RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17746
(182 letters)
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 209 bits (534), Expect = 3e-64
Identities = 57/118 (48%), Positives = 80/118 (67%), Gaps = 2/118 (1%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++++TNIAETS+T+ GI YV+D G KQK ++P ++ L V+ IS+A A QR GRAGR
Sbjct: 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 431
Query: 61 AEGFCYRMYSEEDFR-RMNKNTVPEIQRTNLASTALTLLSLEI-NAATFDFMDKPPKE 116
G C+R+Y+EE F+ + + + PEI R+NL+ST L L L I + FDFMD P E
Sbjct: 432 RPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPE 489
Score = 75.0 bits (185), Expect = 2e-16
Identities = 29/146 (19%), Positives = 57/146 (39%), Gaps = 31/146 (21%)
Query: 49 QAWQRTGRAGREAEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSLEINAATFD 108
A++ +C Y ++R ++ I R+ L +LE+N ++
Sbjct: 587 HAFKSDEAYEYGIHKWCRDHYL--NYRSLSA--ADNI-RSQLERLMNRY-NLELNTTDYE 640
Query: 109 FMDKPP------------------------KEIESRQLVSIHPSSSLAGSLPEYILFTEL 144
++ Q V IHPS+ L G E++++ E
Sbjct: 641 SPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVL-GHDAEWVIYNEF 699
Query: 145 LQTSRCYMKTLSVIDPAWITEMVPGY 170
+ TS+ Y++T++ + P W+ E+ P Y
Sbjct: 700 VLTSKNYIRTVTSVRPEWLIEIAPAY 725
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 103 bits (259), Expect = 1e-26
Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 7/106 (6%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHH--PGTGLDVLQVTSISQAQAWQRTGRAG 58
++ T+I+E VID + + + ++ A A QR GR G
Sbjct: 237 FVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIG 295
Query: 59 REAEGFCYRMYS----EEDFRRMNKNTVPEIQRTNLASTALTLLSL 100
R + ++ T ++ N+ + + +L
Sbjct: 296 RNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTL 341
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase,
ATP-binding, reticulum, nucleotidyltransferase,
multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4}
PDB: 2vbc_A 2wzq_A
Length = 618
Score = 102 bits (255), Expect = 7e-26
Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 7/106 (6%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHH--PGTGLDVLQVTSISQAQAWQRTGRAG 58
++ T+I+E VID + + + ++ A A QR GR G
Sbjct: 404 FVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIG 462
Query: 59 REAEGFCYRMYS----EEDFRRMNKNTVPEIQRTNLASTALTLLSL 100
R + ++ T ++ N+ + + +L
Sbjct: 463 RNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGIIPTL 508
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 100 bits (251), Expect = 1e-25
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
++ T+I+E VID K + + +I+ A A QR GR GR
Sbjct: 220 FVITTDISEMGANF-KADRVIDPRK-TIKPILLDGRVSMQGPIAITPASAAQRRGRIGRN 277
Query: 61 AEG--FCYRMYSEEDFRRMNKNTVPEIQ 86
E Y + E +
Sbjct: 278 PEKLGDIYAYSGNVSSDNEGHVSWTEAR 305
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 97.0 bits (241), Expect = 5e-24
Identities = 17/80 (21%), Positives = 23/80 (28%), Gaps = 4/80 (5%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLD---VLQVTSISQAQAWQRTGRA 57
+++AT+ T T VID +T QR GR
Sbjct: 442 VVVATDALMTGYT-GDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRT 500
Query: 58 GREAEGFCYRMYSEEDFRRM 77
GR G + E M
Sbjct: 501 GRGRRGIYRFVTPGERPSGM 520
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 94.5 bits (235), Expect = 3e-23
Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 1 IILATNIAETSITVPGIKYVIDSGL-VKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGR 59
ILAT+IAE + ++ V+D K G + + IS + A QR GR GR
Sbjct: 226 FILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284
Query: 60 EAE--GFCYRMYSEEDFRRMNKNTVPEIQ 86
G Y + E
Sbjct: 285 NPNRDGDSYYYSEPTSENNAHHVCWLEAS 313
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 93.4 bits (232), Expect = 6e-23
Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 9/107 (8%)
Query: 1 IILATNIAETSITVPGIKYVIDSGL-VKQKTHH-PGTGLDVLQVTSISQAQAWQRTGRAG 58
++ T+I+E G VID VK + + + I+ A A QR GR G
Sbjct: 239 FVITTDISEMGANF-GASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVG 297
Query: 59 REAEGFCYRMY-----SEEDFRRMNKNTVPEIQRTNLASTALTLLSL 100
R Y + ED + T +I N+ + L
Sbjct: 298 RNPNQ-VGDEYHYGGATSEDDSNLAHWTEAKIMLDNIHMPNGLVAQL 343
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 90.0 bits (223), Expect = 1e-21
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 1 IILATNIAETSITVPGIKYVIDSGL-VKQKTHHP-GTGLDVLQVTSISQAQAWQRTGRAG 58
++ T+I+E G VID VK + + ++I+ A A QR GR G
Sbjct: 459 FVITTDISEMGANF-GASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVG 517
Query: 59 REAEGFCYRMYSEEDFRRMNKNTV 82
R + +
Sbjct: 518 RNPSQIGDEYHYGGGTSEDDTMLA 541
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase,
mRNA processing, splicing, nucleotide-binding, nucleus,
phosphoprotein, SPLI; 2.10A {Homo sapiens}
Length = 270
Score = 83.8 bits (208), Expect = 3e-20
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 117 IESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMVPGY 170
+ +Q+V IHPSS+L PE++++ EL+ T++ YM+ ++ IDP W+ E P +
Sbjct: 193 LIDQQVVYIHPSSALFNRQPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAF 246
Score = 26.8 bits (60), Expect = 4.1
Identities = 3/16 (18%), Positives = 5/16 (31%), Gaps = 1/16 (6%)
Query: 102 INAATFDFMDKP-PKE 116
F+ + P E
Sbjct: 3 DRGPEFELGTRGSPME 18
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.9 bits (116), Expect = 2e-07
Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 61/158 (38%)
Query: 28 QKTHHPGTGLDVLQVTSISQAQAWQRTGRAGREAEGF----------------------- 64
Q + G G+D+ + TS + W R ++ GF
Sbjct: 1624 QGSQEQGMGMDLYK-TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 65 ---------CYRMY------SEEDFRRMNKNTV------PE--IQRTNLASTALTLLSLE 101
+ +E+ F+ +N+++ + + T ALTL+
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK- 1741
Query: 102 INAATFDFMDKPPKEIESRQLVSIHPSSSLAG-SLPEY 138
A F ++++S+ L+ ++ AG SL EY
Sbjct: 1742 ---AAF-------EDLKSKGLIP--ADATFAGHSLGEY 1767
Score = 33.5 bits (76), Expect = 0.038
Identities = 33/180 (18%), Positives = 53/180 (29%), Gaps = 75/180 (41%)
Query: 7 IAETSITVPGIKYVIDSGLVKQKTH----------HPGTGLDVLQ---------VTS--I 45
+ I+ P I G++ Q H PG L+ VT+ I
Sbjct: 231 LLSIPISCPLI------GVI-QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
Query: 46 SQAQAWQRTGRAGREAE------GF-CYRMYSEEDF----------------------RR 76
++ +W+ + R+A G CY Y
Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 77 MNKNTV-PEIQRTN--LASTALTLLSLEINAATFDFMDKPPKEIESRQLVSIHPSSSLAG 133
+ + V + +TN L + +SL +N A + LV P SL G
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISL-VNGA--------------KNLVVSGPPQSLYG 388
Score = 28.9 bits (64), Expect = 1.1
Identities = 28/203 (13%), Positives = 55/203 (27%), Gaps = 62/203 (30%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQ--KTHHPGTGLDVLQVTSISQAQAWQRTGRAG 58
+ L+ E + VP + I S L +Q K T + A+
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV------- 61
Query: 59 REAE--GFCYRMYSEED---FRRMNKNTVPEIQRTNLASTALTLLSLEINAATFDFMDKP 113
+ G+ + F ++ + E + L +I+A + +
Sbjct: 62 --GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN-------DIHALAAKLLQEN 112
Query: 114 PKEIESRQLV---------------SIHPSSSLA-----------------GSLPEYILF 141
+ + + +S+L G+ +Y F
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY--F 170
Query: 142 TELL---QTSRCYMKTLSVIDPA 161
EL QT + L I +
Sbjct: 171 EELRDLYQTYHVLVGDL--IKFS 191
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 30.9 bits (71), Expect = 0.18
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 9/48 (18%)
