Query psy1775
Match_columns 304
No_of_seqs 406 out of 1752
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 21:57:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k1g_A SF1-BO isoform; splicin 100.0 1.9E-31 6.7E-36 222.9 10.9 107 193-301 4-110 (131)
2 2bl5_A MGC83862 protein, quaki 100.0 3.2E-32 1.1E-36 229.4 4.9 100 196-300 2-108 (140)
3 2yqr_A KIAA0907 protein; struc 99.9 1.3E-26 4.3E-31 190.6 9.0 90 194-289 10-100 (119)
4 4fxw_B Splicing factor 1; UHM, 99.9 5.2E-23 1.8E-27 169.0 3.5 75 118-192 50-124 (124)
5 4aid_A Polyribonucleotide nucl 99.5 3E-14 1E-18 147.2 5.7 113 158-298 532-644 (726)
6 3u1k_A Polyribonucleotide nucl 99.4 1.7E-13 5.7E-18 140.0 7.0 103 157-287 528-630 (630)
7 2opv_A KHSRP protein; KH domai 99.4 1.7E-12 5.7E-17 100.0 9.3 73 195-288 13-85 (85)
8 2ihx_A Nucleocapsid (NC) prote 99.3 4.9E-13 1.7E-17 97.1 4.2 52 42-93 5-57 (61)
9 2ec7_A GAG polyprotein (PR55GA 99.3 9.7E-13 3.3E-17 91.5 4.9 44 40-87 5-48 (49)
10 2a51_A Nucleocapsid protein; s 99.3 1.6E-12 5.4E-17 86.2 3.7 38 43-84 2-39 (39)
11 1cl4_A Protein (GAG polyprotei 99.3 9.4E-13 3.2E-17 95.1 2.6 47 42-88 2-52 (60)
12 2li8_A Protein LIN-28 homolog 99.3 2.6E-12 9E-17 96.9 5.0 48 39-89 22-69 (74)
13 2bl6_A Nucleocapsid protein P1 99.3 2.7E-12 9.3E-17 84.1 3.4 37 42-84 1-37 (37)
14 1a1t_A Nucleocapsid protein; s 99.3 3.4E-12 1.2E-16 90.6 4.1 44 40-87 11-54 (55)
15 1we8_A Tudor and KH domain con 99.2 1.4E-11 4.7E-16 98.4 7.8 82 186-288 5-86 (104)
16 1x4m_A FAR upstream element bi 99.2 7E-12 2.4E-16 98.3 6.0 77 194-291 13-89 (94)
17 2ctk_A Vigilin; K homology typ 99.2 9.6E-12 3.3E-16 99.5 6.0 79 186-289 7-85 (104)
18 2cqf_A RNA-binding protein LIN 99.2 1E-11 3.5E-16 90.7 5.6 44 41-87 7-50 (63)
19 1dtj_A RNA-binding neurooncolo 99.2 2.8E-11 9.6E-16 90.8 7.4 74 195-288 2-75 (76)
20 1x4n_A FAR upstream element bi 99.2 1.8E-11 6.3E-16 95.5 6.5 75 193-290 12-86 (92)
21 1vig_A Vigilin; RNA-binding pr 99.2 1.7E-11 5.7E-16 91.4 5.4 66 196-286 5-70 (71)
22 2axy_A Poly(RC)-binding protei 99.2 2.4E-11 8.2E-16 91.0 4.9 70 195-289 4-73 (73)
23 2hh3_A KH-type splicing regula 99.1 2.9E-11 1E-15 97.0 5.3 75 195-292 10-84 (106)
24 1wvn_A Poly(RC)-binding protei 99.1 4.2E-11 1.5E-15 91.4 5.7 73 194-289 4-76 (82)
25 1zzk_A Heterogeneous nuclear r 99.1 6.4E-11 2.2E-15 90.4 6.6 72 195-289 6-77 (82)
26 2cte_A Vigilin; K homology typ 99.1 2.7E-11 9.1E-16 95.1 4.5 72 195-291 16-87 (94)
27 3cdi_A Polynucleotide phosphor 99.1 8.7E-12 3E-16 129.1 2.2 114 158-299 522-635 (723)
28 3ts2_A Protein LIN-28 homolog 99.1 3.1E-11 1.1E-15 102.4 5.0 49 37-88 93-141 (148)
29 2p2r_A Poly(RC)-binding protei 99.1 3.8E-11 1.3E-15 90.3 4.6 71 195-288 4-74 (76)
30 3nyb_B Protein AIR2; polya RNA 99.1 3.7E-11 1.2E-15 92.5 4.3 47 41-87 5-67 (83)
31 2cpq_A FragIle X mental retard 99.1 4.3E-11 1.5E-15 93.6 4.6 70 194-291 13-84 (91)
32 2hh2_A KH-type splicing regula 99.1 1E-10 3.5E-15 93.8 6.7 74 197-290 8-81 (107)
33 2ctm_A Vigilin; K homology typ 99.1 7.6E-11 2.6E-15 92.8 5.6 71 195-289 16-86 (95)
34 2ctl_A Vigilin; K homology typ 99.1 1.3E-10 4.3E-15 91.8 6.2 73 195-289 16-88 (97)
35 1ec6_A RNA-binding protein NOV 99.1 5.8E-11 2E-15 91.6 4.0 75 195-289 2-76 (87)
36 1e3p_A Guanosine pentaphosphat 99.0 1.6E-11 5.5E-16 127.6 -1.1 113 156-298 560-674 (757)
37 2ctj_A Vigilin; K homology typ 99.0 8E-11 2.7E-15 92.7 3.1 71 196-291 17-88 (95)
38 3krm_A Insulin-like growth fac 99.0 1.1E-09 3.6E-14 93.1 10.0 100 163-289 58-157 (163)
39 1j5k_A Heterogeneous nuclear r 99.0 1.1E-10 3.8E-15 90.5 3.2 72 195-289 13-84 (89)
40 2jvz_A KH type-splicing, FAR u 99.0 7.5E-10 2.6E-14 93.8 6.5 105 163-291 58-163 (164)
41 2dgr_A Ring finger and KH doma 99.0 3.2E-10 1.1E-14 87.1 3.6 68 195-288 9-76 (83)
42 2e3u_A PH-DIM2P, hypothetical 98.9 5.6E-10 1.9E-14 100.4 4.5 77 182-286 20-101 (219)
43 2jzx_A Poly(RC)-binding protei 98.9 2.4E-09 8.3E-14 90.6 7.9 103 163-288 57-159 (160)
44 2jvz_A KH type-splicing, FAR u 98.8 1.3E-08 4.4E-13 86.1 9.0 74 197-291 3-76 (164)
45 1j4w_A FUSE binding protein; s 98.8 1.9E-08 6.4E-13 86.4 9.6 71 196-286 104-174 (174)
46 2lli_A Protein AIR2; RNA surve 98.8 3.7E-09 1.3E-13 86.6 4.6 41 42-85 43-83 (124)
47 2anr_A Neuro-oncological ventr 98.8 7E-09 2.4E-13 89.3 5.9 74 195-289 103-176 (178)
48 2lli_A Protein AIR2; RNA surve 98.6 2.1E-08 7.3E-13 82.0 4.2 39 42-86 23-62 (124)
49 2jzx_A Poly(RC)-binding protei 98.6 3.3E-08 1.1E-12 83.5 4.8 71 194-289 3-73 (160)
50 1j4w_A FUSE binding protein; s 98.6 2.9E-08 1E-12 85.1 4.3 71 197-290 4-74 (174)
51 3krm_A Insulin-like growth fac 98.6 7.4E-08 2.5E-12 81.6 6.0 72 196-289 3-74 (163)
52 2anr_A Neuro-oncological ventr 98.6 4.8E-08 1.6E-12 84.0 4.9 76 195-290 5-80 (178)
53 2li8_A Protein LIN-28 homolog 98.2 4.6E-07 1.6E-11 68.1 2.5 37 49-85 1-43 (74)
54 1a6b_B Momulv, zinc finger pro 98.1 1.5E-06 5.1E-11 57.7 3.3 28 65-92 9-36 (40)
55 1dsq_A Nucleic acid binding pr 98.1 9.4E-07 3.2E-11 53.2 1.7 20 67-86 3-22 (26)
56 1u6p_A GAG polyprotein; MLV, A 98.0 4.6E-06 1.6E-10 59.3 4.4 29 65-93 22-50 (56)
57 2ctf_A Vigilin; K homology typ 97.9 1.6E-05 5.6E-10 62.9 6.1 65 196-288 27-92 (102)
58 2qnd_A FMR1 protein; KH domain 97.9 1.5E-05 5.2E-10 66.7 5.4 72 198-288 69-142 (144)
59 2e3u_A PH-DIM2P, hypothetical 97.8 5.4E-06 1.8E-10 74.4 2.4 55 212-290 139-193 (219)
60 1dsq_A Nucleic acid binding pr 97.8 9.1E-06 3.1E-10 48.8 2.2 20 42-61 3-22 (26)
61 1nc8_A Nucleocapsid protein; H 97.8 7.9E-06 2.7E-10 50.3 1.9 20 67-86 7-26 (29)
62 1tua_A Hypothetical protein AP 97.7 2.2E-05 7.7E-10 68.9 4.2 53 212-288 108-160 (191)
63 1nc8_A Nucleocapsid protein; H 97.7 1.6E-05 5.4E-10 48.9 2.0 22 40-61 5-26 (29)
64 1a6b_B Momulv, zinc finger pro 97.6 3.9E-05 1.3E-09 50.8 2.7 22 40-61 9-30 (40)
65 2ysa_A Retinoblastoma-binding 97.4 5.9E-05 2E-09 53.4 2.3 20 66-85 7-26 (55)
66 2qnd_A FMR1 protein; KH domain 97.4 0.00012 4.1E-09 61.2 4.1 61 195-281 3-63 (144)
67 1u6p_A GAG polyprotein; MLV, A 97.3 9.3E-05 3.2E-09 52.5 2.4 22 40-61 22-43 (56)
68 1tua_A Hypothetical protein AP 97.3 0.00028 9.4E-09 62.0 5.2 66 195-288 3-73 (191)
69 3n89_A Defective in GERM LINE 97.2 0.00034 1.1E-08 67.3 6.2 74 194-285 28-103 (376)
70 2a51_A Nucleocapsid protein; s 97.1 0.00017 5.8E-09 47.1 1.8 20 67-86 1-20 (39)
71 3n89_A Defective in GERM LINE 97.0 0.001 3.6E-08 63.9 6.8 95 164-286 163-259 (376)
72 2bl6_A Nucleocapsid protein P1 96.9 0.00036 1.2E-08 45.0 1.6 18 68-85 2-19 (37)
73 2ec7_A GAG polyprotein (PR55GA 96.8 0.0004 1.4E-08 47.6 1.8 21 66-86 6-26 (49)
74 2ysa_A Retinoblastoma-binding 96.7 0.00057 1.9E-08 48.3 2.0 20 41-60 7-26 (55)
75 3v69_A Protein filia; RNA-bind 96.7 0.0028 9.4E-08 52.6 5.9 77 181-286 46-122 (140)
76 2ihx_A Nucleocapsid (NC) prote 96.6 0.0007 2.4E-08 48.4 1.8 22 66-87 4-25 (61)
77 2cqf_A RNA-binding protein LIN 96.6 0.00096 3.3E-08 48.1 2.2 30 41-74 29-58 (63)
78 1a1t_A Nucleocapsid protein; s 96.5 0.00086 2.9E-08 46.8 1.7 21 66-86 12-32 (55)
79 3nyb_B Protein AIR2; polya RNA 96.5 0.00097 3.3E-08 50.9 2.0 21 41-61 46-66 (83)
80 1cl4_A Protein (GAG polyprotei 96.2 0.0025 8.6E-08 45.2 2.6 21 41-61 30-50 (60)
81 3ts2_A Protein LIN-28 homolog 95.3 0.0053 1.8E-07 51.5 1.6 20 66-85 97-116 (148)
82 1y14_B B16, RPB7, DNA-directed 94.6 2.7E-05 9.4E-10 66.8 -14.8 84 175-298 3-90 (171)
83 1go3_E DNA-directed RNA polyme 88.2 0.0086 3E-07 51.5 -6.6 40 194-242 5-56 (187)
84 2hqh_E Restin; beta/BETA struc 82.5 0.45 1.5E-05 28.2 1.1 19 67-85 4-22 (26)
85 2z0s_A Probable exosome comple 82.0 2.2 7.6E-05 37.9 6.0 53 211-285 157-209 (235)
86 2cxc_A NUSA; transcription ter 80.9 0.72 2.4E-05 38.4 2.2 36 199-240 39-74 (144)
87 2b8k_G B16, DNA-directed RNA p 76.9 0.01 3.5E-07 52.8 -11.0 56 175-244 3-62 (215)
88 2pzo_E CAP-Gly domain-containi 71.0 1.5 5.2E-05 28.7 1.2 19 67-85 21-39 (42)
89 2hqh_E Restin; beta/BETA struc 61.2 2.4 8.1E-05 25.1 0.6 19 42-60 4-22 (26)
90 2ba0_A Archeal exosome RNA bin 60.8 6.6 0.00023 34.7 3.8 27 211-237 145-171 (229)
91 1k0r_A NUSA; two component arr 57.0 3.2 0.00011 39.5 1.1 76 155-239 202-278 (366)
92 2c35_B Human RPB7, DNA-directe 52.6 0.078 2.7E-06 44.9 -9.9 54 177-244 5-60 (172)
93 3alr_A Nanos protein; zinc-fin 52.4 4.4 0.00015 31.8 1.0 42 41-86 36-94 (106)
94 2asb_A Transcription elongatio 52.2 3.9 0.00013 37.0 0.8 77 155-240 79-156 (251)
95 2pt7_G HP1451, hypothetical pr 46.6 4.4 0.00015 33.9 0.1 56 212-289 43-104 (152)
96 3e2u_E CAP-Gly domain-containi 46.0 7.6 0.00026 25.5 1.2 19 67-85 21-39 (42)
97 1wjw_A Phosphoacetylglucosamin 44.7 53 0.0018 25.4 6.3 49 222-287 45-94 (112)
98 2je6_I RRP4, exosome complex R 43.1 1.9 6.5E-05 38.8 -2.8 31 212-242 165-195 (251)
99 2pzo_E CAP-Gly domain-containi 43.1 6.7 0.00023 25.7 0.6 22 39-60 18-39 (42)
100 1hh2_P NUSA, N utilization sub 43.1 8.8 0.0003 36.2 1.6 76 155-239 198-274 (344)
101 2nn6_G Exosome complex exonucl 41.8 9.4 0.00032 35.1 1.6 53 211-285 219-271 (289)
102 2cxc_A NUSA; transcription ter 36.7 7.5 0.00026 32.1 0.1 37 196-238 103-139 (144)
103 2ja9_A Exosome complex exonucl 29.2 37 0.0013 28.6 3.2 52 211-284 100-152 (175)
104 3alr_A Nanos protein; zinc-fin 29.2 30 0.001 27.0 2.3 20 42-61 72-94 (106)
105 3h0g_G DNA-directed RNA polyme 27.3 0.43 1.5E-05 40.4 -9.3 54 182-245 11-64 (172)
106 3eth_A Phosphoribosylaminoimid 26.4 52 0.0018 30.5 4.0 51 224-288 291-341 (355)
107 3szp_A Transcriptional regulat 25.8 46 0.0016 27.9 3.3 21 222-242 34-54 (291)
108 2esn_A Probable transcriptiona 25.4 46 0.0016 28.5 3.3 21 222-242 43-63 (310)
109 3gku_A Probable RNA-binding pr 22.7 15 0.00051 32.6 -0.5 58 212-289 102-165 (225)
110 3fxq_A LYSR type regulator of 22.1 65 0.0022 27.6 3.6 21 222-242 35-55 (305)
111 1ytb_A Protein (tata binding p 21.6 1.2E+02 0.0041 25.6 5.0 35 232-288 141-176 (180)
112 3e2u_E CAP-Gly domain-containi 21.1 29 0.00098 22.7 0.7 24 37-60 16-39 (42)
113 3isp_A HTH-type transcriptiona 20.8 83 0.0028 26.8 4.0 19 222-240 39-57 (303)
114 1wju_A NEDD8 ultimate buster-1 20.6 71 0.0024 24.5 3.1 35 265-304 32-66 (100)
No 1
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.97 E-value=1.9e-31 Score=222.89 Aligned_cols=107 Identities=65% Similarity=0.991 Sum_probs=99.2
Q ss_pred CcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCH
Q psy1775 193 VIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNP 272 (304)
Q Consensus 193 ~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~ 272 (304)
..++++|||||+++||+|||||+||||+|+|+|+||++|||+|.|||+||+++++.++.+|.++++++|||||+|+|+++
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 35889999999999999999999999999999999999999999999999999988888888899999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCcccc
Q psy1775 273 ENVKKAVDRLVCLVSARPRARFPPGADFI 301 (304)
Q Consensus 273 ~~v~~A~~~I~~ll~~~~~~~~~~g~~~~ 301 (304)
+++++|+++|+.||.+.. .+|+++|.+
T Consensus 84 e~~~~A~~~I~~ll~~~~--~~p~~~d~~ 110 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQGI--ETPEDQNDL 110 (131)
T ss_dssp HHHHHHHHHHHHHHTTTT--SCCTTSSGG
T ss_pred HHHHHHHHHHHHHHhccC--CCCccHHHH
Confidence 999999999999998742 358888864
No 2
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=99.97 E-value=3.2e-32 Score=229.43 Aligned_cols=100 Identities=39% Similarity=0.712 Sum_probs=90.0
Q ss_pred eeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCC-CCCCCC-CCCCCCCcEEEEEeCCHH
Q psy1775 196 VNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVG-RKDGQP-LPGENEPLHAYVTAHNPE 273 (304)
Q Consensus 196 ~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~-~~~g~~-~~~~~e~LHv~I~a~~~~ 273 (304)
+++|||||+++||+|||||+||||+|+|+|+||++|||||.|||+||+++++.+ ...|.+ |++++|||||+|+|++.+
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 579999999999999999999999999999999999999999999999988643 345665 578999999999998875
Q ss_pred -----HHHHHHHHHHhhhcCCCCCCCCCCccc
Q psy1775 274 -----NVKKAVDRLVCLVSARPRARFPPGADF 300 (304)
Q Consensus 274 -----~v~~A~~~I~~ll~~~~~~~~~~g~~~ 300 (304)
+|++|+++|+.||.+. +||+|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~-----~e~~de 108 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPA-----AEGEDS 108 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC-----SSSSSH
T ss_pred hhHHHHHHHHHHHHHHHCCCC-----CcchhH
Confidence 8999999999999886 778774
No 3
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.93 E-value=1.3e-26 Score=190.63 Aligned_cols=90 Identities=27% Similarity=0.364 Sum_probs=80.9
Q ss_pred cceeEEEEeCCC-CCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCH
Q psy1775 194 IKVNDKVMIPQD-EHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNP 272 (304)
Q Consensus 194 ~~~~~ki~IP~~-~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~ 272 (304)
.++++|||||++ .||+|||||+||||+|+|+|+|+++|||||.|||+||++... ....+++|||||+|+|++.
