Query psy17746
Match_columns 182
No_of_seqs 178 out of 1476
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 21:52:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 9.4E-41 3.2E-45 313.2 17.5 117 1-117 372-490 (773)
2 3i4u_A ATP-dependent RNA helic 99.6 1.5E-16 5.2E-21 132.8 5.6 60 118-177 194-253 (270)
3 3eaq_A Heat resistant RNA depe 99.5 5.4E-16 1.9E-20 124.0 0.8 98 1-116 84-202 (212)
4 2va8_A SSO2462, SKI2-type heli 99.5 2.1E-15 7.2E-20 139.2 4.1 94 1-101 341-447 (715)
5 3rc3_A ATP-dependent RNA helic 99.5 2.3E-15 7.8E-20 139.5 2.6 96 1-101 375-476 (677)
6 3i32_A Heat resistant RNA depe 99.5 1.4E-15 4.8E-20 128.4 -0.9 99 1-117 81-200 (300)
7 2p6r_A Afuhel308 helicase; pro 99.5 5.5E-14 1.9E-18 129.7 6.3 91 1-102 325-427 (702)
8 2z83_A Helicase/nucleoside tri 99.4 1.1E-13 3.9E-18 122.2 4.6 70 1-72 239-313 (459)
9 3o8b_A HCV NS3 protease/helica 99.3 1.6E-12 5.5E-17 120.2 4.5 71 1-74 442-516 (666)
10 2jlq_A Serine protease subunit 99.3 1.1E-11 3.9E-16 109.1 8.5 68 1-70 237-309 (451)
11 2zj8_A DNA helicase, putative 99.2 6.6E-12 2.3E-16 116.1 6.8 92 1-102 323-426 (720)
12 1yks_A Genome polyprotein [con 99.2 2.5E-11 8.7E-16 106.7 7.6 69 1-70 226-297 (440)
13 2whx_A Serine protease/ntpase/ 99.2 5.4E-11 1.9E-15 109.1 7.9 69 1-70 404-476 (618)
14 2v6i_A RNA helicase; membrane, 99.1 2.4E-10 8.2E-15 100.1 7.3 68 1-70 220-288 (431)
15 2wv9_A Flavivirin protease NS2 99.0 2.5E-10 8.5E-15 105.7 5.5 69 1-70 459-531 (673)
16 2ykg_A Probable ATP-dependent 99.0 6.9E-11 2.3E-15 108.0 0.5 81 1-100 464-554 (696)
17 3eiq_A Eukaryotic initiation f 98.8 2E-09 6.7E-14 91.6 3.1 57 1-75 333-390 (414)
18 1hv8_A Putative ATP-dependent 98.7 4.7E-09 1.6E-13 87.4 3.4 57 1-75 291-348 (367)
19 1s2m_A Putative ATP-dependent 98.7 1.1E-08 3.7E-13 86.9 5.1 57 1-75 311-368 (400)
20 1fuk_A Eukaryotic initiation f 98.7 1.1E-08 3.8E-13 77.8 3.9 56 1-74 83-139 (165)
21 2i4i_A ATP-dependent RNA helic 98.6 1.3E-08 4.5E-13 86.6 3.8 56 1-74 329-385 (417)
22 2rb4_A ATP-dependent RNA helic 98.6 4.2E-08 1.4E-12 75.3 5.0 61 1-73 87-148 (175)
23 2hjv_A ATP-dependent RNA helic 98.6 4.6E-08 1.6E-12 74.3 5.1 56 1-74 88-144 (163)
24 3fht_A ATP-dependent RNA helic 98.6 2.9E-08 1E-12 84.0 4.0 61 1-73 319-380 (412)
25 2j0s_A ATP-dependent RNA helic 98.6 3.9E-08 1.3E-12 83.8 4.6 56 1-74 329-385 (410)
26 4a4z_A Antiviral helicase SKI2 98.5 3.8E-08 1.3E-12 94.6 4.5 60 1-70 428-490 (997)
27 2jgn_A DBX, DDX3, ATP-dependen 98.5 5.5E-08 1.9E-12 75.8 4.6 56 1-74 99-155 (185)
28 3pey_A ATP-dependent RNA helic 98.5 3.3E-08 1.1E-12 82.9 3.5 60 1-72 296-356 (395)
29 1wp9_A ATP-dependent RNA helic 98.5 4.3E-08 1.5E-12 83.6 3.5 56 1-74 422-477 (494)
30 1fuu_A Yeast initiation factor 98.5 1.3E-08 4.6E-13 85.7 0.0 58 1-76 312-370 (394)
31 2xgj_A ATP-dependent RNA helic 98.5 1.8E-07 6.1E-12 90.1 7.7 88 1-99 435-532 (1010)
32 3l9o_A ATP-dependent RNA helic 98.5 6.4E-08 2.2E-12 94.0 4.5 62 1-72 533-597 (1108)
33 4a2p_A RIG-I, retinoic acid in 98.5 3.1E-08 1.1E-12 87.2 1.9 55 1-74 456-510 (556)
34 2v1x_A ATP-dependent DNA helic 98.5 1.2E-07 4E-12 86.5 5.2 57 1-75 320-377 (591)
35 1xti_A Probable ATP-dependent 98.4 1.4E-07 4.9E-12 79.3 5.1 55 1-73 303-358 (391)
36 1oyw_A RECQ helicase, ATP-depe 98.4 1.6E-07 5.5E-12 84.2 5.4 56 1-74 289-345 (523)
37 2z0m_A 337AA long hypothetical 98.4 1E-07 3.6E-12 78.4 3.4 54 1-72 269-323 (337)
38 3tbk_A RIG-I helicase domain; 98.4 3.4E-08 1.2E-12 86.7 -0.0 77 1-96 455-541 (555)
39 2yjt_D ATP-dependent RNA helic 97.8 3.6E-08 1.2E-12 75.4 0.0 56 1-74 83-139 (170)
40 2p6n_A ATP-dependent RNA helic 98.4 1.9E-07 6.7E-12 73.1 3.5 54 1-72 107-161 (191)
41 2db3_A ATP-dependent RNA helic 98.3 2.6E-07 8.9E-12 80.5 4.2 53 1-71 353-406 (434)
42 3i5x_A ATP-dependent RNA helic 98.3 2.6E-07 9E-12 82.3 3.7 56 1-74 395-451 (563)
43 3fmp_B ATP-dependent RNA helic 98.3 9.5E-08 3.3E-12 83.6 0.0 61 1-73 386-447 (479)
44 4a2q_A RIG-I, retinoic acid in 98.3 2.2E-07 7.6E-12 86.8 2.2 55 1-74 697-751 (797)
45 3sqw_A ATP-dependent RNA helic 98.3 4.4E-07 1.5E-11 81.6 3.7 56 1-74 344-400 (579)
46 1t5i_A C_terminal domain of A 98.2 4.2E-07 1.4E-11 69.7 2.6 54 1-72 84-138 (172)
47 3oiy_A Reverse gyrase helicase 98.2 6.8E-07 2.3E-11 76.5 3.8 57 1-73 300-366 (414)
48 3fho_A ATP-dependent RNA helic 98.2 5.1E-07 1.8E-11 80.2 2.8 59 1-71 410-469 (508)
49 1c4o_A DNA nucleotide excision 98.1 1.1E-06 3.8E-11 81.1 2.5 59 1-72 492-550 (664)
50 4a2w_A RIG-I, retinoic acid in 98.1 9.4E-07 3.2E-11 84.3 1.8 54 1-73 697-750 (936)
51 2d7d_A Uvrabc system protein B 98.0 1.3E-06 4.5E-11 80.5 2.1 59 1-72 498-556 (661)
52 4gl2_A Interferon-induced heli 98.0 9.2E-07 3.2E-11 80.6 1.1 80 1-100 467-558 (699)
53 1gm5_A RECG; helicase, replica 98.0 2E-06 6.7E-11 80.9 1.7 53 1-70 642-695 (780)
54 2eyq_A TRCF, transcription-rep 97.8 1.3E-05 4.4E-10 78.2 4.0 55 1-72 867-922 (1151)
55 1gku_B Reverse gyrase, TOP-RG; 97.7 9.1E-06 3.1E-10 78.5 2.6 27 1-27 322-353 (1054)
56 2fwr_A DNA repair protein RAD2 97.7 4.1E-06 1.4E-10 73.0 -0.0 54 1-72 397-454 (472)
57 2oca_A DAR protein, ATP-depend 97.6 8.4E-06 2.9E-10 71.7 -0.2 52 1-70 400-453 (510)
58 4f92_B U5 small nuclear ribonu 97.4 0.00018 6.2E-09 72.7 7.2 64 1-72 407-473 (1724)
59 4f92_B U5 small nuclear ribonu 97.3 0.00034 1.2E-08 70.8 7.7 71 1-79 1242-1318(1724)
60 4ddu_A Reverse gyrase; topoiso 97.2 4.9E-05 1.7E-09 73.9 -0.6 27 1-27 357-388 (1104)
61 1tf5_A Preprotein translocase 97.1 0.00032 1.1E-08 66.3 4.1 54 1-72 483-545 (844)
62 3jux_A Protein translocase sub 96.9 0.00052 1.8E-08 64.4 3.9 54 1-72 525-587 (822)
63 3h1t_A Type I site-specific re 96.9 0.00037 1.3E-08 62.5 2.9 44 1-62 502-545 (590)
64 2fsf_A Preprotein translocase 96.2 0.0039 1.4E-07 59.0 4.8 54 1-72 492-583 (853)
65 3dmq_A RNA polymerase-associat 95.9 0.0033 1.1E-07 60.2 2.8 54 1-72 559-615 (968)
66 1nkt_A Preprotein translocase 95.4 0.0093 3.2E-07 56.8 3.7 28 44-71 588-616 (922)
67 1z5z_A Helicase of the SNF2/RA 95.0 0.0095 3.3E-07 48.8 2.2 56 1-74 168-226 (271)
68 1z63_A Helicase of the SNF2/RA 94.4 0.03 1E-06 48.7 4.1 56 1-74 397-455 (500)
69 1z3i_X Similar to RAD54-like; 91.9 0.097 3.3E-06 47.7 3.5 55 1-73 472-529 (644)
70 3mwy_W Chromo domain-containin 91.4 0.085 2.9E-06 49.2 2.5 56 1-74 628-686 (800)
71 2w00_A HSDR, R.ECOR124I; ATP-b 89.7 0.18 6.2E-06 48.8 3.2 44 1-63 652-695 (1038)
72 3kvp_A Uncharacterized protein 39.4 59 0.002 21.0 4.6 28 19-46 33-60 (72)
73 4g5a_A Uncharacterized protein 27.9 9.6 0.00033 25.6 -0.6 23 145-167 5-27 (99)
74 1z63_A Helicase of the SNF2/RA 23.8 16 0.00054 31.2 -0.1 8 90-97 455-462 (500)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=9.4e-41 Score=313.22 Aligned_cols=117 Identities=49% Similarity=0.802 Sum_probs=114.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHH-HhccC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDF-RRMNK 79 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~-~~l~~ 79 (182)
||||||+||+||+||+|++|||+|+.|++.||+..|++.|.+.|+|++++.||+|||||.++|.||+||+++.| +.|.+
T Consensus 372 VlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~ 451 (773)
T 2xau_A 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIE 451 (773)
T ss_dssp EEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCS
T ss_pred EEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999 68999
Q ss_pred CCCChhccCChHHHHHHHHhcCC-CcccccCcCCCcccc
Q psy17746 80 NTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKEI 117 (182)
Q Consensus 80 ~~~PeI~r~~L~~~vL~lk~lg~-~~~~f~~~dpP~~~~ 117 (182)
+..|||++.+|.+++|+++++|+ ++..|+|+|||++++
T Consensus 452 ~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~ 490 (773)
T 2xau_A 452 QSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPET 490 (773)
T ss_dssp SCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHH
T ss_pred cCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHH
Confidence 99999999999999999999999 999999999998876
No 2
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=99.63 E-value=1.5e-16 Score=132.81 Aligned_cols=60 Identities=35% Similarity=0.716 Sum_probs=54.9
Q ss_pred ccceeEeeecccccCCCCCceeeeeeeeeccccceeeeeeeChhhhhhhCccccccCccc
Q psy17746 118 ESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGYAAQHRIV 177 (182)