Query: 51 WQRTGRAGR---EAEGFCYRMYSEEDFRR----MNKNTVPEIQRTNLA 91
+Q TGRAGR AE Y D + + ++Q
Sbjct: 321 YQETGRAGRDGLPAE--AMLFYDPADMAWLRRCLEEKPQGQLQDIERH 366
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 30.6 bits (69), Expect = 0.30
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 53 RTGRAGREAEGFCYRMYSEEDF-RRMNKNTVPEIQRTNLASTALTLLSLEINAATFDFMD 111
RT R+G+E + E F R + I + S EI + + +
Sbjct: 381 RTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYE-----PSEEIKSEVLEAVT 435
Query: 112 KPPKEIES--RQLVSIHPSSSLAGSLPEYILFTEL 144
+ P++I L+S + S E + E+
Sbjct: 436 EEPEDISDIVISLISSYRSCIKEYRFSERRILPEI 470
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 30.1 bits (67), Expect = 0.36
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 18/73 (24%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
+++AT++ E + VP + V+ V S ++ QR GR GR
Sbjct: 422 VLVATSVGEEGLDVPEVDLVVFYEPVP------------------SAIRSIQRRGRTGRH 463
Query: 61 AEGFCYRMYSEED 73
G + ++
Sbjct: 464 MPGRVIILMAKGT 476
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 29.8 bits (67), Expect = 0.58
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 53 RTGRAGREAEGFCYRMYSEEDF-RRMNKNTVPEIQRTNLASTALTLLSLEINAATFDFMD 111
RT R+G+E + E F R + I + S EI + + +
Sbjct: 432 RTARSGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYE-----PSEEIKSEVLEAVT 486
Query: 112 KPPKEIES--RQLVSIHPSSSLAGSLPEYILFTEL 144
+ P++I L+S + S E + E+
Sbjct: 487 EEPEDISDIVISLISSYRSCIKEYRFSERRILPEI 521
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 29.5 bits (65), Expect = 0.73
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 15/108 (13%)
Query: 1 IILATNIAETSITVPGIKYVIDSGLVK-QKTHHPGTGLDVLQVTSISQ-AQAWQRTGRAG 58
I++AT+ + + I+ +I L+K L+ + + Q A GRAG
Sbjct: 375 ILVATDAIGMGLNLS-IRRIIFYSLIKPSINEKGERELEPITTSQALQIA------GRAG 427
Query: 59 R----EAEGFCYRMYSE--EDFRRMNKNTVPEIQRTNLASTALTLLSL 100
R EG M E + + K V I+ L TA +
Sbjct: 428 RFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMF 475
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 29.2 bits (66), Expect = 0.81
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 5/31 (16%)
Query: 52 QRTGRAGR---EAEGFCYRMYSEEDFRRMNK 79
Q +GRAGR +A+ C Y D R++
Sbjct: 353 QESGRAGRDDMKAD--CILYYGFGDIFRISS 381
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 28.7 bits (64), Expect = 1.0
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 108 DFMDKPPKEIESRQLVSIHPSSSLAGSLP------EYILFTELLQTSRCYMKTLSVIDPA 161
D +++ P ++++ L L L ++ E++ T R Y+K L I
Sbjct: 8 DGVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVIN-EIMSTERHYIKHLKDICEG 66
Query: 162 WITEMV 167
++ +
Sbjct: 67 YLKQCR 72
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 28.3 bits (64), Expect = 1.3
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 26/70 (37%)
Query: 36 GLDVLQVTSI------SQAQAWQ----------RTGRAGRE--AEGFCYRMYSEEDFRRM 77
G+DV QV + RTGR GR + F ++ ++ + M
Sbjct: 420 GIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF---VHDKKSWEEM 476
Query: 78 NKNTVPEIQR 87
N IQ
Sbjct: 477 N-----AIQE 481
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 2.2
Identities = 28/164 (17%), Positives = 44/164 (26%), Gaps = 52/164 (31%)
Query: 66 YRMYSEE------DFRRMNKNTVPEIQ-----RTNLAS--------------------TA 94
RMY E+ D + K V +Q R L
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168
Query: 95 LTLLSLEINAATFDF---------MDKPPKEIESRQLVSIH--------PSSSLAGSLPE 137
LS ++ DF + P +E Q + S L
Sbjct: 169 DVCLSYKVQCK-MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 138 YILFTEL--LQTSRCYMKTLSVIDPAWITEMVPGYAAQHRI-VT 178
+ + EL L S+ Y L V+ + + +I +T
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA
recognition motif, ATP-BIND helicase,
nucleotide-binding; 2.80A {Thermus thermophilus}
