BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1775
(304 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4
Length = 639
Score = 232 bits (591), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 110/143 (76%), Positives = 131/143 (91%)
Query: 140 SPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDK 199
SPSPEPIY+S+GKR+NTRE+RTRKKLEEERH+LI +M +NP+FKPP DYKPP +V+DK
Sbjct: 80 SPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDK 139
Query: 200 VMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGE 259
VMIPQDE+P+INFVGLLIGPRGNTLK++EK+ AKI+IRGKGSVKEGKVGRKDGQ LPGE
Sbjct: 140 VMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGE 199
Query: 260 NEPLHAYVTAHNPENVKKAVDRL 282
+EPLHA VTA+ ENVKKAV+++
Sbjct: 200 DEPLHALVTANTMENVKKAVEQI 222
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 12/87 (13%)
Query: 34 GTLRENEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRPGMGGPP 93
GTLRE++ + W + +ITN+T+C+ CGGAGHIA DC+ +RPG
Sbjct: 252 GTLREDDNRIL--------RPWQSSETRSITNTTVCTKCGGAGHIASDCKFQRPG----D 299
Query: 94 ANTHRNRAKIDEEYMSLMAELGEGPPP 120
+ +++A++D+EY+SLMAELGE P P
Sbjct: 300 PQSAQDKARMDKEYLSLMAELGEAPVP 326
>sp|Q64213|SF01_MOUSE Splicing factor 1 OS=Mus musculus GN=Sf1 PE=1 SV=6
Length = 653
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 110/143 (76%), Positives = 130/143 (90%)
Query: 140 SPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDK 199
SPSPEPIY+S+GKR+NTRE+RTRKKLEEERH LI +M +NP+FKPP DYKPP +V+DK
Sbjct: 80 SPSPEPIYNSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPATRVSDK 139
Query: 200 VMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGE 259
VMIPQDE+P+INFVGLLIGPRGNTLK++EK+ AKI+IRGKGSVKEGKVGRKDGQ LPGE
Sbjct: 140 VMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGE 199
Query: 260 NEPLHAYVTAHNPENVKKAVDRL 282
+EPLHA VTA+ ENVKKAV+++
Sbjct: 200 DEPLHALVTANTMENVKKAVEQI 222
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 12/87 (13%)
Query: 34 GTLRENEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRPGMGGPP 93
GTLRE++ + W + +ITN+T+C+ CGGAGHIA DC+ +RPG
Sbjct: 252 GTLREDDN--------RILRPWQSSETRSITNTTVCTKCGGAGHIASDCKFQRPG----D 299
Query: 94 ANTHRNRAKIDEEYMSLMAELGEGPPP 120
+ +++A++D+EY+SLMAELGE P P
Sbjct: 300 PQSAQDKARMDKEYLSLMAELGEAPVP 326
>sp|Q8NIW7|BBP_NEUCR Branchpoint-bridging protein OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=bpb-1 PE=3 SV=1
Length = 607
Score = 158 bits (399), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 81/142 (57%), Positives = 99/142 (69%), Gaps = 2/142 (1%)
Query: 137 GSLSPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKV 196
G SPSP P Y + G+R+NTREYR RKKLE+ERH LI+K K P + PP DY+ P K
Sbjct: 138 GDRSPSPAPQYDNHGRRVNTREYRYRKKLEDERHKLIEKAMKTIPNYHPPSDYRRPT-KT 196
Query: 197 NDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPL 256
+KV +P +++P+INF+GLLIGPRGNTLK ME ++GAKI IRGKGSVKEGK GR D
Sbjct: 197 QEKVYVPVNDYPEINFIGLLIGPRGNTLKKMETESGAKIAIRGKGSVKEGK-GRSDAAHS 255
Query: 257 PGENEPLHAYVTAHNPENVKKA 278
+ E LH + A E V KA
Sbjct: 256 SNQEEDLHCLIMADTEEKVNKA 277
Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 34 GTLRENEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRPGMG--- 90
GTLR++E C NCG H+ + CP+K N T + +C CG AGH+ARDC +++ G
Sbjct: 311 GTLRDDENQACQNCGQIGHRKYDCPEKQNYTANIICRVCGNAGHMARDCPDRQRGASWRN 370
Query: 91 -GPPANTHRNRA-------KIDEEYMSLMAELG 115
GP A R +D EY LM ELG
Sbjct: 371 DGPGAGRTAGRIGSSGGGDAVDREYEQLMQELG 403
>sp|Q4WXV6|BBP_ASPFU Branchpoint-bridging protein OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bbp PE=3
SV=1
Length = 566
Score = 154 bits (388), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 99/144 (68%), Gaps = 2/144 (1%)
Query: 135 TSGSLSPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVI 194
G SPSP P Y + G+R+NTREYR RK+LE+ERH L++K K P + PP DY+ P
Sbjct: 121 ADGDRSPSPPPQYDNFGRRVNTREYRYRKRLEDERHKLVEKAMKTIPNYHPPSDYRRPT- 179
Query: 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQ 254
K +KV +P +++P+INF+GLLIGPRGNTLK ME ++GAKI IRGKGSVKEGK GR D
Sbjct: 180 KTQEKVYVPVNDYPEINFIGLLIGPRGNTLKKMEAESGAKIAIRGKGSVKEGK-GRSDAA 238
Query: 255 PLPGENEPLHAYVTAHNPENVKKA 278
+ E LH + A E V KA
Sbjct: 239 HASNQEEDLHCLIMADTEEKVNKA 262
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 34 GTLRENEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRPGMGGPP 93