Q Consensus 118 ~~~~~v~iHPsS~l~~~~p~~ivy~elv~t~~~yir~vs~i~~~WL~e~~p~~~~~~~~~ 177 (182)
.+++.++|||+|+||+.+|+||||+|++.|+|.|||+||+|+|+||.|++|+||+.++.+
T Consensus 194 ~~~~~v~iHPsS~L~~~~p~wvvy~Elv~Tsk~y~r~vt~I~p~wL~~~ap~~~~~~~~~ 253 (270)
T 3i4u_A 194 IDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAFFKVLEVD 253 (270)
T ss_dssp TTCCEEEECTTSTTTTSCCSEEEEEEEEESSSEEEEEEEECCHHHHHHHCTTTEECC---
T ss_pred cCCCEEEECchhhhcCCCCCEEEEEehhhhhHhHHHhccccCHHHHHHHhHHHhcccccc
Confidence 467899999999999999999999999999999999999999999999999999987765
No 3
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.55 E-value=5.4e-16 Score=124.04 Aligned_cols=98 Identities=20% Similarity=0.368 Sum_probs=82.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHH------
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEED------ 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~------ 73 (182)
|+||||+|+.+++||+|.+||+.|. |.|.++..||.||+||.+ +|.|+.+|+..+
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~ 145 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEA 145 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHH
T ss_pred EEEecChhhcCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHH
Confidence 6899999999999999999999877 457899999999999985 799999999876
Q ss_pred --------HHhccCCCCChhccCChHHHHHHHHhcCC-Ccccc-----cCcCCCccc
Q psy17746 74 --------FRRMNKNTVPEIQRTNLASTALTLLSLEI-NAATF-----DFMDKPPKE 116 (182)
Q Consensus 74 --------~~~l~~~~~PeI~r~~L~~~vL~lk~lg~-~~~~f-----~~~dpP~~~ 116 (182)
++.++....++|.+..+..+++.++.++. +...| +++++|+++
T Consensus 146 i~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 202 (212)
T 3eaq_A 146 LERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVE 202 (212)
T ss_dssp HHHHHSSCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHH
T ss_pred HHHHhcCcCeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHH
Confidence 34466777889999999999999999887 55555 567776554
No 4
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.54 E-value=2.1e-15 Score=139.16 Aligned_cols=94 Identities=22% Similarity=0.218 Sum_probs=67.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc---cceEEeecCHHH-HHh
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA---EGFCYRMYSEED-FRR 76 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~---~G~c~rL~t~~~-~~~ 76 (182)
|++|||++|++|+||++++|||+ ...||++++.. ..|+|++++.||+|||||.+ +|.||+||+++. ++.
T Consensus 341 vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~ 413 (715)
T 2va8_A 341 VIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDR 413 (715)
T ss_dssp EEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHH
T ss_pred EEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHH
Confidence 68999999999999999999998 56788776553 78999999999999999988 899999998765 322
Q ss_pred cc---CCCCChhccCChHH------HHHHHHhcC
Q psy17746 77 MN---KNTVPEIQRTNLAS------TALTLLSLE 101 (182)
Q Consensus 77 l~---~~~~PeI~r~~L~~------~vL~lk~lg 101 (182)
+. ....||+.+++|.. .+|.++.+|
T Consensus 414 ~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g 447 (715)
T 2va8_A 414 VFKKYVLSDVEPIESKLGSERAFYTFLLGILSAE 447 (715)
T ss_dssp HHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCceecCCchhHHHHHHHHHHhcc
Confidence 21 24578999998765 567777777
No 5
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.52 E-value=2.3e-15 Score=139.54 Aligned_cols=96 Identities=27% Similarity=0.346 Sum_probs=77.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc----cceEEeecCHH--HH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA----EGFCYRMYSEE--DF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~----~G~c~rL~t~~--~~ 74 (182)
|+||||++|++|+| +|++|||.|..|. .||+..+. ...|+|.+++.||+|||||.+ +|.||++++++ .+
T Consensus 375 VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~ 449 (677)
T 3rc3_A 375 ILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER---ELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLL 449 (677)
T ss_dssp EEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHH
T ss_pred EEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc---ccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHH
Confidence 68999999999999 9999999999998 88887443 367999999999999999988 58999999987 56
Q ss_pred HhccCCCCChhccCChHHHHHHHHhcC
Q psy17746 75 RRMNKNTVPEIQRTNLASTALTLLSLE 101 (182)
Q Consensus 75 ~~l~~~~~PeI~r~~L~~~vL~lk~lg 101 (182)
+++.....++|.+++|....++++.++
T Consensus 450 ~~~~~~~~~~i~~~~l~p~~~~l~~~~ 476 (677)
T 3rc3_A 450 KEILKRPVDPIRAAGLHPTAEQIEMFA 476 (677)
T ss_dssp HHHHHSCCCCCCCEEECCCHHHHHHHH
T ss_pred HHHHhcCcchhhhccCCChHHHHHHHh
Confidence 788889999999988888777777776
No 6
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.49 E-value=1.4e-15 Score=128.44 Aligned_cols=99 Identities=19% Similarity=0.370 Sum_probs=81.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHH------
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEED------ 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~------ 73 (182)
|+||||+||.+++||+|.+||+.|+ |.|.++..||.||+||.+ +|.||.+|+..+
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~------------------p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ 142 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRM------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEA 142 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSC------------------CSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHH
T ss_pred EEEEechhhcCccccceeEEEEcCC------------------CCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHH
Confidence 6899999999999999999999886 347889999999999985 799999999765
Q ss_pred --------HHhccCCCCChhccCChHHHHHHHHhcCC-Ccccc-----cCcCCCcccc
Q psy17746 74 --------FRRMNKNTVPEIQRTNLASTALTLLSLEI-NAATF-----DFMDKPPKEI 117 (182)
Q Consensus 74 --------~~~l~~~~~PeI~r~~L~~~vL~lk~lg~-~~~~f-----~~~dpP~~~~ 117 (182)
++.+.....+||.+.++..+++.++.++. +...| +++++|+++.
T Consensus 143 ie~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~ 200 (300)
T 3i32_A 143 LERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEV 200 (300)
T ss_dssp HHHHHTCCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHH
T ss_pred HHHHhCCcceEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHH
Confidence 44566778899999999999999998877 66666 5677777766
No 7
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.45 E-value=5.5e-14 Score=129.66 Aligned_cols=91 Identities=21% Similarity=0.283 Sum_probs=75.7
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc---cceEEeecCHHHHHhc
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA---EGFCYRMYSEEDFRRM 77 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~---~G~c~rL~t~~~~~~l 77 (182)
|++|||++|++++||++++|||+ ...|| +. ..|+|.++..||+|||||.+ +|.||+++++..++.+
T Consensus 325 vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~ 393 (702)
T 2p6r_A 325 VVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIA 393 (702)
T ss_dssp EEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHH
T ss_pred EEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHH
Confidence 68999999999999999999998 56777 22 68999999999999999988 8999999998876543
Q ss_pred cC---CCCChhccCChHH------HHHHHHhcCC
Q psy17746 78 NK---NTVPEIQRTNLAS------TALTLLSLEI 102 (182)
Q Consensus 78 ~~---~~~PeI~r~~L~~------~vL~lk~lg~ 102 (182)
.+ ...||+.+++|.. .+|.+...|.
T Consensus 394 ~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~ 427 (702)
T 2p6r_A 394 VKRYIFGEPERITSKLGVETHLRFHSLSIICDGY 427 (702)
T ss_dssp HHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTS
T ss_pred HHHHhcCCCCCceeecCcchhHHHHHHHHHHcCC
Confidence 22 4679999998775 4666677773
No 8
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.40 E-value=1.1e-13 Score=122.21 Aligned_cols=70 Identities=27% Similarity=0.326 Sum_probs=59.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeE---EEeeHHHHHhhcCcCCccc--cceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQV---TSISQAQAWQRTGRAGREA--EGFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~---~~isk~~a~qR~graGr~~--~G~c~rL~t~~ 72 (182)
|+||||++|.+++||+ ++|||+|..+.++++. .+...+.. .|.|+++..||+||+||.+ +|.||.+++..
