----------DTHTHRIGRTGRAGEKGVAYTLVTEKDA 577 (731)
T ss_pred eEEEeeHhhcCCCccccceeecccccch--------h----------HHHHHHhhhcccccccceeeEEechhhH
Confidence 6799999999999999999996555432 1 234588899888766 999999998754
No 80
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=93.12 E-value=0.083 Score=52.03 Aligned_cols=54 Identities=19% Similarity=0.123 Sum_probs=41.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc---ceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE---GFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~---G~c~rL~t~~ 72 (182)
|+|||+++..++.++.+.+||...+ |-+-..-+||.||+||-+. -..|.++.+.
T Consensus 549 VLIsTdvgseGlNlq~a~~VInfDl------------------P~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~ 605 (956)
T PRK04914 549 VLLCSEIGSEGRNFQFASHLVLFDL------------------PFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEG 605 (956)
T ss_pred EEEechhhccCCCcccccEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEEccCCC
Confidence 5799999999999999999995444 4456778899999888443 4577777654
No 81
>KOG0341|consensus
Probab=92.92 E-value=0.11 Score=46.65 Aligned_cols=53 Identities=25% Similarity=0.495 Sum_probs=38.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~ 71 (182)
|.+||++|--++.+|+|.+||+--..- .=.+--.|.||.||.+. |..--+..+
T Consensus 474 VLVATDVASKGLDFp~iqHVINyDMP~------------------eIENYVHRIGRTGRsg~~GiATTfINK 527 (610)
T KOG0341|consen 474 VLVATDVASKGLDFPDIQHVINYDMPE------------------EIENYVHRIGRTGRSGKTGIATTFINK 527 (610)
T ss_pred eEEEecchhccCCCccchhhccCCChH------------------HHHHHHHHhcccCCCCCcceeeeeecc
Confidence 689999999999999999999654422 22444568888888655 665555443
No 82
>KOG0352|consensus
Probab=92.56 E-value=0.14 Score=46.43 Aligned_cols=55 Identities=33% Similarity=0.570 Sum_probs=39.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeec-CHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMY-SEED 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~-t~~~ 73 (182)
||+|||----++.-|+|+|||- ||+..+ -|-=-|-.|||||-+.-.+-||| ++++
T Consensus 308 vI~AT~SFGMGVDKp~VRFViH--------W~~~qn----------~AgYYQESGRAGRDGk~SyCRLYYsR~D 363 (641)
T KOG0352|consen 308 VIAATVSFGMGVDKPDVRFVIH--------WSPSQN----------LAGYYQESGRAGRDGKRSYCRLYYSRQD 363 (641)
T ss_pred EEEEEeccccccCCcceeEEEe--------cCchhh----------hHHHHHhccccccCCCccceeeeecccc
Confidence 6899998888899999999993 333222 24446889999997665555665 4443
No 83
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=92.30 E-value=0.07 Score=51.06 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=34.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc---cceEEe
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA---EGFCYR 67 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~---~G~c~r 67 (182)
|||||-+.|.|+.|+ ...+| +....=.+..||+||.+|.+ .|..|-
T Consensus 497 IvVaTQVIEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v 545 (733)
T COG1203 497 IVVATQVIEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYV 545 (733)
T ss_pred EEEEeeEEEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeE
Confidence 689999999999984 34433 44555678999999999988 355543
No 84
>KOG0351|consensus
Probab=92.04 E-value=0.12 Score=50.69 Aligned_cols=58 Identities=31% Similarity=0.514 Sum_probs=44.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHHHh
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDFRR 76 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~~~ 76 (182)
||+||=.---+|.-|||++||-.|+.|-. ..==|=.|||||-+ +-.|.-+|+-.++..
T Consensus 538 VivATVAFGMGIdK~DVR~ViH~~lPks~------------------E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 538 VIVATVAFGMGIDKPDVRFVIHYSLPKSF------------------EGYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred EEEEEeeccCCCCCCceeEEEECCCchhH------------------HHHHHhccccCcCCCcceeEEecchhHHHH
Confidence 68999666778999999999999997722 22237788998854 477988888777644
No 85
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=91.47 E-value=0.16 Score=49.27 Aligned_cols=82 Identities=24% Similarity=0.315 Sum_probs=51.4
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc----cceEEeecCHHHHHh
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA----EGFCYRMYSEEDFRR 76 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~----~G~c~rL~t~~~~~~ 76 (182)
+|+||.=.|-+|.|.+|.-||--| .|-|=+...||.||+|..- .|..|...-.+..++
T Consensus 307 avV~TSSLELGIDiG~vdlVIq~~------------------SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~ 368 (814)
T COG1201 307 AVVATSSLELGIDIGDIDLVIQLG------------------SPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLEC 368 (814)
T ss_pred EEEEccchhhccccCCceEEEEeC------------------CcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHH
Confidence 489999999999999999999433 3556678999999999643 344444431111122
Q ss_pred -------c-cCCCCChhccCChHHHHHHHHhc
Q psy17746 77 -------M-NKNTVPEIQRTNLASTALTLLSL 100 (182)
Q Consensus 77 -------l-~~~~~PeI~r~~L~~~vL~lk~l 100 (182)
+ ..-..++|...+|.-+.=++.++
T Consensus 369 ~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~ 400 (814)
T COG1201 369 LVLADLALEGKLERIKIPKNPLDVLAQQIVGM 400 (814)
T ss_pred HHHHHHHHhCCcccCCCCCcchhHHHHHHHHH
Confidence 1 12224666666665544444433
No 86
>KOG0920|consensus
Probab=90.96 E-value=0.5 Score=46.39 Aligned_cols=67 Identities=22% Similarity=0.330 Sum_probs=48.0
Q ss_pred CcccccCcCCCcccc----ccceeEeeecccccCCC---CCceeeeeeeeeccc-cceeeeeeeChhhhhhhCcc
Q psy17746 103 NAATFDFMDKPPKEI----ESRQLVSIHPSSSLAGS---LPEYILFTELLQTSR-CYMKTLSVIDPAWITEMVPG 169 (182)
Q Consensus 103 ~~~~f~~~dpP~~~~----~~~~~v~iHPsS~l~~~---~p~~ivy~elv~t~~-~yir~vs~i~~~WL~e~~p~ 169 (182)
++.....++|.+.+. .....+.+||+|+.++. ..+|++|+|-+.+++ .|+|++|.+.+-=+...+..