GTLR++E C NCG H+ + CP++ N T + +C CG AGH+ARDC +++ G
Sbjct: 296 GTLRDDENQACQNCGQIGHRKYDCPEQRNFTANIICRVCGNAGHMARDCPDRQRGSDWRN 355
Query: 94 ANTHRNRAK-------IDEEYMSLMAELGEGPP 119
+ + +D E LM EL G P
Sbjct: 356 GGGYGGGRRAIGQGDAVDREMEQLMQELSGGAP 388
>sp|Q750X2|BBP_ASHGO Branchpoint-bridging protein OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BBP PE=3 SV=2
Length = 507
Score = 144 bits (364), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 100/152 (65%), Gaps = 1/152 (0%)
Query: 135 TSGSLSPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVI 194
TS S SP P+Y S GKR NTRE+R RKKLEEERH L++ K+ P F P DY+ P
Sbjct: 89 TSRYRSLSPPPVYDSQGKRTNTREHRYRKKLEEERHRLVEIALKMIPHFIAPDDYRRPS- 147
Query: 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQ 254
K DK IP +++P+INFVGLL+GPRGNTLK +++ +G KI+IRG+GSVKEGK +
Sbjct: 148 KFQDKYYIPINDYPEINFVGLLLGPRGNTLKQLQQQSGCKIVIRGRGSVKEGKAATDLPK 207
Query: 255 PLPGENEPLHAYVTAHNPENVKKAVDRLVCLV 286
NEPLH ++A E + ++ + ++
Sbjct: 208 GAMNMNEPLHCVISADTEEKIPLGINAVESII 239
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 34 GTLRENEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRPGMGGPP 93
GTLRE+ P C CG HK W C P+++ + +C C GH ARDC P
Sbjct: 265 GTLREDNRP-CPLCGEQGHKKWECSSNPSLSMTVICQRCNQPGHAARDCTS--------P 315
Query: 94 ANTHRNRAKIDEEYMSLMAELGEGPPP 120
N R E+ + PPP
Sbjct: 316 LNEFGKRTSDGPEFRETKKLQQDAPPP 342
>sp|O74555|BBP_SCHPO Branchpoint-bridging protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bpb1 PE=1 SV=1
Length = 587
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 104/157 (66%), Gaps = 5/157 (3%)
Query: 140 SPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDK 199
SPSP P Y + G+R+NTRE R +KKLE+ERH +I++ K+ P F+ P DY+ P K +K
Sbjct: 131 SPSPPPQYDNHGRRLNTREIRYKKKLEDERHRIIERAMKMVPGFRAPSDYRRPA-KTQEK 189
Query: 200 VMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGE 259
V +P ++P+INF+GLLIGPRG+TLK ME +GAKI IRGKGSVKEGK GR D
Sbjct: 190 VYVPVKDYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSVKEGK-GRSDPSVRGNM 248
Query: 260 NEPLHAYVTAHNPENVKKA---VDRLVCLVSARPRAR 293
E LH VTA + + + A +D ++ ++ P +
Sbjct: 249 EEDLHCLVTADSEDKINHAIKLIDNVIQTAASVPEGQ 285
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 11/86 (12%)
Query: 34 GTLRENEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDC--REKRPGMGG 91
GTLR++E C NCG H+ + CP++ N T + +C CG GHIARDC R+++P M
Sbjct: 301 GTLRDDENQVCQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCPVRDQQPPMAD 360
Query: 92 PPANTHRNRAKIDEEYMSLMAELGEG 117
+ D EY SLM ELG G
Sbjct: 361 ---------STADREYQSLMQELGGG 377
>sp|Q54BM5|BBP_DICDI Branchpoint-bridging protein OS=Dictyostelium discoideum GN=sf1
PE=3 SV=1
Length = 501
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 95/139 (68%), Gaps = 4/139 (2%)
Query: 140 SPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDK 199
SPSP P Y ++GKR NTRE R ++KL++ERH L+ ++NP +KPP DY+PP K K
Sbjct: 123 SPSPPPTYDNNGKRSNTREQRIKEKLQKERHQLVVTAQQINPTYKPPSDYQPPNEKKTRK 182
Query: 200 VMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGE 259
+ IP HP+ NF+GL+IGPRGNT K MEK++GAKI IRGKGS ++GK + Q E
Sbjct: 183 IYIPIKNHPEYNFIGLIIGPRGNTQKRMEKESGAKIAIRGKGSSRDGKPTKLQFQ----E 238
Query: 260 NEPLHAYVTAHNPENVKKA 278
N+ LH +TA + + KA
Sbjct: 239 NDELHVLLTADTVDQLDKA 257
>sp|P0CO44|BBP_CRYNJ Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=BBP PE=3 SV=1
Length = 546
Score = 137 bits (346), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 96/144 (66%), Gaps = 3/144 (2%)
Query: 137 GSLSPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPV-IK 195
G SPSP P Y + G+R NTRE R RKKLE+ER LI + K +P F+PP D++ +
Sbjct: 186 GQRSPSPTPQYDAYGRRTNTRELRYRKKLEDERTRLIDRAVKSDPNFRPPVDFQHKRGSR 245
Query: 196 VNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQP 255
DKV IP E P+INF GLL+GPRGN+LK ME+++GAKI IRGKGSVKEGK GR P
Sbjct: 246 PQDKVYIPVKEFPEINFFGLLVGPRGNSLKKMERESGAKISIRGKGSVKEGK-GRAGNFP 304
Query: 256 LPGENEPLHAYVTAHNPENVKKAV 279
E+E LH +TA + VK V
Sbjct: 305 QDEEDE-LHCLITADDESKVKTCV 327
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 34 GTLRENEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRPGMGGPP 93
GTLR++E C NCG H+ W CP + + + +C CGGAGH+ARDCR + G P