T Consensus 239 iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~-~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 239 FVITTDISEMGANFGA-SRVIDCRKSVKPTILE-EGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EEEESSCC---CCCSC-SEEEECCEECCEEEEC-SSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred EEEECChHHhCeecCC-CEEEECCccccccccc-ccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 6899999999999999 9999999999988873 44555555 9999999999999999986 89999999874
No 9
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.28 E-value=1.6e-12 Score=120.23 Aligned_cols=71 Identities=25% Similarity=0.363 Sum_probs=62.7
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeE----EeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKT----HHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~----~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~ 74 (182)
|+||||+||.+|+|| |++|||+|+.+..+ |||..++.. ...|+|.++..||+||+||.++|. |.||+++++
T Consensus 442 VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~-~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~ 516 (666)
T 3o8b_A 442 VVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIET-TTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGER 516 (666)
T ss_dssp EEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEE-EEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCB
T ss_pred EEEECChHHccCCCC-CcEEEecCccccccccccccccccccc-ccCcCCHHHHHHHhccCCCCCCCE-EEEEecchh
Confidence 689999999999997 99999999999887 455577755 478999999999999999988899 999997654
No 10
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.25 E-value=1.1e-11 Score=109.06 Aligned_cols=68 Identities=25% Similarity=0.317 Sum_probs=62.4
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeE---EEeeHHHHHhhcCcCCccc--cceEEeecC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQV---TSISQAQAWQRTGRAGREA--EGFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~---~~isk~~a~qR~graGr~~--~G~c~rL~t 70 (182)
|+||||++|.+++||+ ++|||+|+.+...|| ..+...+.. .|.|.++..||+||+||.+ +|.||.++.
T Consensus 237 vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~ 309 (451)
T 2jlq_A 237 FVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 309 (451)
T ss_dssp EEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred EEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeC
Confidence 6899999999999999 999999999999999 667777776 9999999999999999988 789998875
No 11
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.24 E-value=6.6e-12 Score=116.06 Aligned_cols=92 Identities=22% Similarity=0.215 Sum_probs=69.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc---cceEEeecCHHHH---
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA---EGFCYRMYSEEDF--- 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~---~G~c~rL~t~~~~--- 74 (182)
|++|||++|.+++||++++|||.+ ..|| ..| ..|+|.++..||+|||||.+ +|.||.++++..+
T Consensus 323 vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~ 392 (720)
T 2zj8_A 323 AVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREV 392 (720)
T ss_dssp EEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHH
T ss_pred EEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHH
Confidence 689999999999999999999977 4566 233 26899999999999999987 7999999997653
Q ss_pred -HhccCCCCChhccC-----ChHHHHHHHHhcCC
Q psy17746 75 -RRMNKNTVPEIQRT-----NLASTALTLLSLEI 102 (182)
Q Consensus 75 -~~l~~~~~PeI~r~-----~L~~~vL~lk~lg~ 102 (182)
+.+.....+++... .|...++.+...|.
T Consensus 393 ~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~ 426 (720)
T 2zj8_A 393 MNHYIFGKPEKLFSQLSNESNLRSQVLALIATFG 426 (720)
T ss_dssp HHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCC
Confidence 34554555555433 34555666666663
No 12
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.19 E-value=2.5e-11 Score=106.68 Aligned_cols=69 Identities=30% Similarity=0.383 Sum_probs=62.7
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEE-eCCCCceeeeEEEeeHHHHHhhcCcCCcc--ccceEEeecC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTH-HPGTGLDVLQVTSISQAQAWQRTGRAGRE--AEGFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~-~~~~~~~~l~~~~isk~~a~qR~graGr~--~~G~c~rL~t 70 (182)
|+|||+++|.++.|| |++|||+|+.+.++| |...++......|.+.++..||+||+||. .+|.||.+|+
T Consensus 226 vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~ 297 (440)
T 1yks_A 226 FILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSE 297 (440)
T ss_dssp EEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred EEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEec
Confidence 689999999999999 999999999999988 45567888888999999999999999996 4799999984
No 13
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.15 E-value=5.4e-11 Score=109.10 Aligned_cols=69 Identities=23% Similarity=0.249 Sum_probs=62.9
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEE--eCCCCceeeeEEEeeHHHHHhhcCcCCccc--cceEEeecC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTH--HPGTGLDVLQVTSISQAQAWQRTGRAGREA--EGFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~--~~~~~~~~l~~~~isk~~a~qR~graGr~~--~G~c~rL~t 70 (182)
|+||||+||.+++|| |++|||+|+.+.+++ +...++......|+|.++..||+||+||.+ +|.||.+++
T Consensus 404 VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 404 FVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred EEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 689999999999997 999999999998877 555678888999999999999999999985 799999997
No 14
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.05 E-value=2.4e-10 Score=100.12 Aligned_cols=68 Identities=26% Similarity=0.267 Sum_probs=61.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t 70 (182)
|+|||+++|.++.|| +.+|||+|..+.++|| ..++......|.+.++..||+||+||.+. +.|+-+|.
T Consensus 220 vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 220 FVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred EEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 689999999999999 9999999999999999 78888899999999999999999999874 44666664
No 15
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.00 E-value=2.5e-10 Score=105.73 Aligned_cols=69 Identities=26% Similarity=0.283 Sum_probs=61.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeE--EeCCCCceeeeEEEeeHHHHHhhcCcCCcc--ccceEEeecC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKT--HHPGTGLDVLQVTSISQAQAWQRTGRAGRE--AEGFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~--~~~~~~~~~l~~~~isk~~a~qR~graGr~--~~G~c~rL~t 70 (182)
|+||||++|.+|.|| |.+|||+|....+. ||...++..+...|.|.++..||+||+||. ++|.||.++.
T Consensus 459 VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~ 531 (673)
T 2wv9_A 459 FVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGG 531 (673)
T ss_dssp EEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECS
T ss_pred EEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEe
Confidence 689999999999999 99999999877654 677777777788999999999999999998 5799999974
No 16
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.97 E-value=6.9e-11 Score=107.99 Aligned_cols=81 Identities=22% Similarity=0.319 Sum_probs=54.3
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHH------
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDF------ 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~------ 74 (182)
|+|||++||.+|+||+|.+||+.+. - .|..+..||+|| ||.++|.||.|+++...
T Consensus 464 vLVaT~v~~~GiDip~v~~VI~~d~--------p----------~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 464 ILIATSVADEGIDIAQCNLVILYEY--------V----------GNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp CSEEEESSCCC---CCCSEEEEESC--------C------------CCCC----------CCCEEEEEESCHHHHHHHHH
T ss_pred EEEEechhhcCCcCccCCEEEEeCC--------C----------CCHHHHHHhhcc-CcCCCceEEEEecCCCHHHHHHH
Confidence 6899999999999999999997443 2 334566799999 99999999999998766
Q ss_pred ----HhccCCCCChhccCChHHHHHHHHhc
Q psy17746 75 ----RRMNKNTVPEIQRTNLASTALTLLSL 100 (182)
Q Consensus 75 ----~~l~~~~~PeI~r~~L~~~vL~lk~l 100 (182)
+.+.....+++.+.++..++++++.+
T Consensus 525 ~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~ 554 (696)
T 2ykg_A 525 NMYKEKMMNDSILRLQTWDEAVFREKILHI 554 (696)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 45667778999999988887776644
No 17
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.79 E-value=2e-09 Score=91.57 Aligned_cols=57 Identities=30% Similarity=0.503 Sum_probs=43.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc-ccceEEeecCHHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE-AEGFCYRMYSEEDFR 75 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~-~~G~c~rL~t~~~~~ 75 (182)
|+|||+++|.++.+|++++||+.+. +.|.++..||.||+||. ++|.||.+|++++.+
T Consensus 333 vlv~T~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 390 (414)
T 3eiq_A 333 VLITTDLLARGIDVQQVSLVINYDL------------------PTNRENYIHRIGRGGRFGRKGVAINMVTEEDKR 390 (414)
T ss_dssp CEEECSSCC--CCGGGCSCEEESSC------------------CSSTHHHHHHSCCC-------CEEEEECSTHHH
T ss_pred EEEECCccccCCCccCCCEEEEeCC------------------CCCHHHhhhhcCcccCCCCCceEEEEEcHHHHH
Confidence 6899999999999999999998665 45788999999999998 469999999976553
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.73 E-value=4.7e-09 Score=87.37 Aligned_cols=57 Identities=25% Similarity=0.485 Sum_probs=50.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDFR 75 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~~ 75 (182)
|++||++++.++.+|++.+||+.+. |.|..+..||.||+||.+ +|.|+.++++++++
T Consensus 291 vlv~T~~~~~Gid~~~~~~Vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~ 348 (367)
T 1hv8_A 291 ILIATDVMSRGIDVNDLNCVINYHL------------------PQNPESYMHRIGRTGRAGKKGKAISIINRREYK 348 (367)
T ss_dssp EEEECTTHHHHCCCSCCSEEEESSC------------------CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHH
T ss_pred EEEECChhhcCCCcccCCEEEEecC------------------CCCHHHhhhcccccccCCCccEEEEEEcHHHHH
Confidence 6899999999999999999998765 457899999999999985 79999999976553
No 19
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.70 E-value=1.1e-08 Score=86.86 Aligned_cols=57 Identities=18% Similarity=0.316 Sum_probs=50.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc-ccceEEeecCHHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE-AEGFCYRMYSEEDFR 75 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~-~~G~c~rL~t~~~~~ 75 (182)
|++||+++|.++.+|++.+||+.+. |.|.++..||.||+||. ++|.|+.+|++++..