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~------~~~~e~~e~l~V~I~a~~~ 83 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEP------ASGREAFEPMYIYISHPKP 83 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCT------TTSSCCSSBCEEEEEESSH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCcccccc------ccccccCCCcEEEEEeCCH
Confidence 468999999999 699999999999999999999999999999999999986321 1224789999999999999
Q ss_pred HHHHHHHHHHHhhhcCC
Q psy1775 273 ENVKKAVDRLVCLVSAR 289 (304)
Q Consensus 273 ~~v~~A~~~I~~ll~~~ 289 (304)
+++++|+++|+.||.+.
T Consensus 84 e~i~~A~~~Ie~Ll~~v 100 (119)
T 2yqr_A 84 EGLAAAKKLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhch
Confidence 99999999999999764
No 4
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=99.86 E-value=5.2e-23 Score=169.01 Aligned_cols=75 Identities=56% Similarity=0.922 Sum_probs=68.0
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCCCCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Q psy1775 118 PPPDKRQRDNDSYRKNNTSGSLSPSPEPIYSSDGKRMNTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPP 192 (304)
Q Consensus 118 ~~e~tr~L~tG~~~~~~~~~~rsPsp~p~yd~~gkr~ntr~~r~~~~Le~er~~~i~~l~~~~p~~~~P~~~~~~ 192 (304)
.++|+++|++|+++++.++..|||||+|+||+.|+|+||||+|++++||+||++||++|++++|.|+||.||++|
T Consensus 50 ieeIt~kL~~g~l~i~~~~~~RSPSPpP~Yd~~G~R~NTRE~R~r~~LE~ER~~lIe~~~k~~P~fkpP~DYkpp 124 (124)
T 4fxw_B 50 IEDLTRKLRTGDLGIPPNPEDRSPSPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPP 124 (124)
T ss_dssp HHHHHHHHHHCCCCCCSSTTSSCCCCCCCBCTTSCBSSCHHHHHHHHHHHHHHHHHHHGGGTCSSCCCCCC----
T ss_pred HHHHHHHHhcCCcCCCCCcccCCCCCCCccCccccccchHHHHHHHHHHHHHHHHHHHHHHHCcCCCCCCCCCCC
Confidence 367999999999988767889999999999999999999999999999999999999999999999999999985
No 5
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.46 E-value=3e-14 Score=147.16 Aligned_cols=113 Identities=19% Similarity=0.282 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEE
Q psy1775 158 EYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIII 237 (304)
Q Consensus 158 ~~r~~~~Le~er~~~i~~l~~~~p~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~I 237 (304)
...+.++|++++.++.+++..|...+..|+...++++|++..+.||++ +||.||||+|+|+|.|+++||++|.|
T Consensus 532 ~e~l~~aL~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~------ki~~vig~gg~~i~~i~~~tg~~idi 605 (726)
T 4aid_A 532 PAIMEQALAQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTD------KIREVIGSGGKVIREIVATTGAKVDI 605 (726)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHH------HHHhhcCCCchhHHHHHHHHCCceeE
Confidence 467899999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred eCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhhhcCCCCCCCCCCc
Q psy1775 238 RGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLVSARPRARFPPGA 298 (304)
Q Consensus 238 rG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~ll~~~~~~~~~~g~ 298 (304)
...|. |.|++.|.+++++|+++|+.|+....+|++|+|.
T Consensus 606 ~ddG~----------------------v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~ 644 (726)
T 4aid_A 606 NDDGV----------------------VKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGK 644 (726)
T ss_dssp ------------------------------CCSCHHHHHHHHHC-----------------
T ss_pred ECCce----------------------EEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEE
Confidence 98887 5599999999999999999999999999999995
No 6
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.41 E-value=1.7e-13 Score=140.04 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEE
Q psy1775 157 REYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKII 236 (304)
Q Consensus 157 r~~r~~~~Le~er~~~i~~l~~~~p~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~ 236 (304)
....+.++|++++.++.+++..|...+..|+...++++|++..+.||++ +||.||||+|+|+|.|+++|||+|.
T Consensus 528 s~~~l~~aL~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~------kI~~vIG~gG~~Ik~I~e~tg~~I~ 601 (630)
T 3u1k_A 528 PIKIVMEAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLS------KRAKFVGPGGYNLKKLQAETGVTIS 601 (630)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHH------HHHHHHCGGGHHHHHHHHHHCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChh------HhheeECCCChhHHHHHHHHCCEEE
Confidence 3567899999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhhhc
Q psy1775 237 IRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLVS 287 (304)
Q Consensus 237 IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~ll~ 287 (304)
|...|. |.|+|.|.+++++|+++|+.|+.
T Consensus 602 I~d~G~----------------------V~I~~~~~~~~~~A~~~I~~i~~ 630 (630)
T 3u1k_A 602 QVDEET----------------------FSVFAPTPSAMHEARDFITEICK 630 (630)
T ss_dssp ECSSSE----------------------EEEEESSHHHHHHHHHHTTC---
T ss_pred EcCCcE----------------------EEEEeCCHHHHHHHHHHHHHHhC
Confidence 998777 77999999999999999998863
No 7
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.38 E-value=1.7e-12 Score=99.97 Aligned_cols=73 Identities=26% Similarity=0.470 Sum_probs=63.0
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
..+..|.||.+ ++|+|||++|+|+|.|+++|||+|.|...|+.. ...+-+|.|+| +.++
T Consensus 13 ~~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--------------~~~er~v~I~G-~~~~ 71 (85)
T 2opv_A 13 GTVQEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQN--------------TNVDKPLRIIG-DPYK 71 (85)
T ss_dssp SEEEEEEECTT------THHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS--------------TTSCEEEEEEE-CHHH
T ss_pred CEEEEEEeChh------heeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC--------------CCCceEEEEEe-CHHH
Confidence 46789999998 999999999999999999999999998876511 13355799999 9999
Q ss_pred HHHHHHHHHhhhcC
Q psy1775 275 VKKAVDRLVCLVSA 288 (304)
Q Consensus 275 v~~A~~~I~~ll~~ 288 (304)
+++|+++|+.|+.+
T Consensus 72 v~~A~~~I~~i~~e 85 (85)
T 2opv_A 72 VQQACEMVMDILRE 85 (85)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999853
No 8
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=99.35 E-value=4.9e-13 Score=97.10 Aligned_cols=52 Identities=33% Similarity=0.745 Sum_probs=39.0
Q ss_pred CCcccCCCCCcccCCCCCCCCCc-ccccccccccccccccccCCCCCCCCCCC
Q psy1775 42 PRCTNCGASDHKSWLCPDKPNIT-NSTLCSSCGGAGHIARDCREKRPGMGGPP 93 (304)
Q Consensus 42 ~~C~~Cg~~GH~~~~Cp~~~~~~-~~~~C~~CG~~GH~ardC~~~~~~~~g~~ 93 (304)
..||+||+.||++++||...... ....||+||+.||+|+||++.+.+.++.+
T Consensus 5 ~~C~~Cg~~GH~a~~C~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~~~~g~~~ 57 (61)
T 2ihx_A 5 GLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQCRKRDGNQGQRP 57 (61)
T ss_dssp TBCSSSCCBTCCGGGCTTTTSSSCCCSBCTTTCCBSSCGGGCCCCC-------
T ss_pred CcccccCCCCeehhhCcCCcCCCCCCCeeCCCCCCCCCcCCCcCCCcCCCCCC
Confidence 57999999999999999864321 24789999999999999999987655443
No 9
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=99.33 E-value=9.7e-13 Score=91.50 Aligned_cols=44 Identities=32% Similarity=0.739 Sum_probs=38.8
Q ss_pred CCCCcccCCCCCcccCCCCCCCCCcccccccccccccccccccCCCCC
Q psy1775 40 EGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRP 87 (304)
Q Consensus 40 ~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~CG~~GH~ardC~~~~~ 87 (304)
....||+||+.||++++||... ...||+||+.||+++|||+++.
T Consensus 5 r~~~C~~Cg~~GH~a~~C~~~~----~~~C~~Cg~~GH~~~~C~~~~~ 48 (49)
T 2ec7_A 5 KVIRCWNCGKEGHSARQCRAPR----RQGCWKCGKTGHVMAKCPERQA 48 (49)
T ss_dssp CCCBCTTTCCBTCCTTTCCCSS----CCSCSSSCCSSCCGGGCCSSCC
T ss_pred CcCeeeecCCCCcChhhCcCCC----CCeeCcCCCcCCccCCCcCCCC
Confidence 3568999999999999999853 4689999999999999998764
No 10
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=99.29 E-value=1.6e-12 Score=86.19 Aligned_cols=38 Identities=29% Similarity=0.746 Sum_probs=34.7
Q ss_pred CcccCCCCCcccCCCCCCCCCcccccccccccccccccccCC
Q psy1775 43 RCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCRE 84 (304)
Q Consensus 43 ~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~CG~~GH~ardC~~ 84 (304)
.||+||+.||++++||..+ ...||+||+.||+++|||+
T Consensus 2 ~C~~Cg~~GH~a~~C~~~~----~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQPR----QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp BCTTTCCBSSCTTTCCSCC----CSSCTTTCCSSSCTTTSCC
T ss_pred eeeccCCCCcccccCCCCC----CCccccCCCCCCccCcCcC
Confidence 6999999999999999853 4789999999999999984
No 11
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=99.28 E-value=9.4e-13 Score=95.13 Aligned_cols=47 Identities=26% Similarity=0.601 Sum_probs=20.9
Q ss_pred CCcccCCCCCcccCCCCCCCCCc----ccccccccccccccccccCCCCCC
Q psy1775 42 PRCTNCGASDHKSWLCPDKPNIT----NSTLCSSCGGAGHIARDCREKRPG 88 (304)
Q Consensus 42 ~~C~~Cg~~GH~~~~Cp~~~~~~----~~~~C~~CG~~GH~ardC~~~~~~ 88 (304)
..||+||+.||++++||...... ....||+||+.||+|+||+++..+
T Consensus 2 ~~Cf~Cg~~GH~a~~C~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~~~ 52 (60)
T 1cl4_A 2 GSCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSKTDN 52 (60)
T ss_dssp ---------------------------CCCSCSSCSSCSSCSTTCCCTTSS
T ss_pred CccccCCCCCcCHhhCcCCCCCccccCCCcceeECCCCCCccCcCCCcccc
Confidence 46999999999999999864211 257899999999999999998754
No 12
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=99.28 E-value=2.6e-12 Score=96.87 Aligned_cols=48 Identities=31% Similarity=0.659 Sum_probs=40.8
Q ss_pred CCCCCcccCCCCCcccCCCCCCCCCcccccccccccccccccccCCCCCCC
Q psy1775 39 NEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRPGM 89 (304)
Q Consensus 39 ~~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~CG~~GH~ardC~~~~~~~ 89 (304)
.....||+||+.||++++|+... ....||+||+.||+++|||+...+.
T Consensus 22 ~r~~~C~~Cg~~GH~a~~C~~~~---~~~~C~~Cg~~GH~ar~Cp~~~~~~ 69 (74)
T 2li8_A 22 SKGDRCYNCGGLDHHAKECKLPP---QPKKCHFCQSISHMVASCPLKAQQG 69 (74)
T ss_dssp STTSCCTTTCCSSSCTTTCSSCC---CCCCCTTTCCTTSCGGGCTTGGGTC
T ss_pred CCCCcccccCCcCcCcccCCCCC---CCCccCCcCCcCCccCcCcCCcCCC
Confidence 35578999999999999999753 3478999999999999999887543
No 13
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=99.25 E-value=2.7e-12 Score=84.07 Aligned_cols=37 Identities=35% Similarity=0.875 Sum_probs=33.9
Q ss_pred CCcccCCCCCcccCCCCCCCCCcccccccccccccccccccCC
Q psy1775 42 PRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCRE 84 (304)
Q Consensus 42 ~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~CG~~GH~ardC~~ 84 (304)
+.||+||+.||++++||.. ..||+||+.||+++|||+
T Consensus 1 ~~C~~Cg~~GH~~~~C~~~------~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 1 QTCYNCGKPGHLSSQCRAP------KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CCBSSSCCSSCCTTTSSCB------TTCSSCCCTTGGGGTTCC
T ss_pred CcccccCCCCcchhhCcCc------CeEccCCCcCCccCcCcC
Confidence 3699999999999999984 689999999999999984
No 14
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=99.25 E-value=3.4e-12 Score=90.63 Aligned_cols=44 Identities=32% Similarity=0.737 Sum_probs=38.7
Q ss_pred CCCCcccCCCCCcccCCCCCCCCCcccccccccccccccccccCCCCC
Q psy1775 40 EGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRP 87 (304)
Q Consensus 40 ~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~CG~~GH~ardC~~~~~ 87 (304)
....||+||+.||++++||... ...||+||+.||+++|||+.+.
T Consensus 11 ~~~~C~~Cg~~GH~a~~C~~~~----~~~C~~Cg~~GH~~~~C~~~~~ 54 (55)
T 1a1t_A 11 KTVKCFNCGKEGHIAKNCRAPR----KKGCWKCGKEGHQMKDCTERQA 54 (55)
T ss_dssp GTCBCTTTCCBSSCGGGCSSCS----CCBCTTTCCBSSCGGGCSSSCC
T ss_pred CCcceeeeCCCCcChhhcCCCC----CCEeCCCCCcCCccCCCcCcCC
Confidence 3578999999999999999853 4789999999999999998764
No 15
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.25 E-value=1.4e-11 Score=98.37 Aligned_cols=82 Identities=23% Similarity=0.243 Sum_probs=67.2
Q ss_pred CCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEE
Q psy1775 186 PPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHA 265 (304)
Q Consensus 186 P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv 265 (304)
.....+++++.+.+|.||.+ ++|+|||++|+|+|+|+++|||+|.|....... ..++-.|
T Consensus 5 ~~~~~s~~ap~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------------~~~~~~V 64 (104)
T 1we8_A 5 SSGILTENTPVFEQLSVPQR------SVGRIIGRGGETIRSICKASGAKITCDKESEGT--------------LLLSRLI 64 (104)
T ss_dssp CCCCCSSSCEEEEEEEEETT------THHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS--------------SSSEEEE
T ss_pred CccccCCCCCEEEEEEEChh------heeeeECCCCHHHHHHHHHHCCEEEEecCCCCC--------------CCCcceE
Confidence 34556678899999999998 999999999999999999999999997653210 1123459
Q ss_pred EEEeCCHHHHHHHHHHHHhhhcC
Q psy1775 266 YVTAHNPENVKKAVDRLVCLVSA 288 (304)
Q Consensus 266 ~I~a~~~~~v~~A~~~I~~ll~~ 288 (304)
.|+|.++ .+++|+++|+.++.+
T Consensus 65 ~I~G~~~-~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 65 KISGTQK-EVAAAKHLILEKVSE 86 (104)
T ss_dssp EEEEEHH-HHHHHHHHHHHHHHH
T ss_pred EEEcCHH-HHHHHHHHHHHHHhh
Confidence 9999766 799999999999864
No 16
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.24 E-value=7e-12 Score=98.33 Aligned_cols=77 Identities=23% Similarity=0.433 Sum_probs=65.7
Q ss_pred cceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHH
Q psy1775 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPE 273 (304)
Q Consensus 194 ~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~ 273 (304)
.....+|.||.+ ++|+|||++|+|+|+|+++|||+|.|...+... ...+-.|.|++ +.+
T Consensus 13 ~~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--------------~~~~r~v~I~G-~~~ 71 (94)
T 1x4m_A 13 GNAVQEIMIPAS------KAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN--------------TGADKPLRITG-DPY 71 (94)
T ss_dssp CCEEEEEEECHH------HHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS--------------SCSCEEEEEEE-CTT
T ss_pred CcEEEEEEEChh------hcceEECCCCHHHHHHHHHHCCeEEecCCCCCC--------------CCCceEEEEEe-CHH
Confidence 356789999998 999999999999999999999999998765421 12345689999 889
Q ss_pred HHHHHHHHHHhhhcCCCC
Q psy1775 274 NVKKAVDRLVCLVSARPR 291 (304)
Q Consensus 274 ~v~~A~~~I~~ll~~~~~ 291 (304)
++++|+++|+.+|.+.++
T Consensus 72 ~v~~A~~~I~~~i~~~~~ 89 (94)
T 1x4m_A 72 KVQQAKEMVLELIRDQGS 89 (94)
T ss_dssp THHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 999999999999998754
No 17
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.23 E-value=9.6e-12 Score=99.51 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=67.7
Q ss_pred CCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEE
Q psy1775 186 PPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHA 265 (304)
Q Consensus 186 P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv 265 (304)
......++++.+..|.||.+ ++|.||||+|+|+|+|+++|||+|.|-..|+. +=.|
T Consensus 7 Ak~~i~~~ap~~~~i~Ip~~------~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~------------------~~~V 62 (104)
T 2ctk_A 7 GKEALEALVPVTIEVEVPFD------LHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQ------------------SDII 62 (104)
T ss_dssp CCCCCCCSSCEEEEEECCHH------HHHHHHCSSSHHHHHHHHHTCCEEECCCTTTT------------------CCEE
T ss_pred HHHHHHhhCCEEEEEEEChH------HccceeCCCchHHHHHHHHHCCEEEecCCCCC------------------cceE
Confidence 34556678889999999999 99999999999999999999999999876641 0159
Q ss_pred EEEeCCHHHHHHHHHHHHhhhcCC
Q psy1775 266 YVTAHNPENVKKAVDRLVCLVSAR 289 (304)
Q Consensus 266 ~I~a~~~~~v~~A~~~I~~ll~~~ 289 (304)
.|+|.. +++++|+++|+.++...