Sbjct: 360 GTLRDDENQLCQNCGEKGHRRWECPQQRVYSANVICRICGGAGHMARDCRGR-----GDP 414
Query: 94 ANTHRNRAKIDEEYMSLMAELGEG 117
+ T + D EY +LMAELGEG
Sbjct: 415 SLTQNKQTAFDSEYTALMAELGEG 438
>sp|P0CO45|BBP_CRYNB Branchpoint-bridging protein OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=BBP PE=3 SV=1
Length = 546
Score = 137 bits (346), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 78/144 (54%), Positives = 96/144 (66%), Gaps = 3/144 (2%)
Query: 137 GSLSPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPV-IK 195
G SPSP P Y + G+R NTRE R RKKLE+ER LI + K +P F+PP D++ +
Sbjct: 186 GQRSPSPTPQYDAYGRRTNTRELRYRKKLEDERTRLIDRAVKSDPNFRPPVDFQHKRGSR 245
Query: 196 VNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQP 255
DKV IP E P+INF GLL+GPRGN+LK ME+++GAKI IRGKGSVKEGK GR P
Sbjct: 246 PQDKVYIPVKEFPEINFFGLLVGPRGNSLKKMERESGAKISIRGKGSVKEGK-GRAGNFP 304
Query: 256 LPGENEPLHAYVTAHNPENVKKAV 279
E+E LH +TA + VK V
Sbjct: 305 QDEEDE-LHCLITADDESKVKTCV 327
Score = 85.5 bits (210), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 5/84 (5%)
Query: 34 GTLRENEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRPGMGGPP 93
GTLR++E C NCG H+ W CP + + + +C CGGAGH+ARDCR + G P
Sbjct: 360 GTLRDDENQLCQNCGEKGHRRWECPQQRVYSANVICRICGGAGHMARDCRGR-----GDP 414
Query: 94 ANTHRNRAKIDEEYMSLMAELGEG 117
+ T + D EY +LMAELGEG
Sbjct: 415 SLTQNKQTAFDSEYTALMAELGEG 438
>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis (strain 521 / FGSC
9021) GN=BBP PE=3 SV=1
Length = 625
Score = 135 bits (340), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 96/144 (66%), Gaps = 10/144 (6%)
Query: 140 SPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVN-- 197
SPSP P Y + G+R NTRE R RKKLE+ER L+ + K++P F+PP DY IK N
Sbjct: 190 SPSPPPTYDNQGRRTNTREVRYRKKLEDERVALVDRQLKLDPNFRPPSDYH--AIKRNQR 247
Query: 198 --DKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQP 255
+KV +P E P+I F GLL+GPRGNTLK+ME+ +GAKI IRGKGSVK GK G+ D
Sbjct: 248 PTEKVYLPIKEFPEIKFFGLLVGPRGNTLKTMERQSGAKISIRGKGSVKTGK-GKMDADE 306
Query: 256 LPGENEPLHAYVTAHNPENVKKAV 279
+ E +H VTA + +VKK +
Sbjct: 307 ---DEEEMHCVVTADDEASVKKCI 327
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 34 GTLRENEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRPGM--GG 91
GTLR++E C NCG H+++ CP++ N T +C CGG GH+ARDC + R G G
Sbjct: 360 GTLRDDENQLCKNCGNKGHRAFECPEQRNWTAHIICHRCGGQGHLARDCTQGRAGAFNGA 419
Query: 92 PPANTHRNRAKIDEEYMSLMAELGE 116
PP + D EY +LMAELGE
Sbjct: 420 PPGAAGTGNRQFDSEYANLMAELGE 444
>sp|Q12186|BBP_YEAST Branchpoint-bridging protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MSL5 PE=1 SV=1
Length = 476
Score = 134 bits (337), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Query: 140 SPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDK 199
SPSP P+Y + GKR NTRE R RKKLE+ER L++ K P F PP DYK P K DK
Sbjct: 93 SPSPPPVYDAQGKRTNTREQRYRKKLEDERIKLVEIALKTIPYFVPPDDYKRPT-KFQDK 151
Query: 200 VMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGE 259
IP D++PD+NFVGLL+GPRG TL+ +++D+ KI IRG+GSVKEGK
Sbjct: 152 YYIPVDQYPDVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGKNASDLPPGAMNF 211
Query: 260 NEPLHAYVTAHNPENVKKAV 279
+PLH + A + + ++K +
Sbjct: 212 EDPLHCLIIADSEDKIQKGI 231
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 34 GTLRENEGPRCTNCGASDHKSWLCPDK--PNITNSTLCSSCGGAGHIARDCREKRPGMGG 91
GTLRE+ P C CG DHK + CP++ PNI +C CG GH +RDC M
Sbjct: 264 GTLREDNRP-CPICGLKDHKRYDCPNRKIPNI-QGIVCKICGQTGHFSRDCNSSSQRMSR 321
Query: 92 PPAN-THRNRAKIDEEYMSLMAELGEGPPPDKRQRDNDSYR---KNNTSGSLSPSPEP 145
N T N A I + + P + + DN+S K S +PSP P
Sbjct: 322 FDRNATVNNSAPIQSNDVHYNSNTHPIQAPKRSRYDNNSTEPPLKFPASSRYAPSPSP 379
>sp|Q6C187|BBP_YARLI Branchpoint-bridging protein OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=BBP PE=3 SV=1
Length = 605
Score = 130 bits (328), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Query: 140 SPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDK 199
SPSP P Y S GKR NTR+ R ++LEEERH LI++ ++ P ++PP DY P K +
Sbjct: 124 SPSPPPQYDSMGKRTNTRDARYTRQLEEERHRLIERAQRLIPNYRPPVDYHKPA-KTQEV 182
Query: 200 VMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGE 259
V IP +E+PDINF+G L+G RG TLK ME+++GAKI IRG+GSVK+GK GR D
Sbjct: 183 VYIPVNEYPDINFIGQLLGARGKTLKKMEQESGAKICIRGRGSVKQGK-GRTDIPFQSTA 241
Query: 260 NEPLHAYVTAHNPENVKKAVDRLVCLV 286