T Consensus 311 vLv~T~~~~~Gidip~~~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~ 368 (400)
T 1s2m_A 311 TLVCSDLLTRGIDIQAVNVVINFDF------------------PKTAETYLHRIGRSGRFGHLGLAINLINWNDRF 368 (400)
T ss_dssp EEEESSCSSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHH
T ss_pred EEEEcCccccCCCccCCCEEEEeCC------------------CCCHHHHHHhcchhcCCCCCceEEEEeccchHH
Confidence 6899999999999999999998654 45788999999999998 579999999987653
No 20
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.67 E-value=1.1e-08 Score=77.78 Aligned_cols=56 Identities=27% Similarity=0.479 Sum_probs=45.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc-ccceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE-AEGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~-~~G~c~rL~t~~~~ 74 (182)
|++||++++.++.+|++.+||+.+. |.|.++..||.||+||. ++|.|+.+++.+..
T Consensus 83 vlv~T~~~~~G~d~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~ 139 (165)
T 1fuk_A 83 ILISTDLLARGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDV 139 (165)
T ss_dssp EEEEEGGGTTTCCCCSCSEEEESSC------------------CSSGGGGGGSSCSCC-----CEEEEEEETTTH
T ss_pred EEEEcChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhcccccCCCCceEEEEEcchHH
Confidence 5899999999999999999998665 45778889999999997 56999999986543
No 21
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.64 E-value=1.3e-08 Score=86.64 Aligned_cols=56 Identities=27% Similarity=0.482 Sum_probs=48.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~ 74 (182)
|++||+++|.++.+|++.+||+.+. |.|..+..||.||+||.+ +|.|+.+|++++.
T Consensus 329 vlvaT~~~~~Gidip~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (417)
T 2i4i_A 329 ILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 385 (417)
T ss_dssp EEEECHHHHTTSCCCCEEEEEESSC------------------CSSHHHHHHHHTTBCC--CCEEEEEEECGGGG
T ss_pred EEEECChhhcCCCcccCCEEEEEcC------------------CCCHHHHHHhcCccccCCCCceEEEEEccccH
Confidence 6899999999999999999998665 457889999999999984 5999999998765
No 22
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.59 E-value=4.2e-08 Score=75.26 Aligned_cols=61 Identities=23% Similarity=0.453 Sum_probs=46.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc-ccceEEeecCHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE-AEGFCYRMYSEED 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~-~~G~c~rL~t~~~ 73 (182)
|++||++++.++.+|++.+||+.+.... +. ...+..+-.||.||+||. ++|.|+.+++...
T Consensus 87 vLvaT~~~~~Gid~~~~~~Vi~~d~p~~----~~--------~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 148 (175)
T 2rb4_A 87 VLITTNVCARGIDVKQVTIVVNFDLPVK----QG--------EEPDYETYLHRIGRTGRFGKKGLAFNMIEVDE 148 (175)
T ss_dssp EEEECCSCCTTTCCTTEEEEEESSCCC------C--------CSCCHHHHHHHHCBC----CCEEEEEEECGGG
T ss_pred EEEEecchhcCCCcccCCEEEEeCCCCC----cc--------ccCCHHHHHHHhcccccCCCCceEEEEEccch
Confidence 5899999999999999999998664311 10 126788899999999997 4699999998764
No 23
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.59 E-value=4.6e-08 Score=74.31 Aligned_cols=56 Identities=27% Similarity=0.439 Sum_probs=48.7
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~ 74 (182)
|++||++++.++.+|++.+||+.+. |.+.++-.||.||+||.+ +|.|+.+++..+.
T Consensus 88 vlv~T~~~~~Gld~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~ 144 (163)
T 2hjv_A 88 YLVATDVAARGIDIENISLVINYDL------------------PLEKESYVHRTGRTGRAGNKGKAISFVTAFEK 144 (163)
T ss_dssp EEEECGGGTTTCCCSCCSEEEESSC------------------CSSHHHHHHHTTTSSCTTCCEEEEEEECGGGH
T ss_pred EEEECChhhcCCchhcCCEEEEeCC------------------CCCHHHHHHhccccCcCCCCceEEEEecHHHH
Confidence 5899999999999999999998664 557889999999999974 6999999987543
No 24
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.57 E-value=2.9e-08 Score=84.05 Aligned_cols=61 Identities=25% Similarity=0.397 Sum_probs=50.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEED 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~ 73 (182)
|++||+++|.++.+|++.+||+.+......+ +.|.++..||.||+||.+ +|.|+.+++...
T Consensus 319 vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~------------~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 319 VLVTTNVCARGIDVEQVSVVINFDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp EEEECGGGTSSCCCTTEEEEEESSCCBCSSS------------SBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred EEEEcCccccCCCccCCCEEEEECCCCCCCC------------CcchheeecccCcccCCCCCceEEEEEcChh
Confidence 6899999999999999999998776433221 357789999999999965 499999998543
No 25
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.56 E-value=3.9e-08 Score=83.79 Aligned_cols=56 Identities=21% Similarity=0.475 Sum_probs=49.4
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc-ccceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE-AEGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~-~~G~c~rL~t~~~~ 74 (182)
|+|||++++.++.+|++.+||+.+. |-|.++..||.||+||. ++|.|+.++++++.
T Consensus 329 vlv~T~~~~~Gidi~~v~~Vi~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~ 385 (410)
T 2j0s_A 329 VLISTDVWARGLDVPQVSLIINYDL------------------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385 (410)
T ss_dssp EEEECGGGSSSCCCTTEEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGH
T ss_pred EEEECChhhCcCCcccCCEEEEECC------------------CCCHHHHHHhcccccCCCCceEEEEEecHHHH
Confidence 6899999999999999999998664 45788899999999998 56999999998764
No 26
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.55 E-value=3.8e-08 Score=94.64 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=51.4
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc---cceEEeecC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA---EGFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~---~G~c~rL~t 70 (182)
|++||++++.+|+||+ ++||..+..+ ||.. ...|+|.++..||+|||||.+ .|.||.++.
T Consensus 428 VLvAT~~~a~GIDiP~-~~VVi~~~~k---~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 428 VLFATETFAMGLNLPT-RTVIFSSIRK---HDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp EEEECTHHHHSCCCCC-SEEEESCSEE---EETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEEEECC
T ss_pred EEEEchHhhCCCCCCC-ceEEEecccc---ccCc------cCCCCCHHHHhHHhcccccCCCCcceEEEEecC
Confidence 6899999999999999 7777777766 5544 245999999999999999975 799999994
No 27
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=98.54 E-value=5.5e-08 Score=75.78 Aligned_cols=56 Identities=27% Similarity=0.482 Sum_probs=42.3
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~ 74 (182)
|++||++++.++.+|++.+||+.+. |.|.++-.||.||+||.+ +|.|+.+++....
T Consensus 99 vLvaT~~~~~Gldi~~~~~VI~~d~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 99 ILVATAVAARGLDISNVKHVINFDL------------------PSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 155 (185)
T ss_dssp EEEEEC------CCCSBSEEEESSC------------------CSSHHHHHHHHTTBCCTTSCEEEEEEECGGGG
T ss_pred EEEEcChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHccccCCCCCCcEEEEEEchhhH
Confidence 5899999999999999999998543 347888999999999975 6999999997643
No 28
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.54 E-value=3.3e-08 Score=82.95 Aligned_cols=60 Identities=23% Similarity=0.435 Sum_probs=49.9
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-ceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-GFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G~c~rL~t~~ 72 (182)
|++||+++|.++.+|++.+||+.+..+ +...+.|.++..||.||+||.+. |.|+.+++..
T Consensus 296 vlv~T~~~~~Gidip~~~~Vi~~~~p~------------~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 356 (395)
T 3pey_A 296 VLITTNVLARGIDIPTVSMVVNYDLPT------------LANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 356 (395)
T ss_dssp EEEECGGGSSSCCCTTEEEEEESSCCB------------CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred EEEECChhhcCCCcccCCEEEEcCCCC------------CCcCCCCHHHhhHhccccccCCCCceEEEEEech
Confidence 689999999999999999999876532 11235789999999999999855 9999999853
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.52 E-value=4.3e-08 Score=83.57 Aligned_cols=56 Identities=25% Similarity=0.381 Sum_probs=48.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~ 74 (182)
|+|||++++.++++|++.+||..+. |-+.++..||.||+||.++|.||+|+++...
T Consensus 422 vLv~T~~~~~Gldl~~~~~Vi~~d~------------------~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~ 477 (494)
T 1wp9_A 422 VLVATSVGEEGLDVPEVDLVVFYEP------------------VPSAIRSIQRRGRTGRHMPGRVIILMAKGTR 477 (494)
T ss_dssp EEEECGGGGGGGGSTTCCEEEESSC------------------CHHHHHHHHHHTTSCSCCCSEEEEEEETTSH
T ss_pred EEEECCccccCCCchhCCEEEEeCC------------------CCCHHHHHHHHhhccCCCCceEEEEEecCCH
Confidence 5899999999999999999995543 2467789999999999999999999997644
No 30
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.50 E-value=1.3e-08 Score=85.66 Aligned_cols=58 Identities=26% Similarity=0.453 Sum_probs=0.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc-ccceEEeecCHHHHHh
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE-AEGFCYRMYSEEDFRR 76 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~-~~G~c~rL~t~~~~~~ 76 (182)
|++||++++.++.+|++.+||+.+. +.|.++..||.||+||. ++|.|+.++++++.+.
T Consensus 312 vlv~T~~~~~Gldi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 312 ILISTDLLARGIDVQQVSLVINYDL------------------PANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHHcCcccCCCCCceEEEEEchhHHHH
Confidence 6899999999999999999997664 44677889999999997 5799999999876543
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.8e-07 Score=90.13 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=63.3
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc---cceEEeecCHH----H
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA---EGFCYRMYSEE----D 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~---~G~c~rL~t~~----~ 73 (182)
|++||++++.+|.||++++||+. ...||... ..|+|.++..||+|||||.+ .|.||.++++. .