T Consensus 63 ~I~G~~-e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 63 AITGLA-ANLDRAKAGLLERVKEL 85 (104)
T ss_dssp EEEECH-HHHHHHHHHHHHHHHHH
T ss_pred EEEcCH-HHHHHHHHHHHHHHhhH
Confidence 999985 89999999999998764
No 18
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=1e-11 Score=90.75 Aligned_cols=44 Identities=34% Similarity=0.737 Sum_probs=38.6
Q ss_pred CCCcccCCCCCcccCCCCCCCCCcccccccccccccccccccCCCCC
Q psy1775 41 GPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRP 87 (304)
Q Consensus 41 ~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~CG~~GH~ardC~~~~~ 87 (304)
...||+||+.||++++||... ....||+||+.||+|+|||+...
T Consensus 7 ~~~C~~Cg~~GH~a~~C~~~~---~~~~C~~Cg~~GH~ar~Cp~~~~ 50 (63)
T 2cqf_A 7 GDRCYNCGGLDHHAKECKLPP---QPKKCHFCQSISHMVASCPLKAQ 50 (63)
T ss_dssp CCCCSSSCCSSSCTTTCCSCC---CSSCCTTTCCSSSCTTTCTGGGC
T ss_pred CCcccccCCCCcChhhCCCCC---CCCccCCcCCcCCccCcCCCccc
Confidence 467999999999999999753 35789999999999999998764
No 19
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.21 E-value=2.8e-11 Score=90.76 Aligned_cols=74 Identities=26% Similarity=0.348 Sum_probs=60.7
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
+...++.||.+ ++|.|||++|+|+|+|+++|||+|.|...+.... ...+-.|.|+|. .++
T Consensus 2 ~~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~-------------~~~~~~v~I~G~-~~~ 61 (76)
T 1dtj_A 2 KELVEMAVPEN------LVGAILGKGGKTLVEYQELTGARIQISKKGEFLP-------------GTRNRRVTITGS-PAA 61 (76)
T ss_dssp CEEEEEEEETT------THHHHHCSTTHHHHHHHHHHCCEEEECCTTCCST-------------TCCEEEEEEEES-HHH
T ss_pred ceEEEEEEChH------HcceEECCCchHHHHHHHHhCCEEEECcCCCCCC-------------CCceeEEEEEeC-HHH
Confidence 45679999998 9999999999999999999999999987543111 122346899997 899
Q ss_pred HHHHHHHHHhhhcC
Q psy1775 275 VKKAVDRLVCLVSA 288 (304)
Q Consensus 275 v~~A~~~I~~ll~~ 288 (304)
+++|..+|+.++.+
T Consensus 62 v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 62 TQAAQYLISQRVTY 75 (76)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999864
No 20
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.21 E-value=1.8e-11 Score=95.54 Aligned_cols=75 Identities=23% Similarity=0.373 Sum_probs=63.3
Q ss_pred CcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCH
Q psy1775 193 VIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNP 272 (304)
Q Consensus 193 ~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~ 272 (304)
......+|.||.+ ++|+|||++|+|+|+|+++|||+|.|...... ..+-.|.|+|. .
T Consensus 12 ~~~~~~~i~Ip~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g----------------~~~r~v~I~G~-~ 68 (92)
T 1x4n_A 12 RSVMTEEYKVPDG------MVGFIIGRGGEQISRIQQESGCKIQIAPDSGG----------------LPERSCMLTGT-P 68 (92)
T ss_dssp CCCEEEEEEEEHH------HHHHHHCSSSHHHHHHHHHSCCEEEECSCCTT----------------CSEEEEEEEEC-H
T ss_pred CCCEEEEEEEChH------HcceeECCCchHHHHHHHHhCCEEEEcCCCCC----------------CCccEEEEEeC-H
Confidence 3467889999998 99999999999999999999999999875310 12235889997 9
Q ss_pred HHHHHHHHHHHhhhcCCC
Q psy1775 273 ENVKKAVDRLVCLVSARP 290 (304)
Q Consensus 273 ~~v~~A~~~I~~ll~~~~ 290 (304)
+++++|+++|+.+|....
T Consensus 69 e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 69 ESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999998764
No 21
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.19 E-value=1.7e-11 Score=91.37 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=57.3
Q ss_pred eeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHH
Q psy1775 196 VNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENV 275 (304)
Q Consensus 196 ~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v 275 (304)
....+.||.+ ++|.||||+|+++++|+++|||+|.|-..|. .+ =-|.|+|. .+++
T Consensus 5 ~~~~i~I~~~------~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~-~~-----------------~~V~I~G~-~~~v 59 (71)
T 1vig_A 5 DYVEINIDHK------FHRHLIGKSGANINRIKDQYKVSVRIPPDSE-KS-----------------NLIRIEGD-PQGV 59 (71)
T ss_dssp EEEEEEECSS------HHHHHTCSSCCHHHHHHHHTCCEEECCCCCS-SS-----------------EEEEEEES-SHHH
T ss_pred EEEEEEECHH------HhhhhcCCCCccHHHHHHHHCCEEEECCCCC-cc-----------------cEEEEEcC-HHHH
Confidence 4678999999 9999999999999999999999999987664 10 13889999 5899
Q ss_pred HHHHHHHHhhh
Q psy1775 276 KKAVDRLVCLV 286 (304)
Q Consensus 276 ~~A~~~I~~ll 286 (304)
++|+++|+.|+
T Consensus 60 ~~A~~~I~~i~ 70 (71)
T 1vig_A 60 QQAKRELLELA 70 (71)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 22
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.16 E-value=2.4e-11 Score=90.95 Aligned_cols=70 Identities=19% Similarity=0.310 Sum_probs=60.5
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
....++.||.+ ++|.|||++|+++|+|+++|||+|.|...|+. +=-|.|+|. .++
T Consensus 4 ~~~~~i~ip~~------~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~------------------er~v~I~G~-~~~ 58 (73)
T 2axy_A 4 TLTIRLLMHGK------EVGSIIGKKGESVKKMREESGARINISEGNCP------------------ERIITLAGP-TNA 58 (73)
T ss_dssp CEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECSSCCS------------------EEEEEEEEC-HHH
T ss_pred eEEEEEEEChh------HeeeEECCCCHHHHHHHHHHCCEEEEecCCCC------------------cEEEEEEeC-HHH
Confidence 46789999998 99999999999999999999999999876431 123889998 999
Q ss_pred HHHHHHHHHhhhcCC
Q psy1775 275 VKKAVDRLVCLVSAR 289 (304)
Q Consensus 275 v~~A~~~I~~ll~~~ 289 (304)
+.+|+++|..+|.++
T Consensus 59 v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 59 IFKAFAMIIDKLEED 73 (73)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998763
No 23
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.15 E-value=2.9e-11 Score=97.04 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=61.3
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
..+.+|.||.+ ++|+|||++|+|+|+|+++|||+|.|..... ...+-.|.|++. .++
T Consensus 10 ~~~~~i~Ip~~------~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~----------------~~~er~V~I~G~-~e~ 66 (106)
T 2hh3_A 10 GGGIDVPVPRH------SVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG----------------TGPEKIAHIMGP-PDR 66 (106)
T ss_dssp --CEEEEEETT------THHHHHTTTTHHHHHHHHHHTCEEEECSSCS----------------SSSEEEEEEESS-HHH
T ss_pred CeEEEEEECHH------HcCccCCCCcHHHHHHHHHHCcEEEEecCCC----------------CCceeEEEEEeC-HHH
Confidence 34789999998 9999999999999999999999999975431 112346889986 999
Q ss_pred HHHHHHHHHhhhcCCCCC
Q psy1775 275 VKKAVDRLVCLVSARPRA 292 (304)
Q Consensus 275 v~~A~~~I~~ll~~~~~~ 292 (304)
+++|+++|++++.+.+++
T Consensus 67 v~~A~~~I~~ii~~~~~g 84 (106)
T 2hh3_A 67 CEHAARIINDLLQSLRSG 84 (106)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhccccC
Confidence 999999999999887654
No 24
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.14 E-value=4.2e-11 Score=91.35 Aligned_cols=73 Identities=18% Similarity=0.328 Sum_probs=59.9
Q ss_pred cceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHH
Q psy1775 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPE 273 (304)
Q Consensus 194 ~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~ 273 (304)
...+.+|.||.+ ++|.|||++|+|+|+|+++|||+|.|..... ...+-.|.|+|.. +
T Consensus 4 ~~~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~----------------~~~~r~v~I~G~~-~ 60 (82)
T 1wvn_A 4 SQTTHELTIPNN------LIGCIIGRQGANINEIRQMSGAQIKIANPVE----------------GSSGRQVTITGSA-A 60 (82)
T ss_dssp TCEEEEEEEEGG------GHHHHHCGGGHHHHHHHHHHCCEEEECCCCT----------------TCSEEEEEEEECH-H
T ss_pred CcEEEEEEEchH------hccceeCCCchhHHHHHHHhCCEEEEecCCC----------------CCCceEEEEEcCH-H
Confidence 356789999998 9999999999999999999999999976311 0123358899965 9
Q ss_pred HHHHHHHHHHhhhcCC
Q psy1775 274 NVKKAVDRLVCLVSAR 289 (304)
Q Consensus 274 ~v~~A~~~I~~ll~~~ 289 (304)
++++|+++|+.++.+.
T Consensus 61 ~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 61 SISLAQYLINARLSSE 76 (82)
T ss_dssp HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999999875
No 25
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.14 E-value=6.4e-11 Score=90.40 Aligned_cols=72 Identities=25% Similarity=0.368 Sum_probs=60.4
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
..+.+|.||.+ ++|.|||++|+|+|+|+++|||+|.|...-. ...+-.|.|+| +.++
T Consensus 6 ~~~~~i~Vp~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~----------------~~~~~~v~I~G-~~~~ 62 (82)
T 1zzk_A 6 IITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEPLE----------------GSEDRIITITG-TQDQ 62 (82)
T ss_dssp CEEEEEEEETT------TGGGGTCGGGHHHHHHHHHHCCEEEECCTTS----------------CSSEEEEEEEE-CHHH
T ss_pred eEEEEEEEChH------hcCeeECCCchHHHHHHHHHCCEEEEcCCCC----------------CCCceEEEEEe-CHHH
Confidence 46789999998 9999999999999999999999999975311 01223589999 5999
Q ss_pred HHHHHHHHHhhhcCC
Q psy1775 275 VKKAVDRLVCLVSAR 289 (304)
Q Consensus 275 v~~A~~~I~~ll~~~ 289 (304)
+++|+++|++++.+.
T Consensus 63 v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 63 IQNAQYLLQNSVKQY 77 (82)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999763
No 26
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.14 E-value=2.7e-11 Score=95.05 Aligned_cols=72 Identities=22% Similarity=0.385 Sum_probs=61.3
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
.....|.||.+ ++|.||||+|+|+|+|+++|||+|.|-..++ +.=.|.|+|. .++
T Consensus 16 ~~t~~i~Ip~~------~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~------------------~~~~V~I~G~-~e~ 70 (94)
T 2cte_A 16 QASATVAIPKE------HHRFVIGKNGEKLQDLELKTATKIQIPRPDD------------------PSNQIKITGT-KEG 70 (94)
T ss_dssp CEEEEEECCTT------THHHHHCSSSCHHHHHHHHTTCCCBCCCTTS------------------SCCEEEEEEC-HHH
T ss_pred ceEEEEEEChH------HeeeeECCCChhHHHHHHHHCCEEEeCCCCC------------------CCCeEEEEEC-HHH
Confidence 46789999999 9999999999999999999999999965432 0125999998 999
Q ss_pred HHHHHHHHHhhhcCCCC
Q psy1775 275 VKKAVDRLVCLVSARPR 291 (304)
Q Consensus 275 v~~A~~~I~~ll~~~~~ 291 (304)
+++|+++|+.++.....
T Consensus 71 v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 71 IEKARHEVLLISAEQDK 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcccc
Confidence 99999999999876543
No 27
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.14 E-value=8.7e-12 Score=129.14 Aligned_cols=114 Identities=17% Similarity=0.246 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEE
Q psy1775 158 EYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIII 237 (304)
Q Consensus 158 ~~r~~~~Le~er~~~i~~l~~~~p~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~I 237 (304)
...+.++|++++.++.+++..|...+..|+...++++|++..+.||++ +||.+|||+|+|++.|.++||++|.|
T Consensus 522 ~e~l~~~l~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~------ki~~~ig~gGk~I~~I~~~~G~~IdI 595 (723)
T 3cdi_A 522 KEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPD------KIKDVIGKGGSVIRALTEETGTTIEI 595 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHH------HhcccccccceeeeeeehhhCceEEe
Confidence 456899999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred eCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhhhcCCCCCCCCCCcc
Q psy1775 238 RGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLVSARPRARFPPGAD 299 (304)
Q Consensus 238 rG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~ll~~~~~~~~~~g~~ 299 (304)
.+.|. |+|++.+.+.+++|.++|+.++....+|++|+|.=
T Consensus 596 ~~dg~----------------------v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V 635 (723)
T 3cdi_A 596 EDDGT----------------------VKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKV 635 (723)
T ss_dssp --------------------------------------------------------------
T ss_pred cCCcc----------------------EEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEE
Confidence 98776 66999999999999999999999999999999963
No 28
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=99.13 E-value=3.1e-11 Score=102.41 Aligned_cols=49 Identities=33% Similarity=0.684 Sum_probs=40.6
Q ss_pred ccCCCCCcccCCCCCcccCCCCCCCCCcccccccccccccccccccCCCCCC
Q psy1775 37 RENEGPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKRPG 88 (304)
Q Consensus 37 r~~~~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~CG~~GH~ardC~~~~~~ 88 (304)
+......||+||+.||++++||... ....||+||+.||+++|||++..+
T Consensus 93 rp~~~~~C~~Cg~~GH~a~~C~~~~---~~~~C~~Cg~~GH~~r~Cp~~~~~ 141 (148)
T 3ts2_A 93 RPKGGDRCYNCGGLDHHAKECKLPP---QPKKCHFCQSINHMVASCPLKAQQ 141 (148)
T ss_dssp SCCCSCCCTTTCCSSCCGGGCCSCC---CCCCCTTTCCSSCCGGGCTTTTC-
T ss_pred ccCCCCcccEeCCccchhhhCCCCC---CCCcccccCCcCCEeccCcCCCCC
Confidence 3334578999999999999999854 357899999999999999987654
No 29
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.12 E-value=3.8e-11 Score=90.28 Aligned_cols=71 Identities=20% Similarity=0.352 Sum_probs=60.3
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
..+.+|.||.+ ++|.|||++|+++|+|+++|||+|.|..... ...+=.|.|+|. .++
T Consensus 4 ~~~~~i~Ip~~------~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~----------------~~~~~~v~I~G~-~~~ 60 (76)
T 2p2r_A 4 TTSHELTIPND------LIGCIIGRQGAKINEIRQMSGAQIKIANPVE----------------GSTDRQVTITGS-AAS 60 (76)
T ss_dssp CEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCCCT----------------TCSEEEEEEEEC-HHH
T ss_pred ceEEEEEEChH------HcceEECCCChHHHHHHHHHCCEEEEcCCCC----------------CCCeEEEEEEeC-HHH
Confidence 46789999998 9999999999999999999999999976211 112346899997 999
Q ss_pred HHHHHHHHHhhhcC
Q psy1775 275 VKKAVDRLVCLVSA 288 (304)
Q Consensus 275 v~~A~~~I~~ll~~ 288 (304)
+++|+++|+++|.+
T Consensus 61 v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 61 ISLAQYLINVRLSS 74 (76)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999875
No 30
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=99.12 E-value=3.7e-11 Score=92.52 Aligned_cols=47 Identities=36% Similarity=0.800 Sum_probs=36.1
Q ss_pred CCCcccCCCCCcccCCCCCCCC-C---------------cccccccccccccccccccCCCCC
Q psy1775 41 GPRCTNCGASDHKSWLCPDKPN-I---------------TNSTLCSSCGGAGHIARDCREKRP 87 (304)
Q Consensus 41 ~~~C~~Cg~~GH~~~~Cp~~~~-~---------------~~~~~C~~CG~~GH~ardC~~~~~ 87 (304)
...||+|++.||++++||+... + ...+.||+||+.||+++|||+.+.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~~rdC~~~r~ 67 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEKRS 67 (83)
T ss_dssp --CCSSSCCSSSCGGGCGGGTCCCCBC-------------CCCBCSSSSCBSSCGGGCSSCCS
T ss_pred cCCCCCCCCCCCccccCCCcccccccccCCcccccccCCCCCCeecccCCCCcCcccCCcccc
Confidence 3569999999999999986321 0 124789999999999999999874
No 31
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.11 E-value=4.3e-11 Score=93.60 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=62.2
Q ss_pred cceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCe-EEEeCC-ccccCCCCCCCCCCCCCCCCCCcEEEEEeCC
Q psy1775 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAK-IIIRGK-GSVKEGKVGRKDGQPLPGENEPLHAYVTAHN 271 (304)
Q Consensus 194 ~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~k-I~IrG~-Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~ 271 (304)
...+..+.||.+ +||.+|||+|+|+|+|+++||++ |.|... |. |.|+|.+
T Consensus 13 ~~~i~~i~I~~d------kIg~vIG~gGk~Ik~I~e~tGv~~IdI~eddG~----------------------V~I~g~~ 64 (91)
T 2cpq_A 13 AAFHEEFVVRED------LMGLAIGTHGSNIQQARKVPGVTAIELDEDTGT----------------------FRIYGES 64 (91)
T ss_dssp CSEEEEEECCHH------HHHHHHTTTTHHHHHHHTSTTEEEEEEETTTTE----------------------EEEEESS
T ss_pred CceEEEEEEChH------HhhhhcCCCcHHHHHHHHHhCCeEEEEEcCCCE----------------------EEEEECC
Confidence 457889999999 99999999999999999999998 999853 55 7799999
Q ss_pred HHHHHHHHHHHHhhhcCCCC
Q psy1775 272 PENVKKAVDRLVCLVSARPR 291 (304)
Q Consensus 272 ~~~v~~A~~~I~~ll~~~~~ 291 (304)
.+++++|+++|+.+-..-.+
T Consensus 65 ~ea~~~A~~~I~~ie~~~~v 84 (91)
T 2cpq_A 65 ADAVKKARGFLEFVEDFIQV 84 (91)
T ss_dssp HHHHHHHHHHHSCCCCCCCC
T ss_pred HHHHHHHHHHHHhhheEEec
Confidence 99999999999988766544
No 32
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=1e-10 Score=93.81 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=61.4
Q ss_pred eEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHH
Q psy1775 197 NDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVK 276 (304)
Q Consensus 197 ~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~ 276 (304)
+.+|.||.+ ++|+|||++|+|+|+|+++|||+|.|....... ....+-.|.|++ +.++|+
T Consensus 8 ~~~i~IP~~------~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~-------------~~~~~r~V~I~G-~~e~v~ 67 (107)
T 2hh2_A 8 EMTFSIPTH------KCGLVIGRGGENVKAINQQTGAFVEISRQLPPN-------------GDPNFKLFIIRG-SPQQID 67 (107)
T ss_dssp CEEEEEEGG------GTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTT-------------CCTTEEEEEEES-CHHHHH
T ss_pred eEEEEECHH------HcCccCCCCcHHHHHHHHHhCCEEEEcCccCCC-------------CCCCceEEEEEC-CHHHHH
Confidence 578999998 999999999999999999999999998753210 011234588999 899999
Q ss_pred HHHHHHHhhhcCCC
Q psy1775 277 KAVDRLVCLVSARP 290 (304)
Q Consensus 277 ~A~~~I~~ll~~~~ 290 (304)
+|+++|+++|.+..
