RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17746
         (182 letters)



>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
           virus [TaxId: 11089]}
          Length = 299

 Score = 96.2 bits (239), Expect = 6e-25
 Identities = 27/123 (21%), Positives = 41/123 (33%), Gaps = 12/123 (9%)

Query: 1   IILATNIAETSITVPGIKYVIDSGL-VKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGR 59
            ILAT+IAE    +  ++ V+D     K      G  + +     IS + A QR GR GR
Sbjct: 85  FILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 143

Query: 60  EAEG-FCYRMYSEEDFRRMNKNTVPEIQRTN----LASTALTLLSLEIN-AATFDFMDKP 113
                     YSE      ++N    +        L +  +    +              
Sbjct: 144 NPNRDGDSYYYSEP----TSENNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVS 199

Query: 114 PKE 116
           P E
Sbjct: 200 PGE 202


>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
           type 2 [TaxId: 11060]}
          Length = 305

 Score = 64.2 bits (155), Expect = 3e-13
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 2   ILATNIAETSITVPGIKYVIDSGLVKQKTHH--PGTGLDVLQVTSISQAQAWQRTGRAGR 59
           ++ T+I+E        + VID     +          + +     ++ + A QR GR GR
Sbjct: 228 VVTTDISEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGR 286

Query: 60  EAEGFCYRM-YSEEDF 74
             +    +  Y  E  
Sbjct: 287 NPKNENDQYIYMGEPL 302


>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
           PF2015 {Pyrococcus furiosus [TaxId: 2261]}
          Length = 286

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 18/73 (24%)

Query: 1   IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
           +++AT++ E  + VP +  V+    V                   S  ++ QR GR GR 
Sbjct: 222 VLVATSVGEEGLDVPEVDLVVFYEPVP------------------SAIRSIQRRGRTGRH 263

Query: 61  AEGFCYRMYSEED 73
             G    + ++  
Sbjct: 264 MPGRVIILMAKGT 276


>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
           fulgidus [TaxId: 2234]}
          Length = 201

 Score = 32.6 bits (73), Expect = 0.014
 Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 1   IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
           +++AT      + +P  + ++ S              +  Q+          R GR G +
Sbjct: 123 VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAG--------RAGRPGMD 174

Query: 61  AEGFCYRMYSEED 73
             G    +  + D
Sbjct: 175 ERGEAIIIVGKRD 187


>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
           nucleotide-binding domains {Bacillus subtilis [TaxId:
           1423]}
          Length = 175

 Score = 30.2 bits (68), Expect = 0.087
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 1   IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVT-SISQAQAWQRTGRAGR 59
           + +ATN+A     +   + V + G           GL V+      S+    Q  GR+GR
Sbjct: 85  VTIATNMAGRGTDIKLGEGVKELG-----------GLAVVGTERHESRRIDNQLRGRSGR 133

Query: 60  EA-EGFCYRMYSEED 73
           +   G      S ED
Sbjct: 134 QGDPGITQFYLSMED 148


>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 155

 Score = 29.5 bits (65), Expect = 0.12
 Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 23/92 (25%)

Query: 1   IILATNIAETSITVPGIKYVIDSGLVKQKTHHPGTGLDVLQVTSISQAQAWQRTGRAGRE 60
           I++AT++    I V  +  VI+  L +                  S      RTGRAG+ 
Sbjct: 81  ILIATDVMSRGIDVNDLNCVINYHLPQ---------------NPESYMHRIGRTGRAGK- 124

Query: 61  AEGFCYRMYSEEDFRRMN------KNTVPEIQ 86
            +G    + +  +++++       K  + +++
Sbjct: 125 -KGKAISIINRREYKKLRYIERAMKLKIKKLK 155


>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
           (HCV), different isolates [TaxId: 11103]}
          Length = 138

 Score = 26.2 bits (57), Expect = 1.7
 Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)

Query: 51  WQRTGRAGREAEGFCYRMYSEED 73
            QR GR GR   G  YR  +  +
Sbjct: 116 TQRRGRTGRGKPG-IYRFVAPGE 137


>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein
           TRIO {Human (Homo sapiens) [TaxId: 9606]}
          Length = 184

 Score = 24.3 bits (52), Expect = 8.6
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 137 EYILFTELLQTSRCYMKTLSVIDPAWITEM 166
           E+I+  EL+QT + Y++ L      ++ EM
Sbjct: 5   EFIMA-ELIQTEKAYVRDLRECMDTYLWEM 33


>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
           C virus (HCV), different isolates [TaxId: 11103]}
          Length = 299

 Score = 24.5 bits (53), Expect = 9.2
 Identities = 7/15 (46%), Positives = 7/15 (46%)

Query: 52  QRTGRAGREAEGFCY 66
           QR GR GR   G   
Sbjct: 135 QRRGRTGRGKPGIYR 149


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0495    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 643,952
Number of extensions: 26222
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 14
Length of query: 182
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,309,196
Effective search space: 133537992
Effective search space used: 133537992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)