+ LH + + + E + +AV + ++
Sbjct: 242 EDDLHCLIISEDEEKIARAVQLVQQVI 268
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 18/130 (13%)
Query: 34 GTLRENE----GPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRPGM 89
GTLR++E P+ ++ D ++ + N +S +C CG GH ARDC EK
Sbjct: 294 GTLRDDENYGGAPQSSSGDEMDDRNKR---RNNFMSSIVCHICGSKGHFARDCLEK---- 346
Query: 90 GGPPANTHRNRAKIDEEYMSLMAEL-GEGPPPDKRQRDNDSYRKNNTSGSLSPSPEPIYS 148
G A T N D EY +LM EL GEG Q+ S +N + ++S P +
Sbjct: 347 -GTNAGTSEN---ADREYDALMRELQGEGVIDTASQQ--QSIAQNPNTNNVSKLPPAVTG 400
Query: 149 SDGKRMNTRE 158
S+ +N R+
Sbjct: 401 SNAAPINMRK 410
>sp|Q6FW77|BBP_CANGA Branchpoint-bridging protein OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BBP
PE=3 SV=1
Length = 465
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 89/140 (63%), Gaps = 1/140 (0%)
Query: 140 SPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDK 199
SPSP P+Y ++GKR+NTRE +KKL ER L++ + K+ P + P DYK P +K
Sbjct: 79 SPSPPPVYDAEGKRINTREQLYKKKLMNERFKLVEVVSKLIPGYSAPKDYKRPTT-FQEK 137
Query: 200 VMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGE 259
IP ++P INFVGLL+GPRG TL+ M++D+G KI IRG+GSVKEGK
Sbjct: 138 YYIPVSQYPQINFVGLLLGPRGKTLRKMQEDSGCKIAIRGRGSVKEGKTSSDLPPGAMDF 197
Query: 260 NEPLHAYVTAHNPENVKKAV 279
++PLH + A N E ++ +
Sbjct: 198 SDPLHCLIIADNEEKIENGI 217
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 34 GTLRENEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDC 82
GTLRE+ P C CG HK + CP + +C C GH RDC
Sbjct: 250 GTLREDNRP-CATCGQQGHKKYECPHRETFAMKIICRRCNQPGHTIRDC 297
>sp|Q5AED9|BBP_CANAL Branchpoint-bridging protein OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=BBP PE=3 SV=1
Length = 455
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/162 (41%), Positives = 98/162 (60%), Gaps = 10/162 (6%)
Query: 120 PDKRQRDNDSYRKNNTSGSLSPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKV 179
P + + D Y+++ PSP P Y +G R NTRE R + LE+ERH+L++
Sbjct: 80 PSAKVDETDHYKRD-------PSPPPKYDKNGNRTNTRERRVTEALEKERHELVELAASS 132
Query: 180 NPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRG 239
+ P +Y+ P V +++ +P ++PDINFVG LIGPRGNTLK +++D+GA++ IRG
Sbjct: 133 IKNYMIPSNYRRPSRTV-ERLYVPVKDYPDINFVGFLIGPRGNTLKKLQEDSGARLQIRG 191
Query: 240 KGSVKEGKVGRKDGQPLPGEN--EPLHAYVTAHNPENVKKAV 279
KGSVKEGK G G + + LH +TA +P + KAV
Sbjct: 192 KGSVKEGKSSDGFGSSQTGTDIQDDLHVLITADSPLKISKAV 233
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Query: 68 LCSSCGGAGHIARDCRE---KRP 87
+C CG GHIARDC++ KRP
Sbjct: 293 VCKICGNIGHIARDCKQNNGKRP 315
>sp|Q6BSP4|BBP_DEBHA Branchpoint-bridging protein OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=BBP PE=3 SV=2
Length = 518
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 80/115 (69%), Gaps = 1/115 (0%)
Query: 133 NNTSGSLSPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPP 192
NN + PSP P Y + G R NTRE RT+ LE+ERH L++ + P DY+ P
Sbjct: 100 NNPNYEREPSPPPKYDAAGNRSNTREARTKLALEKERHYLVEVAAGSIKNYMSPIDYRKP 159
Query: 193 VIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGK 247
V K +K+ IP ++PDINFVGLL+GPRGNTL+ +++D+GA++ IRGKGSVK+GK
Sbjct: 160 V-KTYEKIYIPVKDYPDINFVGLLLGPRGNTLRQLQEDSGARLAIRGKGSVKDGK 213
Score = 31.6 bits (70), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 68 LCSSCGGAGHIARDCR 83
+C SCG GH ARDC+
Sbjct: 320 VCKSCGKVGHFARDCK 335
>sp|O01367|HOW_DROME Protein held out wings OS=Drosophila melanogaster GN=how PE=1 SV=1
Length = 405
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 74/117 (63%), Gaps = 9/117 (7%)
Query: 165 LEEERHDLIQKMFKVNPEFKPP---PDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRG 221
L+EE + +F++N K P P+ + V+ +N+KV +P EHPD NFVG ++GPRG
Sbjct: 103 LDEEIARVRASLFQINGVKKEPLTLPEPEGSVVTMNEKVYVPVREHPDFNFVGRILGPRG 162
Query: 222 NTLKSMEKDTGAKIIIRGKGSVKEGKVGRKD---GQP-LPGENEPLHAYVTAHNPEN 274
T K +E++TG KI++RGKGS+++ K ++D G+P ++ LH +T + EN
Sbjct: 163 MTAKQLEQETGCKIMVRGKGSMRDKK--KEDANRGKPNWEHLSDDLHVLITVEDTEN 217
>sp|Q32NN2|QKIA_XENLA Protein quaking-A OS=Xenopus laevis GN=qki-a PE=1 SV=2
Length = 341
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 69/107 (64%), Gaps = 7/107 (6%)
Query: 187 PDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEG 246
PD P++++ +K+ +P E+PD NFVG ++GPRG T K +E +TG KI++RGKGS+++