T Consensus 68 ~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 68 HAKQLIEEKIEGPL 81 (107)
T ss_dssp HHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999998764
No 33
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.10 E-value=7.6e-11 Score=92.78 Aligned_cols=71 Identities=25% Similarity=0.412 Sum_probs=61.2
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
..+..+.||.+ ++|.||||+|+|+|+|+++|||+|.|-..|+.. +=.|.|+|. .++
T Consensus 16 ~vt~~i~Ip~~------~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~-----------------~~~V~I~G~-~e~ 71 (95)
T 2ctm_A 16 MVSEDVPLDHR------VHARIIGARGKAIRKIMDEFKVDIRFPQSGAPD-----------------PNCVTVTGL-PEN 71 (95)
T ss_dssp CCCEEEECCTT------THHHHHCSSSCHHHHHHHHHTCEEECCCTTCSC-----------------TTEEEEESC-HHH
T ss_pred cEEEEEEECHH------HccccCCCCcchHHHHHHHHCCeEEecCCCCCC-----------------CcEEEEEcC-HHH
Confidence 35689999999 999999999999999999999999998776421 123899998 699
Q ss_pred HHHHHHHHHhhhcCC
Q psy1775 275 VKKAVDRLVCLVSAR 289 (304)
Q Consensus 275 v~~A~~~I~~ll~~~ 289 (304)
+++|+++|+.|+.+.
T Consensus 72 v~~A~~~I~~i~~e~ 86 (95)
T 2ctm_A 72 VEEAIDHILNLEEEY 86 (95)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998764
No 34
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.08 E-value=1.3e-10 Score=91.79 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=61.4
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
.....|.||.+ ++|+||||+|+|+++|+++|||+|.|-..|... ...--|.|+|. .++
T Consensus 16 ~~~~~i~Ip~~------~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~---------------~~~~~V~I~G~-~e~ 73 (97)
T 2ctl_A 16 SFKLSVTVDPK------YHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGN---------------QPQDQITITGY-EKN 73 (97)
T ss_dssp TCEEEEECCTT------THHHHSCSSSCHHHHHHHHHTCEEECCCTTTCS---------------SCSSEEEEESC-HHH
T ss_pred ceeEEEEECHH------HhhhcCCCCchhHHHHHHHHCCEEEecCCCCCC---------------CCccEEEEEeC-HHH
Confidence 35789999999 999999999999999999999999998766411 01224899997 999
Q ss_pred HHHHHHHHHhhhcCC
Q psy1775 275 VKKAVDRLVCLVSAR 289 (304)
Q Consensus 275 v~~A~~~I~~ll~~~ 289 (304)
+++|+++|+.|+...
T Consensus 74 v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 74 TEAARDAILRIVGEL 88 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998754
No 35
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.08 E-value=5.8e-11 Score=91.56 Aligned_cols=75 Identities=27% Similarity=0.385 Sum_probs=61.4
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
+...+|.||.+ ++|.|||++|+|+|.|+++|||+|.|...+....+ ..+-.|.|+|. .++
T Consensus 2 k~t~~i~IP~~------~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g-------------~~~r~v~I~G~-~~~ 61 (87)
T 1ec6_A 2 KELVEIAVPEN------LVGAILGKGGKTLVEYQELTGARIQISKKGEFLPG-------------TRNRRVTITGS-PAA 61 (87)
T ss_dssp CSEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTT-------------SCEEEEEEESS-HHH
T ss_pred ceEEEEEEChH------HcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCC-------------CCceEEEEEcC-HHH
Confidence 45678999998 99999999999999999999999999875432111 12345889996 999
Q ss_pred HHHHHHHHHhhhcCC
Q psy1775 275 VKKAVDRLVCLVSAR 289 (304)
Q Consensus 275 v~~A~~~I~~ll~~~ 289 (304)
+++|..+|+.+|...
T Consensus 62 v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 62 TQAAQYLISQRVTYE 76 (87)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998754
No 36
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.03 E-value=1.6e-11 Score=127.63 Aligned_cols=113 Identities=21% Similarity=0.312 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeE
Q psy1775 156 TREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKI 235 (304)
Q Consensus 156 tr~~r~~~~Le~er~~~i~~l~~~~p~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI 235 (304)
+++ .+.++|++++.++.+++..|...+..| ...++++|++..+.||++ +||.+|||+|+++|.|+++||++|
T Consensus 560 ~~e-~l~~aL~~A~~~~~~I~~~m~~al~~~-~~~~~~ap~~~~~~I~~~------ki~~vIG~gGk~Ik~I~~~~G~~I 631 (757)
T 1e3p_A 560 PAS-VLAAALKQARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVD------KIGEVIGPKRQMINQIQEDTGAEI 631 (757)
T ss_dssp CHH-HHHHHHHHHHHHHHHHHHHHHHHCSSC-CCCCTTSCBCCCC------------------------CTTCCCCCSCC
T ss_pred CHH-HHHHHHHHHHHHHHHHHHHHHHHhccc-ccccccCceeEEEEEChH------HeehcccccceeeehhhHhhCCEE
Confidence 344 499999999999999999999999988 888899999999999999 999999999999999999999999
Q ss_pred EEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhhh--cCCCCCCCCCCc
Q psy1775 236 IIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLV--SARPRARFPPGA 298 (304)
Q Consensus 236 ~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~ll--~~~~~~~~~~g~ 298 (304)
.|.++|. |+|++.+.+++++|.+.|+.|. ....+|++|+|.
T Consensus 632 dI~~dG~----------------------v~Is~~~~~~~~~a~~~i~~i~~p~~~~vG~i~~G~ 674 (757)
T 1e3p_A 632 TIEDDGT----------------------IYIGAADGPAAEAARATINGIANPTSPEVGERILGS 674 (757)
T ss_dssp ------------------------------CCCBSSHHHHCC---------------------CB
T ss_pred EecCCce----------------------EEEecCCHHHHHHHHHHHHHhcchhhcccccEEEEE
Confidence 9988666 6699999999999999999999 888999999995
No 37
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.03 E-value=8e-11 Score=92.75 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=61.7
Q ss_pred eeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHh-CCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 196 VNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDT-GAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 196 ~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~et-g~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
....|.||.+ |++.||||+|+|+++|+++| ||+|.|-..|+.. -.|.|+|.+. .
T Consensus 17 vt~~i~Ip~~------~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~------------------~~V~I~G~~~-~ 71 (95)
T 2ctj_A 17 AEVEVSIPAK------LHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGS------------------DTVVIRGPSS-D 71 (95)
T ss_dssp CCEEEECCHH------HHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTC------------------CEEEEESCHH-H
T ss_pred EEEEEEECHH------HHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCc------------------ceEEEEcCHH-H
Confidence 3678999999 99999999999999999999 9999998777521 1399999887 9
Q ss_pred HHHHHHHHHhhhcCCCC
Q psy1775 275 VKKAVDRLVCLVSARPR 291 (304)
Q Consensus 275 v~~A~~~I~~ll~~~~~ 291 (304)
|++|+++|+.|+.+.+.
T Consensus 72 v~~A~~~I~~iv~e~e~ 88 (95)
T 2ctj_A 72 VEKAKKQLLHLAEEKQT 88 (95)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999999987643
No 38
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.02 E-value=1.1e-09 Score=93.07 Aligned_cols=100 Identities=16% Similarity=0.294 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCcc
Q psy1775 163 KKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGS 242 (304)
Q Consensus 163 ~~Le~er~~~i~~l~~~~p~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs 242 (304)
++.+.++..+.+.+... . +..|... .....++.||.+ ++|+|||++|+|+|+|+++|||+|.|...+.
T Consensus 58 e~v~~A~~~I~~~~~e~-~-~~~~~~~----~~~~~~i~vp~~------~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~ 125 (163)
T 3krm_A 58 EAQFKAQGRIYGKLKEE-N-FFGPKEE----VKLETHIRVPAS------AAGRVIGKGGKTVNELQNLTAAEVVVPRDQT 125 (163)
T ss_dssp HHHHHHHHHHHHHHHHT-T-SSCSSCC----CCEEEEEEEETT------THHHHHCGGGHHHHHHHHHHCCEEECCTTCC
T ss_pred HHHHHHHHHHHHHHhcc-c-ccccccC----CceEEEEEcChh------heeeEEcCCChHHHHHHHHhCCeEEECCCCC
Confidence 34556666666655443 1 2233322 234568999987 9999999999999999999999999977654
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhhhcCC
Q psy1775 243 VKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLVSAR 289 (304)
Q Consensus 243 ~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~ll~~~ 289 (304)
+..++.-.|.|+| +.++|++|.++|+.+|...
T Consensus 126 --------------~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 126 --------------PDENDQVIVKIIG-HFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp --------------CCTTSEEEEEEEE-CHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCCCceEEEEEe-CHHHHHHHHHHHHHHHHHH
Confidence 1223444689999 7999999999999999764
No 39
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.01 E-value=1.1e-10 Score=90.50 Aligned_cols=72 Identities=25% Similarity=0.364 Sum_probs=60.4
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
..+.+|.||.+ ++|.|||++|+|+|+|+++|||+|.|...-. ...+=.|.|+|. .++
T Consensus 13 ~~~~~i~Ip~~------~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~----------------~~~~~~v~I~G~-~e~ 69 (89)
T 1j5k_A 13 IITTQVTIPKD------LAGSIIGKGGQRIKQIRHESGASIKIDEPLE----------------GSEDRIITITGT-QDQ 69 (89)
T ss_dssp EEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHTCCEEEECSCCS----------------SSSEEEEEEEEE-HHH
T ss_pred eEEEEEEEChh------hcceeECCCCHhHHHHHHHhCCeEEecCCCC----------------CCCccEEEEEcC-HHH
Confidence 56789999998 9999999999999999999999999975311 011235889997 999
Q ss_pred HHHHHHHHHhhhcCC
Q psy1775 275 VKKAVDRLVCLVSAR 289 (304)
Q Consensus 275 v~~A~~~I~~ll~~~ 289 (304)
+++|+++|++++.+.
T Consensus 70 v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 70 IQNAQYLLQNSVKQY 84 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999764
No 40
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.96 E-value=7.5e-10 Score=93.75 Aligned_cols=105 Identities=18% Similarity=0.308 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHhCC-CCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCc
Q psy1775 163 KKLEEERHDLIQKMFKVNP-EFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKG 241 (304)
Q Consensus 163 ~~Le~er~~~i~~l~~~~p-~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~G 241 (304)
++++.++..+.+.+..... .|.+..+|.+. .....++.||.+ ++|+|||++|+|+|+|+++|||+|.|....
T Consensus 58 ~~v~~A~~~I~~ii~e~~~~~~~~~~~~~~~-~~~~~~i~vp~~------~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~ 130 (164)
T 2jvz_A 58 YKVQQACEMVMDILRERDQGGFGDRNEYGSR-IGGGIDVPVPRH------SVGVVIGRSGEMIKKIQNDAGVRIQFKQDD 130 (164)
T ss_dssp HHHHHHHHHHHHHTTCSSSCCCSSCSSCTTS-CSSSBCCEEETT------THHHHHCSSSHHHHHHHHHTCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCccccCCC-CCceEEEEEChh------hccccCCCCcHhHHHHHHHHCCeEEEeCCC
Confidence 4556666666665544332 34443445432 123468899987 999999999999999999999999997643
Q ss_pred cccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhhhcCCCC
Q psy1775 242 SVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLVSARPR 291 (304)
Q Consensus 242 s~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~ll~~~~~ 291 (304)
.. ..+=.|.|+|. .+++++|..+|+.+|...++
T Consensus 131 ~~----------------~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~~ 163 (164)
T 2jvz_A 131 GT----------------GPEKIAHIMGP-PDRCEHAARIINDLLQSLRS 163 (164)
T ss_dssp TT----------------SSEEEEEEESC-HHHHHHHHHHHHHHHHHHHC
T ss_pred CC----------------CCcEEEEEEcC-HHHHHHHHHHHHHHHhhhhC
Confidence 20 12235889996 99999999999999987543
No 41
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=3.2e-10 Score=87.12 Aligned_cols=68 Identities=29% Similarity=0.492 Sum_probs=56.4
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
.....|.||.+ ++|+|||++|+|+|+||++|||+|.|-..+. + -.|.|++.. ++
T Consensus 9 ~~~~~i~VP~~------~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~------------------~-~~v~ItG~~-e~ 62 (83)
T 2dgr_A 9 QTTIQVRVPYR------VVGLVVGPKGATIKRIQQRTHTYIVTPGRDK------------------E-PVFAVTGMP-EN 62 (83)
T ss_dssp SEEEEEECCHH------HHHHHHTTTTSSHHHHHHHTTCEEECCCSSS------------------C-CEEEEEECT-TT
T ss_pred ceEEEEEeChH------HeeeeECCCchHHHHHHHHhCCeEEecCCCC------------------C-CeEEEEcCH-HH
Confidence 45778999987 9999999999999999999999999954321 1 137777765 89
Q ss_pred HHHHHHHHHhhhcC
Q psy1775 275 VKKAVDRLVCLVSA 288 (304)
Q Consensus 275 v~~A~~~I~~ll~~ 288 (304)
+++|..+|++++..
T Consensus 63 v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 63 VDRAREEIEAHITL 76 (83)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998654
No 42
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.92 E-value=5.6e-10 Score=100.37 Aligned_cols=77 Identities=34% Similarity=0.458 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEe-CCccccCCCCCCCCCCCCCCCC
Q psy1775 182 EFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIR-GKGSVKEGKVGRKDGQPLPGEN 260 (304)
Q Consensus 182 ~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~Ir-G~Gs~~~~~~~~~~g~~~~~~~ 260 (304)
.+..|++..+++++.+.+|.||.+ .+|.||||+|+|++.|+++|||+|.|. ..|+
T Consensus 20 ~~~~pr~e~s~~aP~i~~i~IP~~------kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~------------------ 75 (219)
T 2e3u_A 20 EIVEDEDEWEEFFKQEEYVKIPKD------RIAVLIGKKGQTKKEIEKRTKTKITIDSETGE------------------ 75 (219)
T ss_dssp -------------CCEEEEECCHH------HHHHHHCGGGHHHHHHHHHHTEEEEECTTTCE------------------
T ss_pred CCCCCccccCCCCCEEEEEEeCHH------HhhhhhcccHHHHHHHHHHHCcEEEEEcCCCE------------------
Confidence 455678888899999999999998 999999999999999999999999997 5555
Q ss_pred CCcEEEEEeCC----HHHHHHHHHHHHhhh
Q psy1775 261 EPLHAYVTAHN----PENVKKAVDRLVCLV 286 (304)
Q Consensus 261 e~LHv~I~a~~----~~~v~~A~~~I~~ll 286 (304)
|.|.+.+ .+++++|.++|+.|+
T Consensus 76 ----V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 76 ----VWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp ----EEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred ----EEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 6688876 899999999999988
No 43
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.91 E-value=2.4e-09 Score=90.56 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCcc
Q psy1775 163 KKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGS 242 (304)
Q Consensus 163 ~~Le~er~~~i~~l~~~~p~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs 242 (304)
++++.++..+++.+..-.+... +..+..+..+...++.||.+ ++|.|||++|+++|+|+++|||+|.|.+...