T Consensus 435 VLVAT~~la~GIDiP~~~vVI~~----~~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~ 504 (1010)
T 2xgj_A 435 VLFATETFSIGLNMPAKTVVFTS----VRKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQV 504 (1010)
T ss_dssp EEEEEGGGGGSTTCCBSEEEESC----SEEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHH
T ss_pred EEEEehHhhccCCCCCceEEEeC----CcccCCcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHH
Confidence 68999999999999999999985 23466443 46899999999999999987 49999999854 3
Q ss_pred HHhccCCCCChhccCChH---HHHHHHHh
Q psy17746 74 FRRMNKNTVPEIQRTNLA---STALTLLS 99 (182)
Q Consensus 74 ~~~l~~~~~PeI~r~~L~---~~vL~lk~ 99 (182)
+..|... .++.+++.+. +.+|.+.+
T Consensus 505 ~~~l~~~-~~~~l~s~f~~~~~~ilnll~ 532 (1010)
T 2xgj_A 505 AKGMVKG-QADRLDSAFHLGYNMILNLMR 532 (1010)
T ss_dssp HHHHHSC-CCCCCCCCCCCCHHHHHHHHH
T ss_pred HHHHHhC-CCcccccccCCcHHHHHHHHH
Confidence 3444332 2333344433 44555443
No 32
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.49 E-value=6.4e-08 Score=93.98 Aligned_cols=62 Identities=26% Similarity=0.343 Sum_probs=51.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc---cceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA---EGFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~---~G~c~rL~t~~ 72 (182)
|++||++++.+|+||++++||+... .||.. ...|+|.++..||+|||||.+ .|.||.++++.
T Consensus 533 VLVAT~vla~GIDiP~v~~VI~~~~----~~d~~------~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 533 VLFATETFSIGLNMPAKTVVFTSVR----KWDGQ------QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp EEEEESCCCSCCCC--CEEEESCSE----EESSS------CEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred EEEECcHHhcCCCCCCceEEEecCc----ccCcc------ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 6899999999999999999997654 23333 246899999999999999988 79999999864
No 33
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.48 E-value=3.1e-08 Score=87.20 Aligned_cols=55 Identities=25% Similarity=0.348 Sum_probs=29.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~ 74 (182)
|+|||++++.++.||+|.+||. ||+ |-|..+..||.|| ||.++|.||.|+++...
T Consensus 456 vLvaT~~~~~GiDip~v~~VI~--------~d~----------p~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 456 LLIATSVADEGIDIVQCNLVVL--------YEY----------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 510 (556)
T ss_dssp EEEEEC-----------CEEEE--------ETC----------CSCHHHHHHC---------CCEEEEESCHHH
T ss_pred EEEEcCchhcCCCchhCCEEEE--------eCC----------CCCHHHHHHhcCC-CCCCCceEEEEEeCcch
Confidence 6899999999999999999995 443 3467889999999 99999999999998755
No 34
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.47 E-value=1.2e-07 Score=86.49 Aligned_cols=57 Identities=30% Similarity=0.515 Sum_probs=50.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDFR 75 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~~ 75 (182)
|+|||++++.+|.+|+|++||+.+..+ |.++-.||.|||||.+ +|.|+-+|+..+..
T Consensus 320 VlVAT~a~~~GID~p~V~~VI~~~~p~------------------s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~ 377 (591)
T 2v1x_A 320 VVVATVAFGMGIDKPDVRFVIHHSMSK------------------SMENYYQESGRAGRDDMKADCILYYGFGDIF 377 (591)
T ss_dssp EEEECTTSCTTCCCSCEEEEEESSCCS------------------SHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred EEEEechhhcCCCcccccEEEEeCCCC------------------CHHHHHHHhccCCcCCCCceEEEEEChHHHH
Confidence 689999999999999999999877643 7889999999999974 69999999988764
No 35
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.45 E-value=1.4e-07 Score=79.34 Aligned_cols=55 Identities=22% Similarity=0.402 Sum_probs=48.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc-ccceEEeecCHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE-AEGFCYRMYSEED 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~-~~G~c~rL~t~~~ 73 (182)
|++||++++.++.+|++.+||..+. |-|.++..||.||+||. ++|.|+.+++.+.
T Consensus 303 vlv~T~~~~~Gidi~~~~~Vi~~~~------------------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 358 (391)
T 1xti_A 303 ILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDEN 358 (391)
T ss_dssp EEEESCCCSSCBCCTTEEEEEESSC------------------CSSHHHHHHHHCBCSSSCCCCEEEEEECSHH
T ss_pred EEEECChhhcCCCcccCCEEEEeCC------------------CCCHHHHHHhcccccCCCCceEEEEEEcccc
Confidence 6899999999999999999998665 34788999999999997 4699999998653
No 36
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.44 E-value=1.6e-07 Score=84.16 Aligned_cols=56 Identities=27% Similarity=0.471 Sum_probs=50.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~ 74 (182)
|+|||++++.+|.+|+|++||..+. |-|.++..||.|||||.+ +|.|+-+|+.++.
T Consensus 289 vlVaT~a~~~GiD~p~v~~VI~~~~------------------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~ 345 (523)
T 1oyw_A 289 IVVATVAFGMGINKPNVRFVVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADM 345 (523)
T ss_dssp EEEECTTSCTTTCCTTCCEEEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHH
T ss_pred EEEEechhhCCCCccCccEEEEECC------------------CCCHHHHHHHhccccCCCCCceEEEEeCHHHH
Confidence 6899999999999999999998765 457889999999999976 6999999998765
No 37
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.42 E-value=1e-07 Score=78.35 Aligned_cols=54 Identities=22% Similarity=0.390 Sum_probs=46.7
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~ 72 (182)
|++||++++.++.+|++.+||+.+. |.|.++..||.||+||.+ +|.|+.++..+
T Consensus 269 vlv~T~~~~~Gid~~~~~~Vi~~~~------------------~~s~~~~~Q~~GR~gR~g~~g~~~~~~~~~ 323 (337)
T 2z0m_A 269 MLITTDVASRGLDIPLVEKVINFDA------------------PQDLRTYIHRIGRTGRMGRKGEAITFILNE 323 (337)
T ss_dssp EEEECHHHHTTCCCCCBSEEEESSC------------------CSSHHHHHHHHTTBCGGGCCEEEEEEESSC
T ss_pred EEEEcCccccCCCccCCCEEEEecC------------------CCCHHHhhHhcCccccCCCCceEEEEEeCc
Confidence 6899999999999999999998664 346788999999999974 69999999833
No 38
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.40 E-value=3.4e-08 Score=86.68 Aligned_cols=77 Identities=22% Similarity=0.317 Sum_probs=54.9
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHHH-----
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDFR----- 75 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~~----- 75 (182)
|+|||++++.++.+|++.+||. ||+-. |..+-.||.|| ||..+|.||.|+++...+
T Consensus 455 vLvaT~~~~~GlDlp~v~~VI~--------~d~p~----------s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 455 ILIATSVADEGIDIAECNLVIL--------YEYVG----------NVIKMIQTRGR-GRARDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp EEEECCCTTCCEETTSCSEEEE--------ESCCS----------SCCCEECSSCC-CTTTSCEEEEEESCHHHHHHHHH
T ss_pred EEEEcchhhcCCccccCCEEEE--------eCCCC----------CHHHHHHhcCc-CcCCCceEEEEEcCCCHHHHHHH
Confidence 6899999999999999999996 44332 23344699999 999999999999976542
Q ss_pred -----hccCCCCChhccCChHHHHHH
Q psy17746 76 -----RMNKNTVPEIQRTNLASTALT 96 (182)
Q Consensus 76 -----~l~~~~~PeI~r~~L~~~vL~ 96 (182)
.+.....+++...+...+...
T Consensus 516 ~~~~e~~~~~~~~~~~~~~~~~~~~~ 541 (555)
T 3tbk_A 516 NMIKEKIMNESILRLQTWDEMKFGKT 541 (555)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hhHHHHHHHHHHHhccCCChHHHHHH
Confidence 233344455555554444333
No 39
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=97.76 E-value=3.6e-08 Score=75.37 Aligned_cols=56 Identities=23% Similarity=0.442 Sum_probs=47.4
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~ 74 (182)
|++||++++.++.+|++.+||+.+. |.|.++-.||.||+||.+ +|.|+.+++..+.
T Consensus 83 vLvaT~~~~~Gid~~~~~~Vi~~~~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~ 139 (170)
T 2yjt_D 83 VLVATDVAARGIDIPDVSHVFNFDM------------------PRSGDTYLHRIGRTARAGRKGTAISLVEAHDH 139 (170)
Confidence 6899999999999999999997654 345667789999999975 6999999987644
No 40
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=98.36 E-value=1.9e-07 Score=73.11 Aligned_cols=54 Identities=22% Similarity=0.427 Sum_probs=45.4
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~ 72 (182)
|++||++++.++.+|++.+||+.+. |.+..+-.||.||+||.+ +|.|+.+++..
T Consensus 107 vLvaT~~~~~Gldi~~v~~VI~~d~------------------p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 107 VLVATDVASKGLDFPAIQHVINYDM------------------PEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp EEEECHHHHTTCCCCCCSEEEESSC------------------CSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred EEEEcCchhcCCCcccCCEEEEeCC------------------CCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 5899999999999999999998553 456788899999999974 69999999853
No 41
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.34 E-value=2.6e-07 Score=80.45 Aligned_cols=53 Identities=25% Similarity=0.441 Sum_probs=46.7
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc-ccceEEeecCH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE-AEGFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~-~~G~c~rL~t~ 71 (182)
|+|||++|+.++.||+|.+||+.+. |.+.++-.||.||+||. +.|.|+.+|+.
T Consensus 353 vLvaT~v~~rGlDi~~v~~VI~~d~------------------p~~~~~y~qriGR~gR~g~~G~a~~~~~~ 406 (434)
T 2db3_A 353 VLIATSVASRGLDIKNIKHVINYDM------------------PSKIDDYVHRIGRTGRVGNNGRATSFFDP 406 (434)
T ss_dssp EEEECGGGTSSCCCTTCCEEEESSC------------------CSSHHHHHHHHTTSSCTTCCEEEEEEECT
T ss_pred EEEEchhhhCCCCcccCCEEEEECC------------------CCCHHHHHHHhcccccCCCCCEEEEEEec
Confidence 6899999999999999999998654 34678899999999997 55999999984
No 42
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.32 E-value=2.6e-07 Score=82.31 Aligned_cols=56 Identities=21% Similarity=0.454 Sum_probs=48.4
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~ 74 (182)
|+|||++++.+|.||+|++||..+. |.|..+-.||.||+||.+ +|.|+-+++..+.