T Consensus 772 ~i~~~~~~~~~~~~~~~~~~~~~~v~i~~~sv~~~~~~~~~p~l~~~~k~~t~~~~~~rd~T~v~~~~~llfgg~ 846 (924)
T KOG0920|consen 772 NIAFVRRMEPKSKSVTFVTKADGRVIIHPSSVNEQSTGFQSPFLVFPEKVKSTRLVSLRDTTSVSSSALLLFGGG 846 (924)
T ss_pred ceeeeecccCCcCcceeecCCceeEEEecchhhccccccCCcceEEeeecccCCcceeeecCCCCcHHheeecCC
Confidence 444334444444433 33458999999999854 234999999999999 99999999987777655543
No 87
>KOG0953|consensus
Probab=90.86 E-value=0.47 Score=44.25 Aligned_cols=62 Identities=24% Similarity=0.313 Sum_probs=42.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc----ceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE----GFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~----G~c~rL~t~~ 72 (182)
|.|||+..--++.+ +|+=||=+-+ ...+.-.+..++-+|+.|=+|||||.+. |..=.|+.++
T Consensus 412 vlVAsDAIGMGLNL-~IrRiiF~sl---------~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 412 VLVASDAIGMGLNL-NIRRIIFYSL---------IKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred eEEeeccccccccc-ceeEEEEeec---------ccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 56888877777765 5565552222 2223456788999999999999999764 5555666554
No 88
>KOG0347|consensus
Probab=90.59 E-value=0.33 Score=45.22 Aligned_cols=54 Identities=22% Similarity=0.514 Sum_probs=39.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEE-EeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVK-QKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEED 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k-~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~~ 73 (182)
|.|||++|--++.||+|.+||-=-..+ ...|- .|.||..|... |+..-|+...+
T Consensus 516 VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYV-------------------HRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 516 VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYV-------------------HRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred EEEeehhhhccCCCCCcceEEEeecCCccceeE-------------------ecccccccccCCCeEEEEeChHH
Confidence 679999999999999999999654443 22232 46667666444 88888877554
No 89
>KOG0350|consensus
Probab=88.89 E-value=0.35 Score=44.50 Aligned_cols=54 Identities=20% Similarity=0.463 Sum_probs=41.4
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~ 72 (182)
|.+|+++.--++.|.||+.||+ ||+ |.+-.+=..|+||.||.+. |.||-|.+..
T Consensus 486 vLIcSD~laRGiDv~~v~~VIN--------Yd~----------P~~~ktyVHR~GRTARAgq~G~a~tll~~~ 540 (620)
T KOG0350|consen 486 VLICSDALARGIDVNDVDNVIN--------YDP----------PASDKTYVHRAGRTARAGQDGYAITLLDKH 540 (620)
T ss_pred EEEehhhhhcCCcccccceEee--------cCC----------CchhhHHHHhhcccccccCCceEEEeeccc
Confidence 4689999999999999999994 443 2333445578888888655 9999998864
No 90
>KOG0343|consensus
Probab=88.81 E-value=0.48 Score=44.25 Aligned_cols=55 Identities=22% Similarity=0.399 Sum_probs=44.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEED 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~~ 73 (182)
|.+||+||-.++.+|-|..||. .-+|..-++=..|.||..|-.. |.|+-+.+..+
T Consensus 368 vLF~TDv~aRGLDFpaVdwViQ------------------~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 368 VLFCTDVAARGLDFPAVDWVIQ------------------VDCPEDVDTYIHRVGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred EEEeehhhhccCCCcccceEEE------------------ecCchhHHHHHHHhhhhhcccCCCceEEEEcchh
Confidence 5789999999999999999982 2245556667789999999655 99998887554
No 91
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=88.29 E-value=0.45 Score=47.81 Aligned_cols=61 Identities=23% Similarity=0.345 Sum_probs=44.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc--ce-EEeecCHH-HHHh
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE--GF-CYRMYSEE-DFRR 76 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~--G~-c~rL~t~~-~~~~ 76 (182)
|+++++++-|++.+|+|..|| +....-|+..-.|+.||+.|.++ |+ +|.+|.-- .|+.
T Consensus 759 IlVsvdmL~TG~DvP~v~~vV------------------f~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~vg~~~~ 820 (1123)
T PRK11448 759 IVVTVDLLTTGIDVPSICNLV------------------FLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAVDIYEA 820 (1123)
T ss_pred EEEEecccccCCCcccccEEE------------------EecCCCCHHHHHHHHhhhccCCccCCCceEEEEehHHHHHh
Confidence 468899999999999999888 11122467777999999999998 55 66676632 3344
Q ss_pred ccC
Q psy17746 77 MNK 79 (182)
Q Consensus 77 l~~ 79 (182)
+.+
T Consensus 821 l~~ 823 (1123)
T PRK11448 821 LES 823 (1123)
T ss_pred ccc
Confidence 433
No 92
>KOG0328|consensus
Probab=85.97 E-value=1.1 Score=38.72 Aligned_cols=57 Identities=25% Similarity=0.451 Sum_probs=43.9
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEEDFR 75 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~~~~ 75 (182)
|.++|++=-.++.++.|..||+--+ |..+..-..|.||+||-+. |+...+-..++-.