T Consensus 57 ~~v~~A~~~I~~~i~e~~~~~~-~~~~~~~~~~~~~~i~vp~~------~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~ 129 (160)
T 2jzx_A 57 NAIFKAFAMIIDKLEEDISSSM-TNSTAASRPPVTLRLVVPAS------QCGSLIGKGGCKIKEIRESTGAQVQVAGDML 129 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCC-CSSSCCCCCSEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHSSEECCCCCCS
T ss_pred HHHHHHHHHHHHHHHhhccccC-CCCccCCCCCEEEEEEEChh------heeeEECCCCHHHHHHHHHhCCeEEECCCCC
Confidence 4556666666655544222111 11122233457889999987 9999999999999999999999999976321
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhhhcC
Q psy1775 243 VKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLVSA 288 (304)
Q Consensus 243 ~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~ll~~ 288 (304)
+ ...+=.|.|+| +.+++++|+++|.++|.+
T Consensus 130 --------------~-~~~~~~v~I~G-~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 130 --------------P-NSTERAITIAG-IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp --------------T-TCCEEEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred --------------C-CCCceEEEEEc-CHHHHHHHHHHHHHHHhc
Confidence 0 11234588999 899999999999998864
No 44
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.81 E-value=1.3e-08 Score=86.06 Aligned_cols=74 Identities=27% Similarity=0.493 Sum_probs=61.2
Q ss_pred eEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHH
Q psy1775 197 NDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVK 276 (304)
Q Consensus 197 ~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~ 276 (304)
+.++.||.+ ++|.|||++|+|+|+|+++|||+|.|-..+... ...+-.|.|+| +.++|+
T Consensus 3 ~~~~~Vp~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~--------------~~~~r~v~I~G-~~~~v~ 61 (164)
T 2jvz_A 3 VQEIMIPAG------KAGLVIGKGGETIKQLQERAGVKMILIQDGSQN--------------TNVDKPLRIIG-DPYKVQ 61 (164)
T ss_dssp EEEEEECTT------CHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSS--------------SSSCEEEEEEE-CHHHHH
T ss_pred EEEEEechh------heeEEECCChHHHHHHHHHhCCeEEEecCCCCC--------------CCCceEEEEEc-CHHHHH
Confidence 578999998 999999999999999999999999996544211 11234588999 789999
Q ss_pred HHHHHHHhhhcCCCC
Q psy1775 277 KAVDRLVCLVSARPR 291 (304)
Q Consensus 277 ~A~~~I~~ll~~~~~ 291 (304)
+|..+|..++.....
T Consensus 62 ~A~~~I~~ii~e~~~ 76 (164)
T 2jvz_A 62 QACEMVMDILRERDQ 76 (164)
T ss_dssp HHHHHHHHHTTCSSS
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999987754
No 45
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.79 E-value=1.9e-08 Score=86.37 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=57.8
Q ss_pred eeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHH
Q psy1775 196 VNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENV 275 (304)
Q Consensus 196 ~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v 275 (304)
...++.||.+ ++|.|||++|+|+|+|+++|||+|.|....... ....+=.|.|+| +.+++
T Consensus 104 ~~~~i~vp~~------~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~-------------~~~~~~~v~I~G-~~~~v 163 (174)
T 1j4w_A 104 QEFNFIVPTG------KTGLIIGKGGETIKSISQQSGARIELQRNPPPN-------------ADPNMKLFTIRG-TPQQI 163 (174)
T ss_dssp CEEEEEEETT------THHHHHCGGGHHHHHHHHHHCCEEEEECCCTTT-------------SCTTEEEEEEEC-CHHHH
T ss_pred EEEEEEEChH------HcCeeECCCchHHHHHHHHHCCEEEECCCCCCC-------------CCCCceEEEEEC-CHHHH
Confidence 4678999987 999999999999999999999999998753211 011223588999 89999
Q ss_pred HHHHHHHHhhh
Q psy1775 276 KKAVDRLVCLV 286 (304)
Q Consensus 276 ~~A~~~I~~ll 286 (304)
++|.++|+++|
T Consensus 164 ~~A~~~I~~~i 174 (174)
T 1j4w_A 164 DYARQLIEEKI 174 (174)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999875
No 46
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=98.79 E-value=3.7e-09 Score=86.57 Aligned_cols=41 Identities=24% Similarity=0.568 Sum_probs=23.0
Q ss_pred CCcccCCCCCcccCCCCCCCCCcccccccccccccccccccCCC
Q psy1775 42 PRCTNCGASDHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREK 85 (304)
Q Consensus 42 ~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~CG~~GH~ardC~~~ 85 (304)
..||+|++.||++++||..... ..||+||+.||+++|||..
T Consensus 43 ~~C~~Cg~~GH~~~~C~~~~~~---~~C~~Cg~~GH~~~~Cp~~ 83 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPHKWKK---VQCTLCKSKKHSKERCPSI 83 (124)
T ss_dssp SCSSSSSCSSSSTTTSCCCCCC---CSSSSSCSSCCCTTTCCCS
T ss_pred ccccccCCCCCccccCcCcccC---ccCCCCCcCCcchhhCCCc
Confidence 3466666666666666654211 3466666666666666654
No 47
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.76 E-value=7e-09 Score=89.28 Aligned_cols=74 Identities=23% Similarity=0.346 Sum_probs=59.7
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
....++.||.+ ++|.|||++|+|+|+|+++|||+|.|....... ...+=.|.|+|.. ++
T Consensus 103 ~~~~~i~Vp~~------~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~--------------~~~~~~v~I~G~~-~~ 161 (178)
T 2anr_A 103 ANQVKIIVPNS------TAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI--------------NLQNRVVTVSGEP-EQ 161 (178)
T ss_dssp GGEEEEEEEHH------HHHHHHCGGGHHHHHHHHHSSCEEEECCCC------------------CCEEEEEEESSH-HH
T ss_pred ceEEEEEEchh------heeeeECCCcHHHHHHHHHHCCEEEEeCCCCCC--------------CCCceEEEEEcCH-HH
Confidence 45779999997 999999999999999999999999997643210 0112348898874 89
Q ss_pred HHHHHHHHHhhhcCC
Q psy1775 275 VKKAVDRLVCLVSAR 289 (304)
Q Consensus 275 v~~A~~~I~~ll~~~ 289 (304)
+++|+.+|.++|.+.
T Consensus 162 v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 162 NRKAVELIIQKIQED 176 (178)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999875
No 48
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=98.61 E-value=2.1e-08 Score=81.99 Aligned_cols=39 Identities=41% Similarity=0.873 Sum_probs=28.9
Q ss_pred CCcccCCCC-CcccCCCCCCCCCcccccccccccccccccccCCCC
Q psy1775 42 PRCTNCGAS-DHKSWLCPDKPNITNSTLCSSCGGAGHIARDCREKR 86 (304)
Q Consensus 42 ~~C~~Cg~~-GH~~~~Cp~~~~~~~~~~C~~CG~~GH~ardC~~~~ 86 (304)
..||+||+. ||++++||.. ..||+||+.||++++||...
T Consensus 23 ~~C~~Cg~~~gH~~~~C~~~------~~C~~Cg~~GH~~~~C~~~~ 62 (124)
T 2lli_A 23 IICSYCGATDDHYSRHCPKA------IQCSKCDEVGHYRSQCPHKW 62 (124)
T ss_dssp CCCTTTCCTTTCCTTTGGGS------SCSSSSSCSSSSTTTSCCCC
T ss_pred CcCcCCCCcCCccCcccCCc------ccccccCCCCCccccCcCcc
Confidence 346666665 5666666542 68999999999999999864
No 49
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.59 E-value=3.3e-08 Score=83.53 Aligned_cols=71 Identities=18% Similarity=0.320 Sum_probs=60.5
Q ss_pred cceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHH
Q psy1775 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPE 273 (304)
Q Consensus 194 ~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~ 273 (304)
.++..++.||.+ ++|.|||++|+++|+|+++|||+|.|...|+. +-.|.|+|. .+
T Consensus 3 ~~~~~~~~vp~~------~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~------------------~r~v~I~G~-~~ 57 (160)
T 2jzx_A 3 VTLTIRLLMHGK------EVGSIIGKKGESVKKMREESGARINISEGNCP------------------ERIITLAGP-TN 57 (160)
T ss_dssp CEEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCSEEEEECCTTT------------------EEEEEEEEE-HH
T ss_pred ccEEEEEEEchh------heeeeECCCcHHHHHHHHHHCCEEEEcCCCCC------------------ceEEEEEeC-HH
Confidence 467889999998 99999999999999999999999999875431 124889986 89
Q ss_pred HHHHHHHHHHhhhcCC
Q psy1775 274 NVKKAVDRLVCLVSAR 289 (304)
Q Consensus 274 ~v~~A~~~I~~ll~~~ 289 (304)
.+.+|..+|..++...
T Consensus 58 ~v~~A~~~I~~~i~e~ 73 (160)
T 2jzx_A 58 AIFKAFAMIIDKLEED 73 (160)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998887653
No 50
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.58 E-value=2.9e-08 Score=85.15 Aligned_cols=71 Identities=24% Similarity=0.399 Sum_probs=58.7
Q ss_pred eEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHH
Q psy1775 197 NDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVK 276 (304)
Q Consensus 197 ~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~ 276 (304)
..+|.||.+ ++|+|||++|+++|+|+++|||+|.|...-. ...+-.|.|+|. .+.|+
T Consensus 4 ~~~~~vp~~------~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~----------------~~~~r~v~I~G~-~~~v~ 60 (174)
T 1j4w_A 4 MIDVPIPRF------AVGIVIGRNGEMIKKIQNDAGVRIQFKPDDG----------------TTPERIAQITGP-PDRAQ 60 (174)
T ss_dssp EEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEEECCTT----------------SCSEEEEEEEEC-HHHHH
T ss_pred EEEEEEChh------heeeeecCCchHHHHHHHHhCCEEEEecCCC----------------CCCccEEEEEeC-HHHHH
Confidence 568999998 9999999999999999999999999964210 012235789987 89999
Q ss_pred HHHHHHHhhhcCCC
Q psy1775 277 KAVDRLVCLVSARP 290 (304)
Q Consensus 277 ~A~~~I~~ll~~~~ 290 (304)
+|+++|.+++....
T Consensus 61 ~A~~~I~~~~~~~~ 74 (174)
T 1j4w_A 61 HAAEIITDLLRSVQ 74 (174)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999997654
No 51
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.55 E-value=7.4e-08 Score=81.58 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=59.6
Q ss_pred eeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHH
Q psy1775 196 VNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENV 275 (304)
Q Consensus 196 ~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v 275 (304)
.+.++.||.+ ++|.|||++|.|+|+|+++|||+|.|-..+.- ...+--|.|+| +.+.+
T Consensus 3 ~~~~~~ip~~------~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~---------------~~~~r~v~I~G-~~e~v 60 (163)
T 3krm_A 3 EMVQVFIPAQ------AVGAIIGKKGQHIKQLSRFASASIKIAPPETP---------------DSKVRMVIITG-PPEAQ 60 (163)
T ss_dssp EEEEEEEEGG------GHHHHHCGGGHHHHHHHHHHTCEEEECCCSST---------------TCSEEEEEEEE-CHHHH
T ss_pred eEEEEEechh------hcceeECCCcHHHHHHHHHHCCeEEEcCCCCC---------------CCCceEEEEEc-CHHHH
Confidence 3578999998 99999999999999999999999999775420 11223488989 79999
Q ss_pred HHHHHHHHhhhcCC
Q psy1775 276 KKAVDRLVCLVSAR 289 (304)
Q Consensus 276 ~~A~~~I~~ll~~~ 289 (304)
.+|..+|..++...
T Consensus 61 ~~A~~~I~~~~~e~ 74 (163)
T 3krm_A 61 FKAQGRIYGKLKEE 74 (163)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988765
No 52
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.55 E-value=4.8e-08 Score=84.00 Aligned_cols=76 Identities=22% Similarity=0.308 Sum_probs=60.5
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
....+|.||.+ ++|.|||++|+++|+|+++|||+|.|...+.... +.. .=.|.|+|. .++
T Consensus 5 ~~~~~i~vp~~------~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~------------~~~-er~v~I~G~-~~~ 64 (178)
T 2anr_A 5 QYFLKVLIPSY------AAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYP------------GTT-ERVCLIQGT-IEA 64 (178)
T ss_dssp CEEEEEEEEHH------HHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCT------------TSS-EEEEEEEEC-HHH
T ss_pred CEEEEEEEChh------HeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCC------------CCC-CceEEEEeC-HHH
Confidence 45789999998 9999999999999999999999999976442111 111 123778885 889
Q ss_pred HHHHHHHHHhhhcCCC
Q psy1775 275 VKKAVDRLVCLVSARP 290 (304)
Q Consensus 275 v~~A~~~I~~ll~~~~ 290 (304)
+.+|+++|.+++....
T Consensus 65 v~~A~~~I~~~~~~~~ 80 (178)
T 2anr_A 65 LNAVHGFIAEKIREMP 80 (178)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999999999997653
No 53
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=98.22 E-value=4.6e-07 Score=68.07 Aligned_cols=37 Identities=22% Similarity=0.400 Sum_probs=20.3
Q ss_pred CCCcccCCCCCCCCC------cccccccccccccccccccCCC
Q psy1775 49 ASDHKSWLCPDKPNI------TNSTLCSSCGGAGHIARDCREK 85 (304)
Q Consensus 49 ~~GH~~~~Cp~~~~~------~~~~~C~~CG~~GH~ardC~~~ 85 (304)
..||++++|+.+... .....||+||+.||++++|+..
T Consensus 1 ~~gh~~rdc~~~~~~~~~~~~~r~~~C~~Cg~~GH~a~~C~~~ 43 (74)
T 2li8_A 1 SSGLVPRGSHMPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLP 43 (74)
T ss_dssp -----------CCCCCCCSCCSTTSCCTTTCCSSSCTTTCSSC
T ss_pred CCccccCcCCCCCcCccccccCCCCcccccCCcCcCcccCCCC
Confidence 369999999976422 2347899999999999999964
No 54
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=98.13 E-value=1.5e-06 Score=57.69 Aligned_cols=28 Identities=39% Similarity=0.851 Sum_probs=21.4
Q ss_pred ccccccccccccccccccCCCCCCCCCC
Q psy1775 65 NSTLCSSCGGAGHIARDCREKRPGMGGP 92 (304)
Q Consensus 65 ~~~~C~~CG~~GH~ardC~~~~~~~~g~ 92 (304)
....||+||+.||||+|||.+.....++
T Consensus 9 ~~~~C~~Cgk~GH~ardCP~~~~~~r~~ 36 (40)
T 1a6b_B 9 DRDQCAYCKEKGHWAKDCPKKPRGPRGP 36 (40)
T ss_dssp CSSSCSSSCCTTCCTTSCSSSCCCTTCC
T ss_pred CCCeeeECCCCCcchhhCcCCcccCCCC
Confidence 3578999999999999999877654443
No 55
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=98.10 E-value=9.4e-07 Score=53.20 Aligned_cols=20 Identities=55% Similarity=1.243 Sum_probs=14.5
Q ss_pred ccccccccccccccccCCCC
Q psy1775 67 TLCSSCGGAGHIARDCREKR 86 (304)
Q Consensus 67 ~~C~~CG~~GH~ardC~~~~ 86 (304)
..||+||+.||+|+||++..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 46788888888888887654
No 56
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=98.03 E-value=4.6e-06 Score=59.28 Aligned_cols=29 Identities=38% Similarity=0.811 Sum_probs=23.3
Q ss_pred ccccccccccccccccccCCCCCCCCCCC
Q psy1775 65 NSTLCSSCGGAGHIARDCREKRPGMGGPP 93 (304)
Q Consensus 65 ~~~~C~~CG~~GH~ardC~~~~~~~~g~~ 93 (304)
....||.||+.||||+|||.+......++
T Consensus 22 ~~~~C~~Cge~GH~ardCp~~~~~~~~~~ 50 (56)
T 1u6p_A 22 DRDQCAYCKEKGHWAKDCPKKPRGPRGPR 50 (56)
T ss_dssp CTTBCSSSCCBSSCGGGCTTCCCSSCSCC
T ss_pred CCCcceeCCCCCcccccCcCCccccCCCC
Confidence 45789999999999999999876544433
No 57
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.90 E-value=1.6e-05 Score=62.93 Aligned_cols=65 Identities=18% Similarity=0.311 Sum_probs=54.9
Q ss_pred eeEEEEeCCCCCCCCcccceeecCCchhHHHHHHH-hCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 196 VNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKD-TGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 196 ~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~e-tg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
.+.+|.||.+ |-+.|||++|.|+|+|+++ +++.|.+-. ++ + -|.|.|+ .+.
T Consensus 27 ~t~~i~vp~~------~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-~~---~-----------------~ItI~G~-~~~ 78 (102)
T 2ctf_A 27 TVSSVAAPSW------LHRFIIGKKGQNLAKITQQMPKVHIEFTE-GE---D-----------------KITLEGP-TED 78 (102)
T ss_dssp EEEEEECCST------THHHHHTTTTCHHHHHHHHCSSSEEEECS-SS---C-----------------EEEEEEC-HHH
T ss_pred EEEEEEeCHH------HHhhhcCCCCccHHHHHHHcCCcEEEeCC-CC---C-----------------EEEEECC-HHH
Confidence 5678999998 8899999999999999997 589888754 11 0 3889998 889
Q ss_pred HHHHHHHHHhhhcC
Q psy1775 275 VKKAVDRLVCLVSA 288 (304)
Q Consensus 275 v~~A~~~I~~ll~~ 288 (304)
|++|..+|+.++.+
T Consensus 79 V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 79 VSVAQEQIEGMVKD 92 (102)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998864
No 58
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=97.86 E-value=1.5e-05 Score=66.73 Aligned_cols=72 Identities=17% Similarity=0.347 Sum_probs=56.5
Q ss_pred EEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCC-eEEEeCCccccCCCCCCCCCCCCCCCCCCc-EEEEEeCCHHHH
Q psy1775 198 DKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGA-KIIIRGKGSVKEGKVGRKDGQPLPGENEPL-HAYVTAHNPENV 275 (304)
Q Consensus 198 ~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~-kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~L-Hv~I~a~~~~~v 275 (304)
..|.||.+ .+|++||-+|.|+|.+++.||+ +|.|.+..... ...++.+ -|.|+| +.+++
T Consensus 69 ~~v~Vp~~------~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~------------~~~~~~~~~vtI~G-~~~~v 129 (144)
T 2qnd_A 69 DVIQVPRN------LVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN------------VPQEEGMVPFVFVG-TKDSI 129 (144)
T ss_dssp EEEEEEGG------GHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC------------CCCCTTEEEEEEEE-EHHHH
T ss_pred EEEEECHH------HcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC------------ccccCCeeEEEEEe-CHHHH
Confidence 68899988 8999999999999999999997 99998753211 0112222 366887 68899
Q ss_pred HHHHHHHHhhhcC
Q psy1775 276 KKAVDRLVCLVSA 288 (304)
Q Consensus 276 ~~A~~~I~~ll~~ 288 (304)
++|..+|+.+|..