Sbjct: 74 PDGIGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDK 133
Query: 247 KVGRKD-GQP-LPGENEPLHAYVTAHNPEN-----VKKAVDRLVCLV 286
K ++ G+P NE LH +T + +N +K+AV+ + L+
Sbjct: 134 KKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAELKLKRAVEEVKKLL 180
>sp|Q91XU1|QKI_RAT Protein quaking OS=Rattus norvegicus GN=Qki PE=1 SV=2
Length = 341
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 69/107 (64%), Gaps = 7/107 (6%)
Query: 187 PDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEG 246
PD P++++ +K+ +P E+PD NFVG ++GPRG T K +E +TG KI++RGKGS+++
Sbjct: 73 PDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDK 132
Query: 247 KVGRKD-GQP-LPGENEPLHAYVTAHNPEN-----VKKAVDRLVCLV 286
K ++ G+P NE LH +T + +N +K+AV+ + L+
Sbjct: 133 KKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLL 179
>sp|Q5W9D5|QKI_PIG Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1
Length = 341
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 69/107 (64%), Gaps = 7/107 (6%)
Query: 187 PDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEG 246
PD P++++ +K+ +P E+PD NFVG ++GPRG T K +E +TG KI++RGKGS+++
Sbjct: 73 PDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDK 132
Query: 247 KVGRKD-GQP-LPGENEPLHAYVTAHNPEN-----VKKAVDRLVCLV 286
K ++ G+P NE LH +T + +N +K+AV+ + L+
Sbjct: 133 KKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLL 179
>sp|Q9QYS9|QKI_MOUSE Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1
Length = 341
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 69/107 (64%), Gaps = 7/107 (6%)
Query: 187 PDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEG 246
PD P++++ +K+ +P E+PD NFVG ++GPRG T K +E +TG KI++RGKGS+++
Sbjct: 73 PDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDK 132
Query: 247 KVGRKD-GQP-LPGENEPLHAYVTAHNPEN-----VKKAVDRLVCLV 286
K ++ G+P NE LH +T + +N +K+AV+ + L+
Sbjct: 133 KKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLL 179
>sp|Q96PU8|QKI_HUMAN Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1
Length = 341
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 69/107 (64%), Gaps = 7/107 (6%)
Query: 187 PDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEG 246
PD P++++ +K+ +P E+PD NFVG ++GPRG T K +E +TG KI++RGKGS+++
Sbjct: 73 PDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDK 132
Query: 247 KVGRKD-GQP-LPGENEPLHAYVTAHNPEN-----VKKAVDRLVCLV 286
K ++ G+P NE LH +T + +N +K+AV+ + L+
Sbjct: 133 KKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLL 179
>sp|Q5W9D6|QKI_HORSE Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1
Length = 341
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 69/107 (64%), Gaps = 7/107 (6%)
Query: 187 PDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEG 246
PD P++++ +K+ +P E+PD NFVG ++GPRG T K +E +TG KI++RGKGS+++
Sbjct: 73 PDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDK 132
Query: 247 KVGRKD-GQP-LPGENEPLHAYVTAHNPEN-----VKKAVDRLVCLV 286
K ++ G+P NE LH +T + +N +K+AV+ + L+
Sbjct: 133 KKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLL 179
>sp|Q7JJZ8|QKI_FELCA Protein quaking OS=Felis catus GN=QKI PE=2 SV=1
Length = 341
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 69/107 (64%), Gaps = 7/107 (6%)
Query: 187 PDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEG 246
PD P++++ +K+ +P E+PD NFVG ++GPRG T K +E +TG KI++RGKGS+++
Sbjct: 73 PDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDK 132
Query: 247 KVGRKD-GQP-LPGENEPLHAYVTAHNPEN-----VKKAVDRLVCLV 286
K ++ G+P NE LH +T + +N +K+AV+ + L+
Sbjct: 133 KKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLL 179
>sp|Q9GMY1|QKI_CANFA Protein quaking OS=Canis familiaris GN=QKI PE=2 SV=1
Length = 341
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 69/107 (64%), Gaps = 7/107 (6%)
Query: 187 PDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEG 246
PD P++++ +K+ +P E+PD NFVG ++GPRG T K +E +TG KI++RGKGS+++
Sbjct: 73 PDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDK 132
Query: 247 KVGRKD-GQP-LPGENEPLHAYVTAHNPEN-----VKKAVDRLVCLV 286
K ++ G+P NE LH +T + +N +K+AV+ + L+
Sbjct: 133 KKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLL 179
>sp|Q5W9D7|QKI_BOVIN Protein quaking OS=Bos taurus GN=QKI PE=2 SV=1
Length = 341
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 69/107 (64%), Gaps = 7/107 (6%)