T Consensus 319 vLitTDVwaRGiDv~qVslviNYDL------------------P~nre~YIHRIGRSGRFGRkGvainFVk~~d~~ 376 (400)
T KOG0328|consen 319 VLITTDVWARGIDVQQVSLVINYDL------------------PNNRELYIHRIGRSGRFGRKGVAINFVKSDDLR 376 (400)
T ss_pred EEEEechhhccCCcceeEEEEecCC------------------CccHHHHhhhhccccccCCcceEEEEecHHHHH
Confidence 5789999999999999999996433 4455666778888888554 9988888776543
No 93
>KOG0326|consensus
Probab=85.59 E-value=1.2 Score=39.11 Aligned_cols=53 Identities=23% Similarity=0.427 Sum_probs=44.4
Q ss_pred EEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHH
Q psy17746 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEE 72 (182)
Q Consensus 2 ilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~ 72 (182)
.|||+..-.+|.|+.|-+||+.-+.|. -++-..|.||+||-+. |....|.|-+
T Consensus 376 LVctDL~TRGIDiqavNvVINFDfpk~------------------aEtYLHRIGRsGRFGhlGlAInLitye 429 (459)
T KOG0326|consen 376 LVCTDLFTRGIDIQAVNVVINFDFPKN------------------AETYLHRIGRSGRFGHLGLAINLITYE 429 (459)
T ss_pred eeehhhhhcccccceeeEEEecCCCCC------------------HHHHHHHccCCccCCCcceEEEEEehh
Confidence 589999999999999999999888663 3455689999999766 9999998854
No 94
>KOG0332|consensus
Probab=85.08 E-value=0.97 Score=40.37 Aligned_cols=59 Identities=20% Similarity=0.371 Sum_probs=43.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~ 71 (182)
|.++||+.-.+|.++.|..||+--+... |+.. -.-+.=..|.||+||-+. |..|.|...
T Consensus 383 VLitTnV~ARGiDv~qVs~VvNydlP~~--~~~~----------pD~etYlHRiGRtGRFGkkG~a~n~v~~ 442 (477)
T KOG0332|consen 383 VLITTNVCARGIDVAQVSVVVNYDLPVK--YTGE----------PDYETYLHRIGRTGRFGKKGLAINLVDD 442 (477)
T ss_pred EEEEechhhcccccceEEEEEecCCccc--cCCC----------CCHHHHHHHhcccccccccceEEEeecc
Confidence 5789999999999999999997665432 1111 223445678899998665 999987654
No 95
>KOG0349|consensus
Probab=78.54 E-value=1.8 Score=39.58 Aligned_cols=50 Identities=22% Similarity=0.516 Sum_probs=36.9
Q ss_pred EEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeec
Q psy17746 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMY 69 (182)
Q Consensus 2 ilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~ 69 (182)
.++|++|-.++.|-|+-|+|+.-+. =.|.+-..|.||+||... |....|-
T Consensus 562 lictdvaargldi~g~p~~invtlp------------------d~k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 562 LICTDVAARGLDITGLPFMINVTLP------------------DDKTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred EEEehhhhccccccCCceEEEEecC------------------cccchhhhhhhccchhhhcceeEEEe
Confidence 5899999999999999999975543 234445568888888544 6665554
No 96
>COG1204 Superfamily II helicase [General function prediction only]
Probab=77.91 E-value=3.1 Score=40.29 Aligned_cols=52 Identities=25% Similarity=0.466 Sum_probs=38.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA 61 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~ 61 (182)
|++||.=.-.++..|- +.||=.| ...||+..| .+.+++-.-.|..|||||-+
T Consensus 343 Vlv~TpTLA~GVNLPA-~~VIIk~---~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg 394 (766)
T COG1204 343 VLVSTPTLAAGVNLPA-RTVIIKD---TRRYDPKGG-----IVDIPVLDVLQMAGRAGRPG 394 (766)
T ss_pred EEEechHHhhhcCCcc-eEEEEee---eEEEcCCCC-----eEECchhhHhhccCcCCCCC
Confidence 5788887777788887 4444233 345777333 57899999999999999943
No 97
>PRK14701 reverse gyrase; Provisional
Probab=77.28 E-value=1 Score=46.97 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=44.4
Q ss_pred CEEEe----cccccCCCCCC-ceEEEeCCeEEEeE----EeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecC
Q psy17746 1 IILAT----NIAETSITVPG-IKYVIDSGLVKQKT----HHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYS 70 (182)
Q Consensus 1 vilaT----niaEtsiti~~-v~~VID~G~~k~~~----~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t 70 (182)
|+||| ++|--+|.+|+ |+|||.-|..|..+ |...... .+. ...+.++.|||||.+ ++.|+-.|.
T Consensus 381 VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~-~~~-----~~~~~~~~~~a~~~g~~~~~~~~~~ 454 (1638)
T PRK14701 381 YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR-ILG-----LLSEILKIEEELKEGIPIEGVLDVF 454 (1638)
T ss_pred EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh-hhc-----chHHHHHhhhhcccCCcchhHHHhH
Confidence 57999 69999999999 99999999988332 2222211 011 344667788888865 455654444
Q ss_pred HHHH
Q psy17746 71 EEDF 74 (182)
Q Consensus 71 ~~~~ 74 (182)
.+..