T Consensus 130 ~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 130 ANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999864
No 59
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.84 E-value=5.4e-06 Score=74.37 Aligned_cols=55 Identities=27% Similarity=0.450 Sum_probs=48.0
Q ss_pred ccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhhhcCCC
Q psy1775 212 FVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLVSARP 290 (304)
Q Consensus 212 fiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~ll~~~~ 290 (304)
.+|+|||++|+|+|.||+.|||+|.|.|+ .|.|.| +.+.++.|...|+.+|....
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~~-----------------------~v~i~G-~~~~i~~A~~~i~~li~g~~ 193 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYGK-----------------------TVAIIG-NPIQIEIAKTAIEKLARGSP 193 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEETT-----------------------EEEEEE-CHHHHHHHHHHHHHHHTTCC
T ss_pred hhheeECCCchHHHHHHHHhCceEEECCe-----------------------EEEEEe-CHHHHHHHHHHHHHHHcCCC
Confidence 58999999999999999999999999652 167888 68899999999999996643
No 60
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=97.80 E-value=9.1e-06 Score=48.82 Aligned_cols=20 Identities=30% Similarity=0.823 Sum_probs=17.7
Q ss_pred CCcccCCCCCcccCCCCCCC
Q psy1775 42 PRCTNCGASDHKSWLCPDKP 61 (304)
Q Consensus 42 ~~C~~Cg~~GH~~~~Cp~~~ 61 (304)
..||+||+.||++++||...
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 57999999999999999864
No 61
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=97.79 E-value=7.9e-06 Score=50.30 Aligned_cols=20 Identities=50% Similarity=1.039 Sum_probs=14.3
Q ss_pred ccccccccccccccccCCCC
Q psy1775 67 TLCSSCGGAGHIARDCREKR 86 (304)
Q Consensus 67 ~~C~~CG~~GH~ardC~~~~ 86 (304)
+.||+||+.||+++||+..+
T Consensus 7 ~~C~nCgk~GH~ar~C~~pr 26 (29)
T 1nc8_A 7 IRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CBCTTTSCBSSCGGGCCSSS
T ss_pred CEEEECCccccCHhHCcccc
Confidence 56777777777777777654
No 62
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.71 E-value=2.2e-05 Score=68.94 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=47.1
Q ss_pred ccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhhhcC
Q psy1775 212 FVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLVSA 288 (304)
Q Consensus 212 fiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~ll~~ 288 (304)
.+|+|||++|.|+|.||..|||+|.|.|+ . |.|.| +++.++.|...|+.++..
T Consensus 108 ~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-~----------------------v~i~G-~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 108 IKGRIIGEGGRARRTIEEMTDTYINVGEY-E----------------------VAIIG-DYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCEEEECSS-E----------------------EEEEE-EHHHHHHHHHHHHHHHTT
T ss_pred HhhheeCCCccHHHHHHHHHCceEEEcCC-E----------------------EEEEe-ChHHHHHHHHHHHHHHcC
Confidence 58999999999999999999999999774 1 66777 689999999999999964
No 63
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=97.68 E-value=1.6e-05 Score=48.91 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=19.1
Q ss_pred CCCCcccCCCCCcccCCCCCCC
Q psy1775 40 EGPRCTNCGASDHKSWLCPDKP 61 (304)
Q Consensus 40 ~~~~C~~Cg~~GH~~~~Cp~~~ 61 (304)
.+..||+||+.||++++|+.++
T Consensus 5 ~~~~C~nCgk~GH~ar~C~~pr 26 (29)
T 1nc8_A 5 KVIRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CCCBCTTTSCBSSCGGGCCSSS
T ss_pred CCCEEEECCccccCHhHCcccc
Confidence 3467999999999999999864
No 64
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=97.56 E-value=3.9e-05 Score=50.83 Aligned_cols=22 Identities=32% Similarity=0.762 Sum_probs=19.3
Q ss_pred CCCCcccCCCCCcccCCCCCCC
Q psy1775 40 EGPRCTNCGASDHKSWLCPDKP 61 (304)
Q Consensus 40 ~~~~C~~Cg~~GH~~~~Cp~~~ 61 (304)
....||+||+.||++++||.+.
T Consensus 9 ~~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 9 DRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp CSSSCSSSCCTTCCTTSCSSSC
T ss_pred CCCeeeECCCCCcchhhCcCCc
Confidence 3468999999999999999864
No 65
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.42 E-value=5.9e-05 Score=53.36 Aligned_cols=20 Identities=30% Similarity=0.838 Sum_probs=14.4
Q ss_pred cccccccccccccccccCCC
Q psy1775 66 STLCSSCGGAGHIARDCREK 85 (304)
Q Consensus 66 ~~~C~~CG~~GH~ardC~~~ 85 (304)
...||+||+.|||++|||..
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 35688888888888888743
No 66
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=97.38 E-value=0.00012 Score=61.21 Aligned_cols=61 Identities=20% Similarity=0.389 Sum_probs=46.3
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHH
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPEN 274 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~ 274 (304)
..++++.||.+ ++|.+||++|.++++|++++| |.|-.- | ++|--+.+.+.++++
T Consensus 3 ~~~~~~~Vp~~------~vG~~IG~~G~~I~~i~~e~g--I~ii~~-~-----------------~~~~~~i~~~~~p~~ 56 (144)
T 2qnd_A 3 RFHEQFIVRED------LMGLAIGTHGANIQQARKVPG--VTAIDL-D-----------------EDTCTFHIYGEDQDA 56 (144)
T ss_dssp -CEEEEECCGG------GHHHHHCGGGHHHHHHHTSTT--EEEEEE-E-----------------TTTTEEEEEESSHHH
T ss_pred ceEEEEEECCc------ceeeEECCChhHHHHHHHHHC--CeEecc-C-----------------CCchheeeccCCHHH
Confidence 35789999999 999999999999999999999 544211 1 122336678888998
Q ss_pred HHHHHHH
Q psy1775 275 VKKAVDR 281 (304)
Q Consensus 275 v~~A~~~ 281 (304)
+.+|.++
T Consensus 57 v~~~~~~ 63 (144)
T 2qnd_A 57 VKKARSF 63 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887554
No 67
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=97.32 E-value=9.3e-05 Score=52.51 Aligned_cols=22 Identities=32% Similarity=0.762 Sum_probs=19.3
Q ss_pred CCCCcccCCCCCcccCCCCCCC
Q psy1775 40 EGPRCTNCGASDHKSWLCPDKP 61 (304)
Q Consensus 40 ~~~~C~~Cg~~GH~~~~Cp~~~ 61 (304)
....||+||+.||++++||.+.
T Consensus 22 ~~~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 22 DRDQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp CTTBCSSSCCBSSCGGGCTTCC
T ss_pred CCCcceeCCCCCcccccCcCCc
Confidence 3478999999999999999864
No 68
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.25 E-value=0.00028 Score=61.97 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=54.4
Q ss_pred ceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCC-ccccCCCCCCCCCCCCCCCCCCcEEEEE----e
Q psy1775 195 KVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGK-GSVKEGKVGRKDGQPLPGENEPLHAYVT----A 269 (304)
Q Consensus 195 ~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~-Gs~~~~~~~~~~g~~~~~~~e~LHv~I~----a 269 (304)
+.+.++.||.+ -+|.|||-.|.|++.|++++|++|.|..+ |+ |.|. .
T Consensus 3 ~~~~~i~VP~~------rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~----------------------V~i~t~~~t 54 (191)
T 1tua_A 3 KPRIYVKVKPE------RLGAVIGPRGEVKAEIMRRTGTVITVDTENSM----------------------VIVEPEAEG 54 (191)
T ss_dssp CCCEEEECCGG------GHHHHHCGGGHHHHHHHHHHTEEEEEETTTTE----------------------EEEEESSTT
T ss_pred CcceEEECCHH------HhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCe----------------------EEEEeCCCC
Confidence 34568999998 89999999999999999999999999753 33 3454 2
Q ss_pred CCHHHHHHHHHHHHhhhcC
Q psy1775 270 HNPENVKKAVDRLVCLVSA 288 (304)
Q Consensus 270 ~~~~~v~~A~~~I~~ll~~ 288 (304)
.|+..+.+|.++|+.|...
T Consensus 55 ~dp~~i~KA~dlI~ai~rg 73 (191)
T 1tua_A 55 IPPVNLMKAAEVVKAISLG 73 (191)
T ss_dssp SCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcC
Confidence 5788999999999886653
No 69
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=97.25 E-value=0.00034 Score=67.32 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=56.7
Q ss_pred cceeEEEEeCCCCCCCCcccceeecCCc--hhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCC
Q psy1775 194 IKVNDKVMIPQDEHPDINFVGLLIGPRG--NTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHN 271 (304)
Q Consensus 194 ~~~~~ki~IP~~~~P~~NfiG~iiGP~G--~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~ 271 (304)
...+.++.||.. |.+.|||.+| .++++|.+||||+|.+=..++-.... ..+. =-|.|+|.
T Consensus 28 ~~VTl~v~Ip~~------~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~-~~ks----------~~VtItG~- 89 (376)
T 3n89_A 28 TRVTLNMEFESQ------YYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTP-DPFA----------QQVTITGY- 89 (376)
T ss_dssp TEEEEEEECCGG------GHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSC-CTTT----------TEEEEEEE-
T ss_pred CEEEEEEEEchh------hhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCC-cCCC----------CeEEEEcC-
Confidence 467889999988 8999999999 99999999999999996654200000 0000 12889885
Q ss_pred HHHHHHHHHHHHhh
Q psy1775 272 PENVKKAVDRLVCL 285 (304)
Q Consensus 272 ~~~v~~A~~~I~~l 285 (304)
.++|++|.+.|..+
T Consensus 90 ~enVE~AR~~I~~l 103 (376)
T 3n89_A 90 FGDVDRARMLMRRN 103 (376)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 88999999999986
No 70
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=97.11 E-value=0.00017 Score=47.09 Aligned_cols=20 Identities=50% Similarity=1.039 Sum_probs=17.9
Q ss_pred ccccccccccccccccCCCC
Q psy1775 67 TLCSSCGGAGHIARDCREKR 86 (304)
Q Consensus 67 ~~C~~CG~~GH~ardC~~~~ 86 (304)
+.||+||+.||++++|+..+
T Consensus 1 i~C~~Cg~~GH~a~~C~~~~ 20 (39)
T 2a51_A 1 LTCFNCGKPGHTARMCRQPR 20 (39)
T ss_dssp CBCTTTCCBSSCTTTCCSCC
T ss_pred CeeeccCCCCcccccCCCCC
Confidence 47999999999999999863
No 71
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.99 E-value=0.001 Score=63.89 Aligned_cols=95 Identities=19% Similarity=0.231 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCc--hhHHHHHHHhCCeEEEeCCc
Q psy1775 164 KLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRG--NTLKSMEKDTGAKIIIRGKG 241 (304)
Q Consensus 164 ~Le~er~~~i~~l~~~~p~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G--~t~K~ie~etg~kI~IrG~G 241 (304)
++++|...|++.+... .+.+ ...+...|-|+.+ +...|||-+| .++++|.++||+.|..=..+
T Consensus 163 ~akeA~~~Ll~~l~~~--------e~~~-~~~~s~~v~V~~~------~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~ 227 (376)
T 3n89_A 163 ELIEAAKRLNEILFRE--------SPAP-ENNFTLHFTLSTY------YVDQVLGSSSTAQLMPVIERETTTIISYPCYN 227 (376)
T ss_dssp HHHHHHHHHHHHHCC----------CCC-SSCEEEEEEEEGG------GHHHHTCCTTSCCHHHHHHHHHTCEEECC---
T ss_pred HHHHHHHHHHHHHHhh--------hccc-ccceEEEEEeCHH------HHHHhhcCCCcchHHHHHHHhhCCEEECCCCC
Confidence 3556666677666332 1111 1245678888887 8899999999 56799999999999986665
Q ss_pred cccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhhh
Q psy1775 242 SVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLV 286 (304)
Q Consensus 242 s~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~ll 286 (304)
+..+.. ...-.|.|+| +.++|.+|.+.|+.||
T Consensus 228 d~~d~~------------~~~~~ItItG-s~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 228 NRNETR------------GNIYEIKVVG-NIDNVLKARRYIMDLL 259 (376)
T ss_dssp ------------------CCEEEEEEES-CHHHHHHHHHHHHHTS
T ss_pred Cccccc------------CCceEEEEEe-CHHHHHHHHHHHHhhC
Confidence 522110 1123488999 7999999999999987
No 72
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=96.86 E-value=0.00036 Score=44.98 Aligned_cols=18 Identities=39% Similarity=1.097 Sum_probs=16.8
Q ss_pred cccccccccccccccCCC
Q psy1775 68 LCSSCGGAGHIARDCREK 85 (304)
Q Consensus 68 ~C~~CG~~GH~ardC~~~ 85 (304)
.||+||+.||++++|+..
T Consensus 2 ~C~~Cg~~GH~~~~C~~~ 19 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP 19 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB
T ss_pred cccccCCCCcchhhCcCc
Confidence 699999999999999975
No 73
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=96.83 E-value=0.0004 Score=47.56 Aligned_cols=21 Identities=48% Similarity=0.974 Sum_probs=18.9
Q ss_pred cccccccccccccccccCCCC
Q psy1775 66 STLCSSCGGAGHIARDCREKR 86 (304)
Q Consensus 66 ~~~C~~CG~~GH~ardC~~~~ 86 (304)
...||+||+.||++++|+..+
T Consensus 6 ~~~C~~Cg~~GH~a~~C~~~~ 26 (49)
T 2ec7_A 6 VIRCWNCGKEGHSARQCRAPR 26 (49)
T ss_dssp CCBCTTTCCBTCCTTTCCCSS
T ss_pred cCeeeecCCCCcChhhCcCCC
Confidence 478999999999999999864
No 74
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.73 E-value=0.00057 Score=48.27 Aligned_cols=20 Identities=35% Similarity=0.777 Sum_probs=17.9
Q ss_pred CCCcccCCCCCcccCCCCCC
Q psy1775 41 GPRCTNCGASDHKSWLCPDK 60 (304)
Q Consensus 41 ~~~C~~Cg~~GH~~~~Cp~~ 60 (304)
...||+||+.||++++||..
T Consensus 7 ~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SCCCTTTCCTTSCGGGCSGG
T ss_pred CCccccCCCcCcccccCCCC
Confidence 46899999999999999953
No 75
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.65 E-value=0.0028 Score=52.63 Aligned_cols=77 Identities=13% Similarity=0.221 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCC
Q psy1775 181 PEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGEN 260 (304)
Q Consensus 181 p~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~ 260 (304)
|-+.+|.++.+| ..+||... .++.||||+|+.|+.||..|++.|.|.=-.|. +
T Consensus 46 PwW~~~e~L~dP-----lVF~vE~~------lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~--g-------------- 98 (140)
T 3v69_A 46 PKWFHVECLEDP-----KRLYVEPR------LLEIMFGKDGEHIPHLESMLHTLIHVNVWGPE--R-------------- 98 (140)
T ss_dssp CTTCCGGGGSSC-----EEEEECGG------GHHHHHCGGGTTHHHHHHHHTSEEEEECCCTT--S--------------
T ss_pred CCccCHHHCCCC-----eEEEEehh------hhhcccCCCcCccchHHhhcceeEEEeccCCC--C--------------
Confidence 556666666665 36788887 99999999999999999999999999743221 1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhhh
Q psy1775 261 EPLHAYVTAHNPENVKKAVDRLVCLV 286 (304)
Q Consensus 261 e~LHv~I~a~~~~~v~~A~~~I~~ll 286 (304)
.-=|.|.|... .=.+|+.+|..|.
T Consensus 99 -~tEVtIfG~~~-~Q~rak~MI~sLA 122 (140)
T 3v69_A 99 -RAEIWIFGPPP-FRRDVDRMLTDLA 122 (140)
T ss_dssp -CEEEEEESCHH-HHHHHHHHHHHHH
T ss_pred -cEEEEEECCHH-HHHHHHHHHHHHH
Confidence 12278888643 3345666666654
No 76
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=96.61 E-value=0.0007 Score=48.45 Aligned_cols=22 Identities=41% Similarity=0.964 Sum_probs=19.3
Q ss_pred cccccccccccccccccCCCCC
Q psy1775 66 STLCSSCGGAGHIARDCREKRP 87 (304)
Q Consensus 66 ~~~C~~CG~~GH~ardC~~~~~ 87 (304)
...||+||+.||++++|+....