Query: 187 PDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEG 246
PD P++++ +K+ +P E+PD NFVG ++GPRG T K +E +TG KI++RGKGS+++
Sbjct: 73 PDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDK 132
Query: 247 KVGRKD-GQP-LPGENEPLHAYVTAHNPEN-----VKKAVDRLVCLV 286
K ++ G+P NE LH +T + +N +K+AV+ + L+
Sbjct: 133 KKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLL 179
>sp|Q9YH18|QKI_CHICK Protein quaking OS=Gallus gallus GN=QKI PE=2 SV=2
Length = 340
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 69/107 (64%), Gaps = 7/107 (6%)
Query: 187 PDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEG 246
PD P++++ +K+ +P E+PD NFVG ++GPRG T K +E +TG KI++RGKGS+++
Sbjct: 73 PDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDK 132
Query: 247 KVGRKD-GQP-LPGENEPLHAYVTAHNPEN-----VKKAVDRLVCLV 286
K ++ G+P NE LH +T + +N +K+AV+ + L+
Sbjct: 133 KKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLL 179
>sp|Q6IRN2|QKIB_XENLA Protein quaking-B OS=Xenopus laevis GN=qki-b PE=1 SV=1
Length = 342
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 69/107 (64%), Gaps = 7/107 (6%)
Query: 187 PDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEG 246
PD P++++ +K+ +P E+PD NFVG ++GPRG T K +E +TG KI++RGKGS+++
Sbjct: 74 PDGIGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDK 133
Query: 247 KVGRKD-GQP-LPGENEPLHAYVTAHNPEN-----VKKAVDRLVCLV 286
K ++ G+P NE LH +T + +N +K+AV+ + L+
Sbjct: 134 KKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLL 180
>sp|Q6P104|QKIB_DANRE Protein quaking-B OS=Danio rerio GN=qkib PE=2 SV=1
Length = 319
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 68/107 (63%), Gaps = 7/107 (6%)
Query: 187 PDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEG 246
PD P+ ++ +K+ +P E+PD NFVG ++GPRG T K +E +TG KI++RGKGS+++
Sbjct: 73 PDAVGPIAQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDK 132
Query: 247 KVGRKD-GQP-LPGENEPLHAYVTAHNPEN-----VKKAVDRLVCLV 286
K ++ G+P NE LH +T + +N +K+AV+ + L+
Sbjct: 133 KKEEQNRGKPNWEHLNEDLHVLITVEDSQNRAEIKLKRAVEEVKKLL 179
>sp|Q75GR5|SPIN1_ORYSJ KH domain-containing protein SPIN1 OS=Oryza sativa subsp. japonica
GN=SPIN1 PE=1 SV=1
Length = 281
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 186 PPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKE 245
PP V+K ++ +P D +P+ NFVG ++GPRGN+LK +E TG ++ IRGKGS+K+
Sbjct: 124 PPSPSSHVVKKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKD 183
Query: 246 -GKVGRKDGQP-LPGENEPLHAYVTAHNPENVKKA 278
GK + G+P ++PLH + A P ++ A
Sbjct: 184 PGKEDKLRGKPGYEHLSDPLHILIEAEFPASIIDA 218
>sp|Q17339|GLD1_CAEEL Female germline-specific tumor suppressor gld-1 OS=Caenorhabditis
elegans GN=gld-1 PE=1 SV=1
Length = 463
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 56/87 (64%), Gaps = 8/87 (9%)
Query: 193 VIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKE-----GK 247
+I + +K+ +P++E+PD NFVG ++GPRG T K +E+DTG KI++RGKGS+++
Sbjct: 202 MISITEKIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRDKSKESAH 261
Query: 248 VGRKDGQPLPGENEPLHAYVTAHNPEN 274
G+ + + L + LH V + EN
Sbjct: 262 RGKANWEHL---EDDLHVLVQCEDTEN 285
>sp|Q8GWR3|QKIL5_ARATH KH domain-containing protein At1g09660 OS=Arabidopsis thaliana
GN=At1g09660 PE=2 SV=1
Length = 298
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 191 PPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGR 250
PP++K ++ +P D++P NFVG ++GPRGN+LK +E T ++ IRG+GSVK+ V
Sbjct: 142 PPIVKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKD-TVKE 200
Query: 251 KDGQPLPGEN---EPLHAYVTAHNPENV 275
+ + PG EPLH + A PE++
Sbjct: 201 EKLKGKPGYEHLCEPLHVLIEAELPEDI 228
>sp|Q0WLR1|QKIL1_ARATH KH domain-containing protein At4g26480 OS=Arabidopsis thaliana
GN=At4g26480 PE=2 SV=1
Length = 308
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 193 VIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKE-GKVGRK 251
++K +V IP D++P+ NFVG L+GPRGN+LK +E T +++IRG+GS+K+ K
Sbjct: 157 IVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMM 216
Query: 252 DGQP-LPGENEPLHAYVTAHNPENVKKA 278
G+P NEPLH V A P + A
Sbjct: 217 RGKPGYEHLNEPLHILVEAELPIEIVDA 244
>sp|Q6P0D0|QKIA_DANRE Protein quaking-A OS=Danio rerio GN=qkia PE=2 SV=2
Length = 341
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 64/102 (62%), Gaps = 7/102 (6%)