T Consensus 455 ~~~~ 458 (1638)
T PRK14701 455 PEDV 458 (1638)
T ss_pred HHHH
Confidence 4433
No 98
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=73.45 E-value=2.4 Score=42.43 Aligned_cols=44 Identities=23% Similarity=0.169 Sum_probs=32.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceE
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFC 65 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c 65 (182)
|||||.+.|.|+.|+= .. +...+.+-.+..||+||.-|.+.+..
T Consensus 841 i~v~Tqv~E~g~D~df-d~--------------------~~~~~~~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 841 IVLATPVEEVGRDHDY-DW--------------------AIADPSSMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred EEEEeeeEEEEecccC-Ce--------------------eeeccCcHHHHHHHhhcccccccCCC
Confidence 6899999999987732 22 22345566788999999998876554
No 99
>KOG0391|consensus
Probab=70.71 E-value=5.5 Score=40.68 Aligned_cols=58 Identities=28% Similarity=0.346 Sum_probs=48.7
Q ss_pred EEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHH
Q psy17746 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDF 74 (182)
Q Consensus 2 ilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~ 74 (182)
||||--.-++|.+-|.+-|| +||...+ |.=-++|+-|..|.|+++.=+.|||.++..-
T Consensus 1332 ILSTrSggvGiNLtgADTVv--------FYDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TI 1389 (1958)
T KOG0391|consen 1332 ILSTRSGGVGINLTGADTVV--------FYDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTI 1389 (1958)
T ss_pred EEeccCCccccccccCceEE--------EecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchH
Confidence 78888888888888887777 7887776 5557899999999999999999999997644
No 100
>KOG0353|consensus
Probab=70.23 E-value=3.6 Score=37.05 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.4
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEE
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVK 27 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k 27 (182)
|||||-.--.+|.-|||+|||.-.+.|
T Consensus 370 vivatvafgmgidkpdvrfvihhsl~k 396 (695)
T KOG0353|consen 370 VIVATVAFGMGIDKPDVRFVIHHSLPK 396 (695)
T ss_pred EEEEEeeecccCCCCCeeEEEecccch
Confidence 689998778889999999999887766
No 101
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=68.64 E-value=4.2 Score=39.28 Aligned_cols=52 Identities=27% Similarity=0.363 Sum_probs=32.9
Q ss_pred CEEEecccccCCCC--C--------Cce-----EEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ce
Q psy17746 1 IILATNIAETSITV--P--------GIK-----YVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GF 64 (182)
Q Consensus 1 vilaTniaEtsiti--~--------~v~-----~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~ 64 (182)
|.+|||+|--+..| . +|+ +||=+. ..-|+---.|=+||+||.+. |.
T Consensus 478 VTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTe------------------rheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 478 VTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTG------------------RHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred EEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEecc------------------CCchHHHHHHHhcccccCCCCCc
Confidence 67999999988444 2 222 444332 23455556789999999765 87
Q ss_pred EEeecC
Q psy17746 65 CYRMYS 70 (182)
Q Consensus 65 c~rL~t 70 (182)
+--..+
T Consensus 540 s~f~lS 545 (764)
T PRK12326 540 SVFFVS 545 (764)
T ss_pred eeEEEE
Confidence 544444
No 102
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=67.94 E-value=5.4 Score=39.26 Aligned_cols=47 Identities=30% Similarity=0.443 Sum_probs=29.7
Q ss_pred CEEEecccccCCCCC---Cce-----EEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceE
Q psy17746 1 IILATNIAETSITVP---GIK-----YVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFC 65 (182)
Q Consensus 1 vilaTniaEtsiti~---~v~-----~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c 65 (182)
|.+|||+|--+..|. +|. |||-+.+ .-|+-=-.|-+||+||.+. |.+
T Consensus 477 VTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTer------------------heSrRIDnQLrGRaGRQGDpGss 532 (925)
T PRK12903 477 ITIATNMAGRGTDIKLSKEVLELGGLYVLGTDK------------------AESRRIDNQLRGRSGRQGDVGES 532 (925)
T ss_pred EEEecccccCCcCccCchhHHHcCCcEEEeccc------------------CchHHHHHHHhcccccCCCCCcc
Confidence 579999999885542 122 5553332 2233334599999999765 864
No 103
>KOG3360|consensus
Probab=66.57 E-value=1.9 Score=31.08 Aligned_cols=18 Identities=28% Similarity=0.791 Sum_probs=13.8
Q ss_pred CccccceEEeecCHHHHHh
Q psy17746 58 GREAEGFCYRMYSEEDFRR 76 (182)
Q Consensus 58 Gr~~~G~c~rL~t~~~~~~ 76 (182)
||+ +|.|||.+|.+.-..