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~~ 25 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKRK 25 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTTS
T ss_pred CCcccccCCCCeehhhCcCCcC
Confidence 4689999999999999998753
No 77
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.56 E-value=0.00096 Score=48.10 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=23.4
Q ss_pred CCCcccCCCCCcccCCCCCCCCCccccccccccc
Q psy1775 41 GPRCTNCGASDHKSWLCPDKPNITNSTLCSSCGG 74 (304)
Q Consensus 41 ~~~C~~Cg~~GH~~~~Cp~~~~~~~~~~C~~CG~ 74 (304)
...||+|++.||++++||... ...++.||+
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~~~----~~~~~~~g~ 58 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPLKA----QQGPSAQGS 58 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTGGG----CSCCCCSCC
T ss_pred CCccCCcCCcCCccCcCCCcc----ccCCccCCC
Confidence 468999999999999999853 235566655
No 78
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=96.52 E-value=0.00086 Score=46.81 Aligned_cols=21 Identities=48% Similarity=1.113 Sum_probs=18.7
Q ss_pred cccccccccccccccccCCCC
Q psy1775 66 STLCSSCGGAGHIARDCREKR 86 (304)
Q Consensus 66 ~~~C~~CG~~GH~ardC~~~~ 86 (304)
...||+||+.||++++|+..+
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~~~ 32 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRAPR 32 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSSCS
T ss_pred CcceeeeCCCCcChhhcCCCC
Confidence 468999999999999999864
No 79
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.00097 Score=50.88 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=19.0
Q ss_pred CCCcccCCCCCcccCCCCCCC
Q psy1775 41 GPRCTNCGASDHKSWLCPDKP 61 (304)
Q Consensus 41 ~~~C~~Cg~~GH~~~~Cp~~~ 61 (304)
...||+||+.||++++||+.+
T Consensus 46 ~~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 46 TIYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp CCBCSSSSCBSSCGGGCSSCC
T ss_pred CCeecccCCCCcCcccCCccc
Confidence 478999999999999999964
No 80
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=96.19 E-value=0.0025 Score=45.18 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=19.0
Q ss_pred CCCcccCCCCCcccCCCCCCC
Q psy1775 41 GPRCTNCGASDHKSWLCPDKP 61 (304)
Q Consensus 41 ~~~C~~Cg~~GH~~~~Cp~~~ 61 (304)
...||+||+.||++++||+..
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 30 PGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CCSCSSCSSCSSCSTTCCCTT
T ss_pred CcceeECCCCCCccCcCCCcc
Confidence 478999999999999999865
No 81
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=95.30 E-value=0.0053 Score=51.53 Aligned_cols=20 Identities=35% Similarity=0.911 Sum_probs=18.1
Q ss_pred cccccccccccccccccCCC
Q psy1775 66 STLCSSCGGAGHIARDCREK 85 (304)
Q Consensus 66 ~~~C~~CG~~GH~ardC~~~ 85 (304)
...||+||+.||+|++|+..
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~~ 116 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKLP 116 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCSC
T ss_pred CCcccEeCCccchhhhCCCC
Confidence 46899999999999999974
No 82
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=94.57 E-value=2.7e-05 Score=66.77 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=56.1
Q ss_pred HHHHhCCCCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEe--C--CccccCCCCCC
Q psy1775 175 KMFKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIR--G--KGSVKEGKVGR 250 (304)
Q Consensus 175 ~l~~~~p~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~Ir--G--~Gs~~~~~~~~ 250 (304)
+|.+|..+++.|+.+.+++++...+..|+.+ ++|.+|||.|.++ +.+.|. . .|.++
T Consensus 3 il~~m~~~i~~pp~~l~~~~p~~i~~~i~~~------~i~~vig~~G~~I--------~~~di~~~di~~g~i~------ 62 (171)
T 1y14_B 3 FIKDLSLNITLHPSFFGPRMKQYLKTKLLEE------VEGSCTGKFGYIL--------CVLDYDNIDIQRGRIL------ 62 (171)
T ss_dssp EEEEEEEECCCCTTSCSTTHHHHHHHHHHHH------HTTEEETTTEEEE--------EECCGGGCBCC-----------
T ss_pred EEEEEEEEEEECHHHhCChHHHHHHHHHHHH------HcCcCcCCceEEE--------EEEEecccccCccEEe------
Confidence 4556777788888888888888889999998 9999999999999 567776 4 34332
Q ss_pred CCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhhhcCCCCCCCCCCc
Q psy1775 251 KDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLVSARPRARFPPGA 298 (304)
Q Consensus 251 ~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~ll~~~~~~~~~~g~ 298 (304)
+.| ....+...++.++..+.+|++|+|.
T Consensus 63 ------------------~~d--~~~~~~~~~~~~~~~~~~Gev~~G~ 90 (171)
T 1y14_B 63 ------------------PTD--GSAEFNVKYRAVVFKPFKGEVVDGT 90 (171)
T ss_dssp ---------------------------CEEEEEEEEECCCTTCEEEEE
T ss_pred ------------------CCC--CCEEEEEEEEEEEccCCCCCEEEEE
Confidence 111 1222233455566777788888774
No 83
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=88.22 E-value=0.0086 Score=51.53 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=32.8
Q ss_pred cceeEEEEeCCCCCCCCcccceeecCCchhHHHH-HHHh--------CC---eEEEeCCcc
Q psy1775 194 IKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSM-EKDT--------GA---KIIIRGKGS 242 (304)
Q Consensus 194 ~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~i-e~et--------g~---kI~IrG~Gs 242 (304)
..+...|.||++ ++|.+|| .+++++ +++| |+ .|.|...|.
T Consensus 5 ~~l~~~i~I~P~------~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~~g~ 56 (187)
T 1go3_E 5 LEIADVVKVPPE------EFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGE 56 (187)
T ss_dssp EEEEEEEEECGG------GTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEEECC
T ss_pred EEEEEEEEECHH------HhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEeeccC
Confidence 356789999998 8899999 799995 9999 98 677776444
No 84
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=82.49 E-value=0.45 Score=28.17 Aligned_cols=19 Identities=32% Similarity=0.791 Sum_probs=14.4
Q ss_pred ccccccccccccccccCCC
Q psy1775 67 TLCSSCGGAGHIARDCREK 85 (304)
Q Consensus 67 ~~C~~CG~~GH~ardC~~~ 85 (304)
..|-+|...||++.+|...
T Consensus 4 pYCe~CE~FGH~t~~C~d~ 22 (26)
T 2hqh_E 4 PYCEICEMFGHWATNCNDD 22 (26)
T ss_dssp CEETTTTEESSCGGGCCTT
T ss_pred ccchHHHHhCcccccCCcc
Confidence 4678888888888888654
No 85
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=81.96 E-value=2.2 Score=37.87 Aligned_cols=53 Identities=25% Similarity=0.282 Sum_probs=42.5
Q ss_pred cccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy1775 211 NFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCL 285 (304)
Q Consensus 211 NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~l 285 (304)
+++.+++||+|..+..|.+.++++|.|=-.|- |+|.+.+......+...|+.+
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~vG~NG~----------------------IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFVARNGR----------------------IHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEEETTTE----------------------EEEECSCHHHHHHHHHHHHHH
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEEeCCCE----------------------EEEecCCHHHHHHHHHHHHHH
Confidence 38899999999999999989999999943333 899999987766666666555
No 86
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=80.92 E-value=0.72 Score=38.38 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=30.3
Q ss_pred EEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCC
Q psy1775 199 KVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGK 240 (304)
Q Consensus 199 ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~ 240 (304)
.+.++.. .+|..||++|..++.|++++|-||.|-.-
T Consensus 39 i~vVk~g------~vGa~IG~~G~ri~~i~~elgekIdIV~~ 74 (144)
T 2cxc_A 39 IFLVSEG------EAGRAIGRGGRLIKLLREALGKNIEVVEY 74 (144)
T ss_dssp EEEECTT------CHHHHHCGGGHHHHHHHHHHSSEEEEEEC
T ss_pred EEEEeCC------CccccCccCchHHHHHHHHhCCeeEEEEc
Confidence 4555543 69999999999999999999999988663
No 87
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=76.89 E-value=0.01 Score=52.77 Aligned_cols=56 Identities=16% Similarity=0.203 Sum_probs=42.5
Q ss_pred HHHHhCCCCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEe--C--Ccccc
Q psy1775 175 KMFKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIR--G--KGSVK 244 (304)
Q Consensus 175 ~l~~~~p~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~Ir--G--~Gs~~ 244 (304)
+|.+|..++..|+.+.+++++...+..|+.+ |+|.+||+.|.++ |.+.|. . .|.++
T Consensus 3 iL~~m~~~I~ipp~~~~~~~p~~i~~~I~~~------~ig~vIg~~G~vI--------~~~dI~~~di~dG~I~ 62 (215)
T 2b8k_G 3 FIKDLSLNITLHPSFFGPRMKQYLKTKLLEE------VEGSCTGKFGYIL--------CVLDYDNIDIQRGRIL 62 (215)
T ss_dssp EEECCEEEEEECGGGCSSSHHHHHHHHHHHS------STTCEETTTEEEE--------EECCSTTCBCCCEEEC
T ss_pred EeHHHHhhhhcCHHHHChhHhHHHHhcCCHH------HCCeEcCCCCEEE--------EEEEeeecccccceEe
Confidence 3445666666676677777888888899988 9999999999999 677776 3 56655
No 88
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=70.95 E-value=1.5 Score=28.75 Aligned_cols=19 Identities=32% Similarity=0.791 Sum_probs=14.3
Q ss_pred ccccccccccccccccCCC
Q psy1775 67 TLCSSCGGAGHIARDCREK 85 (304)
Q Consensus 67 ~~C~~CG~~GH~ardC~~~ 85 (304)
..|-+|.-.||++.+|+..
T Consensus 21 pYCd~CEvFGH~t~~Cndd 39 (42)
T 2pzo_E 21 PYCEICEMFGHWATNCNDD 39 (42)
T ss_dssp CEETTTTEESSCGGGCCTT
T ss_pred cccccccccCcccccCCcc
Confidence 5688888888888888654
No 89
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=61.20 E-value=2.4 Score=25.07 Aligned_cols=19 Identities=32% Similarity=0.608 Sum_probs=17.1
Q ss_pred CCcccCCCCCcccCCCCCC
Q psy1775 42 PRCTNCGASDHKSWLCPDK 60 (304)
Q Consensus 42 ~~C~~Cg~~GH~~~~Cp~~ 60 (304)
..|-+|...||...+|+..
T Consensus 4 pYCe~CE~FGH~t~~C~d~ 22 (26)
T 2hqh_E 4 PYCEICEMFGHWATNCNDD 22 (26)
T ss_dssp CEETTTTEESSCGGGCCTT
T ss_pred ccchHHHHhCcccccCCcc
Confidence 6799999999999999864
No 90
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=60.76 E-value=6.6 Score=34.68 Aligned_cols=27 Identities=22% Similarity=0.480 Sum_probs=25.2
Q ss_pred cccceeecCCchhHHHHHHHhCCeEEE
Q psy1775 211 NFVGLLIGPRGNTLKSMEKDTGAKIII 237 (304)
Q Consensus 211 NfiG~iiGP~G~t~K~ie~etg~kI~I 237 (304)
+++.+++|+++..++.|.+.+++.|.|
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~v 171 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVV 171 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEE
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEE
Confidence 388899999999999999999999999
No 91
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=57.02 E-value=3.2 Score=39.51 Aligned_cols=76 Identities=20% Similarity=0.279 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHh-CC
Q psy1775 155 NTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDT-GA 233 (304)
Q Consensus 155 ntr~~r~~~~Le~er~~~i~~l~~~~p~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~et-g~ 233 (304)
+|...-+++.|+.|=-++-+-+..+.-.-+.| .+ -.||-+-. ..|+++-+|..||++|..++.|.++. |=
T Consensus 202 RT~p~lv~~Lfe~EVPEI~dG~VeIk~iARep-G~-------RaKIAV~s-~d~~iDpvGacIG~~G~rI~~i~~eL~ge 272 (366)
T 1k0r_A 202 RTHPNLVRKLFSLEVPEIADGSVEIVAVAREA-GH-------RSKIAVRS-NVAGLNAKGACIGPMGQRVRNVMSELSGE 272 (366)
T ss_dssp SSCHHHHHHHHHHHCHHHHTTSEEEEEEEEET-TT-------EEEEEEEE-SSTTCCHHHHHHCGGGHHHHHHHHHTTTC
T ss_pred eCChHHHHHHHHhcchhhcCCeEEEEEEEecC-CC-------eEEEEEEe-CCCCCCCcccccCCcchHHHHHHHHhCCC
Confidence 45566666666666544333222222111222 11 12444433 36789999999999999999999999 99
Q ss_pred eEEEeC
Q psy1775 234 KIIIRG 239 (304)
Q Consensus 234 kI~IrG 239 (304)
+|.|-.
T Consensus 273 kIDIi~ 278 (366)
T 1k0r_A 273 KIDIID 278 (366)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 999976
No 92
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=52.60 E-value=0.078 Score=44.91 Aligned_cols=54 Identities=20% Similarity=0.253 Sum_probs=37.9
Q ss_pred HHhCCCCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeC--Ccccc
Q psy1775 177 FKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRG--KGSVK 244 (304)
Q Consensus 177 ~~~~p~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG--~Gs~~ 244 (304)
.+|..+++-|+.+.++.++...+..|+.+ ++|.+||+.|.++ +.+.|.. .|.++
T Consensus 5 ~~m~~~I~~~p~~~~~~~~~~i~~~l~~~------~~~~vi~~~G~~I--------~~~di~~i~~g~i~ 60 (172)
T 2c35_B 5 ISLEHEILLHPRYFGPNLLNTVKQKLFTE------VEGTCTGKYGFVI--------AVTTIDNIGAGVIQ 60 (172)
T ss_dssp EEEEEEEEECGGGCCSCHHHHHHHHHHHH------HTTCEETTTEEEE--------EEEEEEEECCCBCC
T ss_pred EEEeEEEEECHHHhCChHHHHHHHHHHHH------HcCcCcCCceEEE--------EEEEeeecCCeEEe
Confidence 34455555555555555666667777777 8999999999988 6777776 55554
No 93
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=52.41 E-value=4.4 Score=31.80 Aligned_cols=42 Identities=29% Similarity=0.540 Sum_probs=30.6
Q ss_pred CCCcccCCCCC--------cccCC------CCCCCCCccccccccccccc---ccccccCCCC
Q psy1775 41 GPRCTNCGASD--------HKSWL------CPDKPNITNSTLCSSCGGAG---HIARDCREKR 86 (304)
Q Consensus 41 ~~~C~~Cg~~G--------H~~~~------Cp~~~~~~~~~~C~~CG~~G---H~ardC~~~~ 86 (304)
...|..|-..| |.-++ ||--+ .-+|-.||..| |..+-||...
T Consensus 36 ~~~C~FCrnNGE~~~vy~SH~LKd~~G~V~CPvLR----~Y~CpiCGATGd~AHT~kYCP~~~ 94 (106)
T 3alr_A 36 RKFCSFCKHNGETEAVYTSHYLKNRDGDVMCPYLR----QYKCPLCGATGAKAHTKRFCPMVD 94 (106)
T ss_dssp --CCHHHHHTTCCHHHHTSBCSBCTTSCBCCTTGG----GCCCTTTCCCGGGCCCGGGCTTCG
T ss_pred CCEeECCCCCCcccCccccceeECCCCCCcCCCcc----cccCCCCCCcCCcccceecCCCCC
Confidence 46688886555 77777 77633 46799999988 8899999765
No 94
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=52.20 E-value=3.9 Score=36.96 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=51.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHH-HHHhCC
Q psy1775 155 NTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSM-EKDTGA 233 (304)
Q Consensus 155 ntr~~r~~~~Le~er~~~i~~l~~~~p~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~i-e~etg~ 233 (304)
+|...-+++.|++|=-++-+-+..+.-.-+.| .+ -.||-+-. ..|+++-+|..||++|..++.| ++-.|=
T Consensus 79 Rt~p~lvk~Lfe~EVPEI~dG~veI~~iaRe~-G~-------R~KiAV~s-~d~~iDpvGacIG~~G~rI~~i~~eL~ge 149 (251)
T 2asb_A 79 RTHPNLVRKLFSLEVPEIADGSVEIVAVAREA-GH-------RSKIAVRS-NVAGLNAKGACIGPMGQRVRNVMSELSGE 149 (251)
T ss_dssp SSCHHHHHHHHHHHCHHHHTTSEEEEEEEEET-TT-------EEEEEEEE-SSTTCCHHHHHHCGGGHHHHHHHHHTTTC
T ss_pred eccHHHHHHHHHhcchHhhcCeEEEEEEecCC-Cc-------eeEEEEEc-CCCCCCHHHHHhCCCchHHHHHHHHhCCC
Confidence 56667777778777665555443333222233 11 12454443 3488999999999999999999 666799
Q ss_pred eEEEeCC
Q psy1775 234 KIIIRGK 240 (304)
Q Consensus 234 kI~IrG~ 240 (304)
+|.|-.-
T Consensus 150 kIDIi~~ 156 (251)
T 2asb_A 150 KIDIIDY 156 (251)
T ss_dssp EEEEEEC
T ss_pred eEEEEEe
Confidence 9999763
No 95
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=46.62 E-value=4.4 Score=33.87 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=35.8
Q ss_pred ccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCH-----HHH-HHHHHHHHhh
Q psy1775 212 FVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNP-----ENV-KKAVDRLVCL 285 (304)
Q Consensus 212 fiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~-----~~v-~~A~~~I~~l 285 (304)
=.|+|||-+|.|++.||=-+.--|.=. .+ +.|.+-..++ +.| .-|..+.+++
T Consensus 43 d~glLIGK~G~TL~ALQyL~~~~vn~~---------------------~~-~~V~LDve~YRerReetL~~lA~~~A~kV 100 (152)
T 2pt7_G 43 DSALLIGEKGYRYKALSYLLFNWIHPT---------------------YG-YSIRLEISTFLQNQEKVMDTQLQSVIMTV 100 (152)
T ss_dssp GGTTTTCGGGHHHHHHHHHHHHHHHHH---------------------HS-CEEEEEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEECCCCcchHHHHHHHHHHhhhc---------------------CC-ceEEEEhHHhHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998763222110 01 5577777776 233 3466666666
Q ss_pred hcCC
Q psy1775 286 VSAR 289 (304)
Q Consensus 286 l~~~ 289 (304)
..+.