T Consensus 395 vLvaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 451 (563)
T 3i5x_A 395 ILVCTDVGARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFICKDEL 451 (563)
T ss_dssp EEEECGGGTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred EEEEcchhhcCCCcccCCEEEEECC------------------CCchhhhhhhcCccccCCCCceEEEEEchhHH
Confidence 6899999999999999999997664 346788999999999985 6999999987643
No 43
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.28 E-value=9.5e-08 Score=83.65 Aligned_cols=61 Identities=25% Similarity=0.397 Sum_probs=0.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEED 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~ 73 (182)
|+|||++++.++.||+|++||+.++.....+ +.|..+..||.||+||.+ +|.|+.+++...
T Consensus 386 iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~------------~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 386 VLVTTNVCARGIDVEQVSVVINFDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEEEccccccCCccccCCEEEEecCCCCCcc------------CCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 6899999999999999999998776433221 345677899999999965 499999998654
No 44
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.27 E-value=2.2e-07 Score=86.82 Aligned_cols=55 Identities=25% Similarity=0.348 Sum_probs=33.9
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~~ 74 (182)
|+|||++++.+|.||++.+||. ||+ |-|..+..||.|| ||.++|.||+|+++...
T Consensus 697 vLVaT~~~~~GIDlp~v~~VI~--------yd~----------p~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 697 LLIATSVADEGIDIVQCNLVVL--------YEY----------SGNVTKMIQVRGR-GRAAGSKCILVTSKTEV 751 (797)
T ss_dssp EEEEECC-------CCCSEEEE--------ESC----------CSCHHHHHTC--------CCCEEEEECCHHH
T ss_pred EEEEcCchhcCCCchhCCEEEE--------eCC----------CCCHHHHHHhcCC-CCCCCceEEEEEeCCcH
Confidence 6899999999999999999995 443 3467889999999 99999999999997644
No 45
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.25 E-value=4.4e-07 Score=81.64 Aligned_cols=56 Identities=21% Similarity=0.454 Sum_probs=48.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~~~ 74 (182)
|+|||++++.+|.||+|++||..+. |-|..+..||.||+||.+ +|.|+-+++..+.
T Consensus 344 vLVaT~~~~~GiDip~v~~VI~~~~------------------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 344 ILVCTDVGARGMDFPNVHEVLQIGV------------------PSELANYIHRIGRTARSGKEGSSVLFICKDEL 400 (579)
T ss_dssp EEEECGGGTSSCCCTTCCEEEEESC------------------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred EEEEcchhhcCCCcccCCEEEEcCC------------------CCCHHHhhhhccccccCCCCceEEEEEcccHH
Confidence 6899999999999999999997664 346788999999999986 6999999997653
No 46
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.23 E-value=4.2e-07 Score=69.73 Aligned_cols=54 Identities=22% Similarity=0.395 Sum_probs=46.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~ 72 (182)
|++||++++.++.+|++.+||..+. |.|.++-.||.||+||.+ +|.|+-+++..
T Consensus 84 vLvaT~~~~~Gldi~~~~~Vi~~d~------------------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 84 ILVATNLFGRGMDIERVNIAFNYDM------------------PEDSDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp EEEESSCCSTTCCGGGCSEEEESSC------------------CSSHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred EEEECCchhcCcchhhCCEEEEECC------------------CCCHHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 5899999999999999999997553 457788999999999975 59999999853
No 47
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.21 E-value=6.8e-07 Score=76.55 Aligned_cols=57 Identities=25% Similarity=0.319 Sum_probs=47.7
Q ss_pred CEEE----ecccccCCCCCC-ceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-----cceEEeecC
Q psy17746 1 IILA----TNIAETSITVPG-IKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-----EGFCYRMYS 70 (182)
Q Consensus 1 vila----TniaEtsiti~~-v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-----~G~c~rL~t 70 (182)
|++| |++++.++.||+ |++||+.|..+. .|.++-.||.||+||.+ .|.|+-++.
T Consensus 300 vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~----------------~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 300 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSG----------------PDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTT----------------TCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred EEEEecCcCchhhccCccccccCEEEEECCCCC----------------CCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 5789 999999999999 999997665320 57788999999999975 699999996
Q ss_pred HHH
Q psy17746 71 EED 73 (182)
Q Consensus 71 ~~~ 73 (182)
+..
T Consensus 364 ~~~ 366 (414)
T 3oiy_A 364 DEE 366 (414)
T ss_dssp CHH
T ss_pred cHH
Confidence 543
No 48
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.20 E-value=5.1e-07 Score=80.23 Aligned_cols=59 Identities=19% Similarity=0.352 Sum_probs=36.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~ 71 (182)
|++||++++.++.+|++++||+.+..... ..+-|..+-.||+||+||.+ +|.|+.+++.
T Consensus 410 VLVaT~~l~~GiDip~v~~VI~~~~p~~~------------~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~ 469 (508)
T 3fho_A 410 VLVTTNVIARGIDVSQVNLVVNYDMPLDQ------------AGRPDPQTYLHRIGRTGRFGRVGVSINFVHD 469 (508)
T ss_dssp CCEECC-----CCCTTCCEEEC----CC-----------------CTHHHHHTTSCCC-----CEEEEEECT
T ss_pred EEEeCChhhcCCCccCCCEEEEECCCCcc------------cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeC
Confidence 68999999999999999999976643211 11256788899999999976 6999999984
No 49
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.07 E-value=1.1e-06 Score=81.05 Aligned_cols=59 Identities=22% Similarity=0.279 Sum_probs=49.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~ 72 (182)
|++|||+++.++.+|+|++||.++..+. | .+.|..+..||.||+||.++|.|+-+++..
T Consensus 492 VLvaT~~l~~GlDip~v~lVI~~d~d~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 492 CLVGINLLREGLDIPEVSLVAILDADKE-------G------FLRSERSLIQTIGRAARNARGEVWLYADRV 550 (664)
T ss_dssp EEEESCCCCTTCCCTTEEEEEETTTTSC-------S------GGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred EEEccChhhcCccCCCCCEEEEeCCccc-------C------CCCCHHHHHHHHCccCcCCCCEEEEEEcCC
Confidence 5899999999999999999998775322 1 155788999999999999999999999753
No 50
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.06 E-value=9.4e-07 Score=84.33 Aligned_cols=54 Identities=26% Similarity=0.354 Sum_probs=34.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEED 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~~ 73 (182)
|+|||++++.+|.||+|.+||. ||+ |-|..+..||.|| ||.++|.||.|+++..
T Consensus 697 VLVaT~~~~eGIDlp~v~~VI~--------yD~----------p~s~~~~iQr~GR-GR~~~g~vi~Li~~~t 750 (936)
T 4a2w_A 697 LLIATSVADEGIDIVQCNLVVL--------YEY----------SGNVTKMIQVRGR-GRAAGSKCILVTSKTE 750 (936)
T ss_dssp EEEEECC------CCCCSEEEE--------ESC----------CSCSHHHHCC--------CCCEEEEESCHH
T ss_pred EEEEeCchhcCCcchhCCEEEE--------eCC----------CCCHHHHHHhcCC-CCCCCCEEEEEEeCCC
Confidence 6899999999999999999995 444 3466788999999 9999999999999754
No 51
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.03 E-value=1.3e-06 Score=80.52 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=49.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~~ 72 (182)
|++|||+++.++.+|+|++||..+..+. |. +.|..+..||.||+||..+|.|+-+++..
T Consensus 498 VLVaT~~l~~GlDip~v~lVi~~d~d~~-------G~------p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 556 (661)
T 2d7d_A 498 VLVGINLLREGLDIPEVSLVAILDADKE-------GF------LRSERSLIQTIGRAARNAEGRVIMYADKI 556 (661)
T ss_dssp EEEESCCCSTTCCCTTEEEEEETTTTCC-------TT------TTSHHHHHHHHHTTTTSTTCEEEEECSSC
T ss_pred EEEecchhhCCcccCCCCEEEEeCcccc-------cC------CCCHHHHHHHhCcccCCCCCEEEEEEeCC
Confidence 5899999999999999999998775221 21 55788999999999999999999999763
No 52
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.03 E-value=9.2e-07 Score=80.65 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=53.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccceEEeecCH-HH------
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSE-ED------ 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~c~rL~t~-~~------ 73 (182)
|+|||++++.+|.||+|.+|| .||+ |-|.++..||.|||||. |.++.++.. +.