T Consensus 16 GRV-QGv~fr~~t~~~a~~ 33 (98)
T KOG3360|consen 16 GRV-QGVCFRKHTLDEAKK 33 (98)
T ss_pred eee-ccchhhHHHHHHHHh
Confidence 555 599999999876543
No 104
>KOG0385|consensus
Probab=66.27 E-value=8.6 Score=37.48 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=40.3
Q ss_pred EEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHH
Q psy17746 3 LATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDF 74 (182)
Q Consensus 3 laTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~ 74 (182)
|+|-.+--+|.+-..+.|| .||...+ |-.--||++|+.|.|-..+=+.|||.|+..-
T Consensus 545 LSTRAGGLGINL~aADtVI--------lyDSDWN-------PQ~DLQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 545 LSTRAGGLGINLTAADTVI--------LYDSDWN-------PQVDLQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred EeccccccccccccccEEE--------EecCCCC-------chhhhHHHHHHHhhCCcCceEEEEEeccchH
Confidence 5666666666655555554 3444433 4445699999999999999999999997654
No 105
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=65.27 E-value=6 Score=39.23 Aligned_cols=52 Identities=27% Similarity=0.328 Sum_probs=32.6
Q ss_pred CEEEecccccCCCC--C-Cce-----EEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecC
Q psy17746 1 IILATNIAETSITV--P-GIK-----YVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti--~-~v~-----~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t 70 (182)
|.+|||+|--+..| . +|. +||=+. ..-|+---.|=+||+||.+. |.+--..+
T Consensus 619 VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTe------------------r~es~Rid~Ql~GRagRQGdpGss~f~lS 679 (970)
T PRK12899 619 VTVATNMAGRGTDIKLDEEAVAVGGLYVIGTS------------------RHQSRRIDRQLRGRCARLGDPGAAKFFLS 679 (970)
T ss_pred EEEeeccccCCcccccCchHHhcCCcEEEeec------------------cCchHHHHHHHhcccccCCCCCceeEEEE
Confidence 67999999888443 2 121 333222 23455566799999999765 87544444
No 106
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=64.52 E-value=4.9 Score=39.64 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=16.6
Q ss_pred EeeHHHHHhhcCcCCcccc-ceEEe
Q psy17746 44 SISQAQAWQRTGRAGREAE-GFCYR 67 (182)
Q Consensus 44 ~isk~~a~qR~graGr~~~-G~c~r 67 (182)
.-|+-=-.|=+||+||.+. |.+--
T Consensus 562 heSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 562 HESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred CchHHHHHHhccccccCCCCCceEE
Confidence 3444456789999999765 87543
No 107
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=62.80 E-value=7.5 Score=38.98 Aligned_cols=58 Identities=22% Similarity=0.255 Sum_probs=43.5
Q ss_pred EEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHH
Q psy17746 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDF 74 (182)
Q Consensus 2 ilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~ 74 (182)
+|||..+-.+|++.....|| .||+..+ |..-.||.-|+.|.|...+=..|||.++...
T Consensus 544 LLSTrAGGlGINLt~Ad~VI--------iyD~dWN-------P~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 544 LLSTRAGGLGINLATADIVI--------LYDSDWN-------PQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred EEeccccccCCchhhCCEEE--------EeCCCCC-------hHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 68999999999998888887 3555543 3344567777777777777779999997654
No 108
>KOG4284|consensus
Probab=62.19 E-value=9.3 Score=36.77 Aligned_cols=54 Identities=22% Similarity=0.460 Sum_probs=39.9
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~ 72 (182)
|.|||++---+|.-|+|-.||+--. |..-..=..|.|||||-+. |...-+.-.+
T Consensus 325 ILVsTDLtaRGIDa~~vNLVVNiD~------------------p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 325 ILVSTDLTARGIDADNVNLVVNIDA------------------PADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred EEEecchhhccCCccccceEEecCC------------------CcchHHHHHHhhhcccccccceeEEEeccc
Confidence 5789999888899999988885432 3344455689999999777 8877666543
No 109
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=57.78 E-value=7.5 Score=39.51 Aligned_cols=30 Identities=17% Similarity=0.403 Sum_probs=26.2
Q ss_pred CEEE----ecccccCCCCCC-ceEEEeCCeEEEeE
Q psy17746 1 IILA----TNIAETSITVPG-IKYVIDSGLVKQKT 30 (182)
Q Consensus 1 vila----TniaEtsiti~~-v~~VID~G~~k~~~ 30 (182)
|+|| ||+|.-+|.||+ |+|||..|..+...
T Consensus 378 vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 378 VLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred EEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 5678 599999999999 89999999988654
No 110
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=56.06 E-value=12 Score=37.67 Aligned_cols=47 Identities=30% Similarity=0.442 Sum_probs=30.8
Q ss_pred CEEEecccccCCCCC---Cce-----EEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceE
Q psy17746 1 IILATNIAETSITVP---GIK-----YVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFC 65 (182)
Q Consensus 1 vilaTniaEtsiti~---~v~-----~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c 65 (182)
|.+|||+|--+-.|. +|+ +||=+. ..-|+---.|=+||+||.+. |.+
T Consensus 679 VTIATNMAGRGTDIkLg~~V~e~GGL~VIgTe------------------rheSrRID~QLrGRaGRQGDPGsS 734 (1112)
T PRK12901 679 VTIATNMAGRGTDIKLSPEVKAAGGLAIIGTE------------------RHESRRVDRQLRGRAGRQGDPGSS 734 (1112)
T ss_pred EEEeccCcCCCcCcccchhhHHcCCCEEEEcc------------------CCCcHHHHHHHhcccccCCCCCcc
Confidence 579999999885553 222 444222 23455556799999999765 864
No 111
>KOG0327|consensus
Probab=54.52 E-value=18 Score=32.37 Aligned_cols=57 Identities=26% Similarity=0.476 Sum_probs=40.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc-ccceEEeecCHHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE-AEGFCYRMYSEEDFR 75 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~-~~G~c~rL~t~~~~~ 75 (182)
|.+.|+.+--++.|-++..||+- | .|.-|.+=..|+||+||- ++|....+.+++.-.