Query: 192 PVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRK 251
P++ + +K+ +P E+PD NFVG ++GPRG T K +E +TG KI++RG+ S+++ K +
Sbjct: 78 PIVHLQEKLFVPVKEYPDYNFVGRILGPRGLTAKQLEAETGCKIMVRGRSSMRDKKKEEQ 137
Query: 252 D-GQP-LPGENEPLHAYVTAHNPEN-----VKKAVDRLVCLV 286
+ G+P NE LH +T + + +++AV+ + L+
Sbjct: 138 NRGKPNWEHLNEDLHVLITVEDTQTRAEIKMRRAVEEVKKLL 179
>sp|Q5VWX1|KHDR2_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Homo sapiens GN=KHDRBS2 PE=1 SV=1
Length = 349
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKE 245
IK++++V+IP ++P NFVG L+GPRGN+LK ++++TGAK+ I GKGS+++
Sbjct: 58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRD 109
>sp|Q0VFL3|KHDR2_XENTR KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Xenopus tropicalis GN=khdrbs2 PE=2 SV=1
Length = 345
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGS----VKEGKVG 249
IK++++V+IP ++P NFVG L+GPRGN+LK ++++TGAK+ I GKGS +KE ++
Sbjct: 58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRDKIKEEELR 117
Query: 250 RKDGQPLPGENEPLHAYVTAHNP 272
+ D ++ LH + P
Sbjct: 118 KSDEAKHAHLSDELHVLLEVFAP 140
>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1
Length = 349
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKE 245
IK++++V+IP ++P NFVG L+GPRGN+LK ++++TGAK+ I GKGS+++
Sbjct: 58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRD 109
>sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Mus musculus GN=Khdrbs2 PE=1 SV=1
Length = 349
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 44/52 (84%)
Query: 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKE 245
IK++++V+IP ++P NFVG L+GPRGN+LK ++++TGAK+ I GKGS+++
Sbjct: 58 IKLSERVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRD 109
>sp|Q9FKT4|QKIL2_ARATH KH domain-containing protein At5g56140 OS=Arabidopsis thaliana
GN=At5g56140 PE=2 SV=1
Length = 315
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 193 VIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKE-GKVGRK 251
+ K +V IP D +P+ NFVG L+GPRGN+LK +E T +++IRG+GS+K+ K
Sbjct: 163 IAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMM 222
Query: 252 DGQP-LPGENEPLHAYVTAHNPENVKKA 278
G+P NEPLH V A P + A
Sbjct: 223 RGKPGYEHLNEPLHILVEAELPIEIVDA 250
>sp|Q08BJ2|KHDR2_DANRE KH domain-containing, RNA-binding, signal transduction-associated
protein 2 OS=Danio rerio GN=khdrbs2 PE=2 SV=1
Length = 346
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 44/52 (84%)
Query: 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKE 245
IK++++V+IP ++P NFVG L+GPRGN++K ++++TGAK+ I GKGS+++
Sbjct: 58 IKLSERVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRD 109
>sp|Q9ZVI3|QKIL3_ARATH KH domain-containing protein At2g38610 OS=Arabidopsis thaliana
GN=At2g38610 PE=1 SV=1
Length = 286
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 199 KVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKE-GKVGRKDGQP-L 256
++ IP D +P+ NFVG L+GPRGN+LK +E TG ++ IRGKGS+K+ K + G+P
Sbjct: 139 RLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGY 198
Query: 257 PGENEPLHAYVTAHNPENV 275
NE LH + A P ++
Sbjct: 199 EHLNEQLHILIEADLPASI 217
>sp|Q60749|KHDR1_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Mus musculus GN=Khdrbs1 PE=1 SV=2
Length = 443
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 6/84 (7%)
Query: 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSV----KEGKVG 249
+K+ ++V+IP ++P NFVG ++GP+GNT+K ++++TGAKI + GKGS+ KE ++
Sbjct: 154 MKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEEL- 212
Query: 250 RKDGQPLPGE-NEPLHAYVTAHNP 272
RK G P N LH ++ P
Sbjct: 213 RKGGDPKYAHLNMDLHVFIEVFGP 236
>sp|Q91V33|KHDR1_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Rattus norvegicus GN=Khdrbs1 PE=1 SV=1
Length = 443
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 6/84 (7%)
Query: 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSV----KEGKVG 249
+K+ ++V+IP ++P NFVG ++GP+GNT+K ++++TGAKI + GKGS+ KE ++
Sbjct: 154 MKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEEL- 212
Query: 250 RKDGQPLPGE-NEPLHAYVTAHNP 272
RK G P N LH ++ P
Sbjct: 213 RKGGDPKYAHLNMDLHVFIEVFGP 236
>sp|Q8UUW7|KHDR1_CHICK KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Gallus gallus GN=KHDRBS1 PE=2 SV=1
Length = 433