T Consensus 467 VLVaT~~~~~GIDip~v~~VI--------~~d~----------p~s~~~~~Qr~GRArr~--g~~~~l~~~~~~~~~~~~ 526 (699)
T 4gl2_A 467 LLIATTVAEEGLDIKECNIVI--------RYGL----------VTNEIAMVQARGRARAD--ESTYVLVAHSGSGVIERE 526 (699)
T ss_dssp CSEEECSCCTTSCCCSCCCCE--------EESC----------CCCHHHHHHHHTTSCSS--SCEEEEEEESSSCSHHHH
T ss_pred EEEEccccccCCccccCCEEE--------EeCC----------CCCHHHHHHHcCCCCCC--CceEEEEEeCCchHHHHH
Confidence 689999999999999999999 3443 34578899999998875 445545442 21
Q ss_pred -----HHhccCCCCChhccCChHHHHHHHHhc
Q psy17746 74 -----FRRMNKNTVPEIQRTNLASTALTLLSL 100 (182)
Q Consensus 74 -----~~~l~~~~~PeI~r~~L~~~vL~lk~l 100 (182)
.+.+.....+++.+.+.......++.+
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 558 (699)
T 4gl2_A 527 TVNDFREKMMYKAIHCVQNMKPEEYAHKILEL 558 (699)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 223334445666666666655444433
No 53
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=97.95 E-value=2e-06 Score=80.90 Aligned_cols=53 Identities=30% Similarity=0.563 Sum_probs=43.8
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc-ccceEEeecC
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE-AEGFCYRMYS 70 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~-~~G~c~rL~t 70 (182)
|+|||+++|.++.||++.+||.-+ +.. .+.++..||+||+||. .+|.||-+++
T Consensus 642 ILVaT~vie~GIDiP~v~~VIi~d--------~~r---------~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 642 ILVSTTVIEVGIDVPRANVMVIEN--------PER---------FGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp BCCCSSCCCSCSCCTTCCEEEBCS--------CSS---------SCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred EEEECCCCCccccCCCCCEEEEeC--------CCC---------CCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 579999999999999999999543 221 2457889999999995 4699999997
No 54
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=97.77 E-value=1.3e-05 Score=78.16 Aligned_cols=55 Identities=25% Similarity=0.445 Sum_probs=43.3
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~~ 72 (182)
|+|||+++|.++.||++.+||- +++.. .+-++..||+||+||.+ .|.||-+++.+
T Consensus 867 VLVaT~v~e~GiDip~v~~VIi--------~~~~~---------~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 867 VLVCTTIIETGIDIPTANTIII--------ERADH---------FGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EEEESSTTGGGSCCTTEEEEEE--------TTTTS---------SCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EEEECCcceeeecccCCcEEEE--------eCCCC---------CCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 6899999999999999999982 22211 12357899999999955 69999998753
No 55
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.75 E-value=9.1e-06 Score=78.54 Aligned_cols=27 Identities=7% Similarity=0.209 Sum_probs=19.8
Q ss_pred CEEE----ecccccCCCCCCc-eEEEeCCeEE
Q psy17746 1 IILA----TNIAETSITVPGI-KYVIDSGLVK 27 (182)
Q Consensus 1 vila----TniaEtsiti~~v-~~VID~G~~k 27 (182)
|+|| ||++|.+|.||+| ++||+.|..+
T Consensus 322 VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~ 353 (1054)
T 1gku_B 322 HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS 353 (1054)
T ss_dssp EEEEECC------CCSCCTTTCCEEEEESCCE
T ss_pred EEEEecCCCCeeEeccccCCcccEEEEeCCCc
Confidence 5788 9999999999995 9999999984
No 56
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=97.74 E-value=4.1e-06 Score=72.96 Aligned_cols=54 Identities=26% Similarity=0.327 Sum_probs=44.3
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccc----eEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEG----FCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G----~c~rL~t~~ 72 (182)
|+|||++++.++.+|++.+||.. |+ +-|.++..||.||+||.++| .+|.|.++.
T Consensus 397 vLv~T~~~~~Gldlp~~~~Vi~~--------~~----------~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 397 AIVSSQVLDEGIDVPDANVGVIM--------SG----------SGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp BCBCSSCCCSSSCSCCBSEEEEE--------CC----------SSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred EEEEcCchhcCcccccCcEEEEE--------CC----------CCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 57999999999999999999963 32 33568899999999999877 577777754
No 57
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=97.59 E-value=8.4e-06 Score=71.67 Aligned_cols=52 Identities=23% Similarity=0.233 Sum_probs=42.8
Q ss_pred CEEEe-cccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccce-EEeecC
Q psy17746 1 IILAT-NIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGF-CYRMYS 70 (182)
Q Consensus 1 vilaT-niaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G~-c~rL~t 70 (182)
|+||| +++|+++.+|++.+||-.+. +-|.++..||.||+||.++|. ++.+|+
T Consensus 400 vLv~T~~~~~~GiDip~v~~vi~~~~------------------~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 400 IIVASYGVFSTGISVKNLHHVVLAHG------------------VKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEEEHHHHHHSCCCCSEEEEEESSC------------------CCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred EEEEEcChhhcccccccCcEEEEeCC------------------CCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 68999 99999999999999995432 234578899999999988865 777776
No 58
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.45 E-value=0.00018 Score=72.70 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=54.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc---cceEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA---EGFCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~---~G~c~rL~t~~ 72 (182)
|++||+.++.+|.+|.++.||.. ...||+..|. ..++|.++-.||.|||||.+ .|.++-+.+++
T Consensus 407 vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~ 473 (1724)
T 4f92_B 407 VLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEGILITSHG 473 (1724)
T ss_dssp EEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEEST
T ss_pred EEEEcchhHhhCCCCCceEEEeC----CEEecCcCCC----cccCCHHHHHHhhhhccCCCCCCccEEEEEecch
Confidence 68999999999999999988843 4568988763 46899999999999999965 58999887764
No 59
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.35 E-value=0.00034 Score=70.77 Aligned_cols=71 Identities=17% Similarity=0.163 Sum_probs=55.4
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc---cceEEeecCHH---HH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA---EGFCYRMYSEE---DF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~---~G~c~rL~t~~---~~ 74 (182)
|++||+.++.+|.+|.+.+||..- ..||.... ...+.+-.+-.||.|||||.+ .|.|+-++... .|
T Consensus 1242 VLvaT~tlA~GVnlPa~~VVI~~~----~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~ 1313 (1724)
T 4f92_B 1242 VVVASRSLCWGMNVAAHLVIIMDT----QYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFF 1313 (1724)
T ss_dssp EEEEEGGGSSSCCCCBSEEEEECS----EEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHH
T ss_pred EEEEChHHHcCCCCCccEEEEecC----ccccCccc----ccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHH
Confidence 689999999999999999999653 35776544 346888999999999999965 59999988754 34
Q ss_pred HhccC
Q psy17746 75 RRMNK 79 (182)
Q Consensus 75 ~~l~~ 79 (182)
+.+..
T Consensus 1314 ~~ll~ 1318 (1724)
T 4f92_B 1314 KKFLY 1318 (1724)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 44443
No 60
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.16 E-value=4.9e-05 Score=73.88 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=25.7
Q ss_pred CEEE----ecccccCCCCCC-ceEEEeCCeEE
Q psy17746 1 IILA----TNIAETSITVPG-IKYVIDSGLVK 27 (182)
Q Consensus 1 vila----TniaEtsiti~~-v~~VID~G~~k 27 (182)
|+|| ||+++.+|.||+ |++||+.|+.+
T Consensus 357 VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 357 ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp EEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred EEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 5789 999999999999 99999999988
No 61
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=97.08 E-value=0.00032 Score=66.29 Aligned_cols=54 Identities=28% Similarity=0.304 Sum_probs=45.1
Q ss_pred CEEEecccccCCCCC--------CceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCH
Q psy17746 1 IILATNIAETSITVP--------GIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~--------~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~ 71 (182)
|.||||+|--++.|+ |+.+||.+.+ |-|+..=.||+||+||.+ +|.+.-+.+.
T Consensus 483 VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~------------------p~s~r~y~hr~GRTGRqG~~G~s~~~vs~ 544 (844)
T 1tf5_A 483 VTIATNMAGRGTDIKLGEGVKELGGLAVVGTER------------------HESRRIDNQLRGRSGRQGDPGITQFYLSM 544 (844)
T ss_dssp EEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC------------------CSSHHHHHHHHTTSSGGGCCEEEEEEEET
T ss_pred EEEeCCccccCcCccccchhhhcCCcEEEEecC------------------CCCHHHHHhhcCccccCCCCCeEEEEecH
Confidence 579999999999999 8899998776 456677789999999975 4998877775
Q ss_pred H
Q psy17746 72 E 72 (182)
Q Consensus 72 ~ 72 (182)
+
T Consensus 545 e 545 (844)
T 1tf5_A 545 E 545 (844)
T ss_dssp T
T ss_pred H
Confidence 4
No 62
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=96.93 E-value=0.00052 Score=64.35 Aligned_cols=54 Identities=30% Similarity=0.312 Sum_probs=43.9
Q ss_pred CEEEecccccCCCCC--------CceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc-cceEEeecCH
Q psy17746 1 IILATNIAETSITVP--------GIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA-EGFCYRMYSE 71 (182)
Q Consensus 1 vilaTniaEtsiti~--------~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~-~G~c~rL~t~ 71 (182)
|.||||+|.-++-|+ |+.+||.+-+ |-|+..=.||.||+||.+ ||.+.-+.+.
T Consensus 525 VtVATdmAgRGtDI~lg~~V~~~GglhVInte~------------------Pes~r~y~qriGRTGRqG~~G~a~~fvsl 586 (822)
T 3jux_A 525 VTIATNMAGRGTDIKLGPGVAELGGLCIIGTER------------------HESRRIDNQLRGRAGRQGDPGESIFFLSL 586 (822)
T ss_dssp EEEEETTTTTTCCCCCCTTTTTTTSCEEEESSC------------------CSSHHHHHHHHTTSSCSSCCCEEEEEEET
T ss_pred EEEEcchhhCCcCccCCcchhhcCCCEEEecCC------------------CCCHHHHHHhhCccccCCCCeeEEEEech
Confidence 689999999999998 6679997776 445666789999999976 5998777765
Q ss_pred H
Q psy17746 72 E 72 (182)
Q Consensus 72 ~ 72 (182)
+
T Consensus 587 e 587 (822)
T 3jux_A 587 E 587 (822)
T ss_dssp T
T ss_pred h
Confidence 4
No 63
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.93 E-value=0.00037 Score=62.47 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=35.6
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE 62 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~ 62 (182)
|+++|+++++++.+|++..||- |++ +-|...-.||.||+||.++
T Consensus 502 ilvtt~~l~~GiDip~v~~Vi~--------~~~----------~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 502 ILTTSQLLTTGVDAPTCKNVVL--------ARV----------VNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EEEESSTTTTTCCCTTEEEEEE--------ESC----------CCCHHHHHHHHTTSCCCBG
T ss_pred EEEECChhhcCccchheeEEEE--------Eec----------CCChHHHHHHHhhhcccCc
Confidence 3567899999999999999993 332 2356778999999999876
No 64
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=96.21 E-value=0.0039 Score=58.98 Aligned_cols=54 Identities=26% Similarity=0.279 Sum_probs=43.1
Q ss_pred CEEEecccccCCCCCC--------------------------------c-----eEEEeCCeEEEeEEeCCCCceeeeEE
Q psy17746 1 IILATNIAETSITVPG--------------------------------I-----KYVIDSGLVKQKTHHPGTGLDVLQVT 43 (182)
Q Consensus 1 vilaTniaEtsiti~~--------------------------------v-----~~VID~G~~k~~~~~~~~~~~~l~~~ 43 (182)
|.||||+|--++.|+. | .+||.+.+
T Consensus 492 VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~------------------ 553 (853)
T 2fsf_A 492 VTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTER------------------ 553 (853)
T ss_dssp EEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSC------------------
T ss_pred EEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccC------------------
Confidence 5799999999999987 4 59997766
Q ss_pred EeeHHHHHhhcCcCCcccc-ceEEeecCHH
Q psy17746 44 SISQAQAWQRTGRAGREAE-GFCYRMYSEE 72 (182)
Q Consensus 44 ~isk~~a~qR~graGr~~~-G~c~rL~t~~ 72 (182)
+-|+..=.||+||+||.+. |...-+.+.+
T Consensus 554 pes~riy~qr~GRTGRqGd~G~s~~fls~e 583 (853)
T 2fsf_A 554 HESRRIDNQLRGRSGRQGDAGSSRFYLSME 583 (853)
T ss_dssp CSSHHHHHHHHTTSSGGGCCEEEEEEEETT
T ss_pred CCCHHHHHhhccccccCCCCeeEEEEeccc
Confidence 4567777899999999654 9877666643
No 65
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=95.91 E-value=0.0033 Score=60.22 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=41.0
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcccc-c--eEEeecCHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAE-G--FCYRMYSEE 72 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~-G--~c~rL~t~~ 72 (182)
|+|||++++.++.+|++..||... + |-+.++-.||.||+||.+. | ..|+++.+.