T Consensus 316 vlIttdl~argidv~~~slviny--------d----------lP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~ 373 (397)
T KOG0327|consen 316 VLITTDLLARGIDVQQVSLVVNY--------D----------LPARKENYIHRIGRAGRFGRKGVAINFVTEEDVR 373 (397)
T ss_pred EEeeccccccccchhhcceeeee--------c----------cccchhhhhhhcccccccCCCceeeeeehHhhHH
Confidence 45777777777777777777632 2 244566677899999995 459999988876543
No 112
>KOG0337|consensus
Probab=53.09 E-value=8.3 Score=35.12 Aligned_cols=52 Identities=29% Similarity=0.524 Sum_probs=35.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCe-EEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGL-VKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~-~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t 70 (182)
+.+.|++|--++.||...-||+--+ .+.+.|-.+.| |..||||+ |..|-+-+
T Consensus 314 ~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVg----------------r~aragrt--g~aYs~V~ 366 (529)
T KOG0337|consen 314 ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVG----------------RVARAGRT--GRAYSLVA 366 (529)
T ss_pred eEEEehhhhccCCCccccccccccCCCCCceEEEEec----------------chhhcccc--ceEEEEEe
Confidence 3678999999999999999997666 33444444433 45555554 66666554
No 113
>PRK09401 reverse gyrase; Reviewed
Probab=52.29 E-value=11 Score=38.36 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=25.7
Q ss_pred CEEE----ecccccCCCCCC-ceEEEeCCeEEEe
Q psy17746 1 IILA----TNIAETSITVPG-IKYVIDSGLVKQK 29 (182)
Q Consensus 1 vila----TniaEtsiti~~-v~~VID~G~~k~~ 29 (182)
|+|| ||+|.-+|.||+ |+|||..|..+..
T Consensus 379 VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~ 412 (1176)
T PRK09401 379 VLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFK 412 (1176)
T ss_pred EEEEecCCCCceeecCCCCcceeEEEEeCCCCEE
Confidence 5678 699999999999 8999999999843
No 114
>KOG0951|consensus
Probab=49.99 E-value=12 Score=38.44 Aligned_cols=66 Identities=26% Similarity=0.383 Sum_probs=44.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-----ceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-----GFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-----G~c~rL~t~~~~ 74 (182)
|.++|.-.+=++.+|.=+.+| -| ..+|||..|. -..+|.-...|+.|||||.+- |+..-=+++-.|
T Consensus 636 vlvstatlawgvnlpahtVii-kg---tqvy~pekg~----w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qy 706 (1674)
T KOG0951|consen 636 VLVSTATLAWGVNLPAHTVII-KG---TQVYDPEKGR----WTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQY 706 (1674)
T ss_pred EEEeehhhhhhcCCCcceEEe-cC---ccccCcccCc----cccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhh
Confidence 456777777778888744444 23 5689999774 346788899999999999653 444444444444
No 115
>KOG0950|consensus
Probab=47.45 E-value=14 Score=36.65 Aligned_cols=59 Identities=20% Similarity=0.327 Sum_probs=41.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc---cceEEeecCHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA---EGFCYRMYSEED 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~---~G~c~rL~t~~~ 73 (182)
|++||+-.-+++..|-.+++|-.-+.- ....++.+=.|+.|||||.+ -|.++-.+.+.+
T Consensus 551 vl~aTSTlaaGVNLPArRVIiraP~~g--------------~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 551 VLVATSTLAAGVNLPARRVIIRAPYVG--------------REFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred EEEecchhhccCcCCcceeEEeCCccc--------------cchhhhhhHHhhhhhhhhcccccCcceEEEeeccc
Confidence 467777777778888877777433322 23567788899999999974 387888877654
No 116
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=47.32 E-value=16 Score=32.97 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=34.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccce
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGF 64 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~ 64 (182)
+++++-|+..++.+|++..+| +....-|+..-.||.||.=|..+|+
T Consensus 335 ~lv~~~vl~EGvDiP~~~~~i------------------~~~~t~S~~~~~Q~lGR~LR~~~~k 380 (442)
T COG1061 335 VLVTVKVLDEGVDIPDADVLI------------------ILRPTGSRRLFIQRLGRGLRPAEGK 380 (442)
T ss_pred EEEEeeeccceecCCCCcEEE------------------EeCCCCcHHHHHHHhhhhccCCCCC
Confidence 467778888899999988777 1122457888899999999955543
No 117
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=45.88 E-value=21 Score=35.01 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=18.7
Q ss_pred EeeHHHHHhhcCcCCcccc-ceEEeecC
Q psy17746 44 SISQAQAWQRTGRAGREAE-GFCYRMYS 70 (182)
Q Consensus 44 ~isk~~a~qR~graGr~~~-G~c~rL~t 70 (182)
.-|+-=-.|=+||+||.+. |.+--..+
T Consensus 544 hesrRid~QlrGRagRQGdpGss~f~lS 571 (830)
T PRK12904 544 HESRRIDNQLRGRSGRQGDPGSSRFYLS 571 (830)
T ss_pred CchHHHHHHhhcccccCCCCCceeEEEE
Confidence 4555556799999999765 87544444
No 118
>KOG0948|consensus
Probab=45.27 E-value=13 Score=36.37 Aligned_cols=52 Identities=27% Similarity=0.392 Sum_probs=36.3
Q ss_pred CCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc---ceEEeecCHH
Q psy17746 11 SITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE---GFCYRMYSEE 72 (182)
Q Consensus 11 siti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~---G~c~rL~t~~ 72 (182)
++.+|- +-|| |.....|| .-...|||-.+=.|..|||||.+- |+|.-+..+.