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 6/84 (7%)
Query: 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSV----KEGKVG 249
+K+ ++V+IP ++P NFVG ++GP+GNT+K ++++TGAKI + GKGS+ KE ++
Sbjct: 137 MKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEEL- 195
Query: 250 RKDGQPLPGE-NEPLHAYVTAHNP 272
RK G P N LH ++ P
Sbjct: 196 RKGGDPKYAHLNMDLHVFIEVFGP 219
>sp|Q07666|KHDR1_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 1 OS=Homo sapiens GN=KHDRBS1 PE=1 SV=1
Length = 443
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%), Gaps = 6/84 (7%)
Query: 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSV----KEGKVG 249
+K+ ++V+IP ++P NFVG ++GP+GNT+K ++++TGAKI + GKGS+ KE ++
Sbjct: 154 MKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEEL- 212
Query: 250 RKDGQPLPGE-NEPLHAYVTAHNP 272
RK G P N LH ++ P
Sbjct: 213 RKGGDPKYAHLNMDLHVFIEVFGP 236
>sp|Q8GYR4|QKIL4_ARATH KH domain-containing protein At3g08620 OS=Arabidopsis thaliana
GN=At3g08620 PE=2 SV=1
Length = 283
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 202 IPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKE-GKVGRKDGQP-LPGE 259
+P D +P+ NFVG L+GPRGN+LK +E TG ++ IRGKGS+K+ K + G+P
Sbjct: 141 LPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHL 200
Query: 260 NEPLHAYVTAHNPENV 275
NE LH + A P ++
Sbjct: 201 NEQLHILIEADLPIDI 216
>sp|Q9R226|KHDR3_MOUSE KH domain-containing, RNA-binding, signal transduction-associated
protein 3 OS=Mus musculus GN=Khdrbs3 PE=1 SV=1
Length = 346
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 39/52 (75%)
Query: 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKE 245
+K+ KV+IP + P NFVG L+GPRGN+LK ++++T K+ I GKGS+++
Sbjct: 54 MKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRD 105
>sp|Q9JLP1|KHDR3_RAT KH domain-containing, RNA-binding, signal transduction-associated
protein 3 OS=Rattus norvegicus GN=Khdrbs3 PE=1 SV=1
Length = 346
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 39/52 (75%)
Query: 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKE 245
+K+ KV+IP + P NFVG L+GPRGN+LK ++++T K+ I GKGS+++
Sbjct: 54 MKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRD 105
>sp|O75525|KHDR3_HUMAN KH domain-containing, RNA-binding, signal transduction-associated
protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1
Length = 346
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 39/52 (75%)
Query: 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKE 245
+K+ KV+IP + P NFVG L+GPRGN+LK ++++T K+ I GKGS+++
Sbjct: 54 MKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRD 105
>sp|P13230|GRP33_ARTSA Glycine-rich protein GRP33 OS=Artemia salina PE=2 SV=1
Length = 308
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 189 YKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKE 245
Y +K+ + +P D+ P NF+G L+GP G+T+K ++ +T KI I G+GS+++
Sbjct: 67 YNDTKVKLVSRCCLPVDQFPKYNFLGKLLGPGGSTMKQLQDETMTKISILGRGSMRD 123
>sp|C5C9U0|PNP_MICLC Polyribonucleotide nucleotidyltransferase OS=Micrococcus luteus
(strain ATCC 4698 / DSM 20030 / JCM 1464 / NBRC 3333 /
NCIMB 9278 / NCTC 2665 / VKM Ac-2230) GN=pnp PE=3 SV=1
Length = 753
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 10/139 (7%)
Query: 165 LEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTL 224
L + R + + +N P + P ++ V IP D+ +G +IGP+G +
Sbjct: 560 LTQAREARLHILSVLNAAIDAPDEMAPTAPRII-SVRIPVDK------IGAVIGPKGAMI 612
Query: 225 KSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVC 284
++ DTGA I I G+V +G DG ++A PE ++ + +V
Sbjct: 613 NQIQDDTGADITIEDDGTV---LIGATDGASAEAARSAVNAIANPQVPEVGERYLGTVVK 669
Query: 285 LVSARPRARFPPGADFILN 303
L + PG D +L+
Sbjct: 670 LTTFGAFVSLTPGKDGLLH 688
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,331,646
Number of Sequences: 539616
Number of extensions: 6721341
Number of successful extensions: 15036
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 264
Number of HSP's that attempted gapping in prelim test: 14389
Number of HSP's gapped (non-prelim): 777
length of query: 304
length of database: 191,569,459
effective HSP length: 117
effective length of query: 187
effective length of database: 128,434,387
effective search space: 24017230369
effective search space used: 24017230369
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)