T Consensus 559 vLvaT~v~~~GlDl~~~~~VI~~d--------~----------p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 559 VLLCSEIGSEGRNFQFASHMVMFD--------L----------PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEK 615 (968)
T ss_dssp EEECSCCTTCSSCCTTCCEEECSS--------C----------CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETT
T ss_pred EEEecchhhcCCCcccCcEEEEec--------C----------CCCHHHHHHHhhccccCCCCceEEEEEecCCC
Confidence 579999999999999999999433 2 2356777899988888655 3 467777644
No 66
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=95.41 E-value=0.0093 Score=56.82 Aligned_cols=28 Identities=29% Similarity=0.243 Sum_probs=21.2
Q ss_pred EeeHHHHHhhcCcCCcccc-ceEEeecCH
Q psy17746 44 SISQAQAWQRTGRAGREAE-GFCYRMYSE 71 (182)
Q Consensus 44 ~isk~~a~qR~graGr~~~-G~c~rL~t~ 71 (182)
+-|+..=.||+||+||.+. |...-+.+.
T Consensus 588 pes~riy~qr~GRTGRqGdpG~s~fflSl 616 (922)
T 1nkt_A 588 HESRRIDNQLRGRSGRQGDPGESRFYLSL 616 (922)
T ss_dssp CSSHHHHHHHHHTSSGGGCCEEEEEEEET
T ss_pred CCCHHHHHHHhcccccCCCCeeEEEEech
Confidence 4567777899999999654 887666654
No 67
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=94.99 E-value=0.0095 Score=48.75 Aligned_cols=56 Identities=20% Similarity=0.098 Sum_probs=32.2
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCcc---ccceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE---AEGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~---~~G~c~rL~t~~~~ 74 (182)
+++||+++..++.++++.+||.... -.+ -+.-.||.||++|. ++-..|+|.++...
T Consensus 168 ~L~st~~~g~Glnl~~a~~VI~~d~--------~wn----------p~~~~Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 168 IVLSVKAGGFGINLTSANRVIHFDR--------WWN----------PAVEDQATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp EEEECCTTCCCCCCTTCSEEEECSC--------CSC----------TTTC--------------CCEEEEEEETTSH
T ss_pred EEEehhhhcCCcCcccCCEEEEECC--------CCC----------hhHHHHHHHhccccCCCCceEEEEEeeCCCH
Confidence 3789999999999999999994433 222 23334666666664 44567999987543
No 68
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=94.42 E-value=0.03 Score=48.67 Aligned_cols=56 Identities=20% Similarity=0.116 Sum_probs=37.1
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc---cceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA---EGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~---~G~c~rL~t~~~~ 74 (182)
+++||++++.++.++++..||-. |+.. +.+.-.||.||++|.+ +..+|+|.++...
T Consensus 397 il~st~~~~~Glnl~~~~~vi~~--------d~~~----------~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ti 455 (500)
T 1z63_A 397 IVLSVKAGGFGINLTSANRVIHF--------DRWW----------NPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 455 (500)
T ss_dssp CEEECCCC-CCCCCTTCSEEEES--------SCCS----------CC---CHHHHTTTTTTTTSCEEEEEEEETTSH
T ss_pred EEEecccccCCCchhhCCEEEEe--------CCCC----------CcchHHHHHHHHHHcCCCCeeEEEEEEeCCCH
Confidence 57899999999999999999843 3322 2334457777777654 4557999886533
No 69
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=91.93 E-value=0.097 Score=47.67 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=40.9
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccc---cceEEeecCHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREA---EGFCYRMYSEED 73 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~---~G~c~rL~t~~~ 73 (182)
+++||.++..++.++++..||- ||+. -+.+.-.||.||++|.+ +...|+|.++..
T Consensus 472 ~L~st~a~g~Glnl~~a~~Vi~--------~d~~----------wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 472 FMLSSKAGGCGLNLIGANRLVM--------FDPD----------WNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp EEEEGGGSCTTCCCTTEEEEEE--------CSCC----------SSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred EEEecccccCCcccccCCEEEE--------ECCC----------CCccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 3689999999999999999983 3433 34566777777777754 456899988653
No 70
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=91.38 E-value=0.085 Score=49.23 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=41.5
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCc---cccceEEeecCHHHH
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGR---EAEGFCYRMYSEEDF 74 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr---~~~G~c~rL~t~~~~ 74 (182)
+++||.++..+|.++.+..|| .||+.. +.+.-.||.||++| .++...|||.++...
T Consensus 628 ~LlSt~agg~GlNL~~a~~VI--------~~D~~w----------np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 628 FLLSTRAGGLGINLMTADTVV--------IFDSDW----------NPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp EEEEHHHHTTTCCCTTCCEEE--------ESSCCS----------CSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred EEEecccccCCCCccccceEE--------EecCCC----------ChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 478999999999999999988 344433 34556666666666 556789999997644
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=89.67 E-value=0.18 Score=48.77 Aligned_cols=44 Identities=11% Similarity=0.201 Sum_probs=34.3
Q ss_pred CEEEecccccCCCCCCceEEEeCCeEEEeEEeCCCCceeeeEEEeeHHHHHhhcCcCCccccc
Q psy17746 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEG 63 (182)
Q Consensus 1 vilaTniaEtsiti~~v~~VID~G~~k~~~~~~~~~~~~l~~~~isk~~a~qR~graGr~~~G 63 (182)
|+++|+++.|++.+|.+. |+ .+| .|.+.....||.||+||..+|
T Consensus 652 ILIvvd~lltGfDiP~l~-tl--------ylD----------kpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 652 LLIVVGMFLTGFDAPTLN-TL--------FVD----------KNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp EEEESSTTSSSCCCTTEE-EE--------EEE----------SCCCHHHHHHHHHTTCCCCCT
T ss_pred EEEEcchHHhCcCccccc-EE--------EEc----------cCCCccceeehhhccCcCCCC
Confidence 589999999999999984 33 122 234567899999999998764
No 72
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=39.36 E-value=59 Score=21.04 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=23.2
Q ss_pred EEEeCCeEEEeEEeCCCCceeeeEEEee
Q psy17746 19 YVIDSGLVKQKTHHPGTGLDVLQVTSIS 46 (182)
Q Consensus 19 ~VID~G~~k~~~~~~~~~~~~l~~~~is 46 (182)
-|+|.|..|.-.||+.++=-.|...+.+
T Consensus 33 gv~e~g~iKIykyde~tNeI~LkKE~~~ 60 (72)
T 3kvp_A 33 GVMEDGYIKIYEYNESRNEVKLKKEYAD 60 (72)
T ss_dssp EEEETTEEEEEEEETTTTEEEEEEEEEC
T ss_pred EEEeCCEEEEEEeCCCCCeEEEEEeecC
Confidence 4789999999999999997777766654
No 73
>4g5a_A Uncharacterized protein; immunoglobulin - like beta-sandwich, structural genomics, JO center for structural genomics, JCSG; 1.69A {Bacteroides thetaiotaomicron}
Probab=27.93 E-value=9.6 Score=25.62 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=16.3
Q ss_pred eeccccceeeeeeeChhhhhhhC
Q psy17746 145 LQTSRCYMKTLSVIDPAWITEMV 167 (182)
Q Consensus 145 v~t~~~yir~vs~i~~~WL~e~~ 167 (182)
+.+...|.-.-+++||+||.-+.
T Consensus 5 v~~k~dw~~qrt~vdpewlkvyv 27 (99)
T 4g5a_A 5 VKTKSDWVIQRTPVDPEWLKVYV 27 (99)
T ss_dssp ECEEEECGGGGSCCCTTSEEEEE
T ss_pred ccchhceEEecccCChHHeEEEE
Confidence 44555666667899999997554
No 74
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=23.79 E-value=16 Score=31.20 Aligned_cols=8 Identities=25% Similarity=0.148 Sum_probs=3.7
Q ss_pred hHHHHHHH
Q psy17746 90 LASTALTL 97 (182)
Q Consensus 90 L~~~vL~l 97 (182)
+++-++.+
T Consensus 455 iee~i~~~ 462 (500)
T 1z63_A 455 LEEKIDQL 462 (500)
T ss_dssp HHHHTHHH
T ss_pred HHHHHHHH
Confidence 44444443
Done!