T Consensus 485 GLNMPA-kTVv---FT~~rKfD------G~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 485 GLNMPA-KTVV---FTAVRKFD------GKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ccCCcc-eeEE---EeeccccC------CcceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 466665 3343 23333344 445689999999999999999653 9999988764
No 119
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=43.18 E-value=18 Score=34.47 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=22.8
Q ss_pred EEEeeHHHHHhhcCcCCc---cccceEEeec
Q psy17746 42 VTSISQAQAWQRTGRAGR---EAEGFCYRMY 69 (182)
Q Consensus 42 ~~~isk~~a~qR~graGr---~~~G~c~rL~ 69 (182)
..|+|-.+-+|..||||| +..|+.|-|-
T Consensus 520 ~~WLs~~EF~QM~GRAGRp~yHdrGkVyllv 550 (830)
T COG1202 520 IEWLSVREFQQMLGRAGRPDYHDRGKVYLLV 550 (830)
T ss_pred cccCCHHHHHHHhcccCCCCcccCceEEEEe
Confidence 479999999999999999 4457777653
No 120
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=41.88 E-value=29 Score=34.41 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=16.6
Q ss_pred EeeHHHHHhhcCcCCcccc-ceEEe
Q psy17746 44 SISQAQAWQRTGRAGREAE-GFCYR 67 (182)
Q Consensus 44 ~isk~~a~qR~graGr~~~-G~c~r 67 (182)
.-|+-=-.|=+|||||.+. |.+--
T Consensus 558 hesrRID~QLrGRaGRQGDPGss~f 582 (896)
T PRK13104 558 HESRRIDNQLRGRAGRQGDPGSSRF 582 (896)
T ss_pred CchHHHHHHhccccccCCCCCceEE
Confidence 3445556789999999765 87443
No 121
>KOG0334|consensus
Probab=41.02 E-value=12 Score=37.30 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=36.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~ 71 (182)
+.+||++|-.++.+.++-.||+--+.. .+ +.--.|.||+||+++ |.||-+-+.
T Consensus 666 LLvaTsvvarGLdv~~l~Lvvnyd~pn--------h~----------edyvhR~gRTgragrkg~AvtFi~p 719 (997)
T KOG0334|consen 666 LLVATSVVARGLDVKELILVVNYDFPN--------HY----------EDYVHRVGRTGRAGRKGAAVTFITP 719 (997)
T ss_pred EEEehhhhhcccccccceEEEEcccch--------hH----------HHHHHHhcccccCCccceeEEEeCh
Confidence 468999999999999999987544432 21 124466777776665 777666665
No 122
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=39.72 E-value=28 Score=34.57 Aligned_cols=26 Identities=35% Similarity=0.331 Sum_probs=16.9
Q ss_pred eeHHHHHhhcCcCCcccc-ceEEeecC
Q psy17746 45 ISQAQAWQRTGRAGREAE-GFCYRMYS 70 (182)
Q Consensus 45 isk~~a~qR~graGr~~~-G~c~rL~t 70 (182)
-|+-=-.|=+|||||.+. |.+--..+
T Consensus 563 eSrRID~QLrGRaGRQGDPGss~f~lS 589 (908)
T PRK13107 563 ESRRIDNQLRGRAGRQGDAGSSRFYLS 589 (908)
T ss_pred chHHHHhhhhcccccCCCCCceeEEEE
Confidence 344445688999999765 87543333
No 123
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=38.57 E-value=21 Score=34.57 Aligned_cols=61 Identities=25% Similarity=0.345 Sum_probs=34.3
Q ss_pred CEEEecccccCCCCCCceEEE----eCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc-ccceE-EeecCH
Q psy17746 1 IILATNIAETSITVPGIKYVI----DSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE-AEGFC-YRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VI----D~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~-~~G~c-~rL~t~ 71 (182)
|++-|-+.-=+..+|+|+-|. |+|+-... .+.. -=.-.-..|=+|||||. .+|.. ..-|..
T Consensus 537 ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~D---fRA~-------Er~fqll~QvaGRAgR~~~~G~VvIQT~~P 603 (730)
T COG1198 537 ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPD---FRAS-------ERTFQLLMQVAGRAGRAGKPGEVVIQTYNP 603 (730)
T ss_pred eeecchhhhcCCCcccceEEEEEechhhhcCCC---cchH-------HHHHHHHHHHHhhhccCCCCCeEEEEeCCC
Confidence 345566555567788888664 56653322 1111 00112367889999997 66764 344443
No 124
>KOG0947|consensus
Probab=35.17 E-value=29 Score=34.86 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=36.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc---ceEEeecC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE---GFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~---G~c~rL~t 70 (182)
|++||----.++.+|-=..|+|+=... |. -...-+.-.+-.|.+|||||.+= |...-+..
T Consensus 659 VLFATETFAMGVNMPARtvVF~Sl~Kh----DG------~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 659 VLFATETFAMGVNMPARTVVFSSLRKH----DG------NEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCK 721 (1248)
T ss_pred EEeehhhhhhhcCCCceeEEeeehhhc----cC------cceeecCChhHHhhhccccccccCcCceEEEEec
Confidence 467776555678898866666553322 11 12234455677799999999653 66555544
No 125
>PF11943 DUF3460: Protein of unknown function (DUF3460); InterPro: IPR021853 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 70 amino acids in length. This protein has a conserved WDK sequence motif.