Length = 300
Score = 27.4 bits (61), Expect = 3.1
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Query: 53 RTGRAGREAEGFCYRMYSEEDFRRMNKNTVPEIQRT 88
RTGRAGR G +Y + R + ++R
Sbjct: 118 RTGRAGR--GGRVVLLYGPRERRDVE-----ALERA 146
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer,
ATP-binding, helicase, hydrolase, nucleotide-binding;
2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Length = 212
Score = 26.9 bits (60), Expect = 3.8
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Query: 53 RTGRAGREAEGFCYRMYSEEDFRRMNKNTVPEIQRT 88
RTGRAGR G +Y + R + ++R
Sbjct: 121 RTGRAGR--GGRVVLLYGPRERRDVE-----ALERA 149
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural
genomics, the center for structural genomics of I
diseases, csgid; 1.87A {Listeria monocytogenes}
Length = 249
Score = 26.3 bits (58), Expect = 5.4
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 66 YRMYSEEDFRRMNK 79
YR+YSE+D ++ +
Sbjct: 39 YRIYSEKDVDKLQQ 52
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 26.5 bits (58), Expect = 6.5
Identities = 15/129 (11%), Positives = 38/129 (29%), Gaps = 2/129 (1%)
Query: 38 DVLQVTSISQAQAWQRTGRAGREAEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTL 97
D+ V + A+ + E+ +++ + +
Sbjct: 101 DLFDVQDFGKVIYTLSALSWTPIAQNRGIMPFPTEEESVGDEDIYSGLSDQIDDTVEEDE 160
Query: 98 LSLEINAATFDFMDKPPKEIESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSV 157
+ D+ +++ + VS+ P + + E+ QT Y TL
Sbjct: 161 DLYDCVENEEAEGDEIYEDLMRSEPVSMPPKMTEYDKRCCCL--REIQQTEEKYTDTLGS 218
Query: 158 IDPAWITEM 166
I ++ +
Sbjct: 219 IQQHFLKPL 227
>3hh0_A Transcriptional regulator, MERR family; protein structure
initiative II(PSI II), NYSGXRC, 11183J, structural
genomics; 2.67A {Bacillus cereus atcc 14579}
Length = 146
Score = 25.8 bits (57), Expect = 6.9
Identities = 3/14 (21%), Positives = 10/14 (71%)
Query: 66 YRMYSEEDFRRMNK 79
+R+Y+++D + +
Sbjct: 40 HRLYTKDDLYVLQQ 53
>1r8d_A Transcription activator MTAN; protein-DNA complex,
transcription/DNA complex; 2.70A {Bacillus subtilis}
SCOP: a.6.1.3 PDB: 1jbg_A
Length = 109
Score = 25.3 bits (56), Expect = 7.2
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 66 YRMYSEEDFRRMNK 79
YR+YS+ D R+ +
Sbjct: 38 YRLYSDADLERLQQ 51
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 26.1 bits (57), Expect = 7.3
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 111 DKPPKEIESRQLVSIHPSSSLAGSLPEYILFTELLQTSRCYMKTLSVIDPAWITEMV 167
D P S + S + ++ E+L T R Y+K L I ++ +
Sbjct: 94 DDAPLAGNSGAEDGGAEAQSSKDQMRTNVIN-EILSTERDYIKHLRDICEGYVRQCR 149
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 26.0 bits (57), Expect = 8.9
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 56 RAGREAEGFCYRMYSEEDFRRMNKNTVPEIQRTNLASTALTLLSL 100
++ A + R + + + K +P + TN A+ +
Sbjct: 255 KSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEV 299
>2kwa_A Kinase A inhibitor; bacterial signal transduction, KIPI, histidine
kinase inhibi bacillus subtilis, transferase inhibitor;
NMR {Bacillus subtilis}
Length = 101
Score = 24.7 bits (54), Expect = 10.0
Identities = 2/29 (6%), Positives = 7/29 (24%)
Query: 143 ELLQTSRCYMKTLSVIDPAWITEMVPGYA 171
++ + E +P +
Sbjct: 28 QVNGIVHAAAAYIEEQPFPGFIECIPAFT 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.376
Gapped
Lambda K H
0.267 0.0637 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,718,473
Number of extensions: 147842
Number of successful extensions: 324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 50
Length of query: 182
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 94
Effective length of database: 4,244,745
Effective search space: 399006030
Effective search space used: 399006030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)