T Consensus 101 ~~tg 104 (152)
T 2pt7_G 101 HEVG 104 (152)
T ss_dssp HHTS
T ss_pred HHHC
Confidence 5554
No 96
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=46.01 E-value=7.6 Score=25.48 Aligned_cols=19 Identities=32% Similarity=0.791 Sum_probs=12.2
Q ss_pred ccccccccccccccccCCC
Q psy1775 67 TLCSSCGGAGHIARDCREK 85 (304)
Q Consensus 67 ~~C~~CG~~GH~ardC~~~ 85 (304)
..|-+|--.||++.+|...
T Consensus 21 pYCe~CEVFGH~t~eC~dd 39 (42)
T 3e2u_E 21 PYCEICEMFGHWATNCNDD 39 (42)
T ss_dssp CEETTTTEESSCGGGCCTT
T ss_pred cccccceecccccccCCcc
Confidence 4566666666776666643
No 97
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=44.74 E-value=53 Score=25.40 Aligned_cols=49 Identities=18% Similarity=0.324 Sum_probs=33.8
Q ss_pred hhHHHHHHHh-CCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhhhc
Q psy1775 222 NTLKSMEKDT-GAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLVS 287 (304)
Q Consensus 222 ~t~K~ie~et-g~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~ll~ 287 (304)
.++..|+-.. +..|.||--|+ ..-++|++.|.+.+.+++..+.+..+|.
T Consensus 45 ~~idgl~~~~~~gwvlvRpSGT-----------------EP~irvy~Ea~~~~~~~~~~~~~~~~i~ 94 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPSGT-----------------EDIVRVYAEANSQESADRLAYEVSLLVF 94 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECSSS-----------------SSSEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred hhhhcEEEEcCCcEEEEEeCCC-----------------ccEEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 4566666654 45788887766 3357899999999887766665555554
No 98
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=43.13 E-value=1.9 Score=38.83 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=23.4
Q ss_pred ccceeecCCchhHHHHHHHhCCeEEEeCCcc
Q psy1775 212 FVGLLIGPRGNTLKSMEKDTGAKIIIRGKGS 242 (304)
Q Consensus 212 fiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs 242 (304)
++.++|||++..+..|.+.++|.|.|==.|-
T Consensus 165 ~v~rl~~~~~~~l~~l~~~~~~ei~vG~NG~ 195 (251)
T 2je6_I 165 KVPRVIGKNKSMYETLTSKSGCSIFVANNGR 195 (251)
T ss_dssp GHHHHHCGGGHHHHHHHTTC---CEECTTSE
T ss_pred HhHHHhcCcchHHHHhcccCCeEEEEECCcE
Confidence 8889999999999999999999999833333
No 99
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=43.09 E-value=6.7 Score=25.71 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=17.5
Q ss_pred CCCCCcccCCCCCcccCCCCCC
Q psy1775 39 NEGPRCTNCGASDHKSWLCPDK 60 (304)
Q Consensus 39 ~~~~~C~~Cg~~GH~~~~Cp~~ 60 (304)
.+...|-+|.-.||...+|+..
T Consensus 18 ~eRpYCd~CEvFGH~t~~Cndd 39 (42)
T 2pzo_E 18 EERPYCEICEMFGHWATNCNDD 39 (42)
T ss_dssp ---CEETTTTEESSCGGGCCTT
T ss_pred cCCcccccccccCcccccCCcc
Confidence 4458899999999999999864
No 100
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=43.09 E-value=8.8 Score=36.19 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=47.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHh-CC
Q psy1775 155 NTREYRTRKKLEEERHDLIQKMFKVNPEFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDT-GA 233 (304)
Q Consensus 155 ntr~~r~~~~Le~er~~~i~~l~~~~p~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~et-g~ 233 (304)
+|....+++-++.|=-++-+-+..+--.-+.| .++ .||-+-. ..|+++-+|..||++|..++.+.+|. |=
T Consensus 198 Rt~p~~lk~LfelEVPEI~dG~VeI~~iaRep-G~R-------~KiAV~s-~d~~iDpvGacvg~~G~ri~~i~~el~ge 268 (344)
T 1hh2_P 198 RRVPEFVIGLMKLEIPEVENGIVEIKAIAREP-GVR-------TKVAVAS-NDPNVDPIGACIGEGGSRIAAILKELKGE 268 (344)
T ss_dssp SSSHHHHHHHHHHHCHHHHHSSEEEEEEEEET-TTE-------EEEEEEE-SSTTSCHHHHHHCTTSTTHHHHHHHTTTC
T ss_pred eeccHHHHHHHHhhcccceeeeEEEEEeeccc-ccc-------cceeEEc-cCCCccccceeeccCCcEeHHHHHHhCCC
Confidence 45555666666655544444332222222222 111 2444443 35789999999999999999999999 88
Q ss_pred eEEEeC
Q psy1775 234 KIIIRG 239 (304)
Q Consensus 234 kI~IrG 239 (304)
+|.|=.
T Consensus 269 ~Idii~ 274 (344)
T 1hh2_P 269 KLDVLK 274 (344)
T ss_dssp EEEEEE
T ss_pred eeeEEe
Confidence 888754
No 101
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=41.77 E-value=9.4 Score=35.08 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=40.7
Q ss_pred cccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy1775 211 NFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCL 285 (304)
Q Consensus 211 NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~l 285 (304)
+++-+++|+++..++.|.+.+++.|.|==.|- |+|.+.+....-.+...|+.+
T Consensus 219 ~lvrrl~~~~~~~l~~L~~~~~~eI~vG~NG~----------------------IWI~~~~~~~~~~i~~aI~~~ 271 (289)
T 2nn6_G 219 GLIRKLLAPDCEIIQEVGKLYPLEIVFGMNGR----------------------IWVKAKTIQQTLILANILEAC 271 (289)
T ss_dssp HHHHHHHCTTCSHHHHTTCSSSCCCEEETTTE----------------------EEECCSSHHHHHHHHHHHHHT
T ss_pred HHhhhhhcCchhHHHHhcccCCeEEEEECCcE----------------------EEEecCChhHHHHHHHHHHHh
Confidence 37778899999999999889999998844444 899999887655555555544
No 102
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=36.71 E-value=7.5 Score=32.12 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=31.8
Q ss_pred eeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEe
Q psy1775 196 VNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIR 238 (304)
Q Consensus 196 ~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~Ir 238 (304)
....+++|.+ -.++.||-+|.+++...+-||.+|.|.
T Consensus 103 ~~~~V~V~~~------q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 103 KQVVIKVSED------DKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEEEEECTT------THHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred EEEEEEEChH------HhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 3456788887 469999999999999999999998875
No 103
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=29.18 E-value=37 Score=28.63 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=37.7
Q ss_pred cccceeecCCch-hHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy1775 211 NFVGLLIGPRGN-TLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVC 284 (304)
Q Consensus 211 NfiG~iiGP~G~-t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~ 284 (304)
+++-+++|-+|. .++.|.+.+++.|.|==.|- |+|.+.+....-.+...|+.
T Consensus 100 ~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~NG~----------------------IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 100 NFARQLLFNNDFPLLKVLAAHTKFEVAIGLNGK----------------------IWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp HHHHHHHHCTTCCHHHHHHTTCCCEEEEETTTE----------------------EEEECSSHHHHHHHHHHHHH
T ss_pred HHhhHHhcCCCcchHHhhhccCCeEEEEECCcE----------------------EEEecCCHHHHHHHHHHHHH
Confidence 388899995555 99999999999999844444 89999988654443344433
No 104
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=29.15 E-value=30 Score=27.05 Aligned_cols=20 Identities=35% Similarity=0.843 Sum_probs=17.5
Q ss_pred CCcccCCCCC---cccCCCCCCC
Q psy1775 42 PRCTNCGASD---HKSWLCPDKP 61 (304)
Q Consensus 42 ~~C~~Cg~~G---H~~~~Cp~~~ 61 (304)
..|-.||..| |..+-||...
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~ 94 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVD 94 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCG
T ss_pred ccCCCCCCcCCcccceecCCCCC
Confidence 6799999999 9999999854
No 105
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=27.34 E-value=0.43 Score=40.44 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCCcceeEEEEeCCCCCCCCcccceeecCCchhHHHHHHHhCCeEEEeCCccccC
Q psy1775 182 EFKPPPDYKPPVIKVNDKVMIPQDEHPDINFVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKE 245 (304)
Q Consensus 182 ~~~~P~~~~~~~~~~~~ki~IP~~~~P~~NfiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~ 245 (304)
+++-|+.+..+.++...+..|+.+ |+|.++|+.|..+. + ||..|.--|.|.+..
T Consensus 11 ~i~ipp~~~~~~~~~~i~~~l~~~------~~g~vi~~~G~~I~-i---~~idi~~i~~G~I~~ 64 (172)
T 3h0g_G 11 TISLHPSYFGPRMQDYLKAKLLAD------VEGTCSGQYGYIIC-V---LDSNTIDIDKGRVVP 64 (172)
T ss_dssp EEECCGGGCTTTHHHHHHHHHHHH------HTTCEETTTEEEEE-E---CTTTSEEECCCEECT
T ss_pred eEEeCHHHhCccHHHHHHHHHHHH------hCCcCcCCccEEEE-E---EeeeeeEeeCCEEEC
Confidence 444444444444454445556666 89999999999998 5 432333335666653
No 106
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=26.35 E-value=52 Score=30.49 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=37.1
Q ss_pred HHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhhhcC
Q psy1775 224 LKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPENVKKAVDRLVCLVSA 288 (304)
Q Consensus 224 ~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~~v~~A~~~I~~ll~~ 288 (304)
...+-...|+++.+.|| ..+.+ |+-| ||.++++|.+.+...++.+..+|..
T Consensus 291 ~~~~~~~p~~~~~~ygk-~~r~~---rkmG----------hv~~~~~~~~~~~~~~~~~~~~~~~ 341 (355)
T 3eth_A 291 NYDWLKLPLVHLHWYDK-EVRPG---RKVG----------HLNLTDSDTSRLTATLEALIPLLPP 341 (355)
T ss_dssp CGGGGGSTTCEEEECCC-CCCTT---CEEE----------EEEEECSCHHHHHHHHHHHGGGSCG
T ss_pred HHHHHhCCCCEEEEcCC-CCCCC---CeeE----------EEEEEcCCHHHHHHHHHHHHHHhhh
Confidence 45555678999999999 65543 3444 8999999988877766666666644
No 107
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=25.78 E-value=46 Score=27.90 Aligned_cols=21 Identities=10% Similarity=0.292 Sum_probs=18.1
Q ss_pred hhHHHHHHHhCCeEEEeCCcc
Q psy1775 222 NTLKSMEKDTGAKIIIRGKGS 242 (304)
Q Consensus 222 ~t~K~ie~etg~kI~IrG~Gs 242 (304)
..||+||++.|+++.+|....
T Consensus 34 ~~i~~LE~~lg~~Lf~R~~~~ 54 (291)
T 3szp_A 34 RRIQALEDSLNLRLLNRHARK 54 (291)
T ss_dssp HHHHHHHHHHTCCCEEEETTE
T ss_pred HHHHHHHHHhCCceEeecCCC
Confidence 468999999999999997544
No 108
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=25.42 E-value=46 Score=28.52 Aligned_cols=21 Identities=10% Similarity=0.294 Sum_probs=18.0
Q ss_pred hhHHHHHHHhCCeEEEeCCcc
Q psy1775 222 NTLKSMEKDTGAKIIIRGKGS 242 (304)
Q Consensus 222 ~t~K~ie~etg~kI~IrG~Gs 242 (304)
..||+||++.|+++.+|....
T Consensus 43 ~~I~~LE~~lg~~Lf~R~~~~ 63 (310)
T 2esn_A 43 HALGRLRQGLDDELFLRQGNR 63 (310)
T ss_dssp HHHHHHHHHHTSCCEEEETTE
T ss_pred HHHHHHHHhhCCcceeecCCC
Confidence 468999999999999997544
No 109
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=22.71 E-value=15 Score=32.58 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=38.0
Q ss_pred ccceeecCCchhHHHHHHHhCCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeCCHH-----H-HHHHHHHHHhh
Q psy1775 212 FVGLLIGPRGNTLKSMEKDTGAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAHNPE-----N-VKKAVDRLVCL 285 (304)
Q Consensus 212 fiG~iiGP~G~t~K~ie~etg~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~~~~-----~-v~~A~~~I~~l 285 (304)
=.|+|||.+|.|++.||--+..-+.-.. .+.++|.|-..++- . ...|...++++
T Consensus 102 d~g~LIGk~G~tLdALQyL~~~~vn~~~--------------------~~~~rv~LDi~~YR~rR~e~L~~lA~~~A~kV 161 (225)
T 3gku_A 102 DMGILIGKRGQTLDSLQYLVSLVVNKSS--------------------SDYIRVKLDTENYRERRKETLETLAKNIAYKV 161 (225)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHHHHHHTC--------------------SSCCEEEEESTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeecCCCeEhHHHHHHHHHHHHhcC--------------------CCceEEEEecchHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999998874333211 23356778777762 2 34455566666
Q ss_pred hcCC
Q psy1775 286 VSAR 289 (304)
Q Consensus 286 l~~~ 289 (304)
..+.
T Consensus 162 ~~tg 165 (225)
T 3gku_A 162 KRTK 165 (225)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 5544
No 110
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=22.09 E-value=65 Score=27.59 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=18.3
Q ss_pred hhHHHHHHHhCCeEEEeCCcc
Q psy1775 222 NTLKSMEKDTGAKIIIRGKGS 242 (304)
Q Consensus 222 ~t~K~ie~etg~kI~IrG~Gs 242 (304)
..|++||++.|+++..|....
T Consensus 35 ~~i~~LE~~lg~~Lf~R~~r~ 55 (305)
T 3fxq_A 35 AAIQQLEDELKAPLLVRTKRG 55 (305)
T ss_dssp HHHHHHHHHHTSCSEEECSSS
T ss_pred HHHHHHHHHhCCeeEEecCCC
Confidence 468999999999999998654
No 111
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=21.61 E-value=1.2e+02 Score=25.64 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=28.3
Q ss_pred CCeEEEeCCccccCCCCCCCCCCCCCCCCCCcEEEEEeC-CHHHHHHHHHHHHhhhcC
Q psy1775 232 GAKIIIRGKGSVKEGKVGRKDGQPLPGENEPLHAYVTAH-NPENVKKAVDRLVCLVSA 288 (304)
Q Consensus 232 g~kI~IrG~Gs~~~~~~~~~~g~~~~~~~e~LHv~I~a~-~~~~v~~A~~~I~~ll~~ 288 (304)
.+.+.|-..|+ |.|+|- +++.+.+|++.|..+|.+
T Consensus 141 kv~~lIF~SGk----------------------ivitGak~~~~~~~a~~~i~p~L~~ 176 (180)
T 1ytb_A 141 KIVLLIFVSGK----------------------IVLTGAKQREEIYQAFEAIYPVLSE 176 (180)
T ss_dssp CCEEEECTTSE----------------------EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEecCCe----------------------EEEEecCCHHHHHHHHHHHHHHHHH
Confidence 47888888777 667765 789999999999998864
No 112
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=21.10 E-value=29 Score=22.74 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=18.3
Q ss_pred ccCCCCCcccCCCCCcccCCCCCC
Q psy1775 37 RENEGPRCTNCGASDHKSWLCPDK 60 (304)
Q Consensus 37 r~~~~~~C~~Cg~~GH~~~~Cp~~ 60 (304)
|..+...|-+|--.||...+|+..
T Consensus 16 ~~~eRpYCe~CEVFGH~t~eC~dd 39 (42)
T 3e2u_E 16 RGEERPYCEICEMFGHWATNCNDD 39 (42)
T ss_dssp ----CCEETTTTEESSCGGGCCTT
T ss_pred CcccCcccccceecccccccCCcc
Confidence 444568899999999999999874
No 113
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=20.81 E-value=83 Score=26.81 Aligned_cols=19 Identities=32% Similarity=0.672 Sum_probs=17.2
Q ss_pred hhHHHHHHHhCCeEEEeCC
Q psy1775 222 NTLKSMEKDTGAKIIIRGK 240 (304)
Q Consensus 222 ~t~K~ie~etg~kI~IrG~ 240 (304)
..|++||++.|+++..|++
T Consensus 39 ~~i~~LE~~lg~~Lf~R~~ 57 (303)
T 3isp_A 39 QRIKSLEQQVGQVLVVREK 57 (303)
T ss_dssp HHHHHHHHHHTSCCEECSS
T ss_pred HHHHHHHHHhCCeeEEcCC
Confidence 4689999999999999985
No 114
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.63 E-value=71 Score=24.45 Aligned_cols=35 Identities=3% Similarity=0.004 Sum_probs=23.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhhhcCCCCCCCCCCcccccCC
Q psy1775 265 AYVTAHNPENVKKAVDRLVCLVSARPRARFPPGADFILNG 304 (304)
Q Consensus 265 v~I~a~~~~~v~~A~~~I~~ll~~~~~~~~~~g~~~~~~~ 304 (304)
+.|..+..+.|..-.+.|++-..-+ ++-|-+||+|
T Consensus 32 ~~lev~~~~TV~~lK~kI~~k~gip-----~~qQrLI~~G 66 (100)
T 1wju_A 32 NLLETRLHITGRELRSKIAETFGLQ-----ENYIKIVINK 66 (100)
T ss_dssp EEEEEESSSBHHHHHHHHHHHTTCC-----STTCEEEETT
T ss_pred EEEEeCCcCHHHHHHHHHHHHHCcC-----HHHeEEEeCC
Confidence 3455555566777777777766544 6778888876
Done!