Probab=32.76 E-value=16 Score=24.03 Aligned_cols=9 Identities=56% Similarity=0.708 Sum_probs=7.8
Q ss_pred HHHhhcCcC
Q psy17746 49 QAWQRTGRA 57 (182)
Q Consensus 49 ~a~qR~gra 57 (182)
.++||+|||
T Consensus 22 e~~Q~~GRa 30 (60)
T PF11943_consen 22 EEEQRAGRA 30 (60)
T ss_pred HHHHHHhhH
Confidence 588999998
No 126
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=32.59 E-value=34 Score=34.44 Aligned_cols=58 Identities=26% Similarity=0.302 Sum_probs=42.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc---ceEEee
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE---GFCYRM 68 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~---G~c~rL 68 (182)
|++||-.---++.+|- +-||=++++|-. .-...|++..+-.|-.|||||.+= |...-.
T Consensus 473 vvFaTeT~s~GiNmPa-rtvv~~~l~K~d---------G~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 473 VVFATETFAIGINMPA-RTVVFTSLSKFD---------GNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred EEeehhhhhhhcCCcc-cceeeeeeEEec---------CCceeecChhHHHHhhhhhccccccccceEEEe
Confidence 5778877767788875 666667776643 234578999999999999998643 766655
No 127
>KOG0388|consensus
Probab=31.38 E-value=66 Score=31.65 Aligned_cols=57 Identities=21% Similarity=0.270 Sum_probs=40.5
Q ss_pred EEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHH
Q psy17746 3 LATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDF 74 (182)
Q Consensus 3 laTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~ 74 (182)
|+|-..--+|.+--.+-|| +||...+ |..-.||.-|+.|.|.++.=..|||.++..-
T Consensus 1100 LSTRAGGLGINLTAADTVi--------FYdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1100 LSTRAGGLGINLTAADTVI--------FYDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred EecccCcccccccccceEE--------EecCCCC-------cchhhHHHHHHHhccCccceeeeeecccccH
Confidence 4555555555544444444 5666654 4556789999999999999999999998755
No 128
>KOG0389|consensus
Probab=30.73 E-value=57 Score=32.12 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=24.2
Q ss_pred HHHHhhcCcCCccccceEEeecCHHHH
Q psy17746 48 AQAWQRTGRAGREAEGFCYRMYSEEDF 74 (182)
Q Consensus 48 ~~a~qR~graGr~~~G~c~rL~t~~~~ 74 (182)
-||+-|+.|.|-++|=..|||.|+..-
T Consensus 864 ~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 864 KQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred chhHHHHHhhCCcceeEEEEEEecCcH
Confidence 489999999999999999999998643
No 129
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.30 E-value=57 Score=24.54 Aligned_cols=28 Identities=32% Similarity=0.701 Sum_probs=20.7
Q ss_pred EEEecccccCCCCCCceEEEeCCeEEEeEEeCCCC
Q psy17746 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTG 36 (182)
Q Consensus 2 ilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~ 36 (182)
++||+|-|.-.. .|+++|+| ..+||...
T Consensus 39 v~atDI~~~~a~-~g~~~v~D------DitnP~~~ 66 (129)
T COG1255 39 VLATDINEKTAP-EGLRFVVD------DITNPNIS 66 (129)
T ss_pred EEEEecccccCc-ccceEEEc------cCCCccHH
Confidence 789999998655 78888886 44566544
No 130
>KOG0384|consensus
Probab=23.55 E-value=1.1e+02 Score=31.73 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=49.0
Q ss_pred EEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHHH-hccCC
Q psy17746 2 ILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDFR-RMNKN 80 (182)
Q Consensus 2 ilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~~-~l~~~ 80 (182)
.|||=..--+|.+-..+-|| .||...+ |-.=-||+-|+.|.|-...=..|||.|+..|+ +|-+-
T Consensus 756 LLSTRAGGLGINLatADTVI--------IFDSDWN-------PQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilER 820 (1373)
T KOG0384|consen 756 LLSTRAGGLGINLATADTVI--------IFDSDWN-------PQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILER 820 (1373)
T ss_pred EEecccCcccccccccceEE--------EeCCCCC-------cchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHH
Confidence 35665555555554444444 2443333 33345788899999999888899999998884 33221
Q ss_pred CCChhccCChHHHHHHHHh
Q psy17746 81 TVPEIQRTNLASTALTLLS 99 (182)
Q Consensus 81 ~~PeI~r~~L~~~vL~lk~ 99 (182)
.=+..-|..+|++...
T Consensus 821 ---Ak~KmvLD~aVIQ~m~ 836 (1373)
T KOG0384|consen 821 ---AKLKMVLDHAVIQRMD 836 (1373)
T ss_pred ---HHHHhhhHHHHHHhhc
Confidence 1134456677776544
No 131
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=20.01 E-value=2.8e+02 Score=18.38 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=20.8
Q ss_pred EE-eCCeEEEeEEeCCCCceeeeEEEe
Q psy17746 20 VI-DSGLVKQKTHHPGTGLDVLQVTSI 45 (182)
Q Consensus 20 VI-D~G~~k~~~~~~~~~~~~l~~~~i 45 (182)
|+ +.|..|.-.||+.++=-.|...+.
T Consensus 34 v~~e~~~iKIfkyd~~tNei~L~KE~~ 60 (63)
T PF14157_consen 34 VVDEDGQIKIFKYDEDTNEITLKKEFY 60 (63)
T ss_dssp EE-ETTEEEEEEEETTTTEEEEEEEEE
T ss_pred EEecCCeEEEEEeCCCCCeEEEEEeee
Confidence 45 999999999999998666665